Citrus Sinensis ID: 007288
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FXA9 | 611 | Putative pentatricopeptid | yes | no | 0.967 | 0.963 | 0.602 | 0.0 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.894 | 0.641 | 0.386 | 1e-113 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.886 | 0.667 | 0.372 | 1e-112 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.899 | 0.629 | 0.364 | 1e-110 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.888 | 0.776 | 0.348 | 1e-108 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.931 | 0.717 | 0.345 | 1e-107 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.921 | 0.808 | 0.346 | 1e-107 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.926 | 0.759 | 0.343 | 1e-105 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.914 | 0.708 | 0.346 | 1e-105 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.875 | 0.639 | 0.370 | 1e-105 |
| >sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/594 (60%), Positives = 462/594 (77%), Gaps = 5/594 (0%)
Query: 18 IPPIIKQSLQSVKKSSIQSD--PPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER 75
IP ++ SL++ S Q+ PP PK ILATNLI SYF++GL+EEAR+LFDEMP+R
Sbjct: 15 IPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDR 74
Query: 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
DVV+WT MI GY S N + +AW F EMV+ +PN FTLSSVLK+C+ MK L+ ALVH
Sbjct: 75 DVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVH 134
Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
G+ +K G+EGS+YV+N++M++YATC ++M+ A L+F D+K KNDV+WTTLITG+ H G+G
Sbjct: 135 GVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDG 194
Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
GGL ++K+MLLE E+ PY +IAVRA AS V+ GK IHA+VIK GF SNLPVMNSI
Sbjct: 195 IGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSI 254
Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCF 315
LD+YCR LS+A YF EM +KDLITWNT+I+ E+S SSE L MF + +S+ F PNC+
Sbjct: 255 LDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCY 314
Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
TFTS++AACA +AAL+CGQQ+H I RRG + N+ LANALIDMYAKCGNI DSQ++F E+
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEI 374
Query: 376 SD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
D R+LV+WTSMMIGYG+HG+G EA+ELFD+MV SG+RPDRIVFMAVL+AC HAGLV++G
Sbjct: 375 VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434
Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
LKYF M ++Y +NP+++IY CVVDLLGRAG++ EAYEL++ MPFKPDES WG +LGACK
Sbjct: 435 LKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK 494
Query: 494 EHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
H+ L +LAA +V++LKP M+GTY++LS IYAAEGKW +FA+ RK+MR MG+KKE G
Sbjct: 495 AHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAG 554
Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
MSWI V ++V F +DKM + VY VL +LI E Y P++D L++D E
Sbjct: 555 MSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDSLVNDQE 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/553 (38%), Positives = 329/553 (59%), Gaps = 8/553 (1%)
Query: 59 EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
E E A +FD+M E +VV+WT+MI +A F++MV + + FTLSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275
Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
AC +++LS +H AI+ GL VE SL+D+YA C S+D+ R VF+ M+
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED 333
Query: 177 KNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGK 234
+ +SWT LITGY + N + +F EM+ +G VE N ++FS A +AC + GK
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393
Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
+ K G SN V NS++ M+ + D + DA + F+ ++EK+L+++NT + G ++
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL 453
Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353
+ E + S++ + FTF S+++ A + ++ G+Q+H+ +V+ GL N + N
Sbjct: 454 NFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513
Query: 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
ALI MY+KCG+I + ++F+ M +R++++WTSM+ G+ HG +E F++M++ GV+P
Sbjct: 514 ALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573
Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
+ + ++A+L+ACSH GLV EG ++F SM D+ + P E Y C+VDLL RAG + +A+E
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633
Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
I +MPF+ D VW LGAC+ H LGKLAA ++L+L PN YI LSNIYA GKW
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKW 693
Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
EE + R+ M+ KE G SWIEV DK+ F D + +Y L+ LI +
Sbjct: 694 EESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRC 753
Query: 593 AYEPDIDCLIHDL 605
Y PD D ++H L
Sbjct: 754 GYVPDTDLVLHKL 766
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/543 (37%), Positives = 327/543 (60%), Gaps = 3/543 (0%)
Query: 62 IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121
+ EAR +FD MPERD+VSW ++AGY+ A + M + P+ T+ SVL A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245
Query: 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
++ +S +HG A++ G + + + +L+D+YA C S++ AR +F+ M +N VS
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG-SLETARQLFDGMLERNVVS 304
Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
W ++I Y + N + +F++ML EGV+ S A+ ACA G + G+ IH +
Sbjct: 305 WNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSV 364
Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSS-ECLN 300
+ G N+ V+NS++ MYC+ + A F ++ + L++WN +I G+ ++G + LN
Sbjct: 365 ELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALN 424
Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
FS+M+S P+ FT+ S+I A A L+ + +H ++R LD N+ + AL+DMYA
Sbjct: 425 YFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYA 484
Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
KCG I ++ IF MS+R + TW +M+ GYG HG GK A+ELF+EM K ++P+ + F++
Sbjct: 485 KCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLS 544
Query: 421 VLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
V++ACSH+GLV+ GLK F M + Y++ + + YG +VDLLGRAGR+ EA++ I MP K
Sbjct: 545 VISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVK 604
Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
P +V+G +LGAC+ H+ N + AA R+ +L P+ G +++L+NIY A WE+ + R
Sbjct: 605 PAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVR 664
Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
M G +K G S +E++++V F + ++ +Y LE LI H+ E Y PD +
Sbjct: 665 VSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTN 724
Query: 600 CLI 602
++
Sbjct: 725 LVL 727
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/552 (36%), Positives = 328/552 (59%), Gaps = 4/552 (0%)
Query: 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
+ +L+ Y ++ AR +FDEM ERDV+SW +I GY S + +VFV+M+ +
Sbjct: 232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291
Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
+ + T+ SV C + +S VH + +K N+L+D+Y+ C +D+A
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCG-DLDSA 350
Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
+ VF +M ++ VS+T++I GYA G + +F+EM EG+ + Y+ + + CA
Sbjct: 351 KAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410
Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
+ GK +H + ++ G ++ V N+++DMY + + +A F EM KD+I+WNTII
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 470
Query: 288 AGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
GY K+ ++E L++F+ + E RFSP+ T ++ ACA+L+A G+++H I+R G
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
+ +AN+L+DMYAKCG + + +F +++ +DLV+WT M+ GYG HG GKEAI LF++
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQ 590
Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
M ++G+ D I F+++L ACSH+GLVDEG ++F M ++ + P E Y C+VD+L R G
Sbjct: 591 MRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 650
Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
+ +AY I++MP PD ++WG LL C+ H L + A +V +L+P G Y++++N
Sbjct: 651 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMAN 710
Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
IYA KWE+ + RK + G +K G SWIE++ +V F+A D T+ + L
Sbjct: 711 IYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRK 770
Query: 585 LIRHMNETAYEP 596
+ M E Y P
Sbjct: 771 VRARMIEEGYSP 782
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/582 (34%), Positives = 332/582 (57%), Gaps = 41/582 (7%)
Query: 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
G ++EA +LF MPERD +W M++G+ + +A F M + N ++ +SVL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
AC G+ ++ VH + K +Y+ ++L+D+Y+ C ++++A+ VF++M +N
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG-NVNDAQRVFDEMGDRNV 218
Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
VSW +LIT + +G L VF+ ML VE + + + + ACAS + G+ +H
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 240 VIKHG-FGSNLPVMNSILDMYCRFDCLSDANQYFD------------------------- 273
V+K+ +++ + N+ +DMY + + +A FD
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 274 ------EMTEKDLITWNTIIAGYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACAT 326
+M E+++++WN +IAGY ++G +E L++F +K E P ++F +I+ ACA
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 327 LAALSCGQQVHAGIVRRGL------DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL 380
LA L G Q H +++ G + ++ + N+LIDMY KCG + + +F +M +RD
Sbjct: 399 LAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDC 458
Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440
V+W +M+IG+ +G+G EA+ELF EM++SG +PD I + VL+AC HAG V+EG YF S
Sbjct: 459 VSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518
Query: 441 MN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499
M D+ V P ++ Y C+VDLLGRAG ++EA +I+ MP +PD +WG LL ACK HR
Sbjct: 519 MTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNIT 578
Query: 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVR 559
LGK A ++L+++P+ G Y++LSN+YA GKWE+ RK MR G K+ G SWI+++
Sbjct: 579 LGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638
Query: 560 DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCL 601
F+ DK + ++ +L++LI M +I L
Sbjct: 639 GHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSL 680
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/639 (34%), Positives = 339/639 (53%), Gaps = 72/639 (11%)
Query: 41 IPKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWT 98
I + I T ++ Y G I AR +F++ P RD V + MI G++ N A
Sbjct: 75 ISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAIN 134
Query: 99 VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL-VHGMAIKEGLEGSIYVENSLMDVY 157
+F +M P+ FT +SVL + + H A+K G V N+L+ VY
Sbjct: 135 LFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVY 194
Query: 158 ATCCIS---MDNARLVFNDMKWKNDVSWTTLITGYAHSG--------------------- 193
+ C S + +AR VF+++ K++ SWTT++TGY +G
Sbjct: 195 SKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAY 254
Query: 194 ----NGYGGLGVFKE-------MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242
+GY G ++E M+ G+E++ +++ +RACA+ G + GK +HA V++
Sbjct: 255 NAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314
Query: 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-------- 294
S NS++ +Y + +A F++M KDL++WN +++GY SG
Sbjct: 315 REDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373
Query: 295 ------------------------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330
E L +FS MK E F P + F+ I +CA L A
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433
Query: 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGY 390
GQQ HA +++ G D +L+ NALI MYAKCG + +++++F M D V+W +++
Sbjct: 434 CNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAAL 493
Query: 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPN 449
G HGHG EA+++++EM+K G+RPDRI + VLTACSHAGLVD+G KYF SM Y + P
Sbjct: 494 GQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPG 553
Query: 450 KEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509
+ Y ++DLL R+G+ +A +I+S+PFKP +W LL C+ H LG +AA ++
Sbjct: 554 ADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613
Query: 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIAND 569
L P GTY++LSN++AA G+WEE A+ RK+MR G KKEV SWIE+ +V F+ +D
Sbjct: 614 GLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD 673
Query: 570 KMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
+ VY L+ L + M Y PD ++HD+E +
Sbjct: 674 TSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESD 712
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/565 (34%), Positives = 321/565 (56%), Gaps = 4/565 (0%)
Query: 47 ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
L T LI + G I AR +FD++P + W +I GY+ N A ++ M
Sbjct: 54 FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLA 113
Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
V+P++FT +LKAC G+ L VH + G + ++V+N L+ +YA C + +
Sbjct: 114 RVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKC-RRLGS 172
Query: 167 ARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224
AR VF + + VSWT +++ YA +G L +F +M V+ + + + A
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAF 232
Query: 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN 284
+ G+ IHA+V+K G ++ S+ MY + ++ A FD+M +LI WN
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292
Query: 285 TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR 343
+I+GY K+G + E ++MF +M ++ P+ + TS I+ACA + +L + ++ + R
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352
Query: 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF 403
++ +++ALIDM+AKCG++ ++ +F DRD+V W++M++GYG HG +EAI L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412
Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463
M + GV P+ + F+ +L AC+H+G+V EG +F M D+ +NP ++ Y CV+DLLGRA
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRA 472
Query: 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523
G + +AYE+IK MP +P +VWG LL ACK+HR LG+ AA ++ + P+ G Y+ LS
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLS 532
Query: 524 NIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLE 583
N+YAA W+ A+ R M+ G K+VG SW+EVR ++ F DK + + +E
Sbjct: 533 NLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592
Query: 584 MLIRHMNETAYEPDIDCLIHDLEGE 608
+ + E + + D +HDL E
Sbjct: 593 WIESRLKEGGFVANKDASLHDLNDE 617
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/600 (34%), Positives = 337/600 (56%), Gaps = 36/600 (6%)
Query: 41 IPKGPSILA-TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV 99
IP+ P++ + NL+ +Y GLI E + F+++P+RD V+W V+I GY+ A
Sbjct: 67 IPQ-PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125
Query: 100 FVEMVRN-EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
+ M+R+ N TL ++LK +S +HG IK G E + V + L+ +YA
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185
Query: 159 TC-CIS-----------------------------MDNARLVFNDMKWKNDVSWTTLITG 188
CIS +++A +F M+ K+ VSW +I G
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKG 244
Query: 189 YAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN 248
A +G + F+EM ++G++M+ Y F + AC G ++ GK IHA +I+ F +
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304
Query: 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKS 307
+ V ++++DMYC+ CL A FD M +K++++W ++ GY ++G + E + +F M+
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQR 364
Query: 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367
P+ +T I+ACA +++L G Q H + GL + ++N+L+ +Y KCG+I D
Sbjct: 365 SGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDD 424
Query: 368 SQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
S ++F+EM+ RD V+WT+M+ Y G E I+LFD+MV+ G++PD + V++ACS
Sbjct: 425 STRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSR 484
Query: 428 AGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWG 486
AGLV++G +YFK M ++Y + P+ Y C++DL R+GR++EA I MPF PD W
Sbjct: 485 AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWT 544
Query: 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546
LL AC+ +GK AA +++L P+ Y +LS+IYA++GKW+ A+ R+ MR
Sbjct: 545 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604
Query: 547 SKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
KKE G SWI+ + K+ F A+D+ + +Y LE L + + Y+PD + HD+E
Sbjct: 605 VKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/626 (34%), Positives = 340/626 (54%), Gaps = 69/626 (11%)
Query: 51 NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
++ +Y G ++ FD++P+RD VSWT MI GY + +++A V +MV+ + P
Sbjct: 85 TVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEP 144
Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---------- 160
FTL++VL + + + VH +K GL G++ V NSL+++YA C
Sbjct: 145 TQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVF 204
Query: 161 --------------------CISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200
MD A F M ++ V+W ++I+G+ G L
Sbjct: 205 DRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALD 264
Query: 201 VFKEMLLEGVEMNPYSFSIA--VRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258
+F +ML + + ++P F++A + ACA+ + GK IH+ ++ GF + V+N+++ M
Sbjct: 265 IFSKMLRDSL-LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323
Query: 259 YCR------------------------------FDCLSDANQ---YFDEMTEKDLITWNT 285
Y R + L D NQ F + ++D++ W
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383
Query: 286 IIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
+I GYE+ GS E +N+F M PN +T ++++ ++LA+LS G+Q+H V+ G
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443
Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELF 403
+++++NALI MYAK GNI+ + + F + +RD V+WTSM+I HGH +EA+ELF
Sbjct: 444 EIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503
Query: 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGR 462
+ M+ G+RPD I ++ V +AC+HAGLV++G +YF M D + + P Y C+VDL GR
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGR 563
Query: 463 AGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522
AG ++EA E I+ MP +PD WG LL AC+ H+ +LGK+AA R+L L+P G Y L
Sbjct: 564 AGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSAL 623
Query: 523 SNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVL 582
+N+Y+A GKWEE AK RK M+ KKE G SWIEV+ KV F D +Y +
Sbjct: 624 ANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTM 683
Query: 583 EMLIRHMNETAYEPDIDCLIHDLEGE 608
+ + + + Y PD ++HDLE E
Sbjct: 684 KKIWDEIKKMGYVPDTASVLHDLEEE 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/540 (37%), Positives = 314/540 (58%), Gaps = 7/540 (1%)
Query: 52 LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
LI SY G + A LF+ MP ++++SWT +++GY H +A +F M + + P+
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349
Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLV 170
+ SS+L +C + +L VH IK L YV NSL+D+YA C C++ +AR V
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT--DARKV 407
Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYG---GLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
F+ + V + +I GY+ G + L +F++M + + +F +RA AS
Sbjct: 408 FDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASL 467
Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
+ K IH + K+G ++ ++++D+Y CL D+ FDEM KDL+ WN++
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527
Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
AGY ++S + E LN+F +++ R P+ FTF +++ A LA++ GQ+ H +++RGL+
Sbjct: 528 AGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587
Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
N + NAL+DMYAKCG+ D+ K F + RD+V W S++ Y HG GK+A+++ ++M
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKM 647
Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
+ G+ P+ I F+ VL+ACSHAGLV++GLK F+ M + + P E Y C+V LLGRAGR+
Sbjct: 648 MSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRL 707
Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
+A ELI+ MP KP VW LL C + L + AA + P G++ +LSNIY
Sbjct: 708 NKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIY 767
Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
A++G W E K R+ M+ G KE G SWI + +V F++ DK +Y VL+ L+
Sbjct: 768 ASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLL 827
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| 225450537 | 607 | PREDICTED: putative pentatricopeptide re | 0.995 | 0.998 | 0.685 | 0.0 | |
| 296089801 | 591 | unnamed protein product [Vitis vinifera] | 0.968 | 0.998 | 0.659 | 0.0 | |
| 449435950 | 606 | PREDICTED: putative pentatricopeptide re | 0.981 | 0.986 | 0.641 | 0.0 | |
| 449508637 | 594 | PREDICTED: putative pentatricopeptide re | 0.955 | 0.979 | 0.650 | 0.0 | |
| 224122888 | 610 | predicted protein [Populus trichocarpa] | 0.995 | 0.993 | 0.657 | 0.0 | |
| 357441891 | 606 | Pentatricopeptide repeat-containing prot | 0.983 | 0.988 | 0.633 | 0.0 | |
| 15223562 | 611 | pentatricopeptide repeat-containing prot | 0.967 | 0.963 | 0.602 | 0.0 | |
| 297848206 | 611 | pentatricopeptide repeat-containing prot | 0.967 | 0.963 | 0.601 | 0.0 | |
| 224124454 | 502 | predicted protein [Populus trichocarpa] | 0.799 | 0.970 | 0.7 | 0.0 | |
| 356574078 | 598 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.886 | 0.903 | 0.561 | 0.0 |
| >gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/610 (68%), Positives = 508/610 (83%), Gaps = 4/610 (0%)
Query: 1 MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
M T++LLS T H H IP I++ S+Q V+ + +PP IPKGPS+LAT LIKSYF +G
Sbjct: 1 MSTRKLLS---TTHFHPIPLIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKG 57
Query: 61 LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
LI EARTLFDEMPERDVV+WTVMIAGYTS N H AW VF EM+ E++PNAFT+SSVLK
Sbjct: 58 LIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLK 117
Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
ACKGMK LS LVHG+AIK GL+G IYV+N+LMD+YATCC+SMD+A +VF + KN+V
Sbjct: 118 ACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEV 177
Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
SWTTLI GY H +GYGGL VF++MLLE VE+NP+SFSIAVRAC S G +FG+ +HAAV
Sbjct: 178 SWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAV 237
Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN 300
KHGF SNLPVMNSILDMYCR C S+AN+YF EM ++DLITWNT+IAGYE+S +E L
Sbjct: 238 TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTESLY 297
Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
+FS M+SE FSPNCFTFTSI+AACATLA L+CGQQ+H I+RRGLDGNLAL+NALIDMY+
Sbjct: 298 VFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYS 357
Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
KCGNI+DS ++F MS RDLV+WT+MMIGYG HG+G+EA+ELFD+MV+SG+RPDR+VFMA
Sbjct: 358 KCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMA 417
Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
+L+ACSHAGLVDEGL+YFK M DYN++P++EIYGCVVDLLGRAG+V+EAYELI+SMPFK
Sbjct: 418 ILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 477
Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
PDE VWGP LGACK H PNLGKLAA R+LDL+P+M GTY++LSNIYAA+GKW EFA+ R
Sbjct: 478 PDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLR 537
Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
K+M+ MG+KKE G SW+EV + V F+ D++GS + +Y VLE LI HM E+ Y PD+D
Sbjct: 538 KLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESGYVPDLD 597
Query: 600 CLIHDLEGET 609
CLI+DLE T
Sbjct: 598 CLIYDLEDGT 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/610 (65%), Positives = 492/610 (80%), Gaps = 20/610 (3%)
Query: 1 MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEG 60
M T++LLS T H H IP I++ S+Q V+ + +PP IPKGPS+LAT LIKSYF +G
Sbjct: 1 MSTRKLLS---TTHFHPIPLIVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKG 57
Query: 61 LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120
LI EA +MIAGYTS N H AW VF EM+ E++PNAFT+SSVLK
Sbjct: 58 LIGEA----------------LMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLK 101
Query: 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDV 180
ACKGMK LS LVHG+AIK GL+G IYV+N+LMD+YATCC+SMD+A +VF + KN+V
Sbjct: 102 ACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEV 161
Query: 181 SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAV 240
SWTTLI GY H +GYGGL VF++MLLE VE+NP+SFSIAVRAC S G +FG+ +HAAV
Sbjct: 162 SWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAV 221
Query: 241 IKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLN 300
KHGF SNLPVMNSILDMYCR C S+AN+YF EM ++DLITWNT+IAGYE+S +E L
Sbjct: 222 TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTESLY 281
Query: 301 MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360
+FS M+SE FSPNCFTFTSI+AACATLA L+CGQQ+H I+RRGLDGNLAL+NALIDMY+
Sbjct: 282 VFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYS 341
Query: 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMA 420
KCGNI+DS ++F MS RDLV+WT+MMIGYG HG+G+EA+ELFD+MV+SG+RPDR+VFMA
Sbjct: 342 KCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMA 401
Query: 421 VLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479
+L+ACSHAGLVDEGL+YFK M DYN++P++EIYGCVVDLLGRAG+V+EAYELI+SMPFK
Sbjct: 402 ILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK 461
Query: 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539
PDE VWGP LGACK H PNLGKLAA R+LDL+P+M GTY++LSNIYAA+GKW EFA+ R
Sbjct: 462 PDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLR 521
Query: 540 KIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDID 599
K+M+ MG+KKE G SW+EV + V F+ D++GS + +Y VLE LI HM E+ Y PD+D
Sbjct: 522 KLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESGYVPDLD 581
Query: 600 CLIHDLEGET 609
CLI+DLE T
Sbjct: 582 CLIYDLEDGT 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/599 (64%), Positives = 480/599 (80%), Gaps = 1/599 (0%)
Query: 10 AATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
A++ H H IP I++ SLQ + S++QS+PP P+GPS+ ATNLIKSYFD+GL EA LF
Sbjct: 7 ASSPHFHPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLF 66
Query: 70 DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
+E+PERDVV+WT MI G+TS N ++QAWT+F EM+R+EV PNAFT+SSVLKACKGMK+LS
Sbjct: 67 NEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALS 126
Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
AL H +A K G++ S+YV+N+L+D+YA C +MD+A VFND+ K VSWTTLI G+
Sbjct: 127 CGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGF 186
Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
H G+GY GL F++MLLE V N +SFSIA RACAS S GK IHAAV K+G +
Sbjct: 187 THRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDA 246
Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSER 309
PVMNSILDMYCR + L DA + F E+TEK+LITWNT+IAGYE+S SSE L++F +M SE
Sbjct: 247 PVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSESLSLFFQMGSEG 306
Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
+ PNCFTFTSI AACA LA LSCGQQVH GIVRRG D N+AL N+LIDMYAKCG+ISDS
Sbjct: 307 YKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSH 366
Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
K+F +M RDLV+WT+MMIGYGAHG+GKEA++LFDEMV+SG++PDRIVFM VL CSHAG
Sbjct: 367 KLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAG 426
Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
LVD+GLKYF+SM DYN+NP++EIY CVVDLLGRAGRV+EA++L+++MPF+PDESVWG L
Sbjct: 427 LVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGAL 486
Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
LGACK ++L NLG LAA RVLD +PNM GTY++LS IYAAEGKW EFAK RK+M+GM K
Sbjct: 487 LGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKK 546
Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEG 607
KEVG SWIE+R++V F+ KMG H ++V+ V+++LI HM + D+D ++ LEG
Sbjct: 547 KEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDDGDVTDLDYIVDYLEG 605
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/583 (65%), Positives = 472/583 (80%), Gaps = 1/583 (0%)
Query: 10 AATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLF 69
A++ H H IP I++ SLQ + S++QS+PP P+GPS+ ATNLIKSYFD+GL EA LF
Sbjct: 7 ASSPHFHPIPLIVRNSLQWISNSTLQSNPPFTPEGPSVWATNLIKSYFDKGLTREACNLF 66
Query: 70 DEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLS 129
+E+PERDVV+WT MI G+TS N ++QAWT+F EM+R+EV PNAFT+SSVLKACKGMK+LS
Sbjct: 67 NEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALS 126
Query: 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
AL H +A K G++ S+YV+N+L+D+YA C +MD+A VFND+ K VSWTTLI G+
Sbjct: 127 CGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGF 186
Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
H G+GY GL F++MLLE V N +SFSIA RACAS S GK IHAAV K+G +
Sbjct: 187 THRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDA 246
Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSER 309
PVMNSILDMYCR + L DA + F E+TEK+LITWNT+IAGYE+S SSE L++F +M SE
Sbjct: 247 PVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSESLSLFFQMGSEG 306
Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
+ PNCFTFTSI AACA LA LSCGQQVH GIVRRG D N+AL N+LIDMYAKCG+ISDS
Sbjct: 307 YKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSH 366
Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
K+F +M RDLV+WT+MMIGYGAHG+GKEA++LFDEMV+SG++PDRIVFM VL CSHAG
Sbjct: 367 KLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAG 426
Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
LVD+GLKYF+SM DYN+NP++EIY CVVDLLGRAGRV+EA++L+++MPF+PDESVWG L
Sbjct: 427 LVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGAL 486
Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
LGACK ++L NLG LAA RVLD +PNM GTY++LS IYAAEGKW EFAK RK+M+GM K
Sbjct: 487 LGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKK 546
Query: 549 KEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
KEVG SWIE+R++V F+ KMG H ++V+ V+++LI HM +
Sbjct: 547 KEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKD 589
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa] gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/613 (65%), Positives = 487/613 (79%), Gaps = 7/613 (1%)
Query: 1 MRTKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQ-SDPPLIPKGPSILATNLIKSYFDE 59
M TKRLLS A FH PP++K LQ + + Q S P KG SILAT+L+KSYF+
Sbjct: 1 MSTKRLLS-ANNFH--PFPPMMKNYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFER 57
Query: 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP-NAFTLSSV 118
GL +AR LFDEMPERDVV+WT MI+GYT N + QAW+VFV+MV+N +P NAFT+SSV
Sbjct: 58 GLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSV 117
Query: 119 LKACKGMKSLSNAALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177
LKACKGMK + LVHG+AIK +EG IYV+N+LMD+YA+C + M +A +VF+D+K K
Sbjct: 118 LKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEK 177
Query: 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIH 237
N VSWTTLI GY H GNG L +F+EMLL+GV +NP+S SIAVRACAS G +FG+ IH
Sbjct: 178 NVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIH 237
Query: 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE 297
AVIKHGF S+LPV NSILDMYCR CLS+AN+YF++MTEKDLITWNT+IAGYE+S S E
Sbjct: 238 TAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSDSIE 297
Query: 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357
+FS+M+SE FSPNCFTFTS++AACA AAL CGQQVH GI RRGLDGNL LANALID
Sbjct: 298 PFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALID 357
Query: 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417
MYAKCGNI DSQK FSEMS +LV+WTSMMIGYG HG+GKEA+ELFDEMV+SG+RPD++V
Sbjct: 358 MYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVV 417
Query: 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
FMAVL ACSHAGLVD+GL+Y M NDY++ PN+EIYGCVVDLLGR GRV++AY+LI+SM
Sbjct: 418 FMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSM 477
Query: 477 PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536
PF DESVWG LLGACK H LGKLAA + L L+PNM+ TY++LSNIYAAEGKW E A
Sbjct: 478 PFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAA 537
Query: 537 KFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEP 596
+ RK+M+ G +K G SWIEVR++V F+ +KMGSH ++VY VLE+ ++HM E Y P
Sbjct: 538 RMRKLMKRAGCRKVAGRSWIEVRNQVYSFVVGNKMGSHKEWVYEVLELPVQHMKEAGYVP 597
Query: 597 DIDCLIHDLEGET 609
++DCLIHD E T
Sbjct: 598 EVDCLIHDQEDGT 610
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/609 (63%), Positives = 474/609 (77%), Gaps = 10/609 (1%)
Query: 3 TKRLLSYAATFHCHKIPPIIKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLI 62
+++LLS + + IP ++ SL+ IQ+D P PK + L T+LIKSYFD+G
Sbjct: 6 SRKLLS---STNFRPIPFSVQNSLRC-----IQNDTPFNPKDLTGLTTDLIKSYFDKGSF 57
Query: 63 EEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
EEA TLFDEMP RDV++WT MI GYTS N H++AW VF M+R+ V PNAFT+S+VLKAC
Sbjct: 58 EEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKAC 117
Query: 123 KGMKSLSNAALVHGMAIKEGLEGS-IYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS 181
K +K+L LVHG+AIK G +GS IYV+N+LMD+YATCC SMDNARLVF D+ KN VS
Sbjct: 118 KSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVS 177
Query: 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVI 241
WTTLITGY H + +GGL VF++M +E E++P+SFSIAV ACAS G + GK +HAAVI
Sbjct: 178 WTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVI 237
Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNM 301
HGF SNLPVMN+ILDMYCR C S+A Q F EMT+KD ITWNT+IAG+E S E L +
Sbjct: 238 NHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFETLDSYESLCI 297
Query: 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361
FS+M SE FSPNCFTFTS+IAACA LA L CGQQ+H GI+ RGLD NL L+NALIDMYAK
Sbjct: 298 FSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAK 357
Query: 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421
CGN++DS KIFS M +LV+WTSMMIGYGAHGHGKEA++LF+EMV SG++PD+IVFMAV
Sbjct: 358 CGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAV 417
Query: 422 LTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480
L+ACSHAGLVDEGL+YF+ M YNV P+++IY CVVDLL RAGRVKEAYELI++MPFKP
Sbjct: 418 LSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKP 477
Query: 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540
DES+W LLGACK+++ P++ KLAAL+VL++KPN GTY++LSN AAEG W +FA RK
Sbjct: 478 DESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAAEGNWADFASLRK 537
Query: 541 IMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDC 600
+MR SKKEVG SWIE++++VC FI D S + V VLE+LIRHM + Y D+DC
Sbjct: 538 LMRSTKSKKEVGRSWIELKNQVCSFIVGDIFDSSNKEVCEVLELLIRHMKDAGYVLDLDC 597
Query: 601 LIHDLEGET 609
HDLE ET
Sbjct: 598 SAHDLEDET 606
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g56570 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana] gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/594 (60%), Positives = 462/594 (77%), Gaps = 5/594 (0%)
Query: 18 IPPIIKQSLQSVKKSSIQSD--PPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER 75
IP ++ SL++ S Q+ PP PK ILATNLI SYF++GL+EEAR+LFDEMP+R
Sbjct: 15 IPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDR 74
Query: 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
DVV+WT MI GY S N + +AW F EMV+ +PN FTLSSVLK+C+ MK L+ ALVH
Sbjct: 75 DVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVH 134
Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
G+ +K G+EGS+YV+N++M++YATC ++M+ A L+F D+K KNDV+WTTLITG+ H G+G
Sbjct: 135 GVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDG 194
Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
GGL ++K+MLLE E+ PY +IAVRA AS V+ GK IHA+VIK GF SNLPVMNSI
Sbjct: 195 IGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSI 254
Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCF 315
LD+YCR LS+A YF EM +KDLITWNT+I+ E+S SSE L MF + +S+ F PNC+
Sbjct: 255 LDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCY 314
Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
TFTS++AACA +AAL+CGQQ+H I RRG + N+ LANALIDMYAKCGNI DSQ++F E+
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEI 374
Query: 376 SD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
D R+LV+WTSMMIGYG+HG+G EA+ELFD+MV SG+RPDRIVFMAVL+AC HAGLV++G
Sbjct: 375 VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434
Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
LKYF M ++Y +NP+++IY CVVDLLGRAG++ EAYEL++ MPFKPDES WG +LGACK
Sbjct: 435 LKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK 494
Query: 494 EHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
H+ L +LAA +V++LKP M+GTY++LS IYAAEGKW +FA+ RK+MR MG+KKE G
Sbjct: 495 AHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAG 554
Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
MSWI V ++V F +DKM + VY VL +LI E Y P++D L++D E
Sbjct: 555 MSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDSLVNDQE 608
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/594 (60%), Positives = 462/594 (77%), Gaps = 5/594 (0%)
Query: 18 IPPIIKQSLQS--VKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER 75
IP ++ SL++ V+ S PP PK ILATNLI SYF++GL+EEAR+LFDEMPER
Sbjct: 15 IPNFVRSSLRNACVESSQNTESPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPER 74
Query: 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
DVV+WT MI GY S N ++ AW F EM + +PN FTLSSVLK+C+ MK L+ ALVH
Sbjct: 75 DVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVH 134
Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
G+ +K G+EGS+YV+N+LM++YATC ++M+ A L+F D+K KNDV+WTTLITG+ H G+G
Sbjct: 135 GVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDG 194
Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
GGL ++K+MLLE ++ PY +IAVRA AS V+ GK IHA+V+K GF SNLPVMNSI
Sbjct: 195 IGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSI 254
Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCF 315
LD YCR LS+A +YF EM +KDLITWNT+I+ E+S SSE L MF + +S+ F PNC+
Sbjct: 255 LDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCY 314
Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEM 375
TFTS++AACA +AAL+CGQQ+H I RRG + N+ LANALIDMYAKCG+I DS+++F E+
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEI 374
Query: 376 SD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
+ R+LV+WTSMMIGYG+HG+G EA+ELFD+MV SG+RPDRIVFMAVL+AC HAGLV++G
Sbjct: 375 EERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434
Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
LKYF M ++Y +NP+++IY CVVDLLGRAG++ EAYEL++ MPFKPDES WG +LGACK
Sbjct: 435 LKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK 494
Query: 494 EHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
H+ L +LAA +V++LKP M+GTY++LS IYAAEGKW EFA+ RK+MR MG+KKE G
Sbjct: 495 AHKHTGLISRLAAKKVMELKPRMVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAG 554
Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
MSWIEV ++V F +DKM + VY VL +LI E Y PD+D L++D E
Sbjct: 555 MSWIEVENQVFSFAVSDKMCPNASSVYSVLGLLIEETKEAGYVPDLDSLVYDQE 608
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124454|ref|XP_002330027.1| predicted protein [Populus trichocarpa] gi|222871452|gb|EEF08583.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/490 (70%), Positives = 405/490 (82%), Gaps = 3/490 (0%)
Query: 72 MPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSN 130
MPERDVV+ T MI+GYT N + QAW+VFV+MV+N+ V PNAFT+SSVLKACKGM S+
Sbjct: 1 MPERDVVALTAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLKACKGMNSVFC 60
Query: 131 AALVHGMAIKEG-LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGY 189
LVHG+AIK +EG IYV+N+LMD+YATC ++M +A +VF+D+K KN VSWTTLI GY
Sbjct: 61 GGLVHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGY 120
Query: 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL 249
H GNG + VF+E+ LEG E+NP+S SIAVRACAS G G+ IH AVIKHGF S+L
Sbjct: 121 THRGNGSRAVQVFREISLEGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHGFESDL 180
Query: 250 PVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSER 309
PVMNSILDMYCR CLS+A +YF+EM+EKDLITWNT+IAGYE+S S E L +FS+M+SE
Sbjct: 181 PVMNSILDMYCRCGCLSEAKEYFNEMSEKDLITWNTLIAGYERSDSIEPLFIFSQMESEG 240
Query: 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369
FSPNCFTFTS++AACA AAL CGQQVH GI RRGLDGNL LANALIDMYAKCGNI DSQ
Sbjct: 241 FSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQ 300
Query: 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429
K FSEMS +LV+WTSMMIGYG HG+GKEA+ELFDEMV+SG+RPD++VFMAVL ACSHAG
Sbjct: 301 KNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAG 360
Query: 430 LVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPL 488
LVD+GL+YF M +DY++ PN+EIYGCVV LLGRAGRV+EAY LI+SMPF DESVWG L
Sbjct: 361 LVDQGLRYFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESVWGAL 420
Query: 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548
LGACK H L LGKLAA + L LKPNM+ TY++LSNIYAAEGKW E + RK+M+ GSK
Sbjct: 421 LGACKAHNLSKLGKLAAKKALALKPNMVETYVMLSNIYAAEGKWGEAERMRKLMKRAGSK 480
Query: 549 KEVGMSWIEV 558
KE G SWIE+
Sbjct: 481 KEAGRSWIEM 490
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/559 (56%), Positives = 408/559 (72%), Gaps = 19/559 (3%)
Query: 35 QSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHN 94
Q L P S ++ +KS F++ I+E LFD+MP+R+VV+WT MI S N H
Sbjct: 51 QKLSSLHPIEESFCPSHFLKSSFNKVSIKEPHALFDKMPQRNVVTWTAMITSNNSRNNHM 110
Query: 95 QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGS-IYVENSL 153
+AW+VF +M+R+ G+K+LS LVH +AIK G++GS +YV+NSL
Sbjct: 111 RAWSVFPQMLRD-----------------GVKALSCGQLVHSLAIKIGVQGSSVYVDNSL 153
Query: 154 MDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213
MD+YATCC SMD AR+VF+D+ K DV WTTLITGY H G+ YGGL VF++M LE ++
Sbjct: 154 MDMYATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALS 213
Query: 214 PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD 273
+SFSIA RACAS G GK +HA V+KHGF SNLPVMNSILDMYC+ C S+A + F
Sbjct: 214 LFSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFS 273
Query: 274 EMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
MT KD ITWNT+IAG+E S E L +FS+M SE P+CF+FTS + ACA LA L CG
Sbjct: 274 VMTHKDTITWNTLIAGFEALDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLYCG 333
Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
QQ+H IVR GLD L ++NALI MYAKCGNI+DS+KIFS+M +LV+WTSM+ GYG H
Sbjct: 334 QQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDH 393
Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEI 452
G+GK+A+ELF+EM++SG++PD++VFMAVL+ACSHAGLVDEGL+YF+ M YN+ P+ EI
Sbjct: 394 GYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEI 453
Query: 453 YGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512
YGCVVDL GRAGRVKEAY+LI++MPF PDES+W LLGACK H P++ K AALR LD+K
Sbjct: 454 YGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVHNQPSVAKFAALRALDMK 513
Query: 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMG 572
P GTY ++SNIYAAEG W++FA K+ RG+ +K + G SWIE++D++C F+ D+
Sbjct: 514 PISAGTYALISNIYAAEGNWDDFASSTKLRRGIKNKSDSGRSWIELKDQICSFVVGDRFV 573
Query: 573 SHTQYVYGVLEMLIRHMNE 591
S + V VL++L+ HM +
Sbjct: 574 SSNEQVCEVLKLLMVHMKD 592
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| TAIR|locus:2027589 | 611 | PGN "AT1G56570" [Arabidopsis t | 0.967 | 0.963 | 0.592 | 5.1e-193 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.899 | 0.644 | 0.381 | 4.6e-105 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.906 | 0.682 | 0.363 | 3.7e-103 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.582 | 0.481 | 0.365 | 4.1e-102 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.899 | 0.629 | 0.358 | 3.8e-101 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.880 | 0.618 | 0.370 | 3.7e-99 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.921 | 0.636 | 0.356 | 2.9e-97 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.875 | 0.639 | 0.362 | 3.7e-96 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.617 | 0.475 | 0.401 | 4.2e-96 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.712 | 0.510 | 0.387 | 8.8e-96 |
| TAIR|locus:2027589 PGN "AT1G56570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
Identities = 352/594 (59%), Positives = 455/594 (76%)
Query: 18 IPPIIKQSLQSVKKSSIQSD--PPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPER 75
IP ++ SL++ S Q+ PP PK ILATNLI SYF++GL+EEAR+LFDEMP+R
Sbjct: 15 IPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDR 74
Query: 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135
DVV+WT MI GY S N + +AW F EMV+ +PN FTLSSVLK+C+ MK L+ ALVH
Sbjct: 75 DVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVH 134
Query: 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNG 195
G+ +K G+EGS+YV+N++M++YATC ++M+ A L+F D+K KNDV+WTTLITG+ H G+G
Sbjct: 135 GVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDG 194
Query: 196 YGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255
GGL ++K+MLLE E+ PY +IAVRA AS V+ GK IHA+VIK GF SNLPVMNSI
Sbjct: 195 IGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSI 254
Query: 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCF 315
LD+YCR LS+A YF EM +KDLITWNT+I+ E+S SSE L MF + +S+ F PNC+
Sbjct: 255 LDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSSEALLMFQRFESQGFVPNCY 314
Query: 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGXXXXXXXXIDMYAKCGNISDSQKIFSEM 375
TFTS++AACA +AAL+CGQQ+H I RRG + IDMYAKCGNI DSQ++F E+
Sbjct: 315 TFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEI 374
Query: 376 SDR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434
DR +LV+WTSMMIGYG+HG+G EA+ELFD+MV SG+RPDRIVFMAVL+AC HAGLV++G
Sbjct: 375 VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434
Query: 435 LKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493
LKYF M ++Y +NP+++IY CVVDLLGRAG++ EAYEL++ MPFKPDES WG +LGACK
Sbjct: 435 LKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACK 494
Query: 494 EHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVG 552
H+ L +LAA +V++LKP M+GTY++LS IYAAEGKW +FA+ RK+MR MG+KKE G
Sbjct: 495 AHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAG 554
Query: 553 MSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606
MSWI V ++V F +DKM + VY VL +LI E Y P++D L++D E
Sbjct: 555 MSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDSLVNDQE 608
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
Identities = 212/556 (38%), Positives = 326/556 (58%)
Query: 59 EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV 118
E E A +FD+M E +VV+WT+MI +A F++MV + + FTLSSV
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275
Query: 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI--SMDNARLVFNDMKW 176
AC +++LS +H AI+ GL VE SL+D+YA C S+D+ R VF+ M+
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMED 333
Query: 177 KNDVSWTTLITGYAHSGN-GYGGLGVFKEMLLEG-VEMNPYSFSIAVRACASTGWVSFGK 234
+ +SWT LITGY + N + +F EM+ +G VE N ++FS A +AC + GK
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393
Query: 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG 294
+ K G SN V NS++ M+ + D + DA + F+ ++EK+L+++NT + G ++
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL 453
Query: 295 SSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGXXXXXX 353
+ E + S++ + FTF S+++ A + ++ G+Q+H+ +V+ GL
Sbjct: 454 NFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513
Query: 354 XXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413
I MY+KCG+I + ++F+ M +R++++WTSM+ G+ HG +E F++M++ GV+P
Sbjct: 514 ALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573
Query: 414 DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472
+ + ++A+L+ACSH GLV EG ++F SM D+ + P E Y C+VDLL RAG + +A+E
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633
Query: 473 IKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532
I +MPF+ D VW LGAC+ H LGKLAA ++L+L PN YI LSNIYA GKW
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKW 693
Query: 533 EEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNET 592
EE + R+ M+ KE G SWIEV DK+ F D + +Y L+ LI +
Sbjct: 694 EESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRC 753
Query: 593 AYEPDIDCLIHDLEGE 608
Y PD D ++H LE E
Sbjct: 754 GYVPDTDLVLHKLEEE 769
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 202/555 (36%), Positives = 325/555 (58%)
Query: 50 TNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN 109
T L Y + EAR +FD MPERD+VSW ++AGY+ A + M +
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
Query: 110 PNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARL 169
P+ T+ SVL A ++ +S +HG A++ G + + + +L+D+YA C S++ AR
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG-SLETARQ 292
Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
+F+ M +N VSW ++I Y + N + +F++ML EGV+ S A+ ACA G
Sbjct: 293 LFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD 352
Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAG 289
+ G+ IH ++ G N+ V+NS++ MYC+ + A F ++ + L++WN +I G
Sbjct: 353 LERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILG 412
Query: 290 YEKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGX 348
+ ++G + LN FS+M+S P+ FT+ S+I A A L+ + +H ++R LD
Sbjct: 413 FAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKN 472
Query: 349 XXXXXXXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408
+DMYAKCG I ++ IF MS+R + TW +M+ GYG HG GK A+ELF+EM K
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK 532
Query: 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVK 467
++P+ + F++V++ACSH+GLV+ GLK F M + Y++ + + YG +VDLLGRAGR+
Sbjct: 533 GTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLN 592
Query: 468 EAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
EA++ I MP KP +V+G +LGAC+ H+ N + AA R+ +L P+ G +++L+NIY
Sbjct: 593 EAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYR 652
Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIR 587
A WE+ + R M G +K G S +E++++V F + ++ +Y LE LI
Sbjct: 653 AASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLIC 712
Query: 588 HMNETAYEPDIDCLI 602
H+ E Y PD + ++
Sbjct: 713 HIKEAGYVPDTNLVL 727
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 131/358 (36%), Positives = 216/358 (60%)
Query: 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGS-SECLNMFSKMKSER-FS 311
++LD Y + A + + M +KD++ WN +I+ YE++G +E L +F +++ ++
Sbjct: 303 TMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMK 362
Query: 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGXXXXXXXXIDMYAKCGNISDSQKI 371
N T S ++ACA + AL G+ +H+ I + G+ I MY+KCG++ S+++
Sbjct: 363 LNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREV 422
Query: 372 FSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431
F+ + RD+ W++M+ G HG G EA+++F +M ++ V+P+ + F V ACSH GLV
Sbjct: 423 FNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 482
Query: 432 DEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490
DE F M ++Y + P ++ Y C+VD+LGR+G +++A + I++MP P SVWG LLG
Sbjct: 483 DEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLG 542
Query: 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550
ACK H NL ++A R+L+L+P G +++LSNIYA GKWE ++ RK MR G KKE
Sbjct: 543 ACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE 602
Query: 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
G S IE+ + F++ D ++ VYG L ++ + YEP+I ++ +E E
Sbjct: 603 PGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEE 660
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
Identities = 198/552 (35%), Positives = 322/552 (58%)
Query: 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE 107
+ +L+ Y ++ AR +FDEM ERDV+SW +I GY S + +VFV+M+ +
Sbjct: 232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291
Query: 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167
+ + T+ SV C + +S VH + +K N+L+D+Y+ C +D+A
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCG-DLDSA 350
Query: 168 RLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
+ VF +M ++ VS+T++I GYA G + +F+EM EG+ + Y+ + + CA
Sbjct: 351 KAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410
Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
+ GK +H + ++ G ++ V N+++DMY + + +A F EM KD+I+WNTII
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 470
Query: 288 AGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345
GY K+ ++E L++F+ + E RFSP+ T ++ ACA+L+A G+++H I+R G
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 346 DGXXXXXXXXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDE 405
+DMYAKCG + + +F +++ +DLV+WT M+ GYG HG GKEAI LF++
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQ 590
Query: 406 MVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAG 464
M ++G+ D I F+++L ACSH+GLVDEG ++F M ++ + P E Y C+VD+L R G
Sbjct: 591 MRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTG 650
Query: 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524
+ +AY I++MP PD ++WG LL C+ H L + A +V +L+P G Y++++N
Sbjct: 651 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMAN 710
Query: 525 IYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEM 584
IYA KWE+ + RK + G +K G SWIE++ +V F+A D T+ + L
Sbjct: 711 IYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRK 770
Query: 585 LIRHMNETAYEP 596
+ M E Y P
Sbjct: 771 VRARMIEEGYSP 782
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 201/542 (37%), Positives = 305/542 (56%)
Query: 52 LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFN-CHNQAWTVFVEMVRNEVNP 110
LI Y G ++ AR LFD MP RD++SW MI+GY CH + +F M V+P
Sbjct: 237 LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCH-EGLELFFAMRGLSVDP 295
Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLV 170
+ TL+SV+ AC+ + +H I G I V NSL +Y S A +
Sbjct: 296 DLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAG-SWREAEKL 354
Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230
F+ M+ K+ VSWTT+I+GY ++ + ++ M + V+ + + + + ACA+ G +
Sbjct: 355 FSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDL 414
Query: 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGY 290
G +H IK S + V N++++MY + C+ A F + K++I+W +IIAG
Sbjct: 415 DTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGL 474
Query: 291 EKSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGXX 349
+ E L +MK PN T T+ +AACA + AL CG+++HA ++R G+
Sbjct: 475 RLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDD 533
Query: 350 XXXXXXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
+DMY +CG ++ + F+ +D+ +W ++ GY G G +ELFD MVKS
Sbjct: 534 FLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKS 592
Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
VRPD I F+++L CS + +V +GL YF M DY V PN + Y CVVDLLGRAG ++EA
Sbjct: 593 RVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEA 652
Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
++ I+ MP PD +VWG LL AC+ H +LG+L+A + +L +G YI+L N+YA
Sbjct: 653 HKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADC 712
Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
GKW E AK R++M+ G + G SW+EV+ KV F+++DK T+ + VLE M
Sbjct: 713 GKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKM 772
Query: 590 NE 591
+E
Sbjct: 773 SE 774
|
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| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
Identities = 202/567 (35%), Positives = 320/567 (56%)
Query: 46 SILATN--LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
S++ N L+ Y +AR +FDEM RD VS+ MI GY ++ +F+E
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN 299
Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
+ ++ P+ T+SSVL+AC ++ LS A ++ +K G V N L+DVYA C
Sbjct: 300 L-DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCG-D 357
Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
M AR VFN M+ K+ VSW ++I+GY SG+ + +FK M++ + + ++ + +
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417
Query: 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITW 283
+ FGK +H+ IK G +L V N+++DMY + + D+ + F M D +TW
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477
Query: 284 NTIIAGYEKSGS-SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR 342
NT+I+ + G + L + ++M+ P+ TF + CA+LAA G+++H ++R
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537
Query: 343 RGLDGXXXXXXXXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
G + I+MY+KCG + +S ++F MS RD+VTWT M+ YG +G G++A+E
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALET 597
Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLG 461
F +M KSG+ PD +VF+A++ ACSH+GLVDEGL F+ M Y ++P E Y CVVDLL
Sbjct: 598 FADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLS 657
Query: 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYII 521
R+ ++ +A E I++MP KPD S+W +L AC+ + + R+++L P+ G I+
Sbjct: 658 RSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSIL 717
Query: 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGV 581
SN YAA KW++ + RK ++ K G SWIEV V F + D ++ +Y
Sbjct: 718 ASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKS 777
Query: 582 LEMLIRHMNETAYEPDIDCLIHDLEGE 608
LE+L M + Y PD + +LE E
Sbjct: 778 LEILYSLMAKEGYIPDPREVSQNLEEE 804
|
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| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 196/540 (36%), Positives = 309/540 (57%)
Query: 52 LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
LI SY G + A LF+ MP ++++SWT +++GY H +A +F M + + P+
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349
Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARLV 170
+ SS+L +C + +L VH IK L YV NSL+D+YA C C++ +AR V
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT--DARKV 407
Query: 171 FNDMKWKNDVSWTTLITGYAHSGNGYG---GLGVFKEMLLEGVEMNPYSFSIAVRACAST 227
F+ + V + +I GY+ G + L +F++M + + +F +RA AS
Sbjct: 408 FDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASL 467
Query: 228 GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
+ K IH + K+G ++ ++++D+Y CL D+ FDEM KDL+ WN++
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527
Query: 288 AGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346
AGY ++S + E LN+F +++ R P+ FTF +++ A LA++ GQ+ H +++RGL+
Sbjct: 528 AGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587
Query: 347 GXXXXXXXXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406
+DMYAKCG+ D+ K F + RD+V W S++ Y HG GK+A+++ ++M
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKM 647
Query: 407 VKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466
+ G+ P+ I F+ VL+ACSHAGLV++GLK F+ M + + P E Y C+V LLGRAGR+
Sbjct: 648 MSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRL 707
Query: 467 KEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526
+A ELI+ MP KP VW LL C + L + AA + P G++ +LSNIY
Sbjct: 708 NKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIY 767
Query: 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLI 586
A++G W E K R+ M+ G KE G SWI + +V F++ DK +Y VL+ L+
Sbjct: 768 ASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLL 827
|
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| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 152/379 (40%), Positives = 226/379 (59%)
Query: 233 GKLIHA-AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
GK A A+ + +L N++L Y + +A F EM EK++++W +I+G
Sbjct: 334 GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLA 393
Query: 292 KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGXXX 350
++G E L +FS MK E F P + F+ I +CA L A GQQ HA +++ G D
Sbjct: 394 ENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLS 453
Query: 351 XXXXXIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
I MYAKCG + +++++F M D V+W +++ G HGHG EA+++++EM+K G
Sbjct: 454 AGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKG 513
Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDLLGRAGRVKEA 469
+RPDRI + VLTACSHAGLVD+G KYF SM Y + P + Y ++DLL R+G+ +A
Sbjct: 514 IRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDA 573
Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
+I+S+PFKP +W LL C+ H LG +AA ++ L P GTY++LSN++AA
Sbjct: 574 ESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAAT 633
Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
G+WEE A+ RK+MR G KKEV SWIE+ +V F+ +D + VY L+ L + M
Sbjct: 634 GQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693
Query: 590 NETAYEPDIDCLIHDLEGE 608
Y PD ++HD+E +
Sbjct: 694 RRLGYVPDTSFVLHDVESD 712
|
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| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 8.8e-96, Sum P(2) = 8.8e-96
Identities = 174/449 (38%), Positives = 261/449 (58%)
Query: 175 KWKNDV-SWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
K K DV +W+ I+GYA G GY LGV ++ML G++ N + + CAS G + G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Query: 234 KLIHAAVIKH-------GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT--EKDLITWN 284
K IH IK+ G G V+N ++DMY + + A FD ++ E+D++TW
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 285 TIIAGYEKSG-SSECLNMFSKMKSE--RFSPNCFTFTSIIAACATLAALSCGQQVHAGIV 341
+I GY + G +++ L + S+M E + PN FT + + ACA+LAAL G+Q+HA +
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYAL 504
Query: 342 RRGLDGXXXXXXX-XIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAI 400
R + IDMYAKCG+ISD++ +F M ++ VTWTS+M GYG HG+G+EA+
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEAL 564
Query: 401 ELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND-YNVNPNKEIYGCVVDL 459
+FDEM + G + D + + VL ACSH+G++D+G++YF M + V+P E Y C+VDL
Sbjct: 565 GIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDL 624
Query: 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519
LGRAGR+ A LI+ MP +P VW L C+ H LG+ AA ++ +L N G+Y
Sbjct: 625 LGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSY 684
Query: 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVY 579
+LSN+YA G+W++ + R +MR G KK G SW+E F DK H + +Y
Sbjct: 685 TLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIY 744
Query: 580 GVLEMLIRHMNETAYEPDIDCLIHDLEGE 608
VL ++ + + Y P+ +HD++ E
Sbjct: 745 QVLLDHMQRIKDIGYVPETGFALHDVDDE 773
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FXA9 | PPR83_ARATH | No assigned EC number | 0.6026 | 0.9671 | 0.9639 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00022576001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (607 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 609 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-148 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-116 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-69 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-56 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-50 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-31 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 448 bits (1154), Expect = e-148
Identities = 206/545 (37%), Positives = 313/545 (57%), Gaps = 5/545 (0%)
Query: 52 LIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN 111
LI Y G + AR +FD MP RD +SW MI+GY + +F M V+P+
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 112 AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVF 171
T++SV+ AC+ + +HG +K G + V NSL+ +Y + S A VF
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-SWGEAEKVF 346
Query: 172 NDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS 231
+ M+ K+ VSWT +I+GY +G L + M + V + + + + ACA G +
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 232 FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYE 291
G +H + G S + V N++++MY + C+ A + F + EKD+I+W +IIAG
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466
Query: 292 KSGSS-ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350
+ E L F +M PN T + ++ACA + AL CG+++HA ++R G+ +
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410
L NAL+D+Y +CG ++ + F+ ++D+V+W ++ GY AHG G A+ELF+ MV+SG
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
V PD + F+++L ACS +G+V +GL+YF SM Y++ PN + Y CVVDLLGRAG++ EA
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529
Y I MP PD +VWG LL AC+ HR LG+LAA + +L PN +G YI+L N+YA
Sbjct: 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704
Query: 530 GKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHM 589
GKW+E A+ RK MR G + G SW+EV+ KV F+ +D+ + + VLE M
Sbjct: 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764
Query: 590 NETAY 594
+
Sbjct: 765 KASGL 769
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 360 bits (925), Expect = e-116
Identities = 160/494 (32%), Positives = 287/494 (58%), Gaps = 3/494 (0%)
Query: 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFND 173
T ++++AC +KS+ V+ G E Y+ N ++ ++ C + +D AR +F++
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID-ARRLFDE 183
Query: 174 MKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233
M +N SW T+I G +GN +F+EM +G + P +F + +RA A G G
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKS 293
+ +H V+K G + V +++DMY + + DA FD M EK + WN+++AGY
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 294 G-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA 352
G S E L ++ +M+ S + FTF+ +I + LA L +Q HAG++R G ++
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
AL+D+Y+K G + D++ +F M ++L++W +++ GYG HG G +A+E+F+ M+ GV
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
P+ + F+AVL+AC ++GL ++G + F+SM+ ++ + P Y C+++LLGR G + EAY
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531
+I+ PFKP ++W LL AC+ H+ LG+LAA ++ + P + Y++L N+Y + G+
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543
Query: 532 WEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591
E AK + ++ G +WIEV+ + F + D++ ++ +Y L+ L++ ++E
Sbjct: 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603
Query: 592 TAYEPDIDCLIHDL 605
Y + + L+ D+
Sbjct: 604 YGYVAEENELLPDV 617
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 1e-69
Identities = 133/444 (29%), Positives = 232/444 (52%), Gaps = 19/444 (4%)
Query: 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
G + A +F +MPERD+ SW V++ GY ++A ++ M+ V P+ +T VL
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
+ C G+ L+ VH ++ G E + V N+L+ +Y C + +ARLVF+ M ++
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDC 253
Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
+SW +I+GY +G GL +F M V+ + + + + AC G G+ +H
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSE-C 298
V+K GF ++ V NS++ MY +A + F M KD ++W +I+GYEK+G +
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373
Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358
L ++ M+ + SP+ T S+++ACA L L G ++H R+GL + +ANALI+M
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 359 YAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418
Y+KC I + ++F + ++D+++WTS++ G + EA+ F +M+ + ++P+ +
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492
Query: 419 MAVLTACSHAGLVDEG-------LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
+A L+AC+ G + G L+ + + PN ++DL R GR+ A+
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGF--LPN-----ALLDLYVRCGRMNYAWN 545
Query: 472 LIKSMPFKPDESVWGPLLGACKEH 495
S + D W LL H
Sbjct: 546 QFNSH--EKDVVSWNILLTGYVAH 567
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 6e-56
Identities = 117/428 (27%), Positives = 212/428 (49%), Gaps = 16/428 (3%)
Query: 95 QAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154
QA + M V + ++ + C+ +++ + V A+ + + N+++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP 214
++ + +A VF M ++ SW L+ GYA +G L ++ ML GV +
Sbjct: 129 SMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187
Query: 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE 274
Y+F +R C ++ G+ +HA V++ GF ++ V+N+++ MY + + A FD
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 275 MTEKDLITWNTIIAGY-EKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333
M +D I+WN +I+GY E E L +F M+ P+ T TS+I+AC L G
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393
+++H +V+ G ++++ N+LI MY G+ +++K+FS M +D V+WT+M+ GY +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF-----KSMNDYNVNP 448
G +A+E + M + V PD I +VL+AC+ G +D G+K K + Y V
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR- 507
N ++++ + + +A E+ ++P K S + G +R L R
Sbjct: 428 NA-----LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR--CFEALIFFRQ 480
Query: 508 -VLDLKPN 514
+L LKPN
Sbjct: 481 MLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 4e-50
Identities = 87/267 (32%), Positives = 151/267 (56%), Gaps = 2/267 (0%)
Query: 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119
G++ +AR LFDEMPER++ SW +I G + +A+ +F EM + + T +L
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 120 KACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179
+A G+ S +H +K G+ G +V +L+D+Y+ C +++AR VF+ M K
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGMPEKTT 290
Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAA 239
V+W +++ GYA G L ++ EM GV ++ ++FSI +R + + K HA
Sbjct: 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 240 VIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSEC 298
+I+ GF ++ +++D+Y ++ + DA FD M K+LI+WN +IAGY G ++
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410
Query: 299 LNMFSKMKSERFSPNCFTFTSIIAACA 325
+ MF +M +E +PN TF ++++AC
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 4e-49
Identities = 103/350 (29%), Positives = 187/350 (53%), Gaps = 10/350 (2%)
Query: 51 NLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110
+LI+ Y G EA +F M +D VSWT MI+GY ++A + M ++ V+P
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC-CISMDNARL 169
+ T++SVL AC + L +H +A ++GL + V N+L+++Y+ C CI D A
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI--DKALE 445
Query: 170 VFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
VF+++ K+ +SWT++I G + + L F++MLL ++ N + A+ ACA G
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGA 504
Query: 230 VSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDA-NQYFDEMTEKDLITWNTIIA 288
+ GK IHA V++ G G + + N++LD+Y R ++ A NQ+ EKD+++WN ++
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF--NSHEKDVVSWNILLT 562
Query: 289 GYEKSGSSE-CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV-HAGIVRRGLD 346
GY G + +F++M +P+ TF S++ AC+ ++ G + H+ + +
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 347 GNLALANALIDMYAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGH 395
NL ++D+ + G ++++ ++M D W +++ H H
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-31
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 44 GPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEM 103
G + ++ LI Y G IE+AR +FD MPE+ V+W M+AGY +A ++ EM
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 104 VRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163
+ V+ + FT S +++ + L +A H I+ G I +L+D+Y+
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-R 375
Query: 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA 223
M++AR VF+ M KN +SW LI GY + G G + +F+ M+ EGV N +F + A
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 224 CASTGWVSFGKLI 236
C +G G I
Sbjct: 436 CRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 6e-27
Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 5/245 (2%)
Query: 47 ILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN 106
++A LI+ Y I++A +F +PE+DV+SWT +IAG N +F +
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL-RLNNRCFEALIFFRQMLL 483
Query: 107 EVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDN 166
+ PN+ TL + L AC + +L +H ++ G+ ++ N+L+D+Y C M+
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNY 542
Query: 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
A FN + K+ VSW L+TGY G G + +F M+ GV + +F + AC+
Sbjct: 543 AWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 227 TGWVSFG-KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWN 284
+G V+ G + H+ K+ NL ++D+ R L++A + ++M D W
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 285 TIIAG 289
++
Sbjct: 662 ALLNA 666
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 5e-14
Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 20/229 (8%)
Query: 279 DLITWNTIIAGYEKSGSSECL-NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337
D + T+I+ KSG + + +F +M + N TF ++I CA GQ
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA-----RAGQVAK 525
Query: 338 A----GIVR-RGLDGNLALANALIDMYAKCGNISDSQKIFSEMS------DRDLVTWTSM 386
A GI+R + + + + NALI + G + + + +EM D D +T ++
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446
M G A E++ + + ++ V+ + +CS G D L + M V
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGAC 492
P++ + +VD+ G AG + +A+E+++ K + L+GAC
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 6e-14
Identities = 99/423 (23%), Positives = 171/423 (40%), Gaps = 88/423 (20%)
Query: 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMD--NARLVFND 173
+ KACK +++ A K ++ N LM V C S D A V
Sbjct: 410 AKFFKACKKQRAVKEAFRF----AKLIRNPTLSTFNMLMSV---CASSQDIDGALRVLRL 462
Query: 174 MK---WKND-VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGW 229
++ K D +TTLI+ A SG VF EM+ GVE N ++F + CA G
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522
Query: 230 V--SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTII 287
V +FG +G +M S + + D + +N +I
Sbjct: 523 VAKAFG----------AYG----IMRS-------------------KNVKPDRVVFNALI 549
Query: 288 AGYEKSGS-SECLNMFSKMKSER--FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344
+ +SG+ ++ ++MK+E P+ T +++ ACA + ++V+ I
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404
+ G + ++ ++ G+ + A+ ++D
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDW-----------------------DF--------ALSIYD 638
Query: 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464
+M K GV+PD + F A++ HAG +D+ + + + Y ++ A
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 465 RVKEA---YELIKSMPFKPDESVWGPLLGA-CKEHRLPN-LGKLAALRVLDLKPNMMGTY 519
K+A YE IKS+ +P S L+ A C+ ++LP L L+ ++ L L PN + TY
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-TY 757
Query: 520 IIL 522
IL
Sbjct: 758 SIL 760
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 14/223 (6%)
Query: 265 LSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFS-----PNCFTFTS 319
+ D ++M ++ L+ + I Y C + ++ RF+ P TF
Sbjct: 386 IKDCIDLLEDMEKRGLLDMDKI---YHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNM 442
Query: 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS--- 376
+++ CA+ + +V + GL + L LI AK G + ++F EM
Sbjct: 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502
Query: 377 -DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435
+ ++ T+ +++ G G +A + M V+PDR+VF A+++AC +G VD
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562
Query: 436 KYFKSMN--DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476
M + ++P+ G ++ AG+V A E+ + +
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 65/370 (17%), Positives = 134/370 (36%), Gaps = 74/370 (20%)
Query: 99 VFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158
VF EMV V N T +++ C ++ A +G+ + ++ V N+L+
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI---- 549
Query: 159 TCCI---SMDNARLVFNDMKWK------NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG 209
+ C ++D A V +MK + + ++ L+ A++G V++ +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269
++ P ++IAV +C+ G F I+ + K G
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP---------------------- 647
Query: 270 QYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329
DE+ L+ +AG+ + + + + +++S++ AC+
Sbjct: 648 ---DEVFFSALVD----VAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIG 389
+++ I L ++ NAL + A C + + +
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNAL--ITALC--------------EGNQLP------- 736
Query: 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449
+A+E+ EM + G+ P+ I + +L A D GL + + PN
Sbjct: 737 --------KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 450 KEIYGCVVDL 459
+ C+ L
Sbjct: 789 LVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACA 325
D++T+NT+I GY K G E L +F++MK PN +T++ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427
D+VT+ +++ GY G +EA++LF+EM K G++P+ + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122
DVV++ +I GY +A +F EM + + PN +T S ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411
VT+ S++ GY G +EA+ELF EM + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414
VT+ +++ G G +EA+ELF EM + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225
+ V++ TLI GY G L +F EM G++ N Y++SI +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 45 PSILATN-LIKSYFDEGLIEEARTLFDEMPER----DVVSWTVMIAGY 87
P ++ N LI Y +G +EEA LF+EM +R +V +++++I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 66/348 (18%), Positives = 133/348 (38%), Gaps = 73/348 (20%)
Query: 95 QAWTVFVEMVRNE---VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151
+A+ V EM + E ++P+ T+ +++KAC + A V+ M + ++G+
Sbjct: 560 RAFDVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT----- 613
Query: 152 SLMDVYA----TCCIS--MDNARLVFNDMKWK----NDVSWTTLITGYAHSGNGYGGLGV 201
+VY +C D A +++DMK K ++V ++ L+ H+G+ +
Sbjct: 614 --PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261
++ +G+++ S+S + AC++ ++ + + MN+++ C
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 262 FDCLSDANQYFDEMTEKDL------ITWNTIIAGYEKSGSSEC-LNMFSKMKSERFSPNC 314
+ L A + EM K L IT++ ++ E+ ++ L++ S+ K + PN
Sbjct: 732 GNQLPKALEVLSEM--KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
Query: 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE 374
I C R + AL ++ G K
Sbjct: 790 VMCRCITGLC-----------------LRRFEKACALGEPVVSF--DSGRPQIENK---- 826
Query: 375 MSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422
WTS A+ ++ E + +G P V VL
Sbjct: 827 --------WTSW------------ALMVYRETISAGTLPTMEVLSQVL 854
|
Length = 1060 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 1e-04
Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 11/225 (4%)
Query: 348 NLALANALIDMYAKCGNISDSQKIF-----SEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402
L L K G + ++ ++ E+ ++ + A G +EA+EL
Sbjct: 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117
Query: 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-----YGCVV 457
++ + PD + L A G +E L+ ++ + + N+ G ++
Sbjct: 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177
Query: 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517
+ LGR E E + D L + + L+L P+
Sbjct: 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAE 237
Query: 518 TYIILSNIYAAEGKWEEFAK-FRKIMRGMGSKKEVGMSWIEVRDK 561
L+ + G++EE + K + +G++ + + +
Sbjct: 238 ALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAE 282
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 353 NALIDMYAKCGNISDSQKIFSEMSDR----DLVTWTSMMIGY 390
N LID Y K G + ++ K+F+EM R ++ T++ ++ G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210
V++ +LI+GY +G L +FKEM +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 252 MNSILDMYCRFDCLSDANQYFDEMTEK----DLITWNTIIAGY 290
N+++D YC+ + +A + F+EM ++ ++ T++ +I G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.32 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.06 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.92 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.9 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.84 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.21 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.17 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.81 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.51 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.43 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.36 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.3 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.14 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.11 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.99 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.73 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.69 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.55 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.06 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 96.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.87 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.64 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.52 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.47 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.23 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.01 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.9 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.88 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.27 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.25 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.22 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.92 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.64 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.19 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.17 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.15 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.14 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.88 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.14 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.06 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.8 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.62 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.43 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.92 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.91 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.8 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 90.8 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.6 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.53 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.02 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.62 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.84 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.64 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.6 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.44 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.94 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.91 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.03 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.98 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.95 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.13 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 84.91 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.87 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.85 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.44 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.64 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.6 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.35 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.4 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.09 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.37 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.2 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.11 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.79 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 80.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.47 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.25 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-90 Score=753.84 Aligned_cols=561 Identities=37% Similarity=0.686 Sum_probs=552.8
Q ss_pred CCCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 41 IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 41 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
+..||+.++|+||.+|+++|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (609)
+|++.|+++.+.+++..|.+.|+.||..+||+|+.+|++.| ++++|.++|++|..+|..+||++|.+|++.|++++|++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 007288 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280 (609)
Q Consensus 201 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 280 (609)
+|++|...|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007288 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (609)
++|+.+|.+|++.| .++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 99999999999999 9999999999986 599999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 360 AKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 440 SMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 440 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.|. +.|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+++.+.++...+++++++|++...
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 996 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCc
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDI 598 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~ 598 (609)
|..|+++|++.|+|++|.++.+.|+++|++++|+++|+++++++|.|+++|.+||+..++|+.+.++..+|++.||+||+
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 007288 599 DCLIHD 604 (609)
Q Consensus 599 ~~~~~~ 604 (609)
..++++
T Consensus 774 ~~~~~~ 779 (857)
T PLN03077 774 SSSMDE 779 (857)
T ss_pred chhccc
Confidence 998854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-84 Score=692.73 Aligned_cols=535 Identities=31% Similarity=0.614 Sum_probs=525.3
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhH
Q 007288 74 ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS 152 (609)
Q Consensus 74 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (609)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchh
Q 007288 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232 (609)
Q Consensus 153 ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 232 (609)
++.+|++.| +++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCC
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS 311 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~ 311 (609)
+.+++..+.+.|+.+|..+|++|+++|+++|++++|.++|+.|.++|.++||.++.+|++.| .++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007288 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYG 391 (609)
Q Consensus 312 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 391 (609)
||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-hcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-DYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999995 5799999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccc
Q 007288 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKE 550 (609)
Q Consensus 471 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 550 (609)
+++++|+..|+..+|++|+.+|..+|+++.|..+++++.++.|++..+|..|+++|++.|+|++|.++++.|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCcccccccCCCCC
Q 007288 551 VGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGET 609 (609)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~ 609 (609)
|+++|+++++.+|.|+++|.+||+..++++.+.++..+|++.||+||+.+++|||+++|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-76 Score=644.01 Aligned_cols=541 Identities=27% Similarity=0.494 Sum_probs=511.3
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (609)
+.+++.++|+|+++|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
|+..+++..+.+++..|.+.|+.|+..++++|+.+|++.| +++.|.++|++|+.+|..+||++|.+|++.|++++|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 007288 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI 281 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 281 (609)
|++|...|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.++|.+
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (609)
+||.++.+|++.| .++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 5999999999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc--cCCCCcch
Q 007288 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD--LKPNMMGT 518 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~ 518 (609)
+.+.|+.+|..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+ ..| |..+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T 591 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVT 591 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-Cccc
Confidence 999999999999999999999999999999999998 79999999999999999999999999999987 456 7899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-hCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccC
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMR-GMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPD 597 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 597 (609)
|..++.+|.+.|++++|.++|+.|. +.|+.|+...... ++......+...+++ +++++| +++||
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~eA~----~~~~~m---~~~pd 656 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTEAY----NFINKM---PITPD 656 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHHHH----HHHHHC---CCCCC
Confidence 9999999999999999999999999 6788776533111 223333444555543 555555 57888
Q ss_pred ccccc
Q 007288 598 IDCLI 602 (609)
Q Consensus 598 ~~~~~ 602 (609)
...|-
T Consensus 657 ~~~~~ 661 (857)
T PLN03077 657 PAVWG 661 (857)
T ss_pred HHHHH
Confidence 77653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=572.91 Aligned_cols=551 Identities=14% Similarity=0.202 Sum_probs=491.9
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcc-----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVV-----SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 116 (609)
..++...|..++..|++.|++++|+++|++|.+++.. .++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4567888999999999999999999999999876554 456777889999999999999999974 8999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCC----CCChhhHHHHHHHHHhc
Q 007288 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK----WKNDVSWTTLITGYAHS 192 (609)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 192 (609)
.+|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.| +++.|.++|++|. .||..+|+.+|.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 9999999999997 47999999999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007288 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK--HGFGSNLPVMNSILDMYCRFDCLSDANQ 270 (609)
Q Consensus 193 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (609)
|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHHhcCC----CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 007288 271 YFDEMTE----KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 271 ~~~~~~~----~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 345 (609)
+|+.|.+ ++..+|+.+|.+|++.| .++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999975 56799999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
.|+..+|++|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHHHhC--
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG----RAG-------------------RVKEAYELIKSM-- 476 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~-- 476 (609)
+.+|++.|++++|.+++++|.+.|+.||..+|++++..|. +++ ..++|+.+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987643 222 246799999999
Q ss_pred -CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCcee
Q 007288 477 -PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMS 554 (609)
Q Consensus 477 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 554 (609)
++.||..||+.++.++...+..+.+..+++.+.. -.+++..+|+.+++++.+. .++|..++++|.+.|+.|+....
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccc
Confidence 8999999999999888888999999888887643 3445788999999998432 36899999999999998776421
Q ss_pred EEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcC-cccCccccccc
Q 007288 555 WIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA-YEPDIDCLIHD 604 (609)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g-~~pd~~~~~~~ 604 (609)
.....-.++.| +-+.+..+.-.|..-+.+..++| --|.....++.
T Consensus 919 ~~~~~~d~~~~-----~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 919 KSPIVIDAEEL-----PVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred cCceEEEcccC-----cchhHHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 11111122222 33355666666666666666777 44555554554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=538.00 Aligned_cols=483 Identities=14% Similarity=0.211 Sum_probs=450.8
Q ss_pred HHhhHHHhhhhcccCCCCCCCCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 007288 22 IKQSLQSVKKSSIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFV 101 (609)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 101 (609)
+..++..|..+.... ...++..+++.++..|.+.|.+++|.++|+.|..||..+||.+|.+|++.|+++.|.++|+
T Consensus 386 l~eAl~Lfd~M~~~g----vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 386 IKDCIDLLEDMEKRG----LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 445555555554332 2346788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCC----CC
Q 007288 102 EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK----WK 177 (609)
Q Consensus 102 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~----~~ 177 (609)
.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.| ++++|.++|+.|. .|
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999995 47
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLL--EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 255 (609)
|..+||.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999999999999999999999999986 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 256 LDMYCRFDCLSDANQYFDEMTE----KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 256 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.| .++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999974 79999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++.+|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 489999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 407 VKSGVRPDRIVFMAVLTACSH----A-------------------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 407 ~~~g~~p~~~~~~~ll~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.|+.||..+|+.++.++++.
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence 999999999999999876542 1 12467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 464 GRVKEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 464 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
+..+.+..+++.| +..|+..+|++|+.++.+. .++|..+++++.+.
T Consensus 861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 9999999999998 4566789999999998432 46899999999774
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=509.49 Aligned_cols=405 Identities=24% Similarity=0.481 Sum_probs=394.0
Q ss_pred CCCCChhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 41 IPKGPSILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 41 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
+..||+.+||.|+++|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLG 200 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 200 (609)
+|+..|..+.+.+++..+.+.|+.||..++++|+++|+++| ++++|.++|++|.++|+.+||++|.+|++.|++++|++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 007288 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL 280 (609)
Q Consensus 201 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 280 (609)
+|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.++|.
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 007288 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVR-RGLDGNLALANALIDM 358 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 358 (609)
.+||.||.+|++.| .++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
|++.|++++|.++++++. +|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+..|++.|++++|.+
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999999999997 68999999999999999999999999999975 5564 5699999999999999999999
Q ss_pred HHHHhhhcCCCC
Q 007288 437 YFKSMNDYNVNP 448 (609)
Q Consensus 437 ~~~~~~~~~~~~ 448 (609)
+++.|.+.|+..
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999888753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=285.68 Aligned_cols=494 Identities=12% Similarity=0.061 Sum_probs=379.2
Q ss_pred CChhHHhHHHHHHHccCChhHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 44 GPSILATNLIKSYFDEGLIEEARTLFDEMPE--R-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
.+..++..+...|.+.|++++|.+.|+++.+ | +...|..+...+...|++++|.+.|+.+.+.... +......++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHH
Confidence 3567888999999999999999999998764 3 4556778888888999999999999988875432 2344556677
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhh
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYG 197 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 197 (609)
.+.+.|++++|..+++.+.+.. +.+..++..+...+...| ++++|...|+++.+ .+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888888887654 346678888888888888 88888888887643 355667778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007288 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277 (609)
Q Consensus 198 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 277 (609)
|.+.|+++...+ +.+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888887754 3356677778888888888888888888887764 55666777888888888888888888887753
Q ss_pred ---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHH
Q 007288 278 ---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353 (609)
Q Consensus 278 ---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (609)
.+...|..+...+...| +++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+.
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 35667888888888888 888888888887643 2345567777778888888888888888877654 44567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 430 (609)
.++..+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|+
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence 888888888888888888888764 34556777777788888888888888888774 3555667777788888888
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++ .. .++...+..+...+...|+ .+|+..++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 888888888876543 346777777888888888888888888777 22 3356677777777888887 7788888888
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
++..|+++..+..++.+|...|++++|.++++++.+.++.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888877778888888888888888888888888776653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=284.13 Aligned_cols=491 Identities=12% Similarity=0.024 Sum_probs=412.6
Q ss_pred ChhHHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007288 45 PSILATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121 (609)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (609)
+...+..+...+.+.|++++|...++.+.. .+...++.+...+.+.|++++|.++|+++.+... .+...+..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 456777888999999999999999988764 3456788888999999999999999999987532 245567777788
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhH
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGG 198 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 198 (609)
+...|++++|...++.+.+.... .......++..+.+.| ++++|..+++.+.. .+...|+.+...+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG-QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence 88999999999999999887644 3445666788888998 99999999988764 3667899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 007288 199 LGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE- 277 (609)
Q Consensus 199 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 277 (609)
.+.|+++.... +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.+
T Consensus 485 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998753 3355667778888899999999999999998875 56788889999999999999999999998854
Q ss_pred --CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHH
Q 007288 278 --KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354 (609)
Q Consensus 278 --~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (609)
.+...+..+...+...| .++|..+++++.... +.+...|..+...+...|+++.|...++.+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 35567788889999999 999999999988643 4567788899999999999999999999988765 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 431 (609)
+..++.+.|++++|...|+.+.+ .+..++..++..+...|++++|..+++.+.+.+ .++...+..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 99999999999999999998864 356788889999999999999999999998864 45667888888899999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
++|...|+.+...+ |+..++..+...+.+.|++++|.+.++++ . ...+...+..+...|...|++++|...+++++
T Consensus 720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999997654 45577778899999999999999999887 2 33456778888888999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 510 DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 510 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+..|+++..+..++.++...|+ .+|+.++++..+..
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999999999999999 88999999988753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-22 Score=222.84 Aligned_cols=491 Identities=9% Similarity=0.038 Sum_probs=308.2
Q ss_pred ChhHHhHHHHHHHccCChhHHHHhhccCCC--CCcccH-----------------HHHHHHHHcCCChhHHHHHHHHHHH
Q 007288 45 PSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSW-----------------TVMIAGYTSFNCHNQAWTVFVEMVR 105 (609)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~ 105 (609)
|+.++..++..+.+.|+.++|.+.++++.+ |+...+ ....+.+...|++++|...|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 566778888999999999999999998874 433222 2233467788999999999999887
Q ss_pred CCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCCh-----
Q 007288 106 NEVNPNAF-TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND----- 179 (609)
Q Consensus 106 ~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~----- 179 (609)
.+ +|+.. ............|+.++|...++.+.+..+. +...+..+...+...| +.++|+..|+++.....
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g-~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSG-RRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCchHHH
Confidence 53 22322 1111222233568899999999999887644 5667778888888888 99999888877532100
Q ss_pred ------------------hhHH----------------------------------HHHHHHHhcCChhhHHHHHHHHHH
Q 007288 180 ------------------VSWT----------------------------------TLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 180 ------------------~~~~----------------------------------~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
..+. .....+...|++++|+..|++...
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0000 112345567888888888888877
Q ss_pred CCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC-ChhHH------------HHHHHHHHhcCCHHHHHHHHHh
Q 007288 208 EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-NLPVM------------NSILDMYCRFDCLSDANQYFDE 274 (609)
Q Consensus 208 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~ 274 (609)
.. +.+...+..+...+.+.|++++|...|++..+..... ....+ ......+.+.|++++|...|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 53 2266777778888888888888888888887754221 11111 1224456778888888888887
Q ss_pred cCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhHHHHHHHH-------------------------
Q 007288 275 MTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTFTSIIAAC------------------------- 324 (609)
Q Consensus 275 ~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~------------------------- 324 (609)
..+ .+...+..+...+...| .++|++.|++..+.. |+ ...+..+...+
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 754 24556667777888888 888888888877642 32 33333333322
Q ss_pred -----------------HhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHH
Q 007288 325 -----------------ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWT 384 (609)
Q Consensus 325 -----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 384 (609)
...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++.+.+ | +...+.
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 23344444444444444432 12233344444444445555555544444431 1 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI---------VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
.+...+...++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~ 608 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHH
Confidence 22233334444444444444332211111110 111233445556666666666551 2345556667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
+...+.+.|++++|++.|++. ...| +...+..+...+...|++++|+..++++.+..|++...+..++.++...|+++
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 788888888888888888877 3445 45677778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 007288 534 EFAKFRKIMRGMGS 547 (609)
Q Consensus 534 ~A~~~~~~m~~~~~ 547 (609)
+|.++++++.....
T Consensus 689 eA~~~~~~al~~~~ 702 (1157)
T PRK11447 689 AAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhhhCc
Confidence 88888888876543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-21 Score=217.37 Aligned_cols=485 Identities=11% Similarity=0.057 Sum_probs=334.9
Q ss_pred HhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchH----------
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTL---------- 115 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~---------- 115 (609)
.-..++.+...++.+.|.+.++++.. .|+..+..++..+.+.|+.++|...+++..+. .|+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhc
Confidence 44566788889999999999998763 35677888999999999999999999999985 3444333
Q ss_pred -------HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHH-HHhcCCCHHHHHHHHccCCCC---ChhhHHH
Q 007288 116 -------SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV-YATCCISMDNARLVFNDMKWK---NDVSWTT 184 (609)
Q Consensus 116 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~~A~~~~~~~~~~---~~~~~~~ 184 (609)
..+...+...|++++|.+.++.+.+.+.+ +...-...... ....| +.++|++.|+++... +...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 22334578899999999999999876543 22211112222 22346 999999999988753 5667888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCC------------------C--------------CCHhhH----H----------
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGV------------------E--------------MNPYSF----S---------- 218 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~------------------~--------------p~~~t~----~---------- 218 (609)
+...+...|+.++|++.++++..... . |+...+ .
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998754321 0 111000 0
Q ss_pred -------HHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhHHHHH
Q 007288 219 -------IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KD---LITWNTI 286 (609)
Q Consensus 219 -------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~l 286 (609)
.....+...|++++|...+++.++.. +.+..++..+..+|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11233556789999999999988864 55778888899999999999999999988754 21 1122222
Q ss_pred ------------HHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHH
Q 007288 287 ------------IAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353 (609)
Q Consensus 287 ------------i~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (609)
...+.+.| .++|...|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 33566778 899999999988753 2345566777888889999999999999988764 23344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC------------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDRD------------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMA 420 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 420 (609)
.+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 5555543 334555555555443210 112333444555566666666666666553 332 334455
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH--------------------------------------------HHH
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY--------------------------------------------GCV 456 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------------------------~~l 456 (609)
+...|.+.|++++|...++++.+... .+...+ ..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 55566666666666666666543221 112111 123
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 457 VDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
...+...|+.++|+++++.-+ ++...+..+...+.+.|++++|+..++++++..|+++..+..++.+|...|++++|.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445666777777777777432 244556677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 007288 537 KFRKIMRGMG 546 (609)
Q Consensus 537 ~~~~~m~~~~ 546 (609)
+.+++..+..
T Consensus 658 ~~l~~ll~~~ 667 (1157)
T PRK11447 658 AQLAKLPATA 667 (1157)
T ss_pred HHHHHHhccC
Confidence 9999887643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=177.96 Aligned_cols=447 Identities=13% Similarity=0.096 Sum_probs=327.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 007288 83 MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCI 162 (609)
Q Consensus 83 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 162 (609)
+..-..+.|++++|.+.-...-+.+ ..+..+.-.+-..+....+++...+.-....+... .-..+|+.+...+-..|
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg- 130 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERG- 130 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhc-
Confidence 3334455666666666544333221 11222222222334444444444333333332221 13456666666666666
Q ss_pred CHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCchhHHHHHH
Q 007288 163 SMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS-IAVRACASTGWVSFGKLIHA 238 (609)
Q Consensus 163 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~ 238 (609)
++++|+..++.+.+ ..+..|-.+..++...|+.+.|.+.|.+..+. .|+..... .+...+...|++++|..-|.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 77777777766543 25667888888888888888888888887764 55555433 33344455788888888888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-
Q 007288 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN- 313 (609)
Q Consensus 239 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~- 313 (609)
+.++.. +-=..+|+.|...+-..|+...|+..|++...-| ...|-.|...|...+ +++|+..|.+.... .|+
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 877763 3335678888888888899999988888876533 356777888888888 88888888877653 454
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHH
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGY 390 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 390 (609)
...+..+...|-..|.++.|+..+++..+.. +.-...|+.|.+++-..|++.+|.+.|..... | ...+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4566667777788899999999999888764 33467889999999999999999999998874 3 446788899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 468 (609)
...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|-..|+.+.
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 56665 4889999999999999999999999876 5566 5688999999999999999
Q ss_pred HHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 469 AYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 469 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
|++.+.+. .+.|. ....+.|...|...|+..+|+..|+.+++++|+.+.+|..++.++.--.+|.+=-+.++++
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 99999887 67775 4577888999999999999999999999999999999999999988777776643333333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-18 Score=186.21 Aligned_cols=486 Identities=9% Similarity=-0.006 Sum_probs=332.0
Q ss_pred CCCCCCChhHHhHHHHHHH--ccCChhHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc
Q 007288 39 PLIPKGPSILATNLIKSYF--DEGLIEEARTLFDEMPE--R-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF 113 (609)
Q Consensus 39 ~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 113 (609)
|..+-..-.++-.+..++. ..|++++|+..|+...+ | +..++..+...|.+.|++++|+..+++..+. .|+..
T Consensus 35 ~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~ 112 (987)
T PRK09782 35 GLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDA 112 (987)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 4444344444444555444 34999999999998874 3 4567888999999999999999999999985 55555
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHH--------HHhcCCCHHHHHHHHccCCCC--ChhhHH
Q 007288 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV--------YATCCISMDNARLVFNDMKWK--NDVSWT 183 (609)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~~A~~~~~~~~~~--~~~~~~ 183 (609)
.|..++..+ +++++|..+++++.+..+. +..++..+... |.+.+ ...++++ .+...+ +.....
T Consensus 113 ~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~e-qAl~AL~--lr~~~~~~~~~vL~ 185 (987)
T PRK09782 113 RLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLP-VARAQLN--DATFAASPEGKTLR 185 (987)
T ss_pred HHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHH-HHHHHHH--HhhhCCCCCcHHHH
Confidence 555555333 8889999999999998654 34455444444 66655 6666665 222233 333344
Q ss_pred H-HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-cCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 184 T-LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS-TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 184 ~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
. +...|.+.|++++|++++.++.+.+.. +..-...+..++.. .++ +.+..+++. .+..+..+...+...|.+
T Consensus 186 L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~ 259 (987)
T PRK09782 186 TDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAY 259 (987)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHH
Confidence 4 489999999999999999999998644 34445556666666 466 777777543 334678888999999999
Q ss_pred cCCHHHHHHHHHhcCC-----CChhHHH------------------------------HHHHHH----------------
Q 007288 262 FDCLSDANQYFDEMTE-----KDLITWN------------------------------TIIAGY---------------- 290 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~-----~~~~~~~------------------------------~li~~~---------------- 290 (609)
.|+.++|.++++++.. ++..+|- .++..+
T Consensus 260 ~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (987)
T PRK09782 260 RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATL 339 (987)
T ss_pred CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 9999999999888642 0000000 000111
Q ss_pred -----------------------------------------------HhCC-chHHHHHHHHhHHC-C-CCC--------
Q 007288 291 -----------------------------------------------EKSG-SSECLNMFSKMKSE-R-FSP-------- 312 (609)
Q Consensus 291 -----------------------------------------------~~~~-~~~a~~~~~~m~~~-~-~~p-------- 312 (609)
.+.| .++|.++|+..... + -.+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 1223 33344443333220 0 001
Q ss_pred --------------------------------------------------------CHHhHHHHHHHHHhhccHHHHHHH
Q 007288 313 --------------------------------------------------------NCFTFTSIIAACATLAALSCGQQV 336 (609)
Q Consensus 313 --------------------------------------------------------~~~t~~~ll~~~~~~~~~~~a~~~ 336 (609)
+...|..+..++.. ++.++|...
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 11112222222222 444556665
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
+....... |+......+...+...|++++|...|+.+.. ++...+..+...+.+.|+.++|...+++..+.. |+
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~ 574 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LG 574 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc
Confidence 55554432 3433333444555678888888888887653 344456666777888899999999998888753 43
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHH
Q 007288 415 R-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGA 491 (609)
Q Consensus 415 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 491 (609)
. ..+..+...+...|++++|...+++..+.. |+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..+
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 333344445556699999999999987644 56788889999999999999999999888 55665 4556666678
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+..
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998744
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=179.62 Aligned_cols=488 Identities=13% Similarity=0.058 Sum_probs=333.9
Q ss_pred hhHHhHHHHHHHccCChhHHHHhhccCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC---------------
Q 007288 46 SILATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV--------------- 108 (609)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------- 108 (609)
..++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+...
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~ 154 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVG 154 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhc
Confidence 67778999999999999999999988764 3323333333222 677777777777765321
Q ss_pred -----------------------CCCcchHHHH-HHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh-cCCC
Q 007288 109 -----------------------NPNAFTLSSV-LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYAT-CCIS 163 (609)
Q Consensus 109 -----------------------~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~ 163 (609)
.|+..+.... .+.|...+++++|..++..+.+.++. +......|-.+|.. .+ +
T Consensus 155 ~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~-~ 232 (987)
T PRK09782 155 QNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL-D 232 (987)
T ss_pred cchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC-H
Confidence 1122222333 55667777888888888888877644 34445555556666 35 5
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCC-CCHhhHHHH----------------------
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE-MNPYSFSIA---------------------- 220 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l---------------------- 220 (609)
+.+..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |+..++..+
T Consensus 233 -~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 233 -DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred -HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 66777766544457777888888888888888888888776543211 221111111
Q ss_pred --------HHHHHccC---------------------------------------------------------------C
Q 007288 221 --------VRACASTG---------------------------------------------------------------W 229 (609)
Q Consensus 221 --------l~~~~~~g---------------------------------------------------------------~ 229 (609)
+..+.+.+ +
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 11122222 2
Q ss_pred chhHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCC---HHHHHHHHH-------------------------hcCC--
Q 007288 230 VSFGKLIHAAVIKH-G-FGSNLPVMNSILDMYCRFDC---LSDANQYFD-------------------------EMTE-- 277 (609)
Q Consensus 230 ~~~a~~~~~~~~~~-g-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~-------------------------~~~~-- 277 (609)
.++|.++++..... + -..+......++..|.+.+. ..++..+-. ....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 33333333332220 0 11122333455555555544 222222210 1100
Q ss_pred -C--ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHH
Q 007288 278 -K--DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALAN 353 (609)
Q Consensus 278 -~--~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (609)
+ +...|..+..++.. + ..+|+..+.+.... .|+......+...+...|+++.|...++.+... +|+...+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~ 546 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL 546 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence 1 34456666666665 5 77899988777664 466655444555567899999999999987654 34445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM---MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 430 (609)
.+..++.+.|+.++|...|+...+.+....+.. .......|++++|...+++..+ ..|+...+..+...+.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCC
Confidence 778889999999999999998886443333333 3334455999999999999998 46788899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+++|+..+++..... +.+...++.+..++...|++++|++.+++. ...| +...+..+..++...|++++|+..++++
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999997765 336778888999999999999999999987 4556 4667888889999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++.|++..+....++...+..+++.|.+-+++--.-++
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999998887765444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-19 Score=170.94 Aligned_cols=463 Identities=11% Similarity=0.104 Sum_probs=351.5
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhc
Q 007288 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHS 192 (609)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 192 (609)
..|..-..+.|++++|++.....-..+.. +....-.+-..+.... +.+.....-....+ .-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~-r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGS-RLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhccc-chhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 34445566788999988766555443321 1111111222333333 44443332222211 2457899999999999
Q ss_pred CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 007288 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNL-PVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 193 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
|++++|+.+|+.|++...+ ....|..+..++...|+.+.|.+.|...++. .|+. -+.+.+...+...|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999986322 5678999999999999999999999998886 3443 3445566667778999999998
Q ss_pred HHhcCC--CC-hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 007288 272 FDEMTE--KD-LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTFTSIIAACATLAALSCGQQVHAGIVRRGLD 346 (609)
Q Consensus 272 ~~~~~~--~~-~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (609)
+.+..+ |. .+.|+.|...+-..| ...|+..|++... +.|+ ...|..+.+.+...+.++.|...+.+..... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 887765 32 367999999999999 9999999999886 4554 3578889999999999999999998877643 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD--RD-LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVL 422 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 422 (609)
.....+..+...|...|.++-|+..|++..+ |+ ...|+.|..++-..|++.+|+..|.+.... .|+. .+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 4456677788889999999999999999885 43 468999999999999999999999999884 5554 5888999
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 499 (609)
..+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++. .++|+ ...++.+...|...|+.+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998866 3444 557888999999999999999999988 78886 468888899999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEE-EecCCCCCcHHHH
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGF-IANDKMGSHTQYV 578 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 578 (609)
.|.+.+.+++.++|.-..++..|+.+|-.+|+..+|+.-+++..+..+..+.+.+ |.+|.+ +..+ --...+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c-----Nllh~lq~vcd--w~D~d~~ 512 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC-----NLLHCLQIVCD--WTDYDKR 512 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh-----HHHHHHHHHhc--ccchHHH
Confidence 9999999999999988999999999999999999999999999885543222221 111111 1111 1234455
Q ss_pred HHHHHHHHHHHHHcCcccC
Q 007288 579 YGVLEMLIRHMNETAYEPD 597 (609)
Q Consensus 579 ~~~~~~l~~~m~~~g~~pd 597 (609)
++++.++...-.++..-|.
T Consensus 513 ~~kl~sivrdql~~~rlps 531 (966)
T KOG4626|consen 513 MKKLVSIVRDQLEKNRLPS 531 (966)
T ss_pred HHHHHHHHHHHHhhhcCCc
Confidence 6667777776665554444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-17 Score=176.11 Aligned_cols=247 Identities=10% Similarity=0.026 Sum_probs=201.4
Q ss_pred chHHHHHHHHhHHCC-CCC-CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSER-FSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
+++|.+.|++..+.+ ..| +...+..+...+...|+++.|...++...+.. +.....|..+..++...|++++|...|
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788999999888764 234 34566777777788999999999999988764 334567788888999999999999999
Q ss_pred HhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 373 SEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 373 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
+.+.+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...+.+.|++++|+..|++..+.. +.
T Consensus 389 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~ 465 (615)
T TIGR00990 389 DKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PE 465 (615)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 98764 35678888999999999999999999999985 44 45677888889999999999999999987643 34
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-h-------hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-S-------VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
+...++.+...+...|++++|++.|++. ...|+. . .++..+..+...|++++|...++++++++|++...+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 5788899999999999999999999886 444431 1 112222334457999999999999999999888899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..++.++.+.|++++|+.+|++..+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-19 Score=178.70 Aligned_cols=298 Identities=11% Similarity=0.090 Sum_probs=200.9
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHH
Q 007288 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMF 302 (609)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~ 302 (609)
.+...|++++|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+...
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------------ 98 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR------------------------ 98 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC------------------------
Confidence 3455666777777777766653 334456666666666666666666666655431
Q ss_pred HHhHHCCCCCC---HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 007288 303 SKMKSERFSPN---CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR- 378 (609)
Q Consensus 303 ~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 378 (609)
...++ ...+..+...+...|+++.|..+|..+.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.
T Consensus 99 ------~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 99 ------PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 11110 1233444444445555555555555544431 233444555555555555555555555555421
Q ss_pred -C------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh
Q 007288 379 -D------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451 (609)
Q Consensus 379 -~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 1 1134556677788889999999998888743 2234577778888899999999999999986654333356
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh--
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA-- 528 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 528 (609)
+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++++++..|++. .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 6788889999999999999999887 4567777778888999999999999999999999999654 56655555553
Q ss_pred -cCChHHHHHHHHHHHhCCCcccCcee
Q 007288 529 -EGKWEEFAKFRKIMRGMGSKKEVGMS 554 (609)
Q Consensus 529 -~g~~~~A~~~~~~m~~~~~~~~~~~~ 554 (609)
.|+.+++..++++|.++++.++|...
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56899999999999999999888753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-16 Score=168.51 Aligned_cols=393 Identities=9% Similarity=-0.043 Sum_probs=198.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCC---CCChhhHHHHHHHHHhc
Q 007288 116 SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYAHS 192 (609)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 192 (609)
.-.+......|+.++|.+++....... +.+...+..+...+...| ++++|..+|+... ..+...+..+...+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 333444445555555555555554421 122333555555555555 5555555555532 12445556666677777
Q ss_pred CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 193 GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYF 272 (609)
Q Consensus 193 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 272 (609)
|++++|+..+++..... +.+.. +..+..++...|+.++|...++++.+.. +.+..++..+..++...|..++|+..+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77777777777776652 22344 6666667777777777777777777764 445555566777777777778788777
Q ss_pred HhcCCCChh--------HHHHHHHHHHh-----CC-c---hHHHHHHHHhHHC-CCCCCHH-hHH----HHHHHHHhhcc
Q 007288 273 DEMTEKDLI--------TWNTIIAGYEK-----SG-S---SECLNMFSKMKSE-RFSPNCF-TFT----SIIAACATLAA 329 (609)
Q Consensus 273 ~~~~~~~~~--------~~~~li~~~~~-----~~-~---~~a~~~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~ 329 (609)
+.... ++. ....++..... .+ . ++|+..++.+... ...|+.. .+. ..+.++...|+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 76665 211 11111111111 11 1 4566666666543 1122211 111 11223344566
Q ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCHHHHHH
Q 007288 330 LSCGQQVHAGIVRRGLD-GNLALANALIDMYAKCGNISDSQKIFSEMSDRD-------LVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~ 401 (609)
.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+.+.+ ......+..++...|++++|..
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 66666666666555421 111 11223455666666666666666554211 1223334445556666666666
Q ss_pred HHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH
Q 007288 402 LFDEMVKSG-----------VRPDR---IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467 (609)
Q Consensus 402 ~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
+++.+.... -.|+. ..+..+...+...|++++|+++++++.... +.+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 666655431 01121 122334444445555555555555553322 223444445555555555555
Q ss_pred HHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 468 EAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 468 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
+|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 555555544 33343 22333333444555555555555555555555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=168.21 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=209.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHh
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN---LPVMNSILDMYCR 261 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~ 261 (609)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999998742 3556788899999999999999999999887542221 2456777777888
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHH
Q 007288 262 FDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 337 (609)
.|++++|..+|+++.+ .+..+++.++..+.+.| +++|.+.++.+...+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 8888888877777654 23344445555555555 5555555555444321111000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++++++.+.+....
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 011234566667777888888888877653 2 345677788888999999999999999887532222
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACK 493 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 493 (609)
..++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 4567888899999999999999999987653 56667788899999999999999999876 66789989988887765
Q ss_pred h---CCChHHHHHHHHHHhc
Q 007288 494 E---HRLPNLGKLAALRVLD 510 (609)
Q Consensus 494 ~---~~~~~~a~~~~~~~~~ 510 (609)
. .|+.+++...++++++
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 4 4578888888887765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-17 Score=169.68 Aligned_cols=329 Identities=8% Similarity=-0.002 Sum_probs=248.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 259 (609)
.....++..+.+.|++++|+.+++........ +...+..++.++...|+++.|...++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34555677778888999999888888776433 34445555566677889999999988888874 55677788888888
Q ss_pred HhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHH
Q 007288 260 CRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQ 335 (609)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 335 (609)
.+.|++++|...+++..+ | +...+..+...+...| .++|...++.+......+ ...+.. +..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHH
Confidence 888999999888888764 3 4567788888888888 888888888776643222 222222 334677889999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 007288 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKE----AIELFDEMVK 408 (609)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 408 (609)
.++.+.+....++......+..++.+.|++++|...|+...+ .+...+..+...+...|++++ |...|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888887765334444555567788889999999999988774 245677778888889999885 7889998887
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHH
Q 007288 409 SGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWG 486 (609)
Q Consensus 409 ~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 486 (609)
. .|+ ...+..+...+...|++++|...+++..+... .+...+..+..++.+.|++++|++.++++ ...|+...+.
T Consensus 279 l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 F--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 4 444 45888888889999999999999999876542 24566777888999999999999999887 4556654433
Q ss_pred -HHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 487 -PLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 487 -~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
.+..++...|+.++|...++++++..|++
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 34567889999999999999999988854
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-16 Score=170.48 Aligned_cols=395 Identities=7% Similarity=-0.004 Sum_probs=298.9
Q ss_pred CcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHH
Q 007288 146 SIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVR 222 (609)
Q Consensus 146 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 222 (609)
+.....-.+.+....| +.++|++++..... .+...+..+...+...|++++|.++|++..... +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4445556677777888 99999999988764 345568999999999999999999999988762 234566777888
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHH
Q 007288 223 ACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSEC 298 (609)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a 298 (609)
.+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+ .++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8899999999999999999873 55666 88899999999999999999999865 3 4556667777888888 8889
Q ss_pred HHHHHHhHHCCCCCCHH------hHHHHHHHH-----HhhccH---HHHHHHHHHHHHh-CCCCchh-HH----HHHHHH
Q 007288 299 LNMFSKMKSERFSPNCF------TFTSIIAAC-----ATLAAL---SCGQQVHAGIVRR-GLDGNLA-LA----NALIDM 358 (609)
Q Consensus 299 ~~~~~~m~~~~~~p~~~------t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~ 358 (609)
+..++.... .|+.. ....++... ...+++ +.|...++.+.+. ...|+.. .+ ...+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998886653 33320 111122222 112233 7788888888754 2223221 11 111334
Q ss_pred HHhcCCHHHHHHHHHhcCCCC--cc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCH
Q 007288 359 YAKCGNISDSQKIFSEMSDRD--LV--TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP---DRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~ 431 (609)
+...|++++|...|+.+.+.+ .. .-..+..+|...|++++|+.+|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 567799999999999998532 11 22235678999999999999999988743111 134566677788999999
Q ss_pred HHHHHHHHHhhhcCC-----------CCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC
Q 007288 432 DEGLKYFKSMNDYNV-----------NPN---KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH 495 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 495 (609)
++|.+.++.+.+... .|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999965421 123 234566788899999999999999997 3345 456777888999999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 496 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
|++++|+..++++++++|++...+..++..+...|++++|..+++++.+..+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-16 Score=163.19 Aligned_cols=271 Identities=11% Similarity=0.040 Sum_probs=189.7
Q ss_pred cCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhHHHHHHHHHhhccHHHH
Q 007288 262 FDCLSDANQYFDEMTEK------DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTFTSIIAACATLAALSCG 333 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a 333 (609)
.+++++|.+.|+...+. ....|+.+...+...| +++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 35566666666655431 2344566666666666 77777777776653 343 44666777777788888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007288 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (609)
...++.+.+.. +.+..++..+..++...|++++|...|+...+ | +...+..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88888877664 44567778888888889999999999988864 3 4566777888888999999999999998874
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-
Q 007288 411 VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE------IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE- 482 (609)
Q Consensus 411 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~- 482 (609)
.+-+...+..+...+...|++++|+..|+...+.....+.. .++.....+...|++++|.+++++. ...|+.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 23345688888889999999999999999986644221111 1222223344569999999999886 555644
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..+..+...+.+.|++++|...++++.++.+..... .....+.+|.++..+.++
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999887743221 122244555555444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-15 Score=156.51 Aligned_cols=438 Identities=8% Similarity=-0.004 Sum_probs=290.2
Q ss_pred HHHccCChhHHHHhhccCCC--CCcc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-hHHH--HHHHhhCCCCh
Q 007288 55 SYFDEGLIEEARTLFDEMPE--RDVV-SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF-TLSS--VLKACKGMKSL 128 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~--ll~~~~~~~~~ 128 (609)
...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. .+.. +...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 45678888888888887764 3321 12377777777888888888888876 23222 2222 24467777888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHh--cCChhhHHHHHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH--SGNGYGGLGVFKEML 206 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 206 (609)
++|.++++++.+..+. +...+..++..+...+ +.++|++.++.+...+......+..++.. .++..+|++.++++.
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888888877654 3455556667777777 77777777777765433322223333333 444444777777777
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 007288 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286 (609)
Q Consensus 207 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 286 (609)
+.. +-+...+..++.++.+.|-...|.++... .|+..+-...... +.+.|.+..+....++.. -
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~-~--- 260 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS-E--- 260 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-c---
Confidence 652 22444556666666666666666655443 2222211111110 111222222111111000 0
Q ss_pred HHHHHhCC-chHHHHHHHHhHHC-CCCCCH-----HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007288 287 IAGYEKSG-SSECLNMFSKMKSE-RFSPNC-----FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359 (609)
Q Consensus 287 i~~~~~~~-~~~a~~~~~~m~~~-~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (609)
- -+-. .+.|+.-++.+... +-.|.. ....-.+-++...++...++..++.+...+.+....+-.++.++|
T Consensus 261 ~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0 0001 35566666665542 222322 122345667788999999999999999988777777889999999
Q ss_pred HhcCCHHHHHHHHHhcCCC---------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH--H-
Q 007288 360 AKCGNISDSQKIFSEMSDR---------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-----------RPDR--I- 416 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~- 416 (609)
...++.++|+.+|+.+..+ +......|.-+|...+++++|..+++++.+... .||. .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 9999999999999998542 222346788999999999999999999987311 2332 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 494 (609)
.+..++..+...|++.+|++.++++.... +-|......+.+.+...|.+.+|++.++.. ...|+ ..+......++..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 44556677889999999999999996644 558889999999999999999999999776 45665 4556667788889
Q ss_pred CCChHHHHHHHHHHhccCCCCcch
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.+++++|..+...+.+..|++..+
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999999977643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-16 Score=162.27 Aligned_cols=327 Identities=10% Similarity=-0.003 Sum_probs=266.3
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHH
Q 007288 215 YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYE 291 (609)
Q Consensus 215 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 291 (609)
.-...++..+.+.|+++.|..+++..+... +-+...+..++.+....|++++|...|+++.+ | +...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566778889999999999999999875 44455666667778889999999999999865 3 5567888889999
Q ss_pred hCC-chHHHHHHHHhHHCCCCC-CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007288 292 KSG-SSECLNMFSKMKSERFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369 (609)
Q Consensus 292 ~~~-~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (609)
..| .++|...+++.... .| +...+..+...+...|+.+.|...+..+......+ ...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 999 99999999999874 34 45677788889999999999999999887765333 3333333 3478899999999
Q ss_pred HHHHhcCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHh
Q 007288 370 KIFSEMSDR----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDE----GLKYFKSM 441 (609)
Q Consensus 370 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~ 441 (609)
..++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987653 23344555678889999999999999999853 3345678888999999999986 89999999
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
.+.. +.+...+..+...+...|++++|+..+++. ...|+ ...+..+..++.+.|++++|...++++.+..|++...+
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 7754 336778899999999999999999999988 44565 45666777899999999999999999999999877767
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..++.++...|++++|...|++..+..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77889999999999999999999876543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-14 Score=154.28 Aligned_cols=429 Identities=11% Similarity=0.029 Sum_probs=267.8
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCc--chHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcc-hhhHH--HHHHHhcC
Q 007288 87 YTSFNCHNQAWTVFVEMVRNEVNPNA--FTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIY-VENSL--MDVYATCC 161 (609)
Q Consensus 87 ~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--l~~~~~~g 161 (609)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|..++++.. .|+.. .+..+ ...|...|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 34666777777777776653 3332 122 55555666666666666666665 22221 22222 33555555
Q ss_pred CCHHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHH
Q 007288 162 ISMDNARLVFNDMKWK---NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238 (609)
Q Consensus 162 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 238 (609)
++++|+++|+.+.+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++
T Consensus 117 -dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 -RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 666666666665432 3444555556666666666666666666554 3344444333333333444444666666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhH
Q 007288 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTF 317 (609)
Q Consensus 239 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 317 (609)
++.+.. +.+...+..+..++.+.|-...|.++..+-+.- +...+.-|- .+.|.+ ++..+..++.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~-------~~~~a~----~vr~a~~~~~--- 258 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE-------RDAAAE----QVRMAVLPTR--- 258 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH-------HHHHHH----HHhhcccccc---
Confidence 666653 445555566666666666666666655554321 000000000 011111 1111111110
Q ss_pred HHHHHHHHhhcc---HHHHHHHHHHHHHh-CCCCc-hh----HHHHHHHHHHhcCCHHHHHHHHHhcCCC----CcchHH
Q 007288 318 TSIIAACATLAA---LSCGQQVHAGIVRR-GLDGN-LA----LANALIDMYAKCGNISDSQKIFSEMSDR----DLVTWT 384 (609)
Q Consensus 318 ~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 384 (609)
....+ .+.|..-++.+... +-.|. .. ...-.+-++...|+..++++.|+.+..+ ...+-.
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 01112 33344444444431 11122 11 2223455678899999999999999953 234556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC-----------CC
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSG-----VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV-----------NP 448 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 448 (609)
.+.++|...+++++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 78899999999999999999997642 122334467889999999999999999999966221 12
Q ss_pred C---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 449 N---KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 449 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
+ ...+..++..+.-.|+..+|++.++++ ...| |...+..+...+...|.+..|+..++.+..+.|++..+....+
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 2 223445678889999999999999998 4445 6677778889999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 007288 524 NIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++...|+|.+|..+.+.+....+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCC
Confidence 999999999999999988876544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-15 Score=138.50 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=185.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 155 (609)
+..+|..||.++|+-...++|.++|++......+.+..+||.+|.+-+-... ++++.+|......||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4456777777777777777777777777776667777777777766433222 567777777777777777777777
Q ss_pred HHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchh-HH
Q 007288 156 VYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF-GK 234 (609)
Q Consensus 156 ~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~ 234 (609)
..++.| +++.|.+ .|++++.+|++.|+.|...+|..+|..+++.++..+ +.
T Consensus 282 c~akfg-~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 282 CAAKFG-KFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHhc-chHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 777776 6555543 467888999999999999999999999988887754 44
Q ss_pred HHHHHHHHh----CCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHhCC-
Q 007288 235 LIHAAVIKH----GFG----SNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-----------DLITWNTIIAGYEKSG- 294 (609)
Q Consensus 235 ~~~~~~~~~----g~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~- 294 (609)
.++.++... .+. .|...+...+..|.+..+.+-|..+-..+... ...-|..+....++..
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 222 24556777788888888888888876665431 1234556667777777
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (609)
.+.-+..|+.|.-.-+-|+..+...++++....++++-..+++.+++..|.........-++..+++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 8999999999998888899999999999999999999999999999988755544444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-15 Score=149.48 Aligned_cols=487 Identities=13% Similarity=0.071 Sum_probs=304.7
Q ss_pred HHHHccCChhHHHHhhccCCCCCcccHHHHHHHH---Hc---CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC
Q 007288 54 KSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGY---TS---FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127 (609)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (609)
.++.+.|+.+.|+..|++..+.|+..-++++... .. ...+..++.++...-... .-|+...+.|.+.+.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 5566777777777777776664443333333211 11 123344555554444322 1255566666677777777
Q ss_pred hHHHHHHHHHHHHhCCC--CCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC--C--hhhHHHHHHHHHhcCChhhHHHH
Q 007288 128 LSNAALVHGMAIKEGLE--GSIYVENSLMDVYATCCISMDNARLVFNDMKWK--N--DVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 128 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
++.+..+...+...... .-...|-.+.++|...| +++.|...|...... + +..+--|...+.+.|+++.+...
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 77777777776654321 11233555666777777 777777777655432 1 33455566777777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccC----CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc--
Q 007288 202 FKEMLLEGVEMNPYSFSIAVRACASTG----WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM-- 275 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 275 (609)
|+..... .+-+..|...|...|+..+ ..+.|..++....+.- +.|...|-.+...|-...-+ .++.+|...
T Consensus 365 fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d 441 (1018)
T KOG2002|consen 365 FEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALD 441 (1018)
T ss_pred HHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHH
Confidence 7777664 2334455656655555553 3455555555555443 44555666555555443322 223333322
Q ss_pred ------CCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHC---CCCCCH------HhHHHHHHHHHhhccHHHHHHHHHH
Q 007288 276 ------TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSE---RFSPNC------FTFTSIIAACATLAALSCGQQVHAG 339 (609)
Q Consensus 276 ------~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~ 339 (609)
....+...|.+.......| +.+|...|...... ...+|. .+-..+....-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1235556677777777777 77777777766543 122222 1222344444556677777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 007288 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDR 415 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 415 (609)
+.+.. +.-+..|-.+..+.-..+...+|...+..+.. .++..+.-+...+.....+..|.+-|....+.- ..+|.
T Consensus 522 Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 522 ILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 77653 11122222222222223566677777777663 455666667777887778878877666665532 23576
Q ss_pred HHHHHHHHHHhc------------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC
Q 007288 416 IVFMAVLTACSH------------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPD 481 (609)
Q Consensus 416 ~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~ 481 (609)
.+...|...|.. .+..++|+++|.+..+.. +-|...-|.+.-.++..|++.+|..+|.+. ...-.
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~ 679 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF 679 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC
Confidence 766666665543 245678999999887755 347888888899999999999999999988 22335
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhcc-CC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDL-KP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+|-.+..+|..+|++..|+++|+...+. .+ ++......|+.++.+.|++.+|.+.+...+...+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 678899999999999999999999998763 33 6678888999999999999999999888876544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-14 Score=132.27 Aligned_cols=426 Identities=12% Similarity=0.081 Sum_probs=275.7
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhh--CCCChH-HHHHHHHHHHHhCCCCCcchhhHHH
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK--GMKSLS-NAALVHGMAIKEGLEGSIYVENSLM 154 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll 154 (609)
.+=|.++. +..+|..+.+.-+|+.|...|+..+...-..|++..+ ...++. .-.+.|-.|.+.|-. +..+|.
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sWK--- 191 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSWK--- 191 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccccc---
Confidence 44555555 4567899999999999999998888776666665532 222222 223445556555543 444442
Q ss_pred HHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHH
Q 007288 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGK 234 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 234 (609)
+-+.|.-+|+ ...++..+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. .+
T Consensus 192 --------~G~vAdL~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K 258 (625)
T KOG4422|consen 192 --------SGAVADLLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK 258 (625)
T ss_pred --------cccHHHHHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence 3344444444 4446677899999999999999999999999999888999999999998765433 28
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCH
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNC 314 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~ 314 (609)
++..+|.+..+.||..|+|+++.+..+.|+++.|.+. |++++.+|++-|+.|..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a--------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA--------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH--------------------------HHHHHHHHHHhCCCcch
Confidence 8999999999999999999999999999999888764 34556677777777777
Q ss_pred HhHHHHHHHHHhhccHHH-HHHHHHHHHH----hCC----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------
Q 007288 315 FTFTSIIAACATLAALSC-GQQVHAGIVR----RGL----DGNLALANALIDMYAKCGNISDSQKIFSEMSD-------- 377 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 377 (609)
.+|..+|..+++.++..+ +..+..++.. +.+ +.|...+..-+..|.+..+.+-|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 777777777766666543 3333333332 111 22344555566666666676666666555442
Q ss_pred CC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 378 RD---LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 378 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
++ ..-|..+....++....+.-...|+.|.-.-+-|+..+...++++....+.++-.-++|..++..|...+.....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 11 123555666667777777777777777766666777777777777777777777777777777766555555444
Q ss_pred HHHHHHhhcC-CH--------HH-----HHHHHHhC--------CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc-
Q 007288 455 CVVDLLGRAG-RV--------KE-----AYELIKSM--------PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL- 511 (609)
Q Consensus 455 ~l~~~~~~~g-~~--------~~-----A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 511 (609)
-+...+++.+ ++ .. |..+++.. ...-.....+...-.+.+.|..++|.+++....+.
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 4555555444 11 10 11111111 11123334445555567788888888887777542
Q ss_pred --CCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 512 --KPNMM--GTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 512 --~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
-|..+ .+..-+.+.-.+....-+|...++-|...+.
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23221 2223455555566777788888888766544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-14 Score=144.02 Aligned_cols=477 Identities=10% Similarity=0.062 Sum_probs=233.0
Q ss_pred cCChhHHHHhhccCC--C----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHH---hhCCCCh
Q 007288 59 EGLIEEARTLFDEMP--E----RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP-NAFTLSSVLKA---CKGMKSL 128 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~--~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~---~~~~~~~ 128 (609)
.|++..|+.+|.... . +|+.. .+--.+.+.|+.+.|+..|.+..+. .| ++.++..|-.. +-....+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHH
Confidence 456666666666532 1 22211 1112334556666666666666553 22 12222221111 1111223
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCC------hhhHHHHHHHHHhcCChhhHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKN------DVSWTTLITGYAHSGNGYGGLGVF 202 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~ 202 (609)
..+...+........ -++.+.+.|...|...| ++..+..+...+...+ ..+|-.+.++|-..|++++|...|
T Consensus 253 ~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENN-ENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 333334333333322 24555555666665555 6666655555443321 223555566666666666666666
Q ss_pred HHHHHCCCCCCHh--hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHhcC
Q 007288 203 KEMLLEGVEMNPY--SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD----CLSDANQYFDEMT 276 (609)
Q Consensus 203 ~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~ 276 (609)
.+.... .+|.. .+..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++....
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 555443 22322 23344555566666666666666665552 444455555555555543 3344555554444
Q ss_pred CC---ChhHHHHHHHHHHhCCchHHHHHHHHh----HHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh---CCC
Q 007288 277 EK---DLITWNTIIAGYEKSGSSECLNMFSKM----KSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR---GLD 346 (609)
Q Consensus 277 ~~---~~~~~~~li~~~~~~~~~~a~~~~~~m----~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~ 346 (609)
++ |...|-.+...+-......++.+|... ...+-.+.....|.+.......|++..|...|...... ...
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 32 344455555555444422224444332 23333355555566665666666666666666555443 111
Q ss_pred Cch------hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 347 GNL------ALANALIDMYAKCGNISDSQKIFSEMSDRDLV---TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 347 ~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
++. .+--.+..++-..++.+.|.+.|..+.+..+. .|-.+.......++..+|...+++..... .-+...
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHH
Confidence 221 11222444444555666666666666542221 22222212223355556666666655421 223333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhh------------cCCHHHHHHHHHhC-CCCC-CH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGR------------AGRVKEAYELIKSM-PFKP-DE 482 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~p-~~ 482 (609)
+..+...+.+...+..|..-|... .+....+|..+.-+|.+.|.. .+..++|+++|.+. ...| |.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 333444455555555555544444 222222444444444443321 23455666666655 3333 44
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..-+-+.-.++..|++..|..+|.++.+..-+...+|..++++|..+|+|-.|+++|+...++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666777777777777776655555667777777777777777777777666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-15 Score=136.86 Aligned_cols=468 Identities=13% Similarity=0.076 Sum_probs=317.2
Q ss_pred ccCChhHHHHhhccCCC--------------C---Cc-ccHHH---HHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHH
Q 007288 58 DEGLIEEARTLFDEMPE--------------R---DV-VSWTV---MIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116 (609)
Q Consensus 58 ~~g~~~~A~~~~~~~~~--------------~---~~-~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 116 (609)
.+|++.+|++--....+ | |. .+|.. +..-|..+....+|+..|+-+.++..-|+.....
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 46788877765544321 1 11 23444 3445666677889999999998887777776543
Q ss_pred H-HHHHhhCCCChHHHHHHHHHHHHhCCCCCcc----hhhHHHHHHHhcCCCHHHHHHHHccCCC--CChhh-HHHHHHH
Q 007288 117 S-VLKACKGMKSLSNAALVHGMAIKEGLEGSIY----VENSLMDVYATCCISMDNARLVFNDMKW--KNDVS-WTTLITG 188 (609)
Q Consensus 117 ~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~~A~~~~~~~~~--~~~~~-~~~li~~ 188 (609)
. +-+.+.+.+.+..|.++++..+..-+..+.. +.+.+--.+.+.| .+++|+..|+...+ |+..+ +|.+| +
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g-qy~dainsfdh~m~~~pn~~a~~nl~i-~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG-QYDDAINSFDHCMEEAPNFIAALNLII-C 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc-cchhhHhhHHHHHHhCccHHhhhhhhh-h
Confidence 2 3355778889999999999888765443333 3444445577888 99999999998754 55544 55444 4
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCHh------------hHHHHHH-----HHHccC--CchhHHHHHHHHHHhCCCCCh
Q 007288 189 YAHSGNGYGGLGVFKEMLLEGVEMNPY------------SFSIAVR-----ACASTG--WVSFGKLIHAAVIKHGFGSNL 249 (609)
Q Consensus 189 ~~~~g~~~~a~~~~~~m~~~g~~p~~~------------t~~~ll~-----~~~~~g--~~~~a~~~~~~~~~~g~~~~~ 249 (609)
+..-|+-++..+.|.+|+.-...||.. ..+..+. -.-+.. +.+++.-.-..++.--+.|+-
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 455789999999999998754333332 2222221 111111 111111111111111122221
Q ss_pred h-------------HH--------HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH-----HHHHHHHhCC--chHHHHH
Q 007288 250 P-------------VM--------NSILDMYCRFDCLSDANQYFDEMTEKDLITWN-----TIIAGYEKSG--SSECLNM 301 (609)
Q Consensus 250 ~-------------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~~--~~~a~~~ 301 (609)
. .+ -.-..-|.+.|+++.|.++++-..+.|..+-+ .-.--|.+.| +..|.+.
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 0 00 01123477899999999999888765543322 2223344445 5666555
Q ss_pred HHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CC
Q 007288 302 FSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DR 378 (609)
Q Consensus 302 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 378 (609)
-+...... .-+....+.--+.....|++++|...+++.....-.-....|| +.-.+-..|++++|+..|-.+. ..
T Consensus 479 ad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 479 ADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 55444321 1122222222233345789999999999998765444444444 3334677899999999998776 46
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
++.....+...|-...+...|++++.+.... ++.|......|...|-+.|+-..|.+++-.--+ -++-+..+..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHH
Confidence 7777777888898999999999999887763 455667889999999999999999988766533 24567888888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.|....-+++|+..|++. -++|+..-|..++ +++++.|++++|..+|+...+..|.+......|++.+...|.
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 899999999999999998 5789999999998 556789999999999999999999999999999999998885
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-12 Score=126.96 Aligned_cols=486 Identities=11% Similarity=0.114 Sum_probs=281.7
Q ss_pred HHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHH
Q 007288 55 SYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNA 131 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (609)
.+...|+.++|.+++.++.+ .+..+|.+|...|-..|+.+++...+-..--... -|...|..+.......|.+.+|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHH
Confidence 33445999999999999875 3567788888888888888888776655443322 2446667666667777777777
Q ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC----------------------------------
Q 007288 132 ALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---------------------------------- 177 (609)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~---------------------------------- 177 (609)
.-.+.+.++..+. +....-.-...|-+.| +...|...|.++...
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777766543 3333334455556666 666665555544321
Q ss_pred ----------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHh----------------------hHH----HHH
Q 007288 178 ----------NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY----------------------SFS----IAV 221 (609)
Q Consensus 178 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------------t~~----~ll 221 (609)
+...+|.++..+.+...++.|......+......+|.. .|. -++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 22334455555555555555555555554411111111 111 111
Q ss_pred HHHHccCCchhHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCC-
Q 007288 222 RACASTGWVSFGKLIHAAVIKHGF--GSNLPVMNSILDMYCRFDCLSDANQYFDEMTE----KDLITWNTIIAGYEKSG- 294 (609)
Q Consensus 222 ~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~- 294 (609)
-++......+....+......... .-++..|.-+..+|.+.|++.+|+.+|..+.. .+...|-.+..+|...+
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 122333344444444444455442 23455677777888888888888888888765 25567888888888888
Q ss_pred chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCCchhHHHHHHHHHHhcCCH
Q 007288 295 SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLAALSCGQQVHAGIVRRG--------LDGNLALANALIDMYAKCGNI 365 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 365 (609)
.++|.+.|.+.+.. .|+. ..-..+-..+.+.|+.++|.+.+..+..-+ +.|+....-...+.+...|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 88888888887764 3433 334455566677888888888887765321 234444444455566666666
Q ss_pred HHHHHHHHhcCC----------------------------------------C------------Cc-------------
Q 007288 366 SDSQKIFSEMSD----------------------------------------R------------DL------------- 380 (609)
Q Consensus 366 ~~A~~~~~~~~~----------------------------------------~------------~~------------- 380 (609)
++=..+-..|.. + +.
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 553322211110 0 00
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhc-CCCCC-
Q 007288 381 ----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGV--RPDR---IVFMAVLTACSHAGLVDEGLKYFKSMNDY-NVNPN- 449 (609)
Q Consensus 381 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~- 449 (609)
..+.-++.++++.+++++|+.+...+..... .++. ..-...+.+++..+++..|...++.|... +...+
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 0133456677888888888888887776421 2222 12233455667788888888888887432 21111
Q ss_pred --hhHHHHHHHHHh-----------------------------------hcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 007288 450 --KEIYGCVVDLLG-----------------------------------RAGRVKEAYELIKSM-PFKPDESVWGPLLGA 491 (609)
Q Consensus 450 --~~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 491 (609)
...|+...+.+. .++.+.-|+..+-+. ...||.+..+.++..
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 223332222222 223344555444333 334554444444322
Q ss_pred -H----------HhCCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 492 -C----------KEHRLPNLGKLAALRVLDLKPN--MMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 492 -~----------~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+ .++-..-.+...+.+..++.-. ....+..++.+|-..|-..-|..++++...-
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 1 1112233455555555554432 4568889999999999999999999999874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-10 Score=113.06 Aligned_cols=493 Identities=10% Similarity=0.026 Sum_probs=374.1
Q ss_pred HHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHH
Q 007288 55 SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALV 134 (609)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 134 (609)
+.......++|+-++.+..+--.. -.-|.-+|++..-++.|..+++..++. ++-+...|.+....=-..|..+.+.++
T Consensus 385 aAVelE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 334467777788888776641111 123344556666788888888888875 666777887777766777888888777
Q ss_pred HHHHH----HhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhhHHHHHHH
Q 007288 135 HGMAI----KEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW------KNDVSWTTLITGYAHSGNGYGGLGVFKE 204 (609)
Q Consensus 135 ~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (609)
.++-+ ..|+..+...|-.=...+-..| ..--+..+...... .-..+|+.-...|.+.+.++-|..+|..
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag-sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAG-SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcC-ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 76543 3477777777766666666666 66666555554431 1345788888899999999999999988
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChh
Q 007288 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLI 281 (609)
Q Consensus 205 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 281 (609)
..+. .+-+...|..+...--..|..+....+++.++..- +-....|-....-+-..|++..|..++...-+ .+..
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 8775 23345556666666677888999999999988873 55666777777788888999999998887754 3556
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA 360 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (609)
.|-+-+.....+. .+.|..+|.+.... .|+...|.--++..--.++.++|.+++++..+. .+.-...|-.+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 7777777778888 99999999888764 567777766666666788999999999888775 3445667888899999
Q ss_pred hcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
..++++.|...|..-.+ | .+..|-.|...--+.|++-+|..++++..-++ +-|...|...|+.=.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988775 4 44567777777778889999999999988764 34667899999999999999999999
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
+.+... .++.+...|..-|....+.++-..+...+++... |.-+.-.....+....+++.|.+-|+++++.+|++..
T Consensus 776 makALQ-ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 776 MAKALQ-ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHH-hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 888854 2455777888888888899998888888888754 4444555667788888999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCE
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDK 561 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 561 (609)
+|..+...+.+.|.-++-.+++.+..... |.-+..|..+...
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~ 894 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhh
Confidence 99999999999999999999998887643 3345566655444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-10 Score=108.89 Aligned_cols=446 Identities=11% Similarity=0.069 Sum_probs=334.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCH
Q 007288 85 AGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM 164 (609)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 164 (609)
.+.+...+.+.|.-++.+..+- ++.+. -|..++++...++.|..++...++. ++-+..+|.+-...--..| +.
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng-n~ 456 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG-NV 456 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC-CH
Confidence 3445566777788888888774 22222 3445667777888899999888775 4447778877777777777 88
Q ss_pred HHHHHHHccCCC--------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCchhHH
Q 007288 165 DNARLVFNDMKW--------KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN--PYSFSIAVRACASTGWVSFGK 234 (609)
Q Consensus 165 ~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~ 234 (609)
+...++.++-.. -+...|-.=...|-..|..-.+..+....+..|+.-. ..||..-...|.+.+-++-+.
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 888888875431 2455566666677777888888888888877776633 357888888899999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCC
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERF 310 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~ 310 (609)
.+|...++. ++.+...|......--..|..++-..+|++... .....|-....-+-..| ...|..++....+...
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 999988876 466778888888877788888988888888764 35566777777788888 8899999888887532
Q ss_pred CCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-chHHHHH
Q 007288 311 SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDL-VTWTSMM 387 (609)
Q Consensus 311 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li 387 (609)
-+...+...+........++.|..+|.+... ..++..+|..-++..--.++.++|.+++++..+ |+- ..|-.+.
T Consensus 616 -nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 616 -NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred -CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 2556777777778888899999999988766 457777887777777778999999999988875 333 4677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
+.+-+.++.+.|.+.|..-.+. -|+.. .|..|...=.+.|.+..|..++++..-.+ +-+...|-..|.+=.+.|..
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 8888888888888887765553 45544 66666666677889999999999986655 34778888889999999999
Q ss_pred HHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 467 KEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 467 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.|..++.+. ....+...|..-|...-+.++-......+++.. .|+.....++..+....+++.|.+.|.+..+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce----~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE----HDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998887766 333466777777777777766555555544432 3778888899999999999999999999887
Q ss_pred CCCc
Q 007288 545 MGSK 548 (609)
Q Consensus 545 ~~~~ 548 (609)
.+..
T Consensus 846 ~d~d 849 (913)
T KOG0495|consen 846 KDPD 849 (913)
T ss_pred cCCc
Confidence 6543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-12 Score=127.03 Aligned_cols=320 Identities=14% Similarity=0.112 Sum_probs=221.0
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhCC-chHHH
Q 007288 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM---TEKDLITWNTIIAGYEKSG-SSECL 299 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~a~ 299 (609)
+...|+.++|..++.++++.. +.+...|.+|...|-..|+.+++...+-.. ...|...|..+..-..+.| +.+|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 333477777777777777764 556667777777777777777776655433 2345566777777777777 77777
Q ss_pred HHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhc
Q 007288 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA----NALIDMYAKCGNISDSQKIFSEM 375 (609)
Q Consensus 300 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 375 (609)
-.|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.|..-+ -..++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777643 233334444555666777777777777777765433332222 22344555666667777777665
Q ss_pred CC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHH
Q 007288 376 SD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG---------------------------VRPDRIVFMAVLT 423 (609)
Q Consensus 376 ~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~~~~~ll~ 423 (609)
.. -+...++.++..|.+...++.|......+.... +.++...+ .+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 53 244567777777888888888888777776521 22222221 1222
Q ss_pred HHhccCCHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhCCCh
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP---FKPDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~ 498 (609)
++......+....+..-+.+.+ +.-+...|.-+.++|...|++.+|+.+|..+- ..-+...|..+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3333443334444444444445 44457788999999999999999999999982 222577899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+.|.+.|++++...|++...-..|+..|.+.|+.++|.+.+..+..-+
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999887433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=116.59 Aligned_cols=214 Identities=15% Similarity=0.135 Sum_probs=172.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIEL 402 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 402 (609)
-.|+.-.+..-|+..++....++ ..|--+..+|....+.++....|+...+ .|..+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45778888888888887653333 3366777788999999999999988874 4667888888888888999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007288 403 FDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP 480 (609)
Q Consensus 403 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 480 (609)
|++.+. +.|+. ..|..+--+..+.+.++++...|++.++ .++-.+++|+.....+...++++.|.+.|+.. .+.|
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999987 45544 5777777777788999999999999965 35667889999999999999999999999887 3444
Q ss_pred C---------HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 481 D---------ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 481 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+ ..+-..++- +.-.+++..|..+++++++++|.....|..|+..-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 222222222 33448999999999999999999999999999999999999999999998764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-11 Score=123.29 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=205.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHH
Q 007288 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSIL 256 (609)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 256 (609)
++..+|.+++..-..+|+.+.|..++.+|++.|++.+..-|..|+-+ .++...++.+.+-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 57788888888888889999999999999999988888877777765 778888888888888889999988888877
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC------chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 257 DMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
..+.++|....+....+.-.--....+..+..+..... ..-....+.+..-.|+.-....|. +..-....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCC
Confidence 77777555322222111100001122223322211111 111222223322233333332232 22222335666
Q ss_pred HHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCCHHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGL---DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA---HGHGKEAIELFD 404 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 404 (609)
+.++++...+..--. ..++..+..++ .+.|.++..+...+-.....+... .....+..+++.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~l------------rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~ 425 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALL------------RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE 425 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence 666666655542111 11222233333 333444433322111111111111 111111111111
Q ss_pred HH------------HH----CCCCC-------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 405 EM------------VK----SGVRP-------DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 405 ~m------------~~----~g~~p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.. .. +...| -...-+.++..|+..-+..+++..-+.....-+. ..|..||+.+.
T Consensus 426 ~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~ 502 (1088)
T KOG4318|consen 426 NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMD 502 (1088)
T ss_pred HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHH
Confidence 11 00 00111 1123345555666666666666544444332222 67899999999
Q ss_pred hcCCHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc---cCCCCcchHHHHHHHHHhcCChH
Q 007288 462 RAGRVKEAYELIKSMP-----FKPDESVWGPLLGACKEHRLPNLGKLAALRVLD---LKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
.....+.|..+.++.. +.-|...+..+.+...+.+....+..++++..+ ..|........+.+..+..|+.+
T Consensus 503 ~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe 582 (1088)
T KOG4318|consen 503 LHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQE 582 (1088)
T ss_pred HHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHH
Confidence 9999999999999883 334666778888889999999999888888766 34444556677888888999999
Q ss_pred HHHHHHHHHHhCCCcc
Q 007288 534 EFAKFRKIMRGMGSKK 549 (609)
Q Consensus 534 ~A~~~~~~m~~~~~~~ 549 (609)
.-.++.+-+...|+.-
T Consensus 583 ~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 583 KLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999998888765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-11 Score=110.41 Aligned_cols=328 Identities=12% Similarity=0.084 Sum_probs=237.7
Q ss_pred CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHH
Q 007288 210 VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL-ITWNTIIA 288 (609)
Q Consensus 210 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~ 288 (609)
..-|..-+-.....+...|..+.|...+...+.. .+-....|..|... ..+.+.+..+.......+. ..--.+..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3344444444444556778888888888776654 23344444444333 2334444444433333211 11123344
Q ss_pred HHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCH
Q 007288 289 GYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DGNLALANALIDMYAKCGNI 365 (609)
Q Consensus 289 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 365 (609)
++.... .+++..-.......|+.-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 555555 777777777777777766666555566666778899999999999998742 13556666665433332222
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 366 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.---...-.+.+--+.|..++...|+-.++.++|+..|++..+. .|.. ..|+.+.+-|....+...|++.++.+.+.
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 22222222233345567778888899999999999999999984 5655 47777788899999999999999999886
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+ +.|-..|-.|.++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|+..|.+++...--+...|..|
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 6 348889999999999999999999999998 5666 788999999999999999999999999999877678999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 007288 523 SNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.+|.+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999988876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-11 Score=113.92 Aligned_cols=440 Identities=11% Similarity=0.093 Sum_probs=256.4
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCCC----CCccc-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHH--
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMPE----RDVVS-WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL-- 119 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-- 119 (609)
.+...|.+-|.......+|+..++-+.+ ||.-. --.+-..+.+..++.+|+.+|+.....-...+..+-..++
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3455566677777888999998887664 33322 2234456777888888888887776643333333332233
Q ss_pred --HHhhCCCChHHHHHHHHHHHHhCCCCCcch-hhHHHHHHHhcCCCHHHHHHHHccCCC----------------CChh
Q 007288 120 --KACKGMKSLSNAALVHGMAIKEGLEGSIYV-ENSLMDVYATCCISMDNARLVFNDMKW----------------KNDV 180 (609)
Q Consensus 120 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~~A~~~~~~~~~----------------~~~~ 180 (609)
-.+.+.|.++.|...|+...+.. |+..+ +|..+.++ -.| +.++..+.|..+.. |+..
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f-~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAF-AIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhhe-ecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34678888888888888887754 45444 44444444 445 77887777776532 1111
Q ss_pred hHH-----HHHHHHHhcCC--hhhHHHHHHHHHHCCCCCCHhh-HHH--------------------HHHHHHccCCchh
Q 007288 181 SWT-----TLITGYAHSGN--GYGGLGVFKEMLLEGVEMNPYS-FSI--------------------AVRACASTGWVSF 232 (609)
Q Consensus 181 ~~~-----~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t-~~~--------------------ll~~~~~~g~~~~ 232 (609)
..| ..++.+-+.+. .++++-.-.+++.--+.||-.. |.. -...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 122 22222222221 1222222122222222333111 000 0123566788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHhCC-chHHHHHHHH
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCR--FDCLSDANQYFDEMTEKDLITWNTII-----AGYEKSG-SSECLNMFSK 304 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~-~~~a~~~~~~ 304 (609)
|.+++.-..+..-..-...-+.|-..+.- -.++..|...-+.....|. ||.-. .....+| .++|.+.|++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 88888777766533333333333333222 3456666666555443221 22111 1122344 7778888877
Q ss_pred hHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcc
Q 007288 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLV 381 (609)
Q Consensus 305 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 381 (609)
.....-.-....|+ +--.+...|++++|...|-.+... +..+..+..-+.+.|-...+...|.+++-.... .|+.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 76542211122222 222345677888887777665432 123555666677777777888888887776653 4666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH-HH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD-LL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~ 460 (609)
....|...|-+.|+-..|.+.+-+-..- ++.|..|...|...|....-+++++.+|++..- +.|+..-|..++. ++
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 7777778888888888887766554443 555667777777778888888888888887633 5678777776664 44
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCC
Q 007288 461 GRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRL 497 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 497 (609)
.+.|++.+|+++++.. .+..|..+...|++.|...|-
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 5678888888888777 455577777777777766653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=137.55 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=112.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 398 (609)
...+...++.+.|...++.+...+.. +...+..++.. ...+++++|.+++...-+ ++...+..++..+...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 33445567777777777777765533 55566667766 688888888888876643 456667778888999999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007288 399 AIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM- 476 (609)
Q Consensus 399 A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 476 (609)
+.++++.+.... ..++...|..+...+.+.|+.++|++.+++..+... .|......++..+...|+.+++.++++..
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999987633 345667888888999999999999999999977552 25778889999999999999988888776
Q ss_pred -CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 477 -PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 477 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
....|...|..+..++...|+.++|...++++.+..|+|+.....++.++...|+.++|..++++..+
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12345667888999999999999999999999999999999999999999999999999999877643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-09 Score=99.90 Aligned_cols=474 Identities=11% Similarity=0.083 Sum_probs=310.8
Q ss_pred cCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHH
Q 007288 59 EGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVH 135 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 135 (609)
++++..|+.+|+.... .++..|-.-+..-.++.+++.|..+|++....=+..|.. |--.+-.=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 5667777888877653 556667777777778888888888888887642222322 222222233457888888888
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 007288 136 GMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM--KWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213 (609)
Q Consensus 136 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 213 (609)
+.-.+ .+|+...|.+.++.-.+.. .++.|..++++. ..|++.+|--..+.-.+.|+...|..+|....+. -.|
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 87655 5688888888888888887 888888888875 3578888888888888888888888888877663 112
Q ss_pred HhhHHHHHHHH----HccCCchhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHH--------HhcCCC-
Q 007288 214 PYSFSIAVRAC----ASTGWVSFGKLIHAAVIKHGFGSN--LPVMNSILDMYCRFDCLSDANQYF--------DEMTEK- 278 (609)
Q Consensus 214 ~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~~- 278 (609)
...-..++.++ ..+..++.|.-+|...+.. ++.+ ...|..+...=-+.|+-....+.. +.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 33333333343 3456677777778777765 2333 345555555545555544443332 222222
Q ss_pred --ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCH-------HhHHHHHHHH---HhhccHHHHHHHHHHHHHhCC
Q 007288 279 --DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC-------FTFTSIIAAC---ATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 279 --~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 345 (609)
|-.+|-..+..--..| .+...++|++.+.. ++|-. ..|.-+=-+| ....+.+.+.++++...+ -+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LI 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc
Confidence 4456766777777777 88888889888764 45522 1121111111 356788889999988887 35
Q ss_pred CCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007288 346 DGNLALANALIDMYA----KCGNISDSQKIFSEMS--DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 419 (609)
+....|+..+--+|+ ++.++..|.+++.... -|...+|...|..-.+.++++.+..++++.++-+ +-|..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 556666665544443 6788899999998876 3667788888888888899999999999998853 33556888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhc-CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH----
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDY-NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACK---- 493 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~---- 493 (609)
.....=...|+.+.|..+|.-+... ........|.+.|+-=...|.++.|..+++++ ...+...+|-++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 8877778889999999999988542 23334556777777778899999999999887 44455667777664322
Q ss_pred -hCC-----------ChHHHHHHHHHHhc----cCCCC--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 494 -EHR-----------LPNLGKLAALRVLD----LKPNM--MGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 494 -~~~-----------~~~~a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
+.+ +...|..+|+++.. ..|.. ......+.+.=...|...+...+-.+|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 333 56678888888755 23311 112223333334456555555555555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-09 Score=102.41 Aligned_cols=459 Identities=11% Similarity=0.068 Sum_probs=332.8
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 155 (609)
+...|-.-...-..++++..|.++|++..... .-+...|.-.+..=.+...+..|..++++.+..-+..|. .|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 34445554555566788999999999998754 235555666667777888899999999998876544333 3444444
Q ss_pred HHHhcCCCHHHHHHHHccCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhH
Q 007288 156 VYATCCISMDNARLVFNDMK--WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG 233 (609)
Q Consensus 156 ~~~~~g~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 233 (609)
+--..| ++..|.++|++.. +|+..+|++.|+.-.+-+.++.|..+|+...- +.|+..+|.--.+-=.+.|++..+
T Consensus 150 mEE~Lg-Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 150 MEEMLG-NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHhc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 555567 9999999999875 48999999999999999999999999999976 469999998888888899999999
Q ss_pred HHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-ChhHHHHHHHH---HHhCC-chHHHH--
Q 007288 234 KLIHAAVIKH-G-FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE----K-DLITWNTIIAG---YEKSG-SSECLN-- 300 (609)
Q Consensus 234 ~~~~~~~~~~-g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~---~~~~~-~~~a~~-- 300 (609)
..+|+.+++. | -..+...+.+....=.++..++.|..+|+-..+ . ....|...... |+... .++++-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999988764 2 122344566666666677788888888765443 2 12333333332 32222 444442
Q ss_pred ---HHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCch------hHHHHHHHHH---HhcCCHHHH
Q 007288 301 ---MFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL------ALANALIDMY---AKCGNISDS 368 (609)
Q Consensus 301 ---~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~~~g~~~~A 368 (609)
-|+.++..+ +-|-.++.-.+......|+.+...++|+.++..-.+... .+|--+--++ ....+.+.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 233444432 346667777788888889999999999999876432221 2222222222 347889999
Q ss_pred HHHHHhcCC--C-CcchHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 369 QKIFSEMSD--R-DLVTWTSMM----IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 369 ~~~~~~~~~--~-~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.++|+...+ | ..+||..+- .--.++.+...|.+++...+ |.-|-..+|...|..=.+.+.++.+..++++.
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999988775 2 345555443 33457789999999998876 57899999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.+.+. -+..+|......=...|+.+.|..+|+-.-.+|. ...|.+.|..-...|.++.|..+++++++..+ ...
T Consensus 464 le~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~k 541 (677)
T KOG1915|consen 464 LEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVK 541 (677)
T ss_pred HhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cch
Confidence 88774 3788888888888899999999999998844553 45666777777789999999999999999877 344
Q ss_pred hHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYA-----AEG-----------KWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 544 (609)
.|...+.--. +.| ....|..+|++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6776665544 334 45677777777643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-11 Score=105.96 Aligned_cols=284 Identities=11% Similarity=0.088 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch------hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHH
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMTEK-DL------ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 322 (609)
+.-+|.+.|.+.|..|.|+++-+.+.++ |. .....|..-|...| .+.|..+|..+.+.+. --......++.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 3344444455555555555544444332 11 11223444455556 6666666665554321 12233445555
Q ss_pred HHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 007288 323 ACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIEL 402 (609)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (609)
.|....+|++|..+-.++.+.+-.+... -+. ..|.-+...+....+.++|..+
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA------------------------qfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRV---EIA------------------------QFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchh---HHH------------------------HHHHHHHHHHhhhhhHHHHHHH
Confidence 5555566666666555555544222110 011 1233344444455566666666
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007288 403 FDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP 480 (609)
Q Consensus 403 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 480 (609)
+.+..+. .|+.+ .-..+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++.+.++.++ ...+
T Consensus 203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6666653 23332 223344555666666666666666655554444556666666666667666666666655 3334
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH---hcCChHHHHHHHHHHHhCCCcccCceeEEE
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA---AEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 557 (609)
....-..+...-....-.+.|.....+-+...| +...+..++.... ..|.+.+....++.|....++..|.+....
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 444444444444445555666666666666666 3444444444433 335678888889999988888888887777
Q ss_pred eCCEEEEE
Q 007288 558 VRDKVCGF 565 (609)
Q Consensus 558 ~~~~~~~~ 565 (609)
++...|.|
T Consensus 360 CGF~a~~l 367 (389)
T COG2956 360 CGFTAHTL 367 (389)
T ss_pred cCCcceee
Confidence 76665555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-11 Score=118.00 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=151.4
Q ss_pred HhCC-chHHHHHHHHhHHCCCCCCHHhHH--HHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007288 291 EKSG-SSECLNMFSKMKSERFSPNCFTFT--SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISD 367 (609)
Q Consensus 291 ~~~~-~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 367 (609)
.+.| .+.|...+.++.+. .|+...+. .....+...|+.+.|...++.+.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 3444 55555555555442 33332222 22344555666666666666666554 3445566666666666677777
Q ss_pred HHHHHHhcCCCCc-----------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007288 368 SQKIFSEMSDRDL-----------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 368 A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
|.+++..+.+... .+|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 7766666653211 12233333333444455555555555332 24466677777888888888888888
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+++..+. +++.... ++.+....++.+++++.+++. ...|+.. ....+...|.+.+++++|.+.|+++++..|+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88877652 3444322 233334558888888887776 4455444 4556668888888888888888888888884
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...+..++.++.+.|+.++|.+++++-..
T Consensus 361 -~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 -AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677888888888888888888876644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-11 Score=117.13 Aligned_cols=284 Identities=12% Similarity=0.042 Sum_probs=161.0
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCCHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN--SILDMYCRFDCLSDAN 269 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~A~ 269 (609)
.|+++.|.+.+....+.+-. ....|.....+....|+++.+...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35666666555544332111 1112222233335556666666666665543 33332221 2244555556666665
Q ss_pred HHHHhcCCC---ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 007288 270 QYFDEMTEK---DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 270 ~~~~~~~~~---~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 345 (609)
..++++.+. +......+...|.+.| +++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 555554431 2333444444444444 44444444444443322111 110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 01222233333334455566666666652 35667777778888888888888888888773 4444222 23
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 501 (609)
.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|++. ...|+..++..+..++.+.|+.++|
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445588888888888886543 335666778888888888888888888887 6678888888888888888888888
Q ss_pred HHHHHHHhcc
Q 007288 502 KLAALRVLDL 511 (609)
Q Consensus 502 ~~~~~~~~~~ 511 (609)
.+++++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 8888887664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=123.81 Aligned_cols=200 Identities=13% Similarity=0.038 Sum_probs=149.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAV 421 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 421 (609)
+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.. ..|-.+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhh
Confidence 445677788888888888888888888887753 446777777777788888888888887764 33433 366667
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 499 (609)
...|.+.++++.|.-.|+++.+.+.. +......+...+.+.|+.++|+++++++ ...| |+..--.-...+...++++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 77788888888888888888775532 5556667777888888888888888887 3333 3444444556677778888
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
+|+..++++.++-|++...|..++..|-+.|+.+.|+.-|--+.+..++
T Consensus 575 eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 8888888888888888888888888888888888888888887775543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-10 Score=105.62 Aligned_cols=359 Identities=12% Similarity=0.072 Sum_probs=247.3
Q ss_pred HHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhH--HHHHHHHHccCCchh
Q 007288 155 DVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSF--SIAVRACASTGWVSF 232 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~ 232 (609)
-.+-+.| ....|+..|......-+..|.+.+....-..+.+.+..+ .. |...|..-+ -.+..++-...+.++
T Consensus 172 vv~k~~~-~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 172 VVLKELG-LLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHhhc-hHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3344555 778888888777665555566555444333333332222 21 122121111 123445555667788
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCC--chHHHHHHHH
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK------DLITWNTIIAGYEKSG--SSECLNMFSK 304 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~--~~~a~~~~~~ 304 (609)
+.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+. |..+|+.++-.-.... .--|..++.-
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888877777777777778888999999999998764 4456665554332221 1222222221
Q ss_pred hHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcc
Q 007288 305 MKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLV 381 (609)
Q Consensus 305 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 381 (609)
... -+.|...+.+-|+-.++.++|...|++..+.+ +.....++.+.+-|....+...|...++...+ .|-.
T Consensus 326 ---dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 326 ---DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred ---ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 112 33466677788888899999999999998876 44567788888899999999999999998875 4667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
.|..|.++|.-.+...=|+-.|++..+. +| |...|..|..+|.+.++.++|+..|......| ..+...+..|.+.|
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 8889999999999999999999998884 55 55689999999999999999999999987766 34668888899999
Q ss_pred hhcCCHHHHHHHHHhC-------C-CCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 461 GRAGRVKEAYELIKSM-------P-FKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
-+.++.++|...|++. + ..|... ...-|..-+.+.+++++|..........++ .
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-----------------e 539 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-----------------E 539 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----------------h
Confidence 9999999998888765 2 222121 122233557788888888776666655543 3
Q ss_pred hHHHHHHHHHHHhC
Q 007288 532 WEEFAKFRKIMRGM 545 (609)
Q Consensus 532 ~~~A~~~~~~m~~~ 545 (609)
.++|..+++++++.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 57778888777653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=119.83 Aligned_cols=247 Identities=10% Similarity=0.099 Sum_probs=192.1
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL--DGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+..--+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 58889999884443 333446667788899999999999999999887531 235566766654333222221111112
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChh
Q 007288 373 SEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKE 451 (609)
Q Consensus 373 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
-......+.+|.++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.......+ +-.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYn 490 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYN 490 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhH
Confidence 222234678999999999999999999999999998 566 5679998888899999999999999988553211 233
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.|-.|.-.|.+.++++.|.-.|+++ .+.|.. +....+...+.+.|+.++|+.+++++..++|.|+..-...+..+...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 4445778899999999999999988 788854 45555667799999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 007288 530 GKWEEFAKFRKIMRGM 545 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~ 545 (609)
+++++|.+.++++++-
T Consensus 571 ~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL 586 (638)
T ss_pred cchHHHHHHHHHHHHh
Confidence 9999999999999873
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-10 Score=114.61 Aligned_cols=283 Identities=12% Similarity=0.015 Sum_probs=158.1
Q ss_pred cCChhhHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNP-YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQ 270 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (609)
.|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666555443 2332 22233344455556666666666665543211111222333555555566655555
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchh
Q 007288 271 YFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLA 350 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 350 (609)
.++.+.+ .. +-+...+..+...+...|+++.+...+..+.+.+..+...
T Consensus 175 ~l~~l~~------------------------------~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 175 GVDKLLE------------------------------MA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred HHHHHHH------------------------------hC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 5555443 21 1122233344444444444444444444444443222111
Q ss_pred HH-------HHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 007288 351 LA-------NALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV--F 418 (609)
Q Consensus 351 ~~-------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~ 418 (609)
.. ..++..-......+.....++...+ .+...+..+...+...|+.++|.+++++..+. .||... +
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 11 1111111112223444445555543 36677777888888888888888888888875 344331 1
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHh---CCCCCCHhhHHHHHHHH
Q 007288 419 -MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK--EIYGCVVDLLGRAGRVKEAYELIKS---MPFKPDESVWGPLLGAC 492 (609)
Q Consensus 419 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~l~~~~ 492 (609)
....-.....++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+. ....|+...+..+...+
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 111122334577788888887775432 2233 5666888888899999999998883 25678888888888888
Q ss_pred HhCCChHHHHHHHHHHhc
Q 007288 493 KEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~ 510 (609)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999988888755
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.2e-10 Score=110.67 Aligned_cols=279 Identities=10% Similarity=0.023 Sum_probs=188.0
Q ss_pred cCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHH--hHHHHHHHHHhhccHHHHHH
Q 007288 262 FDCLSDANQYFDEMTEK--D-LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCF--TFTSIIAACATLAALSCGQQ 335 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~ 335 (609)
.|+++.|.+.+.+..+. + ...+-....+..+.| .+.|.+.+.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444321 1 112222233444445 56666666665543 24432 33334677788999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 336 VHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWT----SMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.++.+.+.. +-+..+...+..++...|++++|.+.+..+.+. +...+. ....+....+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 556678899999999999999999999998853 222232 111222333344444556666665
Q ss_pred CCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh
Q 007288 409 SGV---RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY-GCVVDLLGRAGRVKEAYELIKSM-PFKPDES 483 (609)
Q Consensus 409 ~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 483 (609)
... +.+...+..+...+...|+.++|.+.+++..+.........+ ....-.....++.+.+.+.+++. ...|+..
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 321 137788888999999999999999999999764432221111 11122223457888888888776 4455544
Q ss_pred ---hHHHHHHHHHhCCChHHHHHHHH--HHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 484 ---VWGPLLGACKEHRLPNLGKLAAL--RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 484 ---~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...++...|.+.|++++|.+.++ ...+..|+ ...+..++.++.+.|+.++|.+++++-..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678899999999999999999 57778884 55678999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.7e-12 Score=125.92 Aligned_cols=267 Identities=15% Similarity=0.152 Sum_probs=202.9
Q ss_pred HHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 007288 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD 379 (609)
Q Consensus 300 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (609)
.++-.+...|+.|+..||..+|.-||..|+.+.|. +|..|.-...+.+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999999999999999999999999999887765 788
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 458 (609)
..+|..|..+|..+||... ++..++ -...+...+...|.-..-..++..+ -..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999876 222222 2233455566667666666666655 33445555543 455
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCC-ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 459 LLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
...-.|.++.+++++..+|.....-+...+++-+.... .+++-..+.+...+ .| ++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 56677889999999998864322222222354444333 44555555555555 66 78999999999999999999999
Q ss_pred HHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCcccccccCC
Q 007288 538 FRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLE 606 (609)
Q Consensus 538 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~ 606 (609)
++..|+++|+.-++++.|..+ .|.. . ...++.+..-|++.|+.||.+++..||.
T Consensus 226 ll~emke~gfpir~HyFwpLl--------~g~~---~----~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLL--------LGIN---A----AQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HHHHHHHcCCCcccccchhhh--------hcCc---c----chHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 999999999999999999865 2211 1 2234678999999999999999988875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=123.16 Aligned_cols=252 Identities=14% Similarity=0.120 Sum_probs=68.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFS-IAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
...+.+.|++++|++++++......+|+...|. .+...+...++.+.|.+.++.+...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445556666666666665444332223333333 23334445666666666666666554 2244455555555 56666
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCC-CCCCHHhHHHHHHHHHhhccHHHHHHHHHHH
Q 007288 265 LSDANQYFDEMTE--KDLITWNTIIAGYEKSG-SSECLNMFSKMKSER-FSPNCFTFTSIIAACATLAALSCGQQVHAGI 340 (609)
Q Consensus 265 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 340 (609)
+++|.+++...-+ ++...+..++..+.+.+ ++++..+++...... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666554422 23344444555555555 555555555544321 2334444555555555666666666666666
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
.+.. +.|..+.+.++..+...|+.+++..++.... ..|...+..+..+|...|+.++|+..|++..+.. +.|...
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 5553 2234455555555555565555444444433 2344455555555556666666666666555531 224445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
...+..++...|+.++|.++.+++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555555666666665555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-09 Score=97.09 Aligned_cols=283 Identities=12% Similarity=0.074 Sum_probs=151.9
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
.|++..|.++..+-.+.+-. ....|.....+.-..|+.+.+..++.++.+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666776666665554332 23344455555566666666666666666653345555556666666666666666655
Q ss_pred HHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 007288 272 FDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG 347 (609)
Q Consensus 272 ~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 347 (609)
++++.+ .+.........+|.+.| +.....++.+|.+.|+-.|...-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 554432 34455555555555555 555555555555555433322110 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 424 (609)
...+++.+++-....+..+.-...|+... +.++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 11233334443333344444444555554 234555555666666777777777777777666655551 11123
Q ss_pred HhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+.+.++...-++..+.- ...+- ++..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|+-+..++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 44555555555555544 22222 3345555666666666666666666544 45556666666666666666666666
Q ss_pred HHHHHHh
Q 007288 503 LAALRVL 509 (609)
Q Consensus 503 ~~~~~~~ 509 (609)
+..++.+
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-09 Score=99.49 Aligned_cols=476 Identities=12% Similarity=0.017 Sum_probs=273.3
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 119 (609)
.+-+..-+..+++-+..+.++.-|.-+-+++- ..|+..--.+.+.+.-.|++.+|..+...-.-. ..|..+.....
T Consensus 12 d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 12 DELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 34455556666666666666766666665553 234444556667777777777777766554322 23556666666
Q ss_pred HHhhCCCChHHHHHHHHHH----HHhC---------CCCCcch-----------hhHHHHHHHhcCCCHHHHHHHHccCC
Q 007288 120 KACKGMKSLSNAALVHGMA----IKEG---------LEGSIYV-----------ENSLMDVYATCCISMDNARLVFNDMK 175 (609)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~----~~~~---------~~~~~~~-----------~~~ll~~~~~~g~~~~~A~~~~~~~~ 175 (609)
.++.+..++++|..++... ..-. +.++..- +-.--..|.... +.++|...|.+..
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~-n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALD-NREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhc-cHHHHHHHHHHHH
Confidence 6677777777777666621 1000 0000000 000011122222 4455555554444
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCC----CCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH
Q 007288 176 WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGV----EMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251 (609)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 251 (609)
..|+..|.++...-.. ..-.+.+.++.+..... +-+......+.........-+.....-.+..-.+..-+..+
T Consensus 169 ~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred hcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 4444444333222111 11112122222221100 11111111111111000000000000000111233445556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhh
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 327 (609)
.....+-+...+++.+..++++.+.+.+ ...+-.-|.++...| ..+-..+=.+|.+. .+-...+|.++.--|...
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 6666777778888888888888887643 334555566777777 66666666677664 344567888888888888
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
|+..+|.+.|.+....+ +.-...|-.+...|.-.|.-++|...+....+ .....+--+..-|.+.++.+.|.+.|.
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 88888988888776543 12234566777888888888888877766553 111222224456777888888988888
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCC----CChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007288 405 EMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVN----PNKEIYGCVVDLLGRAGRVKEAYELIKSM- 476 (609)
Q Consensus 405 ~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 476 (609)
+... +-|+. ...+-+.-..-..+.+.+|..+|+..... .+. .-..+++.|..+|.+.+.+++|+..+++.
T Consensus 405 ~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 8776 45544 45555555556678888888888877411 111 13456778888888999999998888877
Q ss_pred CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 477 PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 477 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
.. ..+..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..+.
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 22 336777888888888889999999999999999997765555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-09 Score=93.98 Aligned_cols=285 Identities=13% Similarity=0.102 Sum_probs=186.4
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS---NLPVMNSILDMYCRFDCLSDA 268 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A 268 (609)
+.+.++|.++|-+|.+.. +-+..+-.+|.+.|.+.|.+|.|.++++.+.++.--+ -..+.-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 568899999999998742 1133344577788899999999999999988752111 123456677889999999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 269 NQYFDEMTEKD---LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 269 ~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
+.+|..+.+.+ ......|+..|.... |++|+++-.++...+-.+... -|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HHH----------------------
Confidence 99999998743 345677889999999 999999999988765444322 111
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
..|.-|...+.-..+.+.|..++.+..+. .+..--.+...+...|++..|++.++...+.+..--..+...|
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11223333344445555555555555432 2233334556677788888888888888876544444577778
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhC---CC
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL-IKSMPFKPDESVWGPLLGACKEH---RL 497 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~---~~ 497 (609)
..+|.+.|+.++....+..+.+....++ .-..+.+.-....-.+.|... .+.+.-+|+...+..|+...... |.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 8888888888888888888865443333 333344433334444555444 44556678888888888765433 33
Q ss_pred hHHHHHHHHHHhc
Q 007288 498 PNLGKLAALRVLD 510 (609)
Q Consensus 498 ~~~a~~~~~~~~~ 510 (609)
..+....++.++.
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 4444555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-08 Score=97.33 Aligned_cols=402 Identities=10% Similarity=-0.006 Sum_probs=253.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHH
Q 007288 80 WTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPN-AFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYA 158 (609)
Q Consensus 80 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 158 (609)
+-...+-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+|+++.+--...++.++. -+-.+....+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44556677888888999998888887 4677 667777777788888888887776666664432 1234445555666
Q ss_pred hcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHH--------HHH-C--CCCCCHhhHHHHHHHHHcc
Q 007288 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKE--------MLL-E--GVEMNPYSFSIAVRACAST 227 (609)
Q Consensus 159 ~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~-~--g~~p~~~t~~~ll~~~~~~ 227 (609)
..| ++++|+.= .+-.+++.+|....-..-+.+++++ -.. . .+-|+.....+....+...
T Consensus 195 ~lg-~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 195 QLG-KFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred hhc-cHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 666 66666431 2223333343333333333333322 111 1 2345555555555444321
Q ss_pred C------CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhcC-------CC---ChhHHHHHHHH-
Q 007288 228 G------WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR-FDCLSDANQYFDEMT-------EK---DLITWNTIIAG- 289 (609)
Q Consensus 228 g------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~-------~~---~~~~~~~li~~- 289 (609)
- ..+++....... +=..+.. ...+..|...+.+-. .. |... .-+..+
T Consensus 265 ~~~~~~~~~~ksDa~l~~~--------------l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al 329 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEA--------------LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEAL 329 (606)
T ss_pred ccccccCCCccchhhHHHH--------------HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHH
Confidence 1 011111111110 0000100 011222222222211 11 1111 112222
Q ss_pred ------HHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007288 290 ------YEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362 (609)
Q Consensus 290 ------~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (609)
+.-.| ...|...|+..+.....++. .|.-+...+...++.++....|....+.+ +.++.+|..-.+++.-.
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLL 407 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHH
Confidence 23344 67888889988876433333 27778888999999999999999998876 55677787788888888
Q ss_pred CCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 363 GNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 363 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
+++++|..=|++...- ++..|-.+..+.-+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999998853 4556666766777889999999999999986 55556799999999999999999999999
Q ss_pred HhhhcCCC-----CC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 440 SMNDYNVN-----PN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 440 ~~~~~~~~-----~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
..++.... .+ +.+-..++..- -.+++..|.+++++. .+.| ....+..|...-.++|+.++|+++|++...
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98653322 11 12222222222 338999999999988 5555 456788899999999999999999999877
Q ss_pred cCC
Q 007288 511 LKP 513 (609)
Q Consensus 511 ~~p 513 (609)
+-.
T Consensus 566 lAr 568 (606)
T KOG0547|consen 566 LAR 568 (606)
T ss_pred HHH
Confidence 543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-09 Score=97.57 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=156.4
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------cchH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD-----------LVTW 383 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~ 383 (609)
..+.+........|+.+.|..-...+.+.+ +-++.+.....++|.+.|++.....++..+.+.. ..+|
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 334444444555556666665555555544 3344555666666666666666666666666422 1367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
+.+++-....+..+.-...|+..-.+ .+-+...-.+++.-+...|+.++|.++..+..+.+..|+.. .+ -.+.+-
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~~-~~~l~~ 307 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---RL-IPRLRP 307 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---HH-HhhcCC
Confidence 77777776666666666677666543 45566677788888999999999999999998878776622 22 234455
Q ss_pred CCHHHHHHHHHh----CCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 464 GRVKEAYELIKS----MPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 464 g~~~~A~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
++.+.-++..++ .+..| ..+.+|...|.+++.+.+|...++.+++..| +...|..++.++.+.|+..+|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence 665554444433 35444 6788889999999999999999999999999 6899999999999999999999998
Q ss_pred HHHHh
Q 007288 540 KIMRG 544 (609)
Q Consensus 540 ~~m~~ 544 (609)
++..-
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 88764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-08 Score=88.18 Aligned_cols=468 Identities=10% Similarity=0.033 Sum_probs=282.6
Q ss_pred HHHHHccCChhHHHHhhccCCCCC---cccHH-HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCCh
Q 007288 53 IKSYFDEGLIEEARTLFDEMPERD---VVSWT-VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSL 128 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (609)
++-+....++..|+.+++.-...+ ....+ .+.-.+.+.|++++|...|..+... -.|+...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 556667788999998887544211 11233 3444567889999999999988774 345666666666666667888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhh-HHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVEN-SLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
.+|..+-... |+....+ .|+....+.+ +-++-...-+.+... ...--+|.....-.-.+.+|+++|.....
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahkln-dEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLN-DEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhC-cHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765443 3333333 4445555555 655555544444332 22233444444445578899999999876
Q ss_pred CCCCCCHhhHHHHHHH-HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 007288 208 EGVEMNPYSFSIAVRA-CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTI 286 (609)
Q Consensus 208 ~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 286 (609)
. .|+-...+.-+.. |.+..-++-+.+++.--.+. ++.+....|.......+.=.-..|..-...+...-...| ..
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f 255 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PF 255 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hh
Confidence 5 3455555554444 45777778888888776665 344455555555444443222222222222221111111 12
Q ss_pred HHHHHhCC------chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHH--
Q 007288 287 IAGYEKSG------SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM-- 358 (609)
Q Consensus 287 i~~~~~~~------~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-- 358 (609)
+.-+++.+ -+.|++++-.+.+. .|. .-..++-.+.+.+++.+|..+.+++.. ..|...+...++.+
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 33333333 36677776665542 232 223455567788999998888776531 12222232323222
Q ss_pred ---HHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007288 359 ---YAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL 430 (609)
Q Consensus 359 ---~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 430 (609)
......+.-|.+.|+..-+ .++.--.++..++.-..++++++..++....- +.-|..---.+..+.+..|.
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcC
Confidence 1122235567777776653 23344566777777778899999888888775 33333333457788999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 508 (609)
+.+|.++|-......++ |..+|. .|..+|.++++++.|.+++-++.-..+..+...+| +-|.+.+.+=-|-..|..+
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999877554444 444554 56688999999999999998886544566666666 6688888888888888888
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccC
Q 007288 509 LDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEV 551 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 551 (609)
..++| ++..|. |+--....+|..+....-.+.|
T Consensus 488 E~lDP-~pEnWe---------GKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 488 EILDP-TPENWE---------GKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HccCC-CccccC---------CccchHHHHHHHHHcCCCCCCc
Confidence 88888 455443 3333344556666554333333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-09 Score=108.03 Aligned_cols=231 Identities=18% Similarity=0.199 Sum_probs=175.2
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHh-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRR-----G-LDGNLA-LANALIDMYAKCGNISDSQKIFSEMSD-------R- 378 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 378 (609)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888899999999999999877654 2 123332 334577888999999999999988762 1
Q ss_pred ---CcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHhhh---cC
Q 007288 379 ---DLVTWTSMMIGYGAHGHGKEAIELFDEMVK-----SGVRP-DRI-VFMAVLTACSHAGLVDEGLKYFKSMND---YN 445 (609)
Q Consensus 379 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~ 445 (609)
-..+++.|..+|.+.|++++|...+++..+ .|..+ ... .++.+...|+..+++++|..+++...+ .-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235788888899999999999888877654 12222 222 566777889999999999999987732 11
Q ss_pred CCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------C--CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhc-
Q 007288 446 VNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM-------P--FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLD- 510 (609)
Q Consensus 446 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 510 (609)
+.++ ..+++.|...|...|++++|.++++++ . ..+ ....++.|..+|.+.+++++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467899999999999999999999887 1 122 245677788889999999999999988765
Q ss_pred ---cCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 511 ---LKP---NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 511 ---~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..| +...+|..|+.+|.+.|++++|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 4466888999999999999999999988864
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-10 Score=102.02 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677778888888888888887653 2 34567778888888999999999999888753 33456777788888
Q ss_pred hccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
...|++++|...++...+... ......+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999865322 223456777888899999999999999887 3344 3567778888899999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988888888888899999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-12 Score=83.99 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=46.7
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhC
Q 007288 75 RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124 (609)
Q Consensus 75 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (609)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-07 Score=90.91 Aligned_cols=437 Identities=10% Similarity=0.056 Sum_probs=266.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhH--HHHHHH-
Q 007288 82 VMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENS--LMDVYA- 158 (609)
Q Consensus 82 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~- 158 (609)
+=+.-+..+|++++|.....++...+ +-|...+..-+-++.+.+.+++|..+.+. .+. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHH
Confidence 34556678899999999999999865 33556677777888999999998754432 221 112222 244554
Q ss_pred -hcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCchhHHHH
Q 007288 159 -TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN-PYSFSIAVRACASTGWVSFGKLI 236 (609)
Q Consensus 159 -~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 236 (609)
+.+ ..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-.. -.+
T Consensus 90 Yrln-k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~--- 161 (652)
T KOG2376|consen 90 YRLN-KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV--- 161 (652)
T ss_pred HHcc-cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH---
Confidence 556 899999999966666666777777889999999999999999988754311 1111122211111 011
Q ss_pred HHHHHHhCCCCChhHHH---HHHHHHHhcCCHHHHHHHHHhc--------CCCCh----------hHHHHHHHHHHhCC-
Q 007288 237 HAAVIKHGFGSNLPVMN---SILDMYCRFDCLSDANQYFDEM--------TEKDL----------ITWNTIIAGYEKSG- 294 (609)
Q Consensus 237 ~~~~~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~~- 294 (609)
..+......| ..+|. .....+...|++.+|+++++.. .+.|. ..---|.-.+...|
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1122222223 22332 2345677889999999999887 21111 11223445677788
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHH---HHhhcc-HH-HHHHHHH------------HHHHhCCCCchhHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAA---CATLAA-LS-CGQQVHA------------GIVRRGLDGNLALANALID 357 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~---~~~~~~-~~-~a~~~~~------------~~~~~~~~~~~~~~~~l~~ 357 (609)
..+|..+|...+... .+|........+- ...-.+ .+ .+...++ .+.... ......-+.++.
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999988864 3454332222221 111111 11 0111111 111110 111111233444
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-cchHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRD-LVTWTSMMIGYG--AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
+| .+.-+.+.++-..+.... ...+.+++.... +...+.+|.+++...-+....-........+......|+++.|
T Consensus 318 l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 43 355566666666666422 344555554432 2235778888888776642222234555666778899999999
Q ss_pred HHHHH--------HhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHhhHHHHHHHHHhCCC
Q 007288 435 LKYFK--------SMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--------PFKP-DESVWGPLLGACKEHRL 497 (609)
Q Consensus 435 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~ 497 (609)
.+++. .+.+.+..| .+...++..+.+.++.+.|.+++.+. ...+ -..++.-+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 555555444 45556778888888877777776655 1111 12334444455667899
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
.++|...++++++.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999999999987 677777775554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-08 Score=94.44 Aligned_cols=255 Identities=13% Similarity=0.035 Sum_probs=197.5
Q ss_pred HHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007288 286 IIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364 (609)
Q Consensus 286 li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (609)
-..-+...+ +.+..++++...+.. ++....+..=|..+...|+..+-..+-..+++.- |....+|-++.--|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence 334455556 888999998887752 3444455555667777777776666666676653 5567788888888888999
Q ss_pred HHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 365 ISDSQKIFSEMSDRD---LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 365 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.++|.+.|.+...-| ...|-.+...|+-.|..+.|+..+...-+. ++-....+--+.--|...++.+-|.++|...
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999887433 358999999999999999999999888763 1111122333445578899999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP--------FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
.... +-|+.+++-+.-.....+.+.+|...|+..- ..+ -..+++.|..+|++.+.+++|+..+++++.+.
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6543 3467778888777778899999999987761 111 34567788899999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 513 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
|.+..++..++-.|...|+++.|+..|.+..-
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-08 Score=89.26 Aligned_cols=268 Identities=10% Similarity=0.023 Sum_probs=172.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHH
Q 007288 246 GSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWN---TIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSII 321 (609)
Q Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll 321 (609)
+-|+.....+.+++...|+.++|...|++...-|+.+.. .....+.+.| .+....+...+.... .-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 445555556666666666666666666655433222111 1111223344 444444444444321 11222232223
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~ 398 (609)
...-...+++.|..+-.+.++.+ +.+...+-.-..++...|+.++|.-.|+... .| +...|..|+.+|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33344566666766666665543 2233334444566677888888888888766 33 67889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVL-TACSH-AGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
|.-+-+...+. +.-+..+...+. ..|.. ..--++|..+++...+. .|+ ....+.+...+...|..++++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 88887776653 344555665553 33332 33457888888877553 344 45667788899999999999999988
Q ss_pred C-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 476 M-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 476 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
. ...||....+.|.+.+...+.+++|...|..++.++|++..+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 7 667899999999999999999999999999999999976443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=81.15 Aligned_cols=50 Identities=32% Similarity=0.646 Sum_probs=42.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007288 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH 427 (609)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 427 (609)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-07 Score=90.27 Aligned_cols=128 Identities=17% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhC
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEH 495 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 495 (609)
|......+.+.+..++|...+.+..+.. +.....|......+...|++++|.+.|... .+.|+ +.+..++...+.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4455566778888889988888885533 446677777778888999999999988776 66775 56778888999999
Q ss_pred CChHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 496 RLPNLGKL--AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 496 ~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|+...|.. ++..+++++|.++..|..++..+.+.|+.++|.+.|+...+..
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99888888 9999999999999999999999999999999999999988753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-07 Score=83.73 Aligned_cols=445 Identities=10% Similarity=0.020 Sum_probs=262.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 007288 84 IAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163 (609)
Q Consensus 84 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 163 (609)
+.-+....++..|+.+++.-...+-+-...+-.-+..++...|++++|...+..+.+ .-.++...+..|...+.-.| .
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg-~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLG-Q 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHH-H
Confidence 566677888999999888766443322222223344556788999999999988776 34556677777777777777 8
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
+.+|..+-...++ +...-..|+....+.++-++-..+-+.+.+. ...-.+|....-..-.+++|..++..+...
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888776643 2333344455555667766666555555432 112223333333444577888888887765
Q ss_pred CCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHH
Q 007288 244 GFGSNLPVMNS-ILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFT 318 (609)
Q Consensus 244 g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~ 318 (609)
+ |+-...|. +.-+|.+..-++-+.++++-..+ | +...-|.......+.- ...|.+-.+.+.+.+-.. |-
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~ 254 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP 254 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch
Confidence 3 33333332 33456677666666666554432 2 3334444333333322 233333333333322110 11
Q ss_pred HHHHHHHh-----hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007288 319 SIIAACAT-----LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393 (609)
Q Consensus 319 ~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 393 (609)
.+.-+++ -.+-+.|.+++--+.+. -|. .--.|+--|.+.+++.+|..+..++...++.-|-.-...++..
T Consensus 255 -f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 255 -FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAAL 329 (557)
T ss_pred -hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHh
Confidence 1112222 12445566665544432 122 2233555688999999999999988754444443322333333
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 394 GH-------GKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 394 g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
|+ ..-|.+.|+-.-+++..-|.. --.++..++.-...+++.+.+++.....=...|...+| +..+++..|.
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgn 408 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGN 408 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcC
Confidence 33 333444444433333332221 11223333444456888888888887655555555555 7889999999
Q ss_pred HHHHHHHHHhCC--CCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 466 VKEAYELIKSMP--FKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 466 ~~~A~~~~~~~~--~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
+.+|.++|-++. .-.|..+|.+++ ++|.+.+..+.|..++-+...-. ........+++-|.+++.+=-|.+.|+.+
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~-e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS-ERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999998883 124667777776 78889999999987765432211 23455667889999999999999999999
Q ss_pred HhCCCcc
Q 007288 543 RGMGSKK 549 (609)
Q Consensus 543 ~~~~~~~ 549 (609)
...++.|
T Consensus 488 E~lDP~p 494 (557)
T KOG3785|consen 488 EILDPTP 494 (557)
T ss_pred HccCCCc
Confidence 8765543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=98.33 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=171.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcch-HHHHHHHHHhcC
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVT-WTSMMIGYGAHG 394 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g 394 (609)
..+..+|.+.|.+..|+..++...+. .|-+.+|..|-.+|.+..+.+.|+.+|.+-.+ |..+| ...+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 44556666677777777766665554 34455566677777777777777777777664 33333 334555666778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
+.++|.++|+...+.. ..+......+...|.-.++++-|+.+++++...|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888887752 345556666777777788888888888888888865 77888888888888888888887777
Q ss_pred hC---CCCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 475 SM---PFKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 475 ~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+. -.+| -..+|..|.......|++..|.+.|+.++..+|++...++.|+-.-.+.|+.++|..+++......+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 66 1223 3567888888888999999999999999999999999999999999999999999999999887544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-06 Score=84.47 Aligned_cols=425 Identities=12% Similarity=0.085 Sum_probs=268.8
Q ss_pred chHHHHHHHhhCCCChHHHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHh
Q 007288 113 FTLSSVLKACKGMKSLSNAALVHGMAIKE-GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAH 191 (609)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 191 (609)
..|...+..+...+++...+..|+..+.. -+.....+|...+......+ -++-+..++++..+-++..-+-.|..+++
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45666666777888888888888877665 33445567888888877777 88888888888877777778888888888
Q ss_pred cCChhhHHHHHHHHHHCC------CCCCHhhHHHHHHHHHccCCch---hHHHHHHHHHHhCCCCC--hhHHHHHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEG------VEMNPYSFSIAVRACASTGWVS---FGKLIHAAVIKHGFGSN--LPVMNSILDMYC 260 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~ 260 (609)
.+++++|-+.+....... .+.+..-|..+-...++..+.- ....+++.+... -+| ...|.+|.+.|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 999998888887765421 2334444555444444443322 233444443332 223 357888999999
Q ss_pred hcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhCC-----------------c------hHHHHHHHHhHHCCC-----
Q 007288 261 RFDCLSDANQYFDEMTEK--DLITWNTIIAGYEKSG-----------------S------SECLNMFSKMKSERF----- 310 (609)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~-----------------~------~~a~~~~~~m~~~~~----- 310 (609)
+.|.+++|.++|++.... .+.-|..+.++|+.-. . +-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 999999999998876542 2222333333332211 0 112233333333210
Q ss_pred ------CCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007288 311 ------SPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG------NLALANALIDMYAKCGNISDSQKIFSEMSDR 378 (609)
Q Consensus 311 ------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (609)
+-+..+|..-. -...|+..+....+.++++. +.| -...+..+...|-..|+++.|..+|++..+-
T Consensus 340 VlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 01112222111 12345666677777777653 122 2346778889999999999999999999874
Q ss_pred Ccc-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHhccCCHHHH
Q 007288 379 DLV-------TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-----------------DRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 379 ~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------------~~~~~~~ll~~~~~~~~~~~a 434 (609)
+-. +|..-...=.++.+++.|++++++.....-.| +...|...+..-...|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 433 34444444457788999999988876432111 223455666666677888999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CC-CC-HhhHHHHHHHHH---hCCChHHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FK-PD-ESVWGPLLGACK---EHRLPNLGKLAALR 507 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~-p~-~~~~~~l~~~~~---~~~~~~~a~~~~~~ 507 (609)
..+++++.+..+. ++.+.-.....+-....++++.+++++- + ++ |+ ...|+..+.-+. .....+.|..+|++
T Consensus 497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999776654 3333333444556778899999999986 2 22 33 346776664332 23478999999999
Q ss_pred HhccCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 508 VLDLKPNMM--GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 508 ~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++.-|+.. ..|...+..=.+-|.-..|..++++...
T Consensus 576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999887322 2333344444456888899999988654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=106.16 Aligned_cols=258 Identities=12% Similarity=0.077 Sum_probs=182.9
Q ss_pred ChhHHHHHHHHHHh--C---C-chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHH---------hhccHHHHHHHHHHHHH
Q 007288 279 DLITWNTIIAGYEK--S---G-SSECLNMFSKMKSERFSPNC-FTFTSIIAACA---------TLAALSCGQQVHAGIVR 342 (609)
Q Consensus 279 ~~~~~~~li~~~~~--~---~-~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 342 (609)
+...|...+.+... . + .++|...|++..+. .|+. ..|..+..++. ..++.++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455555555321 1 1 57888899988864 4543 34444443332 23458899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 007288 343 RGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VF 418 (609)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~ 418 (609)
.+ +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 45677788888899999999999999999874 4 4467888889999999999999999999985 45432 33
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhH-HHHHHHHHhCC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVW-GPLLGACKEHR 496 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~ 496 (609)
..++..+...|++++|...++++.+...+-+...+..+..++...|++++|.+.+.++ +..|+.... +.+...+...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 3444456678999999999999865442334556777888999999999999999987 445554443 44445667666
Q ss_pred ChHHHHHHHHHHhc---cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 497 LPNLGKLAALRVLD---LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 497 ~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+.|...++.+.+ ..|.++. .+...|.-.|+-+.+..+ +++.+.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 477777777655 3443332 367777788888888777 88877654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-06 Score=84.37 Aligned_cols=487 Identities=11% Similarity=0.118 Sum_probs=272.1
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC-----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE-----RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (609)
+|-..++.+.++|++..-+..|+.... .....|...+.-....+-++-++.+|++..+- ++..-.-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 566677778889999999999887542 23456888898888899999999999999873 333466777888
Q ss_pred hCCCChHHHHHHHHHHHHhC------CCCCcchhhHHHHHHHhcCCCH---HHHHHHHccCCCC----ChhhHHHHHHHH
Q 007288 123 KGMKSLSNAALVHGMAIKEG------LEGSIYVENSLMDVYATCCISM---DNARLVFNDMKWK----NDVSWTTLITGY 189 (609)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~---~~A~~~~~~~~~~----~~~~~~~li~~~ 189 (609)
+..+++++|.+.+...+... .+.+-..|..+.+..++.- +. -....+++.+..+ -...|++|.+.|
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 89999999999888876542 2334556777766666543 21 1233444444332 346799999999
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----------------C------CchhHHHHHHHHHHhC---
Q 007288 190 AHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAST----------------G------WVSFGKLIHAAVIKHG--- 244 (609)
Q Consensus 190 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------g------~~~~a~~~~~~~~~~g--- 244 (609)
.+.|.+++|.++|++.+..-. +...|..+..+|+.- | +++-...-|+.+....
T Consensus 259 Ir~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 999999999999998876522 333344444443321 1 1122222333333221
Q ss_pred --------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHHhCC-chHHHHHHHHhH
Q 007288 245 --------FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---K------DLITWNTIIAGYEKSG-SSECLNMFSKMK 306 (609)
Q Consensus 245 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~-~~~a~~~~~~m~ 306 (609)
-+.++..|..-+. +..|+..+-...|.+... | -...|..+..-|-..| .+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 0112222222222 223445555555554422 1 1235777777777777 788888887766
Q ss_pred HCCCCCC---HHhHHHHHHHHHhhccHHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHHHHhcCCHH
Q 007288 307 SERFSPN---CFTFTSIIAACATLAALSCGQQVHAGIVRR-----------GLDG------NLALANALIDMYAKCGNIS 366 (609)
Q Consensus 307 ~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~g~~~ 366 (609)
+...+-- ..+|......-.+..+++.|..+.+..... +.++ +..+|...++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5432211 112222222233455666666666654321 1111 1223344444445566777
Q ss_pred HHHHHHHhcCCCCcchHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCCHHHHHHHHH
Q 007288 367 DSQKIFSEMSDRDLVTWTSMM---IGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSH---AGLVDEGLKYFK 439 (609)
Q Consensus 367 ~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---~~~~~~a~~~~~ 439 (609)
....+|+.+.+--+.|=..++ ..+-.+.-++++.++|++-+..=-.|+.. .|+..+..+.+ ...++.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 777777776642222211111 12234445666776666555432234443 55555544433 236777888888
Q ss_pred HhhhcCCCCChh--HHHHHHHHHhhcCCHHHHHHHHHhC--CCCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 440 SMNDYNVNPNKE--IYGCVVDLLGRAGRVKEAYELIKSM--PFKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 440 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
...+ |.+|... .|-.....=-+.|-...|++++++. +.++ -...|+..|.-....=-...-..+|+++++.-|
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP 653 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 8766 5444322 1222222223457777777777777 2222 123455555333322234445666777777666
Q ss_pred CC--cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 514 NM--MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 514 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
++ .......++.=.+.|..+.|..++..-.+
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 32 22333456666667777777777665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-08 Score=93.27 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=118.4
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
..+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|.+.++...+ .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344445555555666666666666555443 23344555566666666666666666665552 23345556666667
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
..|++++|.+.+++..+....| ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776532222 23355556666777777777777777775533 224556666777777777777777
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777665 2222 34455555566777777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-08 Score=97.26 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCC---C
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKS---GVRPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVN---P 448 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~ 448 (609)
++.+...+...+++++|..++++..+. -+.++. .+++.|...|.+.|++++|.++++++... +.. -
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 445556666777777777777665541 122222 37888888888888888888888887322 111 1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM--------PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
....++.|...|.+.+++.+|.++|.+. +..|+ ..+|..|..+|...|+++.|.++.+.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345677888888888888888877765 23344 46888899999999999999999888764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-09 Score=88.82 Aligned_cols=171 Identities=13% Similarity=0.149 Sum_probs=147.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
+...|..+|...|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+... -+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 4556778899999999999999999985 5655 4899999999999999999999999977553 3678899999999
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 461 GRAGRVKEAYELIKSMPFKP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
|..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999983333 35688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcccCceeEE
Q 007288 537 KFRKIMRGMGSKKEVGMSWI 556 (609)
Q Consensus 537 ~~~~~m~~~~~~~~~~~~~~ 556 (609)
.+++.....+. ......|.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred HHHHHHHhccc-ccHHHHHH
Confidence 99999988776 44444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-08 Score=105.66 Aligned_cols=227 Identities=10% Similarity=-0.029 Sum_probs=169.5
Q ss_pred CHHhHHHHHHHHH-----hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHHhcCC-
Q 007288 313 NCFTFTSIIAACA-----TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYA---------KCGNISDSQKIFSEMSD- 377 (609)
Q Consensus 313 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~- 377 (609)
+...|...+.+.. ..++.+.|...+++..+.. +.+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3344445555432 2345789999999988764 233455555655544 23458899999998874
Q ss_pred -C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 378 -R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 378 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
| +...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.+.. +...+.
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 3 5567888888899999999999999999985 455 457888888999999999999999999776533 223333
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM--PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.++..+...|++++|+..+++. ...|+.. .+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4455567789999999999887 2235444 45666678889999999999999998888877777888888888888
Q ss_pred hHHHHHHHHHHHhC
Q 007288 532 WEEFAKFRKIMRGM 545 (609)
Q Consensus 532 ~~~A~~~~~~m~~~ 545 (609)
+.|...++.+.+.
T Consensus 490 -~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 -ERALPTIREFLES 502 (553)
T ss_pred -HHHHHHHHHHHHH
Confidence 5888888887653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-08 Score=96.10 Aligned_cols=190 Identities=17% Similarity=0.126 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTAC 425 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 425 (609)
..|..+...|.+.|+.++|...|+...+ | +...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455556666777777777777766653 2 4466777777777777777777777777763 444 34666666777
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
...|++++|.+.++...+.+ |+..........+...+++++|.+.+.+. ...|+...| .+ .....|+...+ .
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~--~~~~lg~~~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NI--VEFYLGKISEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HH--HHHHccCCCHH-H
Confidence 77777777777777775543 33221222222334556777777777554 222222211 12 22223443332 1
Q ss_pred HHHHHh-------ccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 504 AALRVL-------DLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 504 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++.+. ++.|....+|..++..+.+.|++++|+..|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222222 34455566788888888888888888888888876544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-07 Score=91.21 Aligned_cols=282 Identities=12% Similarity=0.064 Sum_probs=142.3
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---
Q 007288 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPY-SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD--- 263 (609)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--- 263 (609)
.+...|++++|++.+++-... .+|.. .+......+.+.|+.++|..++..+++.+ +.|..-|..+..+.+-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 345567777777776554332 23333 33445555666777777777777777664 444445555555542222
Q ss_pred --CHHHHHHHHHhcCCC--ChhHHHHHHHHHHhCC--chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHH
Q 007288 264 --CLSDANQYFDEMTEK--DLITWNTIIAGYEKSG--SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVH 337 (609)
Q Consensus 264 --~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 337 (609)
+.+....+++++.+. .......+.-.+.... ...+...+..+...|+++ +|+.+-..|......+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 345555666655431 1111111111111111 234445556666667543 3334444444444444444444
Q ss_pred HHHHHh----C----------CCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCHHH
Q 007288 338 AGIVRR----G----------LDGNL--ALANALIDMYAKCGNISDSQKIFSEMSD--RD-LVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 338 ~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 398 (609)
...... + -+|+. .++.-+...|-..|++++|+.+++...+ |+ +..|..-...+-..|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 443322 1 11222 2334455556666666666666666553 32 2345555566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH--------HHHHHHHHhhcCCHHHHH
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI--------YGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~ 470 (609)
|.+.++..+... .-|...=+.....+.++|++++|.+++....+.+..|.... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666666666543 12334444455556666666666666666644343222111 123445666666666666
Q ss_pred HHHHhC
Q 007288 471 ELIKSM 476 (609)
Q Consensus 471 ~~~~~~ 476 (609)
..|..+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-06 Score=84.74 Aligned_cols=202 Identities=10% Similarity=0.041 Sum_probs=113.0
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCCC-----------CCc-ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMPE-----------RDV-VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT 114 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 114 (609)
.+|.++.+++.+..++|-|.-.+-.|.+ .|. ..=....-.....|..++|..+|++.++.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~-------- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY-------- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 4566666666666666666555555442 011 11111111123445566666666555542
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC------------------
Q 007288 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW------------------ 176 (609)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------------------ 176 (609)
..|=..|-..|.+++|.++.+.-.+-.+. .+|......+-..+ +.+.|++.|+....
T Consensus 830 -DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~-Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 -DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARR-DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhc-cHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 22233344556666666554432222221 23333334344444 77777777765432
Q ss_pred -----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH
Q 007288 177 -----KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251 (609)
Q Consensus 177 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 251 (609)
+|...|.-....+-..|+.+.|+.+|...++ |-++++..|-.|+.++|-++-++ .-|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHH
Confidence 2444555555555566777777777766543 45566677777888777777654 335666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
.-.|.+.|-..|++.+|..+|.+..
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888888888888888887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-06 Score=81.79 Aligned_cols=407 Identities=13% Similarity=0.150 Sum_probs=222.5
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHH
Q 007288 88 TSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNA 167 (609)
Q Consensus 88 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A 167 (609)
...|+-++|.+....-.+..+. +.+.|+.+.-.+....++++|.+.+...++.+.. |..++..+--.-++.| +++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmR-d~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMR-DYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHH-hhhhH
Confidence 4455666666665555543332 4444555555555555666666666666554432 4444544444444444 44444
Q ss_pred HHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHhhHHHHHH------HHHccCCchhHHHHH
Q 007288 168 RLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG-VEMNPYSFSIAVR------ACASTGWVSFGKLIH 237 (609)
Q Consensus 168 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~a~~~~ 237 (609)
...-....+ .....|-.+..++.-.|+...|..++++..+.. -.|+...|..... .....|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 333333222 244567778888888888888888888887654 2456655543322 245667777776666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHH-HHHHhCC-chHHH-HHHHHhHHC---C
Q 007288 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE--KDLITWNTII-AGYEKSG-SSECL-NMFSKMKSE---R 309 (609)
Q Consensus 238 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~-~~~a~-~~~~~m~~~---~ 309 (609)
..-... +......-..-...+.+.+++++|..++..+.. ||...|...+ .++.+-. ..+++ .+|....+. .
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 554332 122233334556677888888888888888865 3444444433 3443222 33333 455544332 1
Q ss_pred CCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcC---------
Q 007288 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS---D-SQKIFSEMS--------- 376 (609)
Q Consensus 310 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~-A~~~~~~~~--------- 376 (609)
-.|-... ++......-.+....++..+.+.|+++- +..+...|-.-...+ + +..+...+.
T Consensus 288 e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 288 ECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred ccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1111111 1111222333444455566666666542 233333332211111 1 111111111
Q ss_pred -----CCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 377 -----DRDLV--TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 377 -----~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
.|... ++..++..|-..|+++.|...++....+ .|+.. -|..=.+.+...|++++|..++++..+.+ .+
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TA 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch
Confidence 12333 3344667777888999999888888864 66654 55555677888889999998888887655 34
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHh--------hHHHHH--HHHHhCCChHHHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP-DES--------VWGPLL--GACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~--------~~~~l~--~~~~~~~~~~~a~~~~~~~ 508 (609)
|...-..-..-..++.+.++|.++.....-.- +.. .|-.+- .+|.+.|++..|+.-+..+
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 55554466677778888888888776651110 111 222222 5577777777776655554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-06 Score=86.07 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
..-.++|...++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 470 ~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 470 EDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 34568899999999999999999999999999999999998887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=91.81 Aligned_cols=227 Identities=10% Similarity=0.074 Sum_probs=150.0
Q ss_pred HHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007288 284 NTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC 362 (609)
Q Consensus 284 ~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (609)
+-+..+|.+.| ..+|.+.|+.-... .|-+.||..+-.+|.+..++..|..++.+-.+. .+-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34556666666 66666666655543 344556666666677777777777666665554 233444445566666667
Q ss_pred CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 363 GNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 363 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
++.++|.++|+...+ .++....++...|.-.++++.|+..|+++.+.|+. +...|+.+.-+|.-.+.++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777777664 24455555666677777888888888888877754 56677777777777777887777777
Q ss_pred HhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 440 SMNDYNVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 440 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+....-..|+ ..+|-.+.......|++..|.+-|+-. ... .+...++.|.-.-.+.|+++.|..++..+....|+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 7744333333 445666777777778888887777665 222 24566777777777788888888888877777774
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-06 Score=84.60 Aligned_cols=403 Identities=13% Similarity=0.038 Sum_probs=227.5
Q ss_pred CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC----C-hhhH
Q 007288 108 VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK----N-DVSW 182 (609)
Q Consensus 108 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~----~-~~~~ 182 (609)
+.-|...|..+.-++...|+++.+.+.|++....-+. ....|..+-..|..+| .--.|..+++.-..+ + ...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHH
Confidence 4446666666666777777777777777776654332 4556667777777776 666777776654322 1 2222
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHHC--CCC--CCHhhHHHHHHHHHc----cC-------CchhHHHHHHHHHHhCCC
Q 007288 183 TTLITGYAH-SGNGYGGLGVFKEMLLE--GVE--MNPYSFSIAVRACAS----TG-------WVSFGKLIHAAVIKHGFG 246 (609)
Q Consensus 183 ~~li~~~~~-~g~~~~a~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~----~g-------~~~~a~~~~~~~~~~g~~ 246 (609)
-..-..|.+ .+..+++++.-.+.... +.. ..+..|..+.-+|.. .. ...++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 222233333 25566666655555441 111 112223222222221 11 1234555666666654 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCC-chHHHHHHHHhHHC-CCCCCHHhHHHH
Q 007288 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTE----KDLITWNTIIAGYEKSG-SSECLNMFSKMKSE-RFSPNCFTFTSI 320 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~-~~~p~~~t~~~l 320 (609)
.|+.+.-.+.--|+..++++.|....++..+ .+...|..|.-.+...+ +.+|+.+.+..... |. |......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 3333333344456666777777776665433 46667777777777777 77777777665442 11 00000000
Q ss_pred HHHHHhhccHHHHHHHHHHHHH---------------------hCC-------CCchhHHHHHHHHHH---hcCCHHHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVR---------------------RGL-------DGNLALANALIDMYA---KCGNISDSQ 369 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~---~~g~~~~A~ 369 (609)
+..-...++.+.+......+.. .|. .....++..+..... +.-..+..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0111112222222221111110 010 011122222221111 111111111
Q ss_pred HHHHhcCCCCc------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 370 KIFSEMSDRDL------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 370 ~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
..+.....|+. ..|......+...++.++|...+.+..+. ..-....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11111112221 24556677788899999999888888764 233445777777888899999999999998866
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYE--LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.+. -++....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|.+.|..+.++++.+|.
T Consensus 713 ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 LDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 442 256788899999999998887777 77776 5555 6789999999999999999999999999998876553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-05 Score=79.51 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=118.9
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 364 NISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 364 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-.+++...++
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3344443333333 3457888999999999999998877543 3667899999999999999999999988877
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
..-.|.+.+ .|+-+|++.++..+..+++. -|+........+-|...|.++.|+-+|. +..-|..|+
T Consensus 1162 k~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La 1227 (1666)
T KOG0985|consen 1162 KVREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLA 1227 (1666)
T ss_pred hhcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHH
Confidence 666666654 68999999999999888774 4788888888888999999999988876 345577777
Q ss_pred HHHHhcCChHHHHHHHHH
Q 007288 524 NIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~ 541 (609)
..+...|.|..|...-++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 777777777766654333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-06 Score=77.51 Aligned_cols=286 Identities=14% Similarity=0.143 Sum_probs=171.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhCC-chHHHHHHHHhHHCCCCCCHHhHH-HHHHHHHhhcc
Q 007288 255 ILDMYCRFDCLSDANQYFDEMTEKDLITWNTII---AGYEKSG-SSECLNMFSKMKSERFSPNCFTFT-SIIAACATLAA 329 (609)
Q Consensus 255 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~ 329 (609)
+...+...|++..|+.-|....+-|+..|.++. ..|...| ..-|+.-+...++ ++||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 444455556666666666666655555554443 2355555 5555555555544 345533211 12233456666
Q ss_pred HHHHHHHHHHHHHhCCCCch--------------hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 007288 330 LSCGQQVHAGIVRRGLDGNL--------------ALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGA 392 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 392 (609)
++.|..=|+.+.++...... ......+..+.-.|+...|+.....+.+ -|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 66666666666554321110 0111223334556777777777777664 355666667777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH----HHHH---H------HH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI----YGCV---V------DL 459 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---~------~~ 459 (609)
.|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...++..+.+ ||... |..| . ..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888877666665532 2344455555666677777777777777776533 44221 2111 1 22
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 460 LGRAGRVKEAYELIKSM-PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
....++|.++++..+.. ...|. ...+..+-.++...+++.+|++...+++.++|+|..++..-+.+|.-...|+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 34556677776666555 44444 1233344467778888888988888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 007288 534 EFAKFRKIMRGM 545 (609)
Q Consensus 534 ~A~~~~~~m~~~ 545 (609)
+|+.-|++..+.
T Consensus 359 ~AI~dye~A~e~ 370 (504)
T KOG0624|consen 359 DAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhc
Confidence 888888887764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-05 Score=80.82 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=30.1
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC
Q 007288 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK 177 (609)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~ 177 (609)
+.|..|.+.|.+..|...... ...+..|..+...+..++.+.. -+++|-.+|+.+..+
T Consensus 620 aaiqlyika~~p~~a~~~a~n--~~~l~~de~il~~ia~alik~e-lydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALN--DEELLADEEILEHIAAALIKGE-LYDKAGDLFEKIHDF 677 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcC--HHHhhccHHHHHHHHHHHHhhH-HHHhhhhHHHHhhCH
Confidence 456677788877666543211 1112234444444555555544 556666666665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-05 Score=75.81 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=11.7
Q ss_pred HHccCCchhHHHHHHHHHHhC
Q 007288 224 CASTGWVSFGKLIHAAVIKHG 244 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g 244 (609)
+-..|+.++|.+++...++..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc
Confidence 344556666666665555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.8e-06 Score=81.15 Aligned_cols=191 Identities=15% Similarity=0.219 Sum_probs=109.4
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (609)
.+......+.+|..+++.++... .-...|..+.+-|...|+++.|+++|.+.- .++-.|..|.+.|+++.|.+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 33445566777777777776553 233456667777777888888887776543 34556677777888877777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 481 (609)
+-.+.. |.......|..-..-+-+.|++.+|.+++-.. | .|+. -|.+|-+.|..+..+++..+..-..-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 665542 23333445555555566677777776665322 2 2332 34566667777777766666521112
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
..|...+..-+...|+.+.|++.|-++- -|...+++|...+.|++|.++
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHH
Confidence 2344445555666666666665554432 233444455555555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-05 Score=82.14 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
....|+.+..+-.+.+ ..+|++.|-+. -|+..|..++..+.+.|.+++-..++....+..-.|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3457888888888888 88888777543 367788999999999999999998888888776666554 57888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
+|++.+++.+.++++ ..||......+.+-|...|.++.|.-+|.
T Consensus 1175 AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 899998888776654 23555555555555555555555554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-06 Score=83.26 Aligned_cols=216 Identities=9% Similarity=-0.043 Sum_probs=146.2
Q ss_pred chHHHHHHHHhHHCC-CCCC--HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 295 SSECLNMFSKMKSER-FSPN--CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
.+.++.-+.+++... ..|+ ...|......+...|+.+.|...|.+..+.. +.+...|+.+...+...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344555555555421 2222 2446666667778888888888888887765 44677888899999999999999999
Q ss_pred HHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 372 FSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 372 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
|+...+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...+++++|...+.+..... .+
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~ 197 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DK 197 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc
Confidence 998864 4 4567888888899999999999999999884 4554322222223455678999999997764322 33
Q ss_pred ChhHHHHHHHHHhhcCCHH--HHHHHHHhC-CCC----C-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 449 NKEIYGCVVDLLGRAGRVK--EAYELIKSM-PFK----P-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
+...+ .+... ..|+.. ++++.+.+. ... | ....|..+...+.+.|++++|...|+++++.+|.+..
T Consensus 198 ~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 198 EQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred cccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33222 23333 344443 333333322 111 1 2357888889999999999999999999999985443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.7e-05 Score=70.50 Aligned_cols=263 Identities=7% Similarity=-0.062 Sum_probs=182.2
Q ss_pred CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhH-HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 007288 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF-TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANAL 355 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (609)
.|+.....+...+...| ..+|...|++.... .|+..+- -.-.-.+...|+.+....+...+.... .-+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 36777888888899999 99999999887653 3443321 111112346677777777766665432 1122222223
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRD---LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 431 (609)
........+++.|+.+-++..+.+ +..|-.-...+...|++++|.-.|+..+. +.| +..+|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 334455678888888888877543 34444444667888999999999998887 454 456999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVV-DLLG-RAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
.+|...-+...+. ++.+..+...+. ..+. ...--++|..++++. .++|+- ...+.+...|...|..+.++.++++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9998887776331 234555555442 2222 233457788888876 677764 3455666889999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 508 VLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 508 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+...| |......|++.+...+.+.+|...|......++
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999998 578889999999999999999999888876433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-06 Score=82.78 Aligned_cols=373 Identities=13% Similarity=0.098 Sum_probs=229.0
Q ss_pred HHHHhcCCCHHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCc
Q 007288 155 DVYATCCISMDNARLVFNDMK---WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN-PYSFSIAVRACASTGWV 230 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~ 230 (609)
.+.+..| +++.|...|-+.. .+|.+.|..=..+|+..|++++|++--.+-++. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~-d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSG-DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred Hhhcccc-cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3455677 9999999997643 347778888889999999999998877776654 566 45788888889999999
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHH------hcCC-C------ChhHHHHHHHHHHhCC---
Q 007288 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD------EMTE-K------DLITWNTIIAGYEKSG--- 294 (609)
Q Consensus 231 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~-~------~~~~~~~li~~~~~~~--- 294 (609)
++|..-|.+-++.. +.+...++.+..++... . .+...|. .+.. | ....|..++..+-+..
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999888875 66777888888877211 0 1111111 1100 0 1122333333322211
Q ss_pred --------chHHHHHHHH-----hHHCC-------CCC------------C----------HHhHHHHHHHHHhhccHHH
Q 007288 295 --------SSECLNMFSK-----MKSER-------FSP------------N----------CFTFTSIIAACATLAALSC 332 (609)
Q Consensus 295 --------~~~a~~~~~~-----m~~~~-------~~p------------~----------~~t~~~ll~~~~~~~~~~~ 332 (609)
...+.-.+.. +...| ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 1111111100 00001 111 0 1123455566666677777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---chHHH-------HHHHHHhcCCHHHHHHH
Q 007288 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDL---VTWTS-------MMIGYGAHGHGKEAIEL 402 (609)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-------li~~~~~~g~~~~A~~~ 402 (609)
+.+-+....... .+..-++....+|...|.+..+...-....+... .-|+. +..+|.+.++++.|+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 777777776655 5555666777777777777776655554433211 11222 33355666777888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007288 403 FDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP- 480 (609)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 480 (609)
|++.......|+.. .+....+++........-.+... ..-...-...+.+.|++..|+..|.++ ...|
T Consensus 321 ~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 321 YQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 87766654444322 12223334444333332222211 111122256667888888888888877 3445
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|...|..-.-+|.+.+.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++-.+.+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777777888888888888888888888888888888888888888888888888888777654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-06 Score=74.98 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhc
Q 007288 317 FTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAH 393 (609)
Q Consensus 317 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 393 (609)
...+.-.|...|+...|..-+++.+++. +.+..++..+...|.+.|+.+.|.+.|+...+ .+....|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3444555666667777777666666654 33455566666667777777777777766653 2445566666666777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
|++++|...|++......-|.. .||..+.-+..+.|+.+.|...|++..+.... .......+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 7777777777777664333322 36666666666777777777777776554422 334455566666677777777776
Q ss_pred HHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 473 IKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 473 ~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
++.. ...++..+....|......|+.+.+.+.-.++....|.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 6665 22355555555566666777777776666666666664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.1e-06 Score=83.18 Aligned_cols=382 Identities=14% Similarity=0.107 Sum_probs=229.4
Q ss_pred ChhHHhHHHH--HHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC-C--------CCCCcc
Q 007288 45 PSILATNLIK--SYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRN-E--------VNPNAF 113 (609)
Q Consensus 45 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~ 113 (609)
|..+-.++++ .|..-|+.|.|.+-.+.+. +-..|..|.+.+++.++.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4555666664 5667799998887766654 3456999999999999999888887777531 1 1222 2
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-ChhhHHHHHHHHHhc
Q 007288 114 TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-NDVSWTTLITGYAHS 192 (609)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 192 (609)
+=.-+.-.....|.+++|..++.+..+.. .|=..|...| .+++|.++-+.-..- -..+|......+-..
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g-~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQG-MWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcc-cHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22223333467789999999999887643 3455666777 999999887654432 223455556666667
Q ss_pred CChhhHHHHHHHH----------HHCC---------CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHH
Q 007288 193 GNGYGGLGVFKEM----------LLEG---------VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMN 253 (609)
Q Consensus 193 g~~~~a~~~~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 253 (609)
++.+.|++.|++. .... -.-|..-|.....-+-..|+.+.|+.+|..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888877652 1111 112444445555555667777777777776554 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHH-------
Q 007288 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACA------- 325 (609)
Q Consensus 254 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~------- 325 (609)
++++..|-.|+.++|-.+-++-. |......|.+.|-..| ..+|..+|.+... |...|+.|-
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 56677777788888877766543 5566667788888888 8888888876542 233333221
Q ss_pred ------h--hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------CCcchH
Q 007288 326 ------T--LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--------------RDLVTW 383 (609)
Q Consensus 326 ------~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~ 383 (609)
. ..+.-.|-.+|++. |. ....-+..|-+.|.+.+|+++--+-.+ .|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1 11222333333332 11 112344567777777777665322221 345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCC----hhHHHHHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPN----KEIYGCVVD 458 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~----~~~~~~l~~ 458 (609)
+.-..-|..+.++++|..++-..++ |...+.. |+..++.-..++-+.| ...+-.|+ ..+...+.+
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 6666667777888888877766544 2223332 3333344444444444 22212233 234556667
Q ss_pred HHhhcCCHHHHHHHHHhCC
Q 007288 459 LLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~ 477 (609)
.|.+.|.+..|-+-|.+.|
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHhccchHHHHHHHhhhh
Confidence 7777787777777776665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-05 Score=77.46 Aligned_cols=422 Identities=10% Similarity=-0.014 Sum_probs=234.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHh
Q 007288 115 LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAH 191 (609)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 191 (609)
|..++.. ...+.+....+..+.+++.-.+ -..+.....-.+...| +-++|......-.. .+.+.|+.+.-.+-.
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3444443 3456777777777777763222 2233332223334445 77777777665543 356778887777777
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007288 192 SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 192 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
..++++|++.|......+. -|...+.-+--.-++.|+++..........+.. +.....|..+..++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888776532 245555555555566677776666666665542 33455666677777777777777777
Q ss_pred HHhcCC-----CChhHHHHHHH------HHHhCC-chHHHHHHHHhHHCCCCCCHHhH-HHHHHHHHhhccHHHHHHHHH
Q 007288 272 FDEMTE-----KDLITWNTIIA------GYEKSG-SSECLNMFSKMKSERFSPNCFTF-TSIIAACATLAALSCGQQVHA 338 (609)
Q Consensus 272 ~~~~~~-----~~~~~~~~li~------~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~ 338 (609)
.+...+ ++...+..... .....| .++|++.+..-... ..|...+ .+-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 666542 23333332222 233444 45555554433221 1222222 233344566677777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-Cc-chHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 007288 339 GIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDR-DL-VTWTSMMIGYGA-HGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~-~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
.+.... +.+...|-.+..++.+ .+..+....+|....+. .. ..-..+--.... ..-.+..-+++..+.+.|+++-
T Consensus 244 ~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 244 RLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 776653 2233333334444432 22222222555544421 10 000001011111 1222334455666667776543
Q ss_pred HHHHHHHHHHHhccCCHHH----HHHHHHHhhhcCC----------CCChhH--HHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007288 415 RIVFMAVLTACSHAGLVDE----GLKYFKSMNDYNV----------NPNKEI--YGCVVDLLGRAGRVKEAYELIKSM-P 477 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~----------~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~ 477 (609)
-..+.++ |-.....+- +..+...+...|. +|.... +-.++..+-+.|+++.|...++.. +
T Consensus 323 f~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333333 322222111 1122222211111 344433 345777888999999999999887 5
Q ss_pred CCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 478 FKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 478 ~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..|+.+ .|..-.+.+...|+.++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 556543 3333347788889999999999999998876655444677777888999999999988887665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-06 Score=76.19 Aligned_cols=336 Identities=12% Similarity=0.043 Sum_probs=176.4
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 188 GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA--CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
.+.+.+.+..|+.+...|.+. |+...-..-+.+ .-+.+++..+..+.++....| +..+.+.......+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 344556666666666665442 121111111111 234556666666655543222 334444445555666777
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHh-HH---HHHHHHHhhccHHHHHHHH
Q 007288 266 SDANQYFDEMTE----KDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFT-FT---SIIAACATLAALSCGQQVH 337 (609)
Q Consensus 266 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~---~ll~~~~~~~~~~~a~~~~ 337 (609)
+.|.+-|+...+ .....||.-+..|.+.....|++...+++++|++-.+.. .. -.+.+ ...|+. ..
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~-- 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV-- 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH--
Confidence 777776666554 244566666666655557777777777766664321110 00 00000 000000 00
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007288 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 412 (609)
|..++ -+..+|.-...+.+.|+++.|.+.+..|.. -|++|...+.-.- ..+++.+..+-++-+.....
T Consensus 235 --lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP- 307 (459)
T KOG4340|consen 235 --LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP- 307 (459)
T ss_pred --HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-
Confidence 00000 012234444556788999999999999983 3666666554322 23445555555555555422
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHhhHHHHH-
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLG-RAGRVKEAYELIKSMPFKPDESVWGPLL- 489 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~- 489 (609)
-...||..++-.||+..-++-|-.++-+-...-+ -.+...|+ |++++. ..-.+++|.+-++.+...-....-...+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~ 386 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQ 386 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999999888866422111 12344454 344444 3456777777666551110111111111
Q ss_pred -HHHHhCCCh---HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 490 -GACKEHRLP---NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 490 -~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.--...++- ..+.+-+++.+++.- .....-++.|+...++.-+.++|..-.+-.
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 111222221 233344444444332 355667888899999999999998887643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=91.77 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=170.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHH
Q 007288 325 ATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 401 (609)
.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |....-.|...|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56778888888888887765 556777888888888888888888888888753 45566677778888888889999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 402 LFDEMVKSGVR--------PDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 402 ~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
.++.-+....+ ++...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|.+++|+..
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887653211 00000000 1222233345556666666 6666668899999999999999999999999
Q ss_pred HHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 473 IKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 473 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
|+.. ..+| |...||.|...+....+.++|+..|.+++++.|.-......|+-.|...|.|++|.+.|-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 6677 67799999999999999999999999999999999999999999999999999999998777653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-05 Score=71.65 Aligned_cols=317 Identities=10% Similarity=0.064 Sum_probs=206.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHH---HHHHccCCchhHHHHHHHHHHhCCCCChh-HHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV---RACASTGWVSFGKLIHAAVIKHGFGSNLP-VMN 253 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~ 253 (609)
++.-.--+...+...|++..|+.-|...++. |+..|..+. ..|...|+..-|..-+..+++. .||-. ..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444556777788888999999888888664 444454443 4567788888888878777765 55532 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHH
Q 007288 254 SILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCG 333 (609)
Q Consensus 254 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 333 (609)
.-...+.+.|.++.|..-|+.+.+.++. -+....++.+.. ..+++ ......+..+...|+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~------~~~e~---------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLA------LIQEH---------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHH------hHHHH---------HHHHHHHHHHhcCCchhhH
Confidence 3345677888999998888887653221 000111111111 00111 1122233344556777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007288 334 QQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (609)
+.....+.+.. +.|...+..-..+|...|++..|+.=++... ..+..++..+-..+...|+.+.++...++-++
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 77777776653 5677777777888888888888876665544 34556666666777777888888887777776
Q ss_pred CCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHH
Q 007288 411 VRPDRIV----FMAV---------LTACSHAGLVDEGLKYFKSMNDYNVNPN---KEIYGCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 411 ~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
+.||... |..| +......++|.++++..+...+...... ...+..+-.++...|++.+|++...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4666531 1111 1123446778888888887766543322 3344556677888999999999998
Q ss_pred hC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 475 SM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 475 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
+. .+.|| ..++---..+|.-...++.|+.-|+++.+.+|++...-
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 87 66676 55666666889999999999999999999999775543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-07 Score=85.56 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=82.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hcCC
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG----RAGR 465 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~ 465 (609)
+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++. -.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 34456666665555431 234445555566666666666666666665432 22 22222333222 2235
Q ss_pred HHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHH
Q 007288 466 VKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW-EEFAKFRKIM 542 (609)
Q Consensus 466 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 542 (609)
+.+|..+|+++ ...++..+.+.+..++...|++++|...++++++.+|+++.+...++-+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66677777666 23355566666666777777777777777777777777777777777777777776 5566666666
Q ss_pred Hh
Q 007288 543 RG 544 (609)
Q Consensus 543 ~~ 544 (609)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-06 Score=78.75 Aligned_cols=440 Identities=13% Similarity=0.046 Sum_probs=225.7
Q ss_pred HHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHhhCCCCh
Q 007288 53 IKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA-FTLSSVLKACKGMKSL 128 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 128 (609)
-++....|+++.|+..|.+... +|-+.|..-..+|+..|++.+|++=-.+-++ +.|+- ..|+..-.++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3456678999999999987653 5667788888889999999988876666665 45654 4688888888888999
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHH-----HHHHHhcCChhhHHHHHH
Q 007288 129 SNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTL-----ITGYAHSGNGYGGLGVFK 203 (609)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~ 203 (609)
++|..-|..-++.... +...++.|..++.. + ..+.+.|. +...|..+ .+.+...-.+..-++.+.
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~---~-~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLE---D-YAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH---H-HHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 9998888777665432 44455556655511 1 11111111 11111111 111111111111111111
Q ss_pred HHHH-CCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCC-HHHHHHHHHhcCCC
Q 007288 204 EMLL-EGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLP---VMNSILDMYCRFDC-LSDANQYFDEMTEK 278 (609)
Q Consensus 204 ~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 278 (609)
.-.. .+...+ ...++.+.......+.- .....|..+... --.......-..++ .++... ..
T Consensus 157 ~~p~~l~~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~------k~ 222 (539)
T KOG0548|consen 157 KNPTSLKLYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV------KE 222 (539)
T ss_pred cCcHhhhcccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHHH------HH
Confidence 0000 000000 00111111110000000 000000000000 00000000000000 000000 00
Q ss_pred ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC------chhH
Q 007288 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG------NLAL 351 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 351 (609)
.......+.++..+.. +..|++-+....+.. -+..-++..-.++...|........-....+.|-.. -...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 0112233444444444 556666665555432 222223334444555555555544444444333110 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGL 430 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~ 430 (609)
+..+..+|.+.++++.|...|++...+... -....+....++++.......- +.|... -...=...+.+.|+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 222445677778888888888886532111 1122333445555555554443 333332 12222556778899
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+..|+..|.++++.. +-|...|....-+|.+.|.+..|+.=.+.. ...|+ ...|..-..++....+++.|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997766 457888888889999999999988876665 34454 345555556677778899999999999
Q ss_pred hccCCCCcchHHHHHHHHHh
Q 007288 509 LDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 509 ~~~~p~~~~~~~~l~~~~~~ 528 (609)
++.+|++......+.+++..
T Consensus 453 le~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhcCchhHHHHHHHHHHHHH
Confidence 99999777666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=71.66 Aligned_cols=283 Identities=10% Similarity=0.049 Sum_probs=184.8
Q ss_pred HhHHHHHHHccCChhHHHHhhccCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHH-HHHhhC
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMPER---DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSV-LKACKG 124 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 124 (609)
+++++..+.+..++++|++++....+. +......+...|....++..|-+.|+++-.. .|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 567777788899999999999877653 4556777777888899999999999999874 4555555432 344567
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcchhhHHHHHH--HhcCCCHHHHHHHHccCC-CCChhhHHHHHHHHHhcCChhhHHHH
Q 007288 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVY--ATCCISMDNARLVFNDMK-WKNDVSWTTLITGYAHSGNGYGGLGV 201 (609)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 201 (609)
.+.+..|..+...|... ++...-..-+.+. -..+ ++..+..+.++.+ +.+..+.+.......+.|+++.|++-
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~-Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEG-DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccc-cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 77888888888777542 2222211222222 2345 8888999999988 46777777777777899999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC-------------Chh---------------HHH
Q 007288 202 FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS-------------NLP---------------VMN 253 (609)
Q Consensus 202 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-------------~~~---------------~~~ 253 (609)
|+...+-|--.....|+..+.. .+.|+.+.|.+...+++++|+.. |+. .+|
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9999876544466778776654 46789999999999999987532 211 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc
Q 007288 254 SILDMYCRFDCLSDANQYFDEMTEK-----DLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328 (609)
Q Consensus 254 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 328 (609)
.-...+.+.|+++.|.+.+..|+-+ |++|...+.-.-....+.+..+-+.-+.+... -...||..++-.||+..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 2223445667778888777777642 44544333222222222222232333333221 23456777777777777
Q ss_pred cHHHHHHHHHH
Q 007288 329 ALSCGQQVHAG 339 (609)
Q Consensus 329 ~~~~a~~~~~~ 339 (609)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 77766666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00059 Score=77.16 Aligned_cols=432 Identities=9% Similarity=-0.033 Sum_probs=227.5
Q ss_pred hhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCC--C-C----cchHHHHHHHhhCC----CChHH
Q 007288 62 IEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVN--P-N----AFTLSSVLKACKGM----KSLSN 130 (609)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----~~~~~ 130 (609)
.++..+++..+.-.+..+ -.+...... ...+.++++.+.+.|.- + + ...|+.++..+.+. ...++
T Consensus 264 ~~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~ 339 (903)
T PRK04841 264 DLETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQE 339 (903)
T ss_pred CHHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchH
Confidence 345555555443222222 233344333 33456677777766641 1 1 24566666554322 12223
Q ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhh--HHHHHHHHHhcCChhhHHHHHHHHHHC
Q 007288 131 AALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVS--WTTLITGYAHSGNGYGGLGVFKEMLLE 208 (609)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 208 (609)
...++. .....+...| ++.+|.............. ...........|++..+...++.+...
T Consensus 340 ~~~lh~---------------raa~~~~~~g-~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~ 403 (903)
T PRK04841 340 LPELHR---------------AAAEAWLAQG-FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE 403 (903)
T ss_pred HHHHHH---------------HHHHHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH
Confidence 333322 2233345555 6666666665554332111 111223344567777766666654221
Q ss_pred CCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 007288 209 GVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG------SN--LPVMNSILDMYCRFDCLSDANQYFDEMTE--- 277 (609)
Q Consensus 209 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 277 (609)
....+..........+...|+++++...+......--. +. ......+...+...|++++|...+++..+
T Consensus 404 ~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 483 (903)
T PRK04841 404 VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP 483 (903)
T ss_pred HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 11112222233344456778888888888776543111 11 11222334455678888888888776532
Q ss_pred -CCh----hHHHHHHHHHHhCC-chHHHHHHHHhHHCCC---CC--CHHhHHHHHHHHHhhccHHHHHHHHHHHHHh---
Q 007288 278 -KDL----ITWNTIIAGYEKSG-SSECLNMFSKMKSERF---SP--NCFTFTSIIAACATLAALSCGQQVHAGIVRR--- 343 (609)
Q Consensus 278 -~~~----~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 343 (609)
.+. ...+.+...+...| .++|...+.+.....- .+ ...++..+...+...|+++.|...+.+....
T Consensus 484 ~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 484 LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 121 23445555566677 8888877777654210 11 1223444555667788888888887765542
Q ss_pred -CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 007288 344 -GLD--G-NLALANALIDMYAKCGNISDSQKIFSEMSD------R--DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG- 410 (609)
Q Consensus 344 -~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 410 (609)
+.. + ....+..+...+...|++++|...+++... + ....+..+...+...|++++|...+.+.....
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 211 1 122344555666777888888877776542 1 12233345556677888888888877775421
Q ss_pred -CCCCHH--HH--HHHHHHHhccCCHHHHHHHHHHhhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC------
Q 007288 411 -VRPDRI--VF--MAVLTACSHAGLVDEGLKYFKSMNDYNVNPN---KEIYGCVVDLLGRAGRVKEAYELIKSM------ 476 (609)
Q Consensus 411 -~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 476 (609)
...... .. ...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++.
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 111100 00 1112334456778888887766533111111 111345566777788888887777765
Q ss_pred -CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 477 -PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 477 -~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+..++ ..+...+..++...|+.++|...+.+++++..
T Consensus 724 ~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 724 LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 22111 22344444667788888888888888877544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=82.00 Aligned_cols=154 Identities=13% Similarity=0.133 Sum_probs=103.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLV 431 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~ 431 (609)
..++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence 34456677888887777665 45556666778888888888888888888763 333 334444444432 2368
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh-HHHHHHHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP-NLGKLAALRV 508 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 508 (609)
.+|..+|+++.+ .+.+++.+.+.+..+....|++++|.+++.+. ...| +..+...++-+....|+. +.+.+.+.++
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888888744 34567788888888888888888888888775 3334 445666666666777766 6677788888
Q ss_pred hccCCCC
Q 007288 509 LDLKPNM 515 (609)
Q Consensus 509 ~~~~p~~ 515 (609)
....|+.
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 8888853
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-06 Score=79.81 Aligned_cols=182 Identities=11% Similarity=0.024 Sum_probs=115.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH-HHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD--RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR-PDR-IVFM 419 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~ 419 (609)
....+..+...+...|++++|...|+++.+ |+. .++..+..++...|++++|...++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445556667777777888888887777653 221 34566677777778888888888887764211 111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHhhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007288 420 AVLTACSHA--------GLVDEGLKYFKSMNDYNVNPNK-EIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLG 490 (609)
Q Consensus 420 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 490 (609)
.+..++... |++++|.+.++.+.+.. |+. ..+..+... +...... . .....+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM----DYLRNRL---A--------GKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH----HHHHHHH---H--------HHHHHHHH
Confidence 444444433 56777777777775433 222 222111111 0000000 0 01124556
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+.+.|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7889999999999999999987754 4688999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.9e-05 Score=79.08 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=73.2
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcchHHHHHHHhh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNE-VNPNAFTLSSVLKACK 123 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 123 (609)
.|+.|.+.|+..-+...|.+.|+..-+ .+..++......|++..+++.|..+.-.--+.. ...-...|...--.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 455566666655566666666655443 334455556666666666666665521111110 0000011111222234
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHH-H--HHHHHHhcCChhhHHH
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWT-T--LITGYAHSGNGYGGLG 200 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~-~--li~~~~~~g~~~~a~~ 200 (609)
..++...+..-|+...+..+. |...|..+..+|..+| ++..|.++|.+...-++.++- . .....+..|.+++|+.
T Consensus 574 ea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred CccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 445555555555555544333 4555666666666666 666666666554432222211 1 1122334455555555
Q ss_pred HHHHH
Q 007288 201 VFKEM 205 (609)
Q Consensus 201 ~~~~m 205 (609)
.+...
T Consensus 652 ~l~~i 656 (1238)
T KOG1127|consen 652 ALGLI 656 (1238)
T ss_pred HHHHH
Confidence 55544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-05 Score=74.16 Aligned_cols=192 Identities=10% Similarity=-0.062 Sum_probs=90.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhcc
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPDR--IVFMAVLTACSHA 428 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~ 428 (609)
+...+...|++++|...++...+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 33444555555555555555442 1233444455555555555555555555544211 1121 1233445555556
Q ss_pred CCHHHHHHHHHHhhhcCC-CCChhHH-H--HHHHHHhhcCCHHHHH------HHHHhC-CCCCCHhhHHHHHHHHHhCCC
Q 007288 429 GLVDEGLKYFKSMNDYNV-NPNKEIY-G--CVVDLLGRAGRVKEAY------ELIKSM-PFKPDESVWGPLLGACKEHRL 497 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~------~~~~~~-~~~p~~~~~~~l~~~~~~~~~ 497 (609)
|++++|..+++....... .+..... + .++.-+...|....+. ...... +.............++...|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 666666666655532111 1111111 1 1122222223211111 111110 000011111234455667777
Q ss_pred hHHHHHHHHHHhccCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 498 PNLGKLAALRVLDLKP---------NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+.|...++.+....- .........+.++...|++++|.+.+.......
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7777777766644211 124455567778889999999999998887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-05 Score=85.55 Aligned_cols=323 Identities=9% Similarity=-0.016 Sum_probs=204.6
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC------hh--HHHHHHHHHH
Q 007288 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE----KD------LI--TWNTIIAGYE 291 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~------~~--~~~~li~~~~ 291 (609)
....|+++.+...++.+.......+..........+...|++++|...+....+ .+ .. ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345667776666665542221122333334555666788999999888876531 11 11 1122223445
Q ss_pred hCC-chHHHHHHHHhHHCCCCCCH----HhHHHHHHHHHhhccHHHHHHHHHHHHHhCC---C--CchhHHHHHHHHHHh
Q 007288 292 KSG-SSECLNMFSKMKSERFSPNC----FTFTSIIAACATLAALSCGQQVHAGIVRRGL---D--GNLALANALIDMYAK 361 (609)
Q Consensus 292 ~~~-~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~ 361 (609)
..| .++|...+++....-...+. ...+.+...+...|+++.|...+.......- . .....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677 89999999887653111122 2334455566789999999999988764311 1 112345566778889
Q ss_pred cCCHHHHHHHHHhcCC-------CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHh
Q 007288 362 CGNISDSQKIFSEMSD-------RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS--GVRPD--RIVFMAVLTACS 426 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~ 426 (609)
.|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998877542 11 123444556677789999999999887652 11222 234555666788
Q ss_pred ccCCHHHHHHHHHHhhhcCCCC-ChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----hhHHHHHHHHHh
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNP-NKEIY-----GCVVDLLGRAGRVKEAYELIKSMPFK--PDE----SVWGPLLGACKE 494 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~ 494 (609)
..|++++|.+.+.......... ....+ ...+..+...|+.+.|.+.+...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998874321111 11111 11224455689999999998776211 111 113345577889
Q ss_pred CCChHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 495 HRLPNLGKLAALRVLDLKP------NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.|++++|...++++..... ....++..++.+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999876421 223467778999999999999999999998743
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00012 Score=72.89 Aligned_cols=193 Identities=12% Similarity=0.047 Sum_probs=109.6
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Cc--chHHHHHHHH
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-----DL--VTWTSMMIGY 390 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~ 390 (609)
..+...+...|+++.|...++...+.. +.+...+..+..+|...|++++|...++...+- +. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 344455667777777777777777654 334556677777788888888888887776631 11 2344567777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCHHHHHHH--H-HHhhhcCC-CCChhHHHHHHHHHhh
Q 007288 391 GAHGHGKEAIELFDEMVKSGV-RPDRIVF-M--AVLTACSHAGLVDEGLKY--F-KSMNDYNV-NPNKEIYGCVVDLLGR 462 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~ 462 (609)
...|++++|..++++...... .+..... + .++.-+...|....+.+. + ........ ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 888888888888888754321 1111111 1 223333344433333222 1 11111100 1111222246667778
Q ss_pred cCCHHHHHHHHHhCC--CCC---CH----hhHHHHH--HHHHhCCChHHHHHHHHHHhcc
Q 007288 463 AGRVKEAYELIKSMP--FKP---DE----SVWGPLL--GACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~--~~p---~~----~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
.|+.++|..+++.+. ... .. .+-..++ -++...|+.+.|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999988887761 111 11 1111222 4467889999999988887664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-06 Score=75.87 Aligned_cols=120 Identities=9% Similarity=0.092 Sum_probs=97.7
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHhCCC--hHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA-CKEHRL--PNLG 501 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a 501 (609)
..++.+++...++...+.+ +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3566777777777776655 457888888999999999999999999887 4556 45556666665 466676 5899
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+++++++.+|++..++..++..+.+.|++++|+..|+++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999988654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-05 Score=78.05 Aligned_cols=449 Identities=12% Similarity=0.018 Sum_probs=226.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCC-CCCcchhhHHHHHH
Q 007288 79 SWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL-EGSIYVENSLMDVY 157 (609)
Q Consensus 79 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 157 (609)
.|..|...|+...+..+|...|+...+.+. -|......+...|++..+++.|..+.-..-+... .--...|..+--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 466666666655566667777766665322 1444556666667777777776666221111110 00111222233334
Q ss_pred HhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHH--HHHHccCCchh
Q 007288 158 ATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAV--RACASTGWVSF 232 (609)
Q Consensus 158 ~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g~~~~ 232 (609)
.+.+ +...|..-|+.... .|...|..+..+|...|++..|+++|++.... .|+. +|.... ..-+..|.+.+
T Consensus 573 Lea~-n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAH-NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCcc-chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHH
Confidence 4455 66666666665433 35566677777777777777777777766543 3332 222211 22345667777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHH-------HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC--c---hHHHH
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMY-------CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG--S---SECLN 300 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~---~~a~~ 300 (609)
+...+..+...- ..-....+.+...+ .-.|-..+|.++|+.-.+. ..+.++...+... + ..|..
T Consensus 649 ald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~---f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 649 ALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES---FIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred HHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHhhhhhHHHHHHHhHHHH
Confidence 766666655431 11111112222222 2223333333333322110 0011111111111 1 12222
Q ss_pred HHHHhHHCCCCCCHHhHHHHHHHHHhhccH---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC----CHH
Q 007288 301 MFSKMKSERFSPNCFTFTSIIAACATLAAL---S---CGQQVHAGIVRRGLDGNLALANALIDMYAK----CG----NIS 366 (609)
Q Consensus 301 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~ 366 (609)
+|-... .. .|+......+..-....+.. + .+.+.+-.-.+ ...+...+..|+..|.+ +| +..
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 222222 11 22222222222212222221 1 01111111111 11223333333333332 12 223
Q ss_pred HHHHHHHhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 367 DSQKIFSEMS---DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 367 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.|...+.... ..+..+||.|.-. ...|++.-|...|-+-... .+....+|..+.-.|.+..+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5666666554 3566778777655 5557777777766665553 233455788888888888899999999988866
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhCCChHHHHH----------HHH
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-------PFKPDESVWGPLLGACKEHRLPNLGKL----------AAL 506 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~~~ 506 (609)
..+ .+...|-.........|+.-++..+|..- +..|+.--|..........|+.++-+. ..+
T Consensus 879 LdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 442 24445544444445667777777777552 334555555555555566666554443 344
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 507 RVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 507 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+.....|++..+|...+......+.+.+|.++..+..
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455678888899999999888888888888877764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-06 Score=82.34 Aligned_cols=245 Identities=14% Similarity=0.148 Sum_probs=172.4
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCC-chHHH
Q 007288 224 CASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNTIIAGYEKSG-SSECL 299 (609)
Q Consensus 224 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~a~ 299 (609)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |....-.|...|...| -.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888888875 667788888888888888888888888887652 5567777778888888 88888
Q ss_pred HHHHHhHHCCCC--------CCHHhHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007288 300 NMFSKMKSERFS--------PNCFTFTSIIAACATLAALSCGQQVHAGIV-RRGLDGNLALANALIDMYAKCGNISDSQK 370 (609)
Q Consensus 300 ~~~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (609)
+.+++-+....+ ++..+-.. ........+....++|-++. ..+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888877553210 00000000 11222233444455555444 45545788888888888999999999999
Q ss_pred HHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhh---
Q 007288 371 IFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMND--- 443 (609)
Q Consensus 371 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 443 (609)
.|+.... | |...||.|...++...+.++|+..|++.++ ++|+-+ +...|.-+|...|.+++|...|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9998873 4 667899999999999999999999999998 678775 555566789999999999888776532
Q ss_pred cCC------CCChhHHHHHHHHHhhcCCHHHHHHHH
Q 007288 444 YNV------NPNKEIYGCVVDLLGRAGRVKEAYELI 473 (609)
Q Consensus 444 ~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
.+. .++...|..|=.++.-.++.|-+.+..
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 111 112345666656666666666554444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-05 Score=86.84 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=165.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD--------RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
+.....|-..|......+++++|.+++++... .-...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44456677778888889999999999988873 13356888887777778888999999999883 223458
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP---DESVWGPLLGAC 492 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 492 (609)
|..|..-|.+.+.+++|.++++.| .+.+ -...+|..+++.+.+..+-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 889999999999999999999999 5555 57788999999999999999999999877 3334 344555566777
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
.+.|+.+.+..+|+..+.-.|.-...|+.+++.-.+.|+.+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999987764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-05 Score=81.36 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=160.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
+.+|--..-..+...+.+.|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+|+...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566677889999999999999999987 4788889999999999999999998887 4789999999999
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 501 (609)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| -..+|-.+.-+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 888888899999998876221 1122333344578999999988765 4444 567888888889999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEE
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 556 (609)
...|.....++|++...|+++..+|.+.|+-.+|...+++..+-+. .+...|-
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWE 591 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWE 591 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeee
Confidence 9999999999999999999999999999999999999999988663 3444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=70.71 Aligned_cols=121 Identities=11% Similarity=-0.049 Sum_probs=75.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP 480 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 480 (609)
++++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...+..+..++.+.|++++|+..|++. ...|
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444444 23443 3345556667777777777777765544 235666666777777777777777777666 3334
Q ss_pred -CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 481 -DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 481 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+...+..+..++...|+.++|...++++++..|+++..+...+.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45566666666777777777777777777777776666666555543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=56.01 Aligned_cols=33 Identities=30% Similarity=0.635 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 244 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.5e-05 Score=71.86 Aligned_cols=213 Identities=12% Similarity=0.126 Sum_probs=134.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH--HHHHH
Q 007288 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHG--KEAIE 401 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~ 401 (609)
+..+.|..+..++++.. +-+..+++.-..++.+.| ++++++..++.+.+ .+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444332 112223333333344444 45667776666653 2334565554445555542 66778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHH
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA---GRV----KEAYELIK 474 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 474 (609)
+++++.+.. .-|..+|......+...|+++++++.++++.+.++. |...|+.....+.+. |.. +++++...
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 888887743 235567887777788888888888888888776644 566666666555444 222 45666664
Q ss_pred hC-CCCC-CHhhHHHHHHHHHhC----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC------------------
Q 007288 475 SM-PFKP-DESVWGPLLGACKEH----RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG------------------ 530 (609)
Q Consensus 475 ~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 530 (609)
++ ...| |...|+.+...+... ++..+|...+.++...+|.+..++..|++.|....
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 43 5555 567888888887763 34567888888888889988999999999998743
Q ss_pred ChHHHHHHHHHHH
Q 007288 531 KWEEFAKFRKIMR 543 (609)
Q Consensus 531 ~~~~A~~~~~~m~ 543 (609)
..++|..+++.+.
T Consensus 288 ~~~~a~~~~~~l~ 300 (320)
T PLN02789 288 DSTLAQAVCSELE 300 (320)
T ss_pred cHHHHHHHHHHHH
Confidence 2367888888884
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=55.34 Aligned_cols=32 Identities=31% Similarity=0.661 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 410 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
|+.||..||+.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-05 Score=77.52 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=176.9
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHH
Q 007288 245 FGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAA 323 (609)
Q Consensus 245 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 323 (609)
++|-...-..+...+.+.|-...|..+|+++. .|..+|.+|...| ..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 45555566778889999999999999999864 6888999999999 8999888888776 47899999999888
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHH
Q 007288 324 CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAI 400 (609)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 400 (609)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88877888888888765432 1122233334578999999999877643 4468888888889999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 401 ELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 401 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+++..+.+ .-+..+|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999887 56766 499999999999999999999999998888 446777888888889999999999999888
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=83.55 Aligned_cols=206 Identities=9% Similarity=-0.001 Sum_probs=135.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
++..+..|.....+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|....++...... -+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHH
Confidence 466777788888888888888888888887 567665 666777888888888888888888876552 3566677788
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSMP-FKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
.++...|++++|.++|+++- ..|+ ...+.++..++...|+.++|...|+++++..-+-...|+.++ ++.+.-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 235 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNAD 235 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHH
Confidence 88888888888888888882 3343 667777888888888888888888888886543334444332 223333
Q ss_pred HHHHHHHHhCCCcccCceeEEEeC----------------------CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcC
Q 007288 536 AKFRKIMRGMGSKKEVGMSWIEVR----------------------DKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETA 593 (609)
Q Consensus 536 ~~~~~~m~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g 593 (609)
..+++++.-.+......++.+.+. +++ .++......+-++. .+..|...+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rI-l~vi~sl~~GGAEr---~~~~La~~l~~~~ 311 (694)
T PRK15179 236 LAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPV-LMINGSLGAGGAER---QFVNTAVALQSAI 311 (694)
T ss_pred HHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCcceE-EEEeCCCCCCcHHH---HHHHHHHHHHhcc
Confidence 445555543333222222211111 111 12333333344443 4678888888888
Q ss_pred cccC
Q 007288 594 YEPD 597 (609)
Q Consensus 594 ~~pd 597 (609)
+.|+
T Consensus 312 ~~~~ 315 (694)
T PRK15179 312 QQGQ 315 (694)
T ss_pred cCcc
Confidence 7666
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-06 Score=71.06 Aligned_cols=108 Identities=10% Similarity=-0.111 Sum_probs=91.8
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.+++...+. .|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445555442 243 3556788889999999999999987 4555 677888888999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++..+..++.++...|++++|+..+++..+..+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-05 Score=68.67 Aligned_cols=156 Identities=11% Similarity=0.124 Sum_probs=117.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
-+-.|...|+++.+....+.+..+.. .+...++.+++...++...+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567788888877655544433210 1223567788888888877753 45667899999999999999999
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLL-GRAGR--VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
...|++..+... -+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..+++++
T Consensus 93 ~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999977653 3677888888864 67777 59999999988 5556 45677777788999999999999999999
Q ss_pred ccCCCCcchHH
Q 007288 510 DLKPNMMGTYI 520 (609)
Q Consensus 510 ~~~p~~~~~~~ 520 (609)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99886655443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0043 Score=60.91 Aligned_cols=209 Identities=12% Similarity=0.065 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCG---NISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELF 403 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (609)
+++..+++.....-...+..+|..+.+---..- ..+.....++++.. .-..+|...+..-.+......|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 444455554443322333444443332211111 24444455555542 33457888888888888999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 007288 404 DEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PF 478 (609)
Q Consensus 404 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 478 (609)
.+..+.+..+ ....+++++..+|. ++.+.|.++|+.= ++.| .+..--...++-+.+.++-..|..+|++. ++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988887 66788889987775 6778999999875 4433 34455567888899999999999999988 23
Q ss_pred CC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 479 KP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM----MGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 479 ~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
.| ....|..++.--..-|+...+..+-++.....|.+ ...-..+++.|.-.+.+..-..-++.+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 33 35789999999999999999999888876655522 224455677777777765444444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-05 Score=67.03 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHR 496 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 496 (609)
..+-..+...|+-+....+...... ..+.|......++....+.|++.+|...+.+. ...+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444555556665555555555422 12234445555666666677777777666666 33446666666666667777
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+++.|...|.+++++.|+++..++.++-.|.-.|+.+.|..++......
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7777777777777777766666777777777777777777666666543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-05 Score=64.37 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=97.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+....-.+...+...|++++|..+|+-+ ...| +..-|-.|..+|...|++++|+..|.++..++|+++..+..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556677788999999999999988 3445 5667888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 007288 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 591 (609)
...|+.+.|.+.|+..+... + .+|+..++.++.+..+..|.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999987632 1 345666666666666665543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00031 Score=68.02 Aligned_cols=236 Identities=16% Similarity=0.122 Sum_probs=145.3
Q ss_pred HHHHHHhCC--chHHHHHHHHhHH---CCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCCchhHHHHHHHH
Q 007288 286 IIAGYEKSG--SSECLNMFSKMKS---ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDM 358 (609)
Q Consensus 286 li~~~~~~~--~~~a~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 358 (609)
-+..+.+.| .....+.|+++.. .+-.|+....+. =.-..++..+...-+.+... .-.|+...+...+..
T Consensus 208 Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 208 GITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 345566777 5556677777763 333333322110 00111222222222222211 123444455555544
Q ss_pred HHhcCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~ 436 (609)
.........+..++....+ .....+......+...|++++|+..++.++.. .|+. .........+.+.++.++|.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred HhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 4333333333333333333 22233333444455778899999999998875 4544 455555677889999999999
Q ss_pred HHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 437 YFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 437 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.++++.... |+ ....-.+.++|.+.|++.+|+.++++. ...-|...|..|..+|...|+..++...
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence 999987643 44 555667888999999999999998887 3334678888888999999988766653
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.++.|...|+|++|+..+....++.
T Consensus 431 --------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 --------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4567788899999999998888754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0053 Score=60.31 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=86.0
Q ss_pred CChhHHhHHHHHHHccCChhHHHHhhccCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007288 44 GPSILATNLIKSYFDEGLIEEARTLFDEMPE--R-DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLK 120 (609)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 120 (609)
-|+..|+.||+-+..+ .++++++.++.+.. | ....|..-|..-...++++....+|.+....-. +..-|...|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 4788999999988888 99999999999875 3 456799999999999999999999999887544 4444554444
Q ss_pred HhhC-CCChH----HHHHHHHHHH-HhCCCC-CcchhhHHHHHHH---------hcCCCHHHHHHHHccCCC
Q 007288 121 ACKG-MKSLS----NAALVHGMAI-KEGLEG-SIYVENSLMDVYA---------TCCISMDNARLVFNDMKW 176 (609)
Q Consensus 121 ~~~~-~~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~ll~~~~---------~~g~~~~~A~~~~~~~~~ 176 (609)
--.+ .++.. ...+.++... +.|.++ +..+|+..+..+- ... +++..+++++++..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q-RI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ-RITAVRRIYQRALV 165 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH-HHHHHHHHHHHHhc
Confidence 3221 12222 2233344333 346543 3345666665443 223 56677788877654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0088 Score=62.43 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCChH---HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 007288 485 WGPLLGACKEHRLPN---LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSKK 549 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 549 (609)
.+.|+..+.+.++.. +|+-+++..+...|.|..+-..++.+|.-.|-+..|.++++.+-=+.+..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 455667788777765 56777777788888888888888888888888888888888875555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-05 Score=74.04 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
.....|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|++++++. ...| +..........+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667777788899999999999997654 44 3445788888889999999999887 3344 4444444457799
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+.++++.|+.+.+++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0001 Score=68.40 Aligned_cols=181 Identities=14% Similarity=0.061 Sum_probs=123.7
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cc---hHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-G-NLALANALIDMYAKCGNISDSQKIFSEMSD--RD-LV---TWT 384 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 384 (609)
....+......+...|+++.|...++++...... + ....+..+..+|.+.|++++|...++.+.+ |+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777888889999999999999998876422 1 124667788999999999999999999874 32 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 007288 385 SMMIGYGAH--------GHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGC 455 (609)
Q Consensus 385 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
.+..++... |++++|.+.|+.+.+. .|+.. ....+.... . .. .... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHHH--------HHHHH
Confidence 556666654 7889999999999875 45432 222221110 0 00 0000 01124
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 456 VVDLLGRAGRVKEAYELIKSM----PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+...+.+.|++++|+..+++. +..| ....+..+..++.+.|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566788889999988888777 2223 245777888888899999999888877766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=68.06 Aligned_cols=188 Identities=9% Similarity=0.102 Sum_probs=139.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--H
Q 007288 358 MYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHG-HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL--V 431 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~ 431 (609)
++...++.++|+.+.+.+.+. +..+|+....++...| ++++++..++++.+.. +-+..+|+.-...+.+.|+ .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 344567888999999888753 3345666666666677 6799999999999853 2244466665555566665 3
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC---CC----hHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH---RL----PNLGK 502 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~~~a~ 502 (609)
++++.+++.+.+.+. -+..+|+....++.+.|+++++++.++++ ...| +...|+....++.+. |. .+.+.
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 678899988877663 37889999999999999999999999998 3333 566777766555544 22 24677
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 547 (609)
....+++..+|+|..+|..+..++.. .++..+|.+++.+..+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 88889999999999999999999988 3456778888888766443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=65.53 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
......+...+...|++++|.+.++.+ ...| +...|..+..++...|+++.|...++++++..|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666777777777777777776 3334 45566666677777888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888777643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0007 Score=73.40 Aligned_cols=197 Identities=11% Similarity=0.149 Sum_probs=91.7
Q ss_pred HHHHHHHHHccCCchhHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 007288 217 FSIAVRACASTGWVSFGKLIHAAVIKH-GFGS---NLPVMNSILDMYCRFDCLSDANQYFDEMTEK--DLITWNTIIAGY 290 (609)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~ 290 (609)
|..-|......++.+.|.++.++++.. ++.- -..+|.++++.-..-|.-+...++|++..+- ....|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344444444555555555555554432 1110 1224444444444444445555555554431 123344555555
Q ss_pred HhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHH
Q 007288 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD-GNLALANALIDMYAKCGNISDS 368 (609)
Q Consensus 291 ~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 368 (609)
.+.+ .++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+.-.. -........+.+-.+.|+.+++
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 5555 55555555555543 1123344444555555555555555555554443111 1223333444444555555555
Q ss_pred HHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 369 QKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 369 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
..+|+..... -...|+..|+.-.++|+.+.+..+|++.+..++.|-
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5555554421 234455555555555555555555555555554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=76.46 Aligned_cols=213 Identities=11% Similarity=0.112 Sum_probs=134.0
Q ss_pred ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHH-HHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007288 279 DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTS-IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356 (609)
Q Consensus 279 ~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (609)
+...|..|+..+...+ +++|.++.+...+. .|+...+.. +...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5567888888887777 88888888866553 455443322 22234444554444333 222
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
.......++.-...+...+.. .+...+..+..+|-+.|+.++|..+|+++++.. .-|..+.+.+.-.|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222233333222223323322 123456667778888888888888888888854 33556777777777777 88888
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----------------------CCCCCHhhHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----------------------PFKPDESVWGPLLGAC 492 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~~~ 492 (609)
.+++.+.... +...+++..+.++|.++ +..--..++.-+...|
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 8888777443 22233333333333333 2222344555556778
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...++++++..+++.+++.+|.|..+...++..|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 89999999999999999999999999888988887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00066 Score=60.41 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLV 431 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~ 431 (609)
...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|.+ --+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 344556666666666655522 222222223334455566666666666665 1244455555555443 2346
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCCh-HHHHHHHHHH
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLP-NLGKLAALRV 508 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 508 (609)
..|.-+|++|.+ ..+|+..+.+....++...|++++|..++++. ....+..+...++-+....|.. +.-.+...++
T Consensus 190 qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 190 QDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 666666666632 23456666666666666666666666666665 2223444544455444444433 3334455555
Q ss_pred hccCC
Q 007288 509 LDLKP 513 (609)
Q Consensus 509 ~~~~p 513 (609)
....|
T Consensus 269 k~~~p 273 (299)
T KOG3081|consen 269 KLSHP 273 (299)
T ss_pred HhcCC
Confidence 55555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00031 Score=62.48 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
+-..+...|+-+....+....... ..-|.......+......|++.+|+..+++..... ++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 344455555555555555543321 12233344446666666667777776666665433 4566666666666777777
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007288 466 VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
+++|..-|.+. .+.| +....+.+...+.-.|+.+.|..++.......+.+...-..|+.+....|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77766666555 3333 344555666666666677777776666666666666666667777777777776665543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00045 Score=73.15 Aligned_cols=143 Identities=7% Similarity=0.037 Sum_probs=117.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 007288 344 GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFM 419 (609)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 419 (609)
..+.+...+..|..+..+.|.+++|+.+++.+.+ | +......+..++.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3456688889999999999999999999999984 5 4456777889999999999999999999985 5655 4667
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHH
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLL 489 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 489 (609)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++. ...|-...|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77788999999999999999997733 335788889999999999999999999988 3344455555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.5e-06 Score=50.64 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNA 112 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 112 (609)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=71.01 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 431 (609)
..+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+......-...|.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34566666678899999999999988777777778888888889999999999998752 33555666666778899999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD 481 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 481 (609)
+.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+-.++.+|..|.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 99999999997744 33566999999999999999999999999976553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.9e-06 Score=49.78 Aligned_cols=34 Identities=41% Similarity=0.659 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 213 (609)
.+||++|.+|++.|++++|.++|++|...|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999988888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0042 Score=55.49 Aligned_cols=148 Identities=12% Similarity=0.007 Sum_probs=103.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh----hc
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG----RA 463 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 463 (609)
..|+..|++++|++..+... . ......=...+.+..+.+-|.+.++.|.+.. +..+.+.|..++. -.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 45778888888888777621 1 2222222334556677888888888886633 4556665555554 34
Q ss_pred CCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH-HHHH
Q 007288 464 GRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA-KFRK 540 (609)
Q Consensus 464 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 540 (609)
+...+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..+++++.+...++-.-...|+-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5688888888888 366777777777788888888888888888888888888888888777777777775554 4455
Q ss_pred HHHh
Q 007288 541 IMRG 544 (609)
Q Consensus 541 ~m~~ 544 (609)
+++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00056 Score=66.28 Aligned_cols=178 Identities=19% Similarity=0.094 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007288 363 GNISDSQKIFSEMSD------RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLK 436 (609)
Q Consensus 363 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
.++.++...-+.+.. ++...+...+.+......-..+..++. +... ..-...-|..-+ .+...|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 345556656666653 344455555554433322222222222 2222 111222343333 3456789999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 437 YFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.++.+.+. .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+..++....-+|+
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 99998663 3456777778889999999999999999998 56676 556667779999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 515 MMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
++..|..|+.+|...|+..+|....-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999998877765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7e-06 Score=49.34 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNP 110 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 110 (609)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567888888888888888888888888777776
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00081 Score=59.40 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=84.4
Q ss_pred hccHHHHHHHHHHHHH---hC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCHHH
Q 007288 327 LAALSCGQQVHAGIVR---RG-LDGNLA-LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSM---MIGYGAHGHGKE 398 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 398 (609)
..+.++..+++..+.. +| ..++.. +|.-++-+...+|+.+.|..+++.+...-+.++... ..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3456666666665542 22 233332 223333444445555555555555443111111111 111233455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P 477 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 477 (609)
|+++++.+.+.. +.|..++.-=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 555555555543 22333444333344444444455554444432 13445555555555555555555555555555 2
Q ss_pred CCC-CHhhHHHHHHHHHhC---CChHHHHHHHHHHhccCCCC
Q 007288 478 FKP-DESVWGPLLGACKEH---RLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 478 ~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~ 515 (609)
+.| +...+..+...+.-. .+.+.+...|.+++++.|.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 233 222333333332221 24445555555555555533
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0055 Score=65.94 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=19.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
+...|..|+..+...+++++|.++.+...+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666666766667777777776665444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.029 Score=58.74 Aligned_cols=481 Identities=11% Similarity=0.034 Sum_probs=245.5
Q ss_pred HhHHHHHH--HccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhh
Q 007288 49 ATNLIKSY--FDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACK 123 (609)
Q Consensus 49 ~~~li~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 123 (609)
|..++.++ .|.|+.++|..+++.... .|..+...+-..|...++.++|..+|++.... .|+..-...+..+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 55555554 478999999988887653 36677888888889999999999999998764 567777777888888
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC---------HHHHHHHHccCCCCC-----hhhHHHHHHHH
Q 007288 124 GMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---------MDNARLVFNDMKWKN-----DVSWTTLITGY 189 (609)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---------~~~A~~~~~~~~~~~-----~~~~~~li~~~ 189 (609)
+.+++.+-.++--++-+.-++ +.+.+=++++.+...-.. ..-|.+.++.+.+.+ ..-...-...+
T Consensus 122 R~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 888887766665555554333 333333344444332111 223444444444332 11122223444
Q ss_pred HhcCChhhHHHHH-HHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHH--------
Q 007288 190 AHSGNGYGGLGVF-KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYC-------- 260 (609)
Q Consensus 190 ~~~g~~~~a~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-------- 260 (609)
-..|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++-.++...| ..| |...++.+.
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~ 276 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNK 276 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhccc
Confidence 5577888888888 333333333344444556666777888888888888887776 222 333222211
Q ss_pred --------hcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH---hCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhh
Q 007288 261 --------RFDCLSDANQYFDEMTEK-DLITWNTIIAGYE---KSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATL 327 (609)
Q Consensus 261 --------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 327 (609)
..+..+...+..++.... ...+|-+-+.... .-| .+++...|-+-. |-.| .|..=+..+...
T Consensus 277 ~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~ 351 (932)
T KOG2053|consen 277 EPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGH 351 (932)
T ss_pred ccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhcc
Confidence 112223332222222211 1112222222222 223 444433322211 1111 111111111111
Q ss_pred ccHHHHHHHHHHHHHhCCC--Cch---hHHHHHHHHHHhcCC-----HHHHHHHHHhc----CC---------CCc----
Q 007288 328 AALSCGQQVHAGIVRRGLD--GNL---ALANALIDMYAKCGN-----ISDSQKIFSEM----SD---------RDL---- 380 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~g~-----~~~A~~~~~~~----~~---------~~~---- 380 (609)
=..++-..++......... .|. ..+...+..-.-.|. -+.-..++.++ .. |+.
T Consensus 352 l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g 431 (932)
T KOG2053|consen 352 LNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFG 431 (932)
T ss_pred CCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccH
Confidence 1122222222222211000 000 001111221122221 11112222111 11 111
Q ss_pred -----chHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH
Q 007288 381 -----VTWTSMMIGYGAHGHGK---EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI 452 (609)
Q Consensus 381 -----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (609)
-+.+.|++.+.+.++.. +|+-+++.-.... +-|..+=..+|+.|+-.|-+..|.++|+.+.-.++..|...
T Consensus 432 ~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg 510 (932)
T KOG2053|consen 432 DELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG 510 (932)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch
Confidence 24567778888877765 3444444444421 23444556677888888999999999988844456666555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC----CcchHHHHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN----MMGTYIILSNIY 526 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~ 526 (609)
|- +...+...|++..+...++.. .+ .-+..--.-.|....+.|.+.+..+...--.++.-. -..+-+.....+
T Consensus 511 h~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll 589 (932)
T KOG2053|consen 511 HL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLL 589 (932)
T ss_pred HH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 345556677877777776655 10 011111122344445667777666554433333321 122334567777
Q ss_pred HhcCChHHHHHHHHHHH
Q 007288 527 AAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~ 543 (609)
...++.++-...+..|.
T Consensus 590 ~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 590 CNADRGTQLLKLLESMK 606 (932)
T ss_pred HhCCcHHHHHHHHhccc
Confidence 77888888888887776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=59.54 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=85.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007288 402 LFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK 479 (609)
Q Consensus 402 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 479 (609)
.+++... ..|+. .....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555554 34433 455666777888899999999998886654 346778888888888999999999888877 344
Q ss_pred C-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 480 P-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 480 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
| +...+..+...+...|+++.|...++++++..|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4566777778888999999999999999999986544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=47.86 Aligned_cols=33 Identities=33% Similarity=0.658 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP 413 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 413 (609)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577788888888888888888888888877776
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00086 Score=59.22 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=144.4
Q ss_pred cCCHHHHHHHHHhcCC--------CCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCH
Q 007288 362 CGNISDSQKIFSEMSD--------RDL-VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLV 431 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 431 (609)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++.+..+ + |.+. .-..-.--+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888888762 233 24555666777889999999999999886 4 5544 222222335667999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
++|+++++.+.+.+ +.|..++..-+-..-..|+.-+|++-+.+. .+-.|...|.-|...|...|+++.|.-.+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999997766 456777777777777788888888877776 566799999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCC---hHHHHHHHHHHHhCCC
Q 007288 510 DLKPNMMGTYIILSNIYAAEGK---WEEFAKFRKIMRGMGS 547 (609)
Q Consensus 510 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~ 547 (609)
=+.|.++..+..+++.+...|- ..-|.++|.+..+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999887764 5678888888887554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00079 Score=56.78 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh--hHHHHHHHHHhhcCCH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK--EIYGCVVDLLGRAGRV 466 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 466 (609)
.++...+...++.+.+.. |+. ...-.+...+...|++++|...|+........++. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555532 111 12223334455556666666666665443322211 1222344555555555
Q ss_pred HHHHHHHHhCCCCC-CHhhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 467 KEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 467 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
++|+..++.....+ ....+......+.+.|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555432111 122222233444444444444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.4e-05 Score=55.49 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG-KWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 545 (609)
+..+|..+...+...|++++|+..|+++++++|+++..|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888899999999999999999999999999999999999999999 799999999988763
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=55.42 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 530 (609)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...++.+....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33343 3556666777888888999999999888888877778888899999999
Q ss_pred ChHHHHHHHHHHHhC
Q 007288 531 KWEEFAKFRKIMRGM 545 (609)
Q Consensus 531 ~~~~A~~~~~~m~~~ 545 (609)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888887653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=57.78 Aligned_cols=94 Identities=16% Similarity=0.001 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC---cchHHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSN 524 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 524 (609)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+..++.+.|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666665555 12222 1233445555666666666666666666655543 334556666
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 007288 525 IYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.5e-05 Score=58.70 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 464 GRVKEAYELIKSM-PFKP---DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 464 g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1112 233344455556666666666666655 4455544455556677777777777777666
Q ss_pred HH
Q 007288 540 KI 541 (609)
Q Consensus 540 ~~ 541 (609)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00088 Score=56.48 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=91.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP--NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLL 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~ 489 (609)
.|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+.. ...|+. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444555555 4788899999999996543221 1233344668889999999999999998 222443 2344556
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
..+...|++++|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7899999999999999774 333445678888999999999999999999864
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.9e-05 Score=53.44 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+...+.+.|++++|...++++++..|++...+..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999999999999976443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.1e-05 Score=44.73 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 007288 78 VSWTVMIAGYTSFNCHNQAWTVFVEMVRNEV 108 (609)
Q Consensus 78 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 108 (609)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00061 Score=55.19 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVN--PNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLL 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 489 (609)
++..+...+.+.|++++|...|..+...... .....+..+..++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566666666666666666443211 11234445666677777777777777665 22232 33455556
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
.++.+.|+.+.|...++++++..|++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 667777777777777777777777654433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0082 Score=50.53 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=115.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
+..+.=++++...-..+-.+ ..|....-..|..+....|++.+|...|++...--+--|..+.-.+.++....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33343444444333333222 4677777777888999999999999999998765556678888888999999999999
Q ss_pred HHHHHHhCC-CCC---CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 469 AYELIKSMP-FKP---DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 469 A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
|...++++. ..| +..+...+.+.+...|.+..|+..|+.++...| .+..-......+.++|+.++|..-+..+.+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999998872 223 233445566889999999999999999999999 577788888999999998888776655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00036 Score=68.50 Aligned_cols=107 Identities=13% Similarity=0.041 Sum_probs=85.4
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 499 (609)
...+...|++++|+..|+++.+... .+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4556678999999999999977553 36777888888999999999999999888 4555 4567777788899999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
+|+..++++++++|++......+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999998877766665554333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00047 Score=62.65 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=75.7
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~ 502 (609)
..+.++|.+|+..|.+.++... -|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4567788888888888877542 35566666777888888888887777665 55554 567888888888888888888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
+.|+++++++|++......|-.+=.+.+.
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 88888888888777555555554444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.2e-05 Score=43.98 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGV 210 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 210 (609)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=64.64 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=76.8
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
+-+.+.+++++|+..|.+. .+.|+.. -|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566889999999999887 6777554 4455568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007288 536 AKFRKIMRG 544 (609)
Q Consensus 536 ~~~~~~m~~ 544 (609)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999988865
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.071 Score=51.12 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV 431 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 431 (609)
.+..+.-+...|+...|.++-.+..=|+-..|...+.+++..++|++-.++... +-++.-|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556677777777777777667777777777777777777766554321 11235666677777777777
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
.+|..+..++ + +..-+..|.++|++.+|.+.--+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777666652 1 133456667777777776665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=59.64 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH-hC--CChHHHHHHHHHHhccCCCCcchHHH
Q 007288 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK-EH--RLPNLGKLAALRVLDLKPNMMGTYII 521 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~-~~--~~~~~a~~~~~~~~~~~p~~~~~~~~ 521 (609)
+-|...|-.|...|...|+.+.|...|.+. .+.| +...+..+..++. .. ....++..+++++++.+|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999999887 3444 3444555554433 22 24568899999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcccCce
Q 007288 522 LSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGM 553 (609)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 553 (609)
|+..+...|++.+|...|+.|.+.....+|+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999999777555433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00081 Score=58.66 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
.+..+...+...|++++|...|++. ...|+ ...+..+..++.+.|++++|...++++++..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555555555555555544 11121 245566667777777777777777777777777777777777777
Q ss_pred HhcCC--------------hHHHHHHHHHHHh
Q 007288 527 AAEGK--------------WEEFAKFRKIMRG 544 (609)
Q Consensus 527 ~~~g~--------------~~~A~~~~~~m~~ 544 (609)
...|+ +++|.+++++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 77666 4555566555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=55.34 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD--RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34566666677777778888777777776433222 24666667777777777777777777755332 2344555566
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
..+...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666655544322221 112677888889989888865 5556666555554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=64.18 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=84.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV 466 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
...+...|++++|++.|+++++.. .-+...|..+..+|...|++++|+..++++..... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 455678899999999999999853 23556888888999999999999999999977552 3677888899999999999
Q ss_pred HHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 007288 467 KEAYELIKSM-PFKPDESVWGPLLGAC 492 (609)
Q Consensus 467 ~~A~~~~~~~-~~~p~~~~~~~l~~~~ 492 (609)
++|+..|++. .+.|+......++..|
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999987 5667766655555333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=51.07 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=54.1
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
-..+.+.++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.+++..+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35688999999999999999999999999999999999999999999999999987655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=52.22 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=46.7
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+.|++++|+..+++++...|++...+..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999999999999999999999999988876443
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0018 Score=49.64 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGV-RPDRIVFMAVLTACSHAG--------LVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566666999999999999999999 899999999999887653 3456788899998889999999999
Q ss_pred HHHHHHhh
Q 007288 455 CVVDLLGR 462 (609)
Q Consensus 455 ~l~~~~~~ 462 (609)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=49.79 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------CchhHHHHHHHHHHhCCCCChhHH
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGV-EMNPYSFSIAVRACASTG--------WVSFGKLIHAAVIKHGFGSNLPVM 252 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 252 (609)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456777777999999999999999999 899999999999987654 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 007288 253 NSILDMYCR 261 (609)
Q Consensus 253 ~~l~~~~~~ 261 (609)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=57.34 Aligned_cols=94 Identities=11% Similarity=-0.062 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
...|..+...+...|++++|+..|++. ...|+ ..+|..+..++...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888777 23332 2467788888999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHHH
Q 007288 525 IYA-------AEGKWEEFAKFRKIMR 543 (609)
Q Consensus 525 ~~~-------~~g~~~~A~~~~~~m~ 543 (609)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888886666665543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.13 Score=49.44 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 329 (609)
+.+..+.-+...|+...|.++-.+..-|+...|-..+.+++..+ |++-.++... +-.+.-|-.++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 34445666677788888888888777777777777888888777 7666554322 1234667777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
..+|..+...+. +..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 777776665521 14456677777777776554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.02 Score=52.75 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=40.2
Q ss_pred cccCCCCCCCCCChhHHhHHHHHHHccCChhHHHHhhccCCC--CCcc-c---HHHHHHHHHcCCChhHHHHHHHHHHHC
Q 007288 33 SIQSDPPLIPKGPSILATNLIKSYFDEGLIEEARTLFDEMPE--RDVV-S---WTVMIAGYTSFNCHNQAWTVFVEMVRN 106 (609)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 106 (609)
++.+..+..+..+...+-.....+.+.|++++|.+.|+.+.. |+.. . .-.+..++.+.++++.|...+++..+.
T Consensus 19 gCs~~~~~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 19 GCSGSKEEVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred hcCCCCcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 343333333333444443444555566777777777776653 3221 1 123445566777777777777777664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0057 Score=62.91 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+..+.-.+...|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4444444444455666666666666666666 355666666666666666666666666655443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00041 Score=52.08 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGV-RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|+.+++. .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666655322 11233333455556666666666666655 21111 112233334555566666666665
Q ss_pred HHHh
Q 007288 472 LIKS 475 (609)
Q Consensus 472 ~~~~ 475 (609)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0021 Score=49.11 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++...+.. +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555555555555555555431 1122344444445555555555555555543322 11223344444444444
Q ss_pred CCHHHHHHHHHh
Q 007288 464 GRVKEAYELIKS 475 (609)
Q Consensus 464 g~~~~A~~~~~~ 475 (609)
|++++|...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=63.91 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 259 (609)
.+.+++++.|.+.|..+.++.+++.=..-|+-||..|++.||..+.+.|++..|.++...|...+...+..++..-+.++
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34567888888888888888888888888888888888888888888888888888888888777666666666555555
Q ss_pred Hhc
Q 007288 260 CRF 262 (609)
Q Consensus 260 ~~~ 262 (609)
.+.
T Consensus 184 ~~~ 186 (429)
T PF10037_consen 184 YKY 186 (429)
T ss_pred HHh
Confidence 554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.021 Score=54.31 Aligned_cols=109 Identities=16% Similarity=0.282 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhcc
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH-GHGKEAIELFDEMVK----SGVRPD--RIVFMAVLTACSHA 428 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~ 428 (609)
+..|...|++..|-.++.. +...|-.. |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3445566666655544433 34445454 566666666666543 12 111 12445555566666
Q ss_pred CCHHHHHHHHHHhhhcCCC-----CChh-HHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 429 GLVDEGLKYFKSMNDYNVN-----PNKE-IYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
|++++|.++|++....... .+.. .+-..+-++...|++..|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666665332211 1111 1222233444556666666666654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.01 Score=56.51 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=105.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhhcCCCCChhH-------------
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT--ACSHAGLVDEGLKYFKSMNDYNVNPNKEI------------- 452 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 452 (609)
.++...|++++|.++-....+.. ++ ..+..+++ ++--.++.+.|...|++....+ |+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 45667788888888777766532 11 12333333 2334667788888888775543 33221
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-----VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+..=.+-..+.|++..|.+.|.+. .+.|+.. .|.....+..+.|+..+|+.-.+.+++++|.-...|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112223456788899999988877 5555433 4444445677889999999999999999998888888899999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 007288 527 AAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~ 545 (609)
...++|++|.+-+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988887653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.19 Score=48.84 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCcchHH-------HHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMS--DRDLVTWT-------SMMIGYG----AHGHGKEAIELFDEMVKSGVRPDRI 416 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~-------~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (609)
.++..++....+.++...|.+.+.-+. +|+...-. .+-+..+ ..-+...=+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 345666666777777777777766554 33322111 1111111 1112233345555555533 2332
Q ss_pred -HHHHHH---HHHhccCC-HHHHHHHHHHhhhcCCCCChhHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC-
Q 007288 417 -VFMAVL---TACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVV----DLLGRA---GRVK---EAYELIKSMPFKP- 480 (609)
Q Consensus 417 -~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p- 480 (609)
....|+ .-+-+.|. -++|+++++...+.. +-|..+-|.+. ..|..+ ..+. .-..++++.|+.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 222222 22444454 778888888875532 22443333222 222211 1122 2234445556665
Q ss_pred ---CHhhHHHHHHH--HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 481 ---DESVWGPLLGA--CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 481 ---~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+...-|.|.+| +..+|++.++.-.-.-+.++.| ++.+|..++-.+....+|++|..++..+.
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 33344555544 6689999999999999999999 89999999999999999999999997763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0058 Score=60.26 Aligned_cols=119 Identities=12% Similarity=0.059 Sum_probs=68.6
Q ss_pred CCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcchH
Q 007288 310 FSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR--GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTW 383 (609)
Q Consensus 310 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 383 (609)
.+.+...+..+++.+....+++.+..++...... ....-..+..++++.|.+.|..+.+..++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666666655543 2222233445666666666666666666655443 566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
|.|++.+.+.|++..|.++...|..++.-.+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666555555555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00072 Score=47.77 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=45.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
+...+...|++++|++.|+++ ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 4456 455666777888888888888888888888888653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.31 Score=50.45 Aligned_cols=201 Identities=11% Similarity=-0.001 Sum_probs=120.9
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhcc-CC------------CCCcccHHHHHH------HHHcCCChhHHHHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDE-MP------------ERDVVSWTVMIA------GYTSFNCHNQAWTVFVE 102 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~------------~~~~~~~~~li~------~~~~~~~~~~a~~~~~~ 102 (609)
.+|...+|.+.-..=.+.++-++++..+.+ +. +-.+..--.|++ ++.+.-++++-..+-+.
T Consensus 335 ~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~ 414 (829)
T KOG2280|consen 335 TEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRE 414 (829)
T ss_pred CCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhhcccccccCChHHHHHHHHH
Confidence 466777787777777778888888777653 11 011111223333 33455566655554444
Q ss_pred H--------HHCCCCCCcchHHH-----HHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--CCHHHH
Q 007288 103 M--------VRNEVNPNAFTLSS-----VLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCC--ISMDNA 167 (609)
Q Consensus 103 m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~~A 167 (609)
+ ..-|+..+..-|.. ++.-+...+.+..|.++-..+...-..- ..++.....-+.+.. .+-+.+
T Consensus 415 lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vl 493 (829)
T KOG2280|consen 415 LRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVL 493 (829)
T ss_pred HHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHH
Confidence 3 34577777766655 4555677788888888877664322222 466666666666542 133444
Q ss_pred HHHHccCCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCC----CCHhhHHHHHHHHHccCCchhHHHHHHHHH
Q 007288 168 RLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVE----MNPYSFSIAVRACASTGWVSFGKLIHAAVI 241 (609)
Q Consensus 168 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 241 (609)
..+=+++.. ....+|..+.+.....|+.+.|..+++.=...+.. .+...+...+.-+...|+.+....++-++.
T Consensus 494 d~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 494 DKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 445455555 46778999999889999999998887542221111 123345556666777788777777766665
Q ss_pred Hh
Q 007288 242 KH 243 (609)
Q Consensus 242 ~~ 243 (609)
..
T Consensus 574 ~~ 575 (829)
T KOG2280|consen 574 NK 575 (829)
T ss_pred HH
Confidence 43
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.014 Score=58.65 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=127.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHh---------c--CCCChhHHHHHHHHHHhCC---chHHHHHHHHhHHCCCCC
Q 007288 247 SNLPVMNSILDMYCRFDCLSDANQYFDE---------M--TEKDLITWNTIIAGYEKSG---SSECLNMFSKMKSERFSP 312 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------~--~~~~~~~~~~li~~~~~~~---~~~a~~~~~~m~~~~~~p 312 (609)
+....+.+-+..|...|.+++|..+--- + ..-+...++..=.+|.+.. +-+.+.-+++|++.|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3334444555566667776666543111 0 0012334455556666655 455555667788888888
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------C
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--------------R 378 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~ 378 (609)
+.... ...|+-.|.+.+|.++|.+- |.. +..+++|.....++.|.+++..... .
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 87643 44566678888888877643 211 2344455555555555554443321 1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFD------EMVKSGVR---PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
++.--.+....+...|+.++|..+.- -+.+-+.+ .+..+...+...+.+...+.-|.++|..|-+
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 11111223344455666666665432 11121212 2333555555556666677777777777633
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhh-----------HHHHHHHHHhCCChHHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSMP-FKPDESV-----------WGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
..++++.....++|.+|..+-++.| +.||+.. +.-.-.++.+.|+..+|..+++++
T Consensus 776 ---~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 776 ---LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ---HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1246677778888888888888774 3344321 111123455555555555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.011 Score=49.01 Aligned_cols=105 Identities=7% Similarity=-0.088 Sum_probs=71.9
Q ss_pred HHHccCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC
Q 007288 169 LVFNDMK-WKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS 247 (609)
Q Consensus 169 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 247 (609)
..+..+. ..+....-.+...+...|++++|..+|+-+...... +..-|..|...+-..|++++|...|....... +.
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~d 101 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-ID 101 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 3344444 444455556666677788888888888877664322 34445556666677788888888888877776 46
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007288 248 NLPVMNSILDMYCRFDCLSDANQYFDEM 275 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 275 (609)
|+..+-.+..++...|+.+.|.+.|+..
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777788888888888888877654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=56.18 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA-CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56667777777777888888888887542 2222333333332 33346666788888887442 345677777888888
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 461 GRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 8888888888888877 222333 47888888888888888888888888887774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.015 Score=59.81 Aligned_cols=139 Identities=15% Similarity=0.049 Sum_probs=101.6
Q ss_pred CCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC--------CHHHHHHHHHHhh
Q 007288 377 DRDLVTWTSMMIGYGAH-----GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAG--------LVDEGLKYFKSMN 442 (609)
Q Consensus 377 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--------~~~~a~~~~~~~~ 442 (609)
..+...|...+.+.... ++..+|..+|++..+ ..|+. ..+..+..++.... +...+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35778899988875432 237799999999998 46765 35555544443221 2234444444432
Q ss_pred hc-CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc
Q 007288 443 DY-NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 443 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 517 (609)
.. ....+...|..+.-.....|++++|...+++. ...|+...|..+..++...|+.++|.+.++++..++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 22 23345577877777777789999999999998 67788889999999999999999999999999999997664
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0039 Score=54.27 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=73.7
Q ss_pred HHHHHhc--CCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 007288 369 QKIFSEM--SDRDLVTWTSMMIGYGAH-----GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA------------- 428 (609)
Q Consensus 369 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 428 (609)
...|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 346667777777777643 66777777888888899999999999999887652
Q ss_pred ---CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 429 ---GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 429 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
.+.+-|++++++|...|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688999999999999999999999999866654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00028 Score=41.92 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=30.8
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 505 ALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 505 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
++++++++|+++..|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0096 Score=51.67 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD--RIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555556666666666666654321211 13455555556666666666666665543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0039 Score=54.28 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=72.0
Q ss_pred HHHHccC--CCCChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC------------
Q 007288 168 RLVFNDM--KWKNDVSWTTLITGYAHS-----GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG------------ 228 (609)
Q Consensus 168 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------------ 228 (609)
...|+.. ..++..+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|+..+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 346777788888777754 666667777888888899999999999998875422
Q ss_pred ----CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 229 ----WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 229 ----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345678888888888888888888888888766544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0042 Score=57.69 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC---cchHHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILS 523 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 523 (609)
.|...+..+.+.|++++|+..|+.. ...|+. ..+.-+..++...|+++.|...|+.+++..|++ +..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444556667766666665 223332 344455566777777777777777777766643 34445556
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 007288 524 NIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
.+|...|++++|..+++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777777777777777664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.25 Score=45.54 Aligned_cols=81 Identities=11% Similarity=-0.131 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-hH---HHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhh
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAF-TL---SSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVEN 151 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (609)
+...+-.....+...|++++|.+.|+.+...- |+.. .. -.+..++.+.+++++|...+++.++..+.....-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 33334445555677899999999999998853 3332 21 345567888999999999999999887655444555
Q ss_pred HHHHHHH
Q 007288 152 SLMDVYA 158 (609)
Q Consensus 152 ~ll~~~~ 158 (609)
..+.+.+
T Consensus 109 ~Y~~g~~ 115 (243)
T PRK10866 109 LYMRGLT 115 (243)
T ss_pred HHHHHHh
Confidence 5555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=47.04 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPL 488 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 488 (609)
+.|++++|+++|+.+..... -+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45666666666666644332 24555555666666666666666666666 334554444333
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.013 Score=55.54 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHhhHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR-AGRVKEAYELIKSM--PFKPDESVWGPLLGAC 492 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 492 (609)
.+|..+++.+.+.+..+.|..+|.+..+.+ ..+..+|-.....-.+ .++.+.|..+|+.. .+..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888898999999999999999997543 2345555555555333 56777799999988 3445778899999999
Q ss_pred HhCCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMM---GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...++.+.|..+|++++..-|.+. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998766433 58888888888999999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.023 Score=47.55 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=75.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
...-+...|++++|..+|.-+ -..| +..-|..|..++...++++.|...|..+..++++|+..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 1222 45557777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007288 534 EFAKFRKIMRG 544 (609)
Q Consensus 534 ~A~~~~~~m~~ 544 (609)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.065 Score=54.07 Aligned_cols=169 Identities=11% Similarity=0.139 Sum_probs=90.1
Q ss_pred HHHHHHHhcCC--hhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 184 TLITGYAHSGN--GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 184 ~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
..=.+|.+..+ +-+.+--+++|+++|-.|+..-. ...|+-.|.+.+|-++|.+ .|.+ |..+.+|..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTD 670 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTD 670 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHH
Confidence 33344444333 23344456677777777776543 3445667777777777643 2211 234445555
Q ss_pred cCCHHHHHHHHHhcCCC-------ChhHH-------HHHHHHHHhCC-chHHHH-------------HHHHhHHCCCCCC
Q 007288 262 FDCLSDANQYFDEMTEK-------DLITW-------NTIIAGYEKSG-SSECLN-------------MFSKMKSERFSPN 313 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~~-------~~~~~-------~~li~~~~~~~-~~~a~~-------------~~~~m~~~~~~p~ 313 (609)
...++.|.+++..-... ....| .+....+...| .++|.. +-+++- ..+
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~e 746 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAE 746 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhh
Confidence 55555555544332110 00000 11122233334 333333 222221 123
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD 377 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 377 (609)
..+...+...+-+...+..|.+||..|-+. ..+++++...++|.+|..+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 444544555555666777888888877543 4678888889999999998888875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=46.56 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=26.3
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCChHHHHHHHH
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKPN---MMGTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
.+.+...|++++|..++++.....|+ +......++.++...|++++|+..+-
T Consensus 45 astlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555555555555555554443 33333444455555555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.089 Score=47.15 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=62.9
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHhhHHHHH-----HHHH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM---PFKPDESVWGPLL-----GACK 493 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~-----~~~~ 493 (609)
+..+.-.|.+.-...++.+.++...+-++.....|+..-...|+.+.|...|++. .-+-|..+.+.++ ..+.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 3333334444444444444444443444444444444445555555555544432 0011222222222 2344
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
-++++..|...+.++...+|.++...+.-+-++.-.|+..+|++.++.|.+..
T Consensus 264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55566666666666666666666666665555556666666666666666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0032 Score=45.03 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCC-ChHHHHHHHHHHhccCC
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHR-LPNLGKLAALRVLDLKP 513 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 513 (609)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456666777777777777777777666 3334 3456666667777777 67777777777777766
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.024 Score=53.86 Aligned_cols=94 Identities=9% Similarity=-0.092 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHhC-----C-CCC--CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc------
Q 007288 452 IYGCVVDLLGRA-GRVKEAYELIKSM-----P-FKP--DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM------ 516 (609)
Q Consensus 452 ~~~~l~~~~~~~-g~~~~A~~~~~~~-----~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------ 516 (609)
.+..+...|... |++++|++.|++. . -.+ -..++..+...+.+.|++++|...++++....-++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444455566665 6667666666655 0 111 123344455667777777777777777655321111
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 517 -GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 517 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..+...+-++...|+...|.+.+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12334455566667777777777777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.56 Score=44.79 Aligned_cols=238 Identities=15% Similarity=0.174 Sum_probs=150.1
Q ss_pred chHHHHHHHHhHHCCCCCCHH--hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCF--TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
++.|.+-|+.|... |... -...+.-...+.|+.+.|.++-...-..- +.-.....+.+...+..|+|+.|++++
T Consensus 136 ~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 136 YEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 56666666666541 2211 12223333346677777777766655442 222445667778888888888888888
Q ss_pred HhcC-----CCCcc--hHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 373 SEMS-----DRDLV--TWTSMMIGYG---AHGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 373 ~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+.-. ++++. .-..|+.+-+ -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7654 23332 1122222211 12345666666665555 567765 3344457889999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
-+....| ..+.. ..+.+.|+. ++.-+++. .++|| ..+...+..+....|++..|..-.+.+....| ..
T Consensus 290 WK~ePHP--~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-re 362 (531)
T COG3898 290 WKAEPHP--DIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RE 362 (531)
T ss_pred HhcCCCh--HHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hh
Confidence 6655444 44322 233455553 33333222 34564 45555666888999999999999999999999 57
Q ss_pred chHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 007288 517 GTYIILSNIYAAE-GKWEEFAKFRKIMRGM 545 (609)
Q Consensus 517 ~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 545 (609)
..|..|+++-... |+-.++..++-+-.+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7888888887665 9999999998887764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.88 Score=46.81 Aligned_cols=200 Identities=10% Similarity=0.095 Sum_probs=104.9
Q ss_pred CCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh-CCC--------CCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCCh
Q 007288 109 NPNAFTLSSVLKACKGMKSLSNAALVHGMAIKE-GLE--------GSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179 (609)
Q Consensus 109 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~ 179 (609)
.|.+..|..+.......-.++.|+..|-+.... |++ .+...-.+=+.+| .| .+++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g-~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YG-EFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hc-chhHhhhhhhccchhhh
Confidence 456666666655544444455555444333221 111 0111111222222 35 88999998888877764
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN----PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSI 255 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 255 (609)
. |..+.+.|++-...++++. -|-..| ...++.+...++....+++|.+.|..-... ...
T Consensus 766 A-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 766 A-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred h-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 3 5566667777666665542 111111 235666666666667777777766543211 235
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHH
Q 007288 256 LDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334 (609)
Q Consensus 256 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 334 (609)
+.++.+..++++-+.+-..+++. ....-.+...+...| -++|.+.|-+--. | ...+..|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHH
Confidence 56666666666666666555543 233445556666666 6666655533211 1 12344555556665555
Q ss_pred HHHH
Q 007288 335 QVHA 338 (609)
Q Consensus 335 ~~~~ 338 (609)
++-+
T Consensus 899 elaq 902 (1189)
T KOG2041|consen 899 ELAQ 902 (1189)
T ss_pred HHHH
Confidence 5444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.045 Score=43.81 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC---ChhHHHHHHHHHH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMN--PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGS---NLPVMNSILDMYC 260 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~ 260 (609)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 4456667888888888888888776654 3345566677778888888888888777652 11 2223333444566
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 007288 261 RFDCLSDANQYFDEMTEKDLITWNTIIAGY 290 (609)
Q Consensus 261 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 290 (609)
..|+.++|++.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766554444444444444444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.82 Score=46.39 Aligned_cols=408 Identities=13% Similarity=0.085 Sum_probs=219.3
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFT-LSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLM 154 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 154 (609)
+-..|..+|.---.....+.+..++..+... .|-..- |.....-=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666666554455556666667766643 343332 233333335667777788888877754 445666777777
Q ss_pred HHHHhcCCCHHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHH---
Q 007288 155 DVYATCCISMDNARLVFNDMKW------KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA--- 225 (609)
Q Consensus 155 ~~~~~~g~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--- 225 (609)
..+....++.+.....|+.... .+...|...|.--..++++.....+|+..++. ....|+.....+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6666655577777777776654 25667888888888888888888888888764 1222222222211
Q ss_pred cc------CCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHH
Q 007288 226 ST------GWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD-CLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSEC 298 (609)
Q Consensus 226 ~~------g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a 298 (609)
.. ...+++.++-...... ......+ ..+......+....+... .+++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~-------------l~~~ 250 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKS-------------LTEE 250 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccch-------------hhHH
Confidence 11 1111111111111110 0000000 011111111111111000 1111
Q ss_pred HHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 299 LNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR-------GLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 299 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
.....+... ..-.++............++.-++. -..++..+|+..+.--.+.|+.+.+.-+
T Consensus 251 ~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l 319 (577)
T KOG1258|consen 251 KTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFIL 319 (577)
T ss_pred HHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHH
Confidence 111100000 0000000111111111112211111 1123455677777777788888888888
Q ss_pred HHhcCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC
Q 007288 372 FSEMSDRDL---VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR--PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNV 446 (609)
Q Consensus 372 ~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 446 (609)
|+.+.-|-. ..|-..+.-....|+.+-|..++....+--++ |....+.+.+ +...|+++.|..+++.....-
T Consensus 320 ~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 320 FERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC-
Confidence 888875532 34555555555568888888888777664332 2222333332 445779999999999995533
Q ss_pred CCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHhhHHHHH-----HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 447 NPN-KEIYGCVVDLLGRAGRVKEAY---ELIKSM-PFKPDESVWGPLL-----GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 447 ~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
|+ ..+-..-+....+.|..+.+. +++... +.+-+......+. -.+.-.++.+.|..++.++.+..|++.
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 33 333334456667888888887 555444 2222333333333 224567789999999999999999999
Q ss_pred chHHHHHHHHHhcCC
Q 007288 517 GTYIILSNIYAAEGK 531 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~ 531 (609)
..|..+++.....+.
T Consensus 476 ~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 476 VLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999988887763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0073 Score=59.00 Aligned_cols=65 Identities=12% Similarity=-0.135 Sum_probs=46.1
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+...|+.+..+|.+.|++++|+..++++++++|++.. +|..++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777777776653 3777777777777777777777777664
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.015 Score=55.47 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=58.7
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..++..|..++.+.+.+..|+....++++++|+|......-+.+|...|+++.|+..|+++.+..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 446667778889999999999999999999999999999999999999999999999999988544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.32 Score=47.17 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------CcchHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMSDR-------DLVTWTSMMIGYGA---HGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
.++-.|....+++...++.+.+... ....--....++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777788888888777753 11112223445556 7888888888888666656777788877776
Q ss_pred HHhc---------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C---C---CCC
Q 007288 424 ACSH---------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK----EAYELI---KS-M---P---FKP 480 (609)
Q Consensus 424 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---~---~~p 480 (609)
.|-. ....++|+..|.+.-+ +.|+...--.++..+...|... +..++- .. . + -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6532 2246777777776632 2233322222222333333311 222222 11 1 1 224
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
+--.+.+++.++.-.|+.++|.+.++++.++.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 55566788899999999999999999999988753
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.16 Score=45.62 Aligned_cols=138 Identities=9% Similarity=0.071 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHH-----HHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALA-----NAL 355 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 355 (609)
.-+.++..+...+ +.-.+..+++.++...+-++.....+.+...+.|+.+.|...|++..+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445556666666 7777888888888766667778888888888999999999999987765433333333 333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAV 421 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (609)
...|.-.+++..|...|.++.. .|+...|.-.-+..-.|+...|++.++.|... .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4455667788888888888774 34455555555556668888899998888874 4555444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.014 Score=55.38 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh----hhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSM----NDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-------P-FKPDES 483 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 483 (609)
.|..|...|.-.|+++.|+...+.- .+.|-+. ....+..+.+++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667788777665432 2333211 1335566777777778888887777654 2 112334
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhcc------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDL------KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+..+|.+.|.-...+++|+..+.+=+.+ .......+.+|+++|...|..++|..+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556666666666777777766654332 12345677888888888888888877765554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.1 Score=46.16 Aligned_cols=192 Identities=7% Similarity=-0.026 Sum_probs=102.0
Q ss_pred cCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCC--------CcchHHHHHHHhhCCCChH
Q 007288 59 EGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVR-NEVNP--------NAFTLSSVLKACKGMKSLS 129 (609)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p--------~~~t~~~ll~~~~~~~~~~ 129 (609)
.=.+++|.++.+.- |.+..|..+.......-.++-|...|-+... .|++. +...-..=+ -+--|+++
T Consensus 676 ~vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~fe 751 (1189)
T KOG2041|consen 676 AVGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFE 751 (1189)
T ss_pred HhchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchh
Confidence 33477777776664 4455687777766665566666666655543 23321 000011111 23347899
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-----ChhhHHHHHHHHHhcCChhhHHHHHHH
Q 007288 130 NAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-----NDVSWTTLITGYAHSGNGYGGLGVFKE 204 (609)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~ 204 (609)
+|++++-.|.+..+ -+..+.+.| ++-...++++.-... -..+|+.+...++....+++|.+.|..
T Consensus 752 eaek~yld~drrDL---------Aielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDL---------AIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred Hhhhhhhccchhhh---------hHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988877765432 356666777 777777777654322 234577777777777777777766654
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007288 205 MLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK 278 (609)
Q Consensus 205 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 278 (609)
-... ...+.++.+..++++-+.+.+ .++.+....-.+..++.+.|.-++|.+.|-+...|
T Consensus 822 ~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 822 CGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred ccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 3211 112222333233332222221 13444445555555555555555555555444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.068 Score=50.97 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh----hhcCC-CCChh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMV----KSGVR-PDRIVFMAVLTACSHAGLVDEGLKYFKSM----NDYNV-NPNKE 451 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~ 451 (609)
.|..|...|.-.|+++.|+..-+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+.. ++.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555556666778888776543322 22322 12347777888888888888888888765 22221 22344
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM--------PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
+..+|.+.|.-...+++|+.++.+- ...-....+.+|..++...|..++|....+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888877654 1223556777888889889999988888777655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.035 Score=51.61 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLL 489 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 489 (609)
.|...+....+.|++++|+..|+.+.+...... ...+--+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777755332111 235556777777888888888877776 21222 33444455
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667788888999999998888888543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.74 Score=44.41 Aligned_cols=269 Identities=10% Similarity=0.003 Sum_probs=136.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
-..+.+..++.+|+..+...++.... +..-|..-...+...|+++.+.--.+.-++.. +-....+.-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 34556667777888888887776433 23334444444444555555543333333221 11122233334444444555
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCC-CCCHHhHHHHHHH-HHhhccHHHHHHHHHHHHHh
Q 007288 266 SDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERF-SPNCFTFTSIIAA-CATLAALSCGQQVHAGIVRR 343 (609)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 343 (609)
.+|...++. ...+ ....++..++....... +|...++..+-.- +.-.|+.+.|.++-..+.+.
T Consensus 134 i~A~~~~~~-----~~~~----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 134 IEAEEKLKS-----KQAY----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred HHHHHHhhh-----hhhh----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 555554441 1111 00112222222222111 2333444333222 24566777776666665554
Q ss_pred CCCCchhHHHHHHH--HHHhcCCHHHHHHHHHhcCCCCcc---------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 344 GLDGNLALANALID--MYAKCGNISDSQKIFSEMSDRDLV---------------TWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 344 ~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
.- ...+..+++ ++--.++.+.|...|++...-++. .|..-..-..+.|++..|.+.|.+.
T Consensus 199 d~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 199 DA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred cc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 31 112222222 223356677777777776642221 1122223345778888888888888
Q ss_pred HHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 407 VKS---GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 407 ~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+.. ..+|+...|.....+..+.|+..+|+.--+...+.+ +. ...|..-..++.-.++|++|.+-+++.
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 762 345566677777777788888888888777765532 11 122222334455567788887777766
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.4 Score=40.77 Aligned_cols=120 Identities=14% Similarity=0.184 Sum_probs=55.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG---VRPDRIVFM 419 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~ 419 (609)
|++..--.|.++..+.|+..+|...|++... .|....-.+.++....+++..|...++++-+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 4444444455555555555555555554442 233444444444445555555555555554421 1222 223
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
.+.+.+...|++..|...|+.....- |+...--.....+.+.|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 34445555555555555555554433 23222222334445555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0043 Score=39.56 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
.+|..+..++...|++++|+..++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778889999999999999999999999998888877764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=42.89 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=43.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
..|.+.+++++|+++++++ ...| +...|.....++.+.|++++|...++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567778888888888777 4444 34455556677888888888888888888888865443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0055 Score=45.09 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhcc----CC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDL----KP---NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+++.+...+...|++++|+..+++++++ ++ .-..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777788888888888888887653 22 2255788899999999999999999988754
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.6 Score=45.46 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACK 493 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 493 (609)
...+.+--+.-+...|...+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... .+..|.-+..+|.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 33455555666777888888888877653 3688888888889999999998888877753 2566777888999
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
+.|+.++|...+-+.-. +.-.+.+|.+.|++.+|.+.--+-
T Consensus 756 ~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 99999988877654322 226788889999998888764433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.1 Score=42.99 Aligned_cols=108 Identities=13% Similarity=0.036 Sum_probs=61.7
Q ss_pred CHHHHHHHHccCC---CCChhhHHHHHHHHH--hcCChhhHHHHHHHHHHCCCCCCHhhH----HHHHHHHHccCCchhH
Q 007288 163 SMDNARLVFNDMK---WKNDVSWTTLITGYA--HSGNGYGGLGVFKEMLLEGVEMNPYSF----SIAVRACASTGWVSFG 233 (609)
Q Consensus 163 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~a 233 (609)
+-..|.+.-.+.. ..|....-.|+.+.. -.|+++.|.+-|+.|.. |+.|- ..|.-..-+.|..+.|
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 5555554443322 224443444443332 35777788888877765 23332 2333333466777777
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 234 KLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
.+.-+..-... +.-...+...+...|..|+++.|+++.+.-.
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 77666655442 3335566777777888888888888777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.2 Score=46.34 Aligned_cols=103 Identities=19% Similarity=0.074 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCCHhhHHHH
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG---RVKEAYELIKSM-PFKPDESVWGPL 488 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~~~~~~l 488 (609)
-|...|..|...|...|+++.|...|....+.. .++...+..+..++.... ...++.++|+++ ...|+...-..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 355688888888888888888888888885543 245666666666665433 355678888877 555655444444
Q ss_pred H-HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 489 L-GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 489 ~-~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
+ ..+...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 4 678888888888888888888877543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.025 Score=47.66 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcccC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG-----MGSKKEV 551 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 551 (609)
....++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.+.|+++.+ .|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4455667788999999999999999999999999999999999999999999999999864 4665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.08 Score=42.82 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHH
Q 007288 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 410 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 460 (609)
...|+..+..+++.+|+..+++..|+++.+.. ...+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35566667777777777777777777777766 5566666666666666443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.006 Score=48.52 Aligned_cols=45 Identities=40% Similarity=0.725 Sum_probs=38.8
Q ss_pred ceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHcCcccCcccccccCCCC
Q 007288 552 GMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNETAYEPDIDCLIHDLEGE 608 (609)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~ 608 (609)
+++|.+. |.|++|+.+||+. ++..++...||.|++..+.++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e 46 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEE 46 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhh
Confidence 4578765 8999999999998 5678888999999999999988865
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.5 Score=42.37 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=71.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVR-P-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
....+...|++.+|.+.|+.+...-.. | -....-.++.++.+.|+++.|...++...+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344556677777777777777764211 1 11245556667777777777777777774433221111222222222111
Q ss_pred CCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-----------------hHHHHHHHH
Q 007288 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-----------------TYIILSNIY 526 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~~ 526 (609)
....... ......+....|...++.+++..|++.. --..++..|
T Consensus 91 ~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0011122334455555555555554332 223478889
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 007288 527 AAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~ 545 (609)
.+.|.+..|..-++.+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999999999874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.49 Score=42.40 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=91.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 007288 356 IDMYAKCGNISDSQKIFSEMSD--RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR--IVFMAVLTACSH 427 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 427 (609)
...+...|++++|...|+.+.. |+. ...-.++.++.+.|+++.|...++++++. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3345566777777777777763 221 23445667788888888888888887764 2332 222222222221
Q ss_pred cC-------------CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 007288 428 AG-------------LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE 494 (609)
Q Consensus 428 ~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 494 (609)
.. ...+|.. .+..++.-|=.+....+|...+..+...-. ..--.+...|.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la-~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLA-EHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHC
T ss_pred HHhCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11 1122222 344455555555556666555554410000 001123466889
Q ss_pred CCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 536 (609)
.|.+..|..-++.+++..|+... ....++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999986543 4566888999999888554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.013 Score=43.14 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555554
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.15 Score=42.87 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-----hhcCCCCChhHH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-----NDYNVNPNKEIY 453 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~ 453 (609)
...++..+...|++++|..+++.+.... +-+...|..++.++...|+..+|.+.|+.+ .+.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445566667778888888887777742 335567777788888888888887777765 245777766653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.84 Score=36.47 Aligned_cols=141 Identities=14% Similarity=0.045 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.. |--.|. ..+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHH
Confidence 34567888888888888763 34556666665555555555555555554 222222 234555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..-+-.++ .+.......+.....+|+-+.-..++..+.+.+..++....-++.+|.+.|+..++.+++.+..++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55555543 244455667788889999999889998887654457889999999999999999999999999999984
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.7 Score=39.51 Aligned_cols=197 Identities=18% Similarity=0.166 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD-----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
...+......+...+.+..+...+..... .....+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566666667777776666665532 2334455555666666777777777777766433321 12222222
Q ss_pred -HHhccCCHHHHHHHHHHhhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HhhHHHHHHHHHhCCC
Q 007288 424 -ACSHAGLVDEGLKYFKSMNDYNV--NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD--ESVWGPLLGACKEHRL 497 (609)
Q Consensus 424 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 497 (609)
.+...|+++.|...+........ ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56777788888888877744221 122333344444456677888888777776 33333 4566666677777778
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
++.|...+.......|.....+..+...+...|.++++...+.+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877645566666666666677888887777776643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.36 Score=39.53 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=58.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHh
Q 007288 457 VDLLGRAGRVKEAYELIKSM----PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAA 528 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 528 (609)
.....+.|++++|.+.|+.+ +..| ....-..|+.++.+.+++++|...+++.+++.|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34445778888888888877 3222 2344556678888888888888888888888885443 33334444444
Q ss_pred cCC---------------hHHHHHHHHHHHhC
Q 007288 529 EGK---------------WEEFAKFRKIMRGM 545 (609)
Q Consensus 529 ~g~---------------~~~A~~~~~~m~~~ 545 (609)
... ..+|..-|++++++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 55666667766654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.27 Score=47.34 Aligned_cols=95 Identities=15% Similarity=-0.003 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
.+++.+.-++.+.+++.+|++..++. ... +|....-.=..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45666788899999999999998887 333 4566666667899999999999999999999999998888888888777
Q ss_pred cCChHHH-HHHHHHHHhC
Q 007288 529 EGKWEEF-AKFRKIMRGM 545 (609)
Q Consensus 529 ~g~~~~A-~~~~~~m~~~ 545 (609)
...+++. .++|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666555 7788888653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.1 Score=51.35 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh----hHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES----VWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444444455555555544443 3344322 2444444555555555555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.2 Score=44.30 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 395 HGKEAIELFDEMVK-SGVRPDRI-VFMAVLTACSH---------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 395 ~~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..+.|+.+|.+... +.+.|+.. .|..+..++.. ..+..+|.++-++..+.+ +.|......+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34567778888772 23566543 44444333322 234566777777777766 34777777788877888
Q ss_pred CCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCChHHHHHHH
Q 007288 464 GRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG--TYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 464 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|.... .....++.|...+ .++|+.++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8899999999988 566753 45555556677889999999999999999995433 3333444666554 57777776
Q ss_pred HH
Q 007288 540 KI 541 (609)
Q Consensus 540 ~~ 541 (609)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 44
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=46.16 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=80.7
Q ss_pred HHhhccCC--CCCcccHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC-----------
Q 007288 66 RTLFDEMP--ERDVVSWTVMIAGYTS-----FNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS----------- 127 (609)
Q Consensus 66 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------- 127 (609)
.+.|.... ++|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34555555 5677788888887754 35677777888999999999999999999998765432
Q ss_pred -----hHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccC
Q 007288 128 -----LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDM 174 (609)
Q Consensus 128 -----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~ 174 (609)
-+-+.+++++|..+|+-||..+-..|+.++.+.+--..+..++.-.|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23467889999999999999999999999988762233444444344
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.20 E-value=3.5 Score=40.48 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=98.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhH-HHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEI-YGCVV 457 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 457 (609)
...|...+....+....+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... .||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567777887788888889999999999888 66777888888886654 6778888888765331 234433 34566
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 458 DLLGRAGRVKEAYELIKSM--PFKPD--ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 7778888988899888854 12222 567888888888888888888888888888883
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.4 Score=36.64 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=19.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Q 007288 117 SVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC 160 (609)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 160 (609)
.++..+...+.......+++.+.+.+. .+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 334444444444444444444444432 3444445555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.1 Score=39.71 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=22.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
...|++.+|..+|....... .-+...-..+..+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34445555555555444421 111233334444445555555555555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.3 Score=41.48 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSG---VRPDRIVFMAVLTACSH---AGLVDEGLKYFKSMNDYNVNPNKEIYGC 455 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (609)
+...++-+|....+++..+++++.+.... +.-....--...-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33456667999999999999999998742 11111222234445666 8999999999999655556778888887
Q ss_pred HHHHHh----h-----cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCC-hH---HHHHHH----HHHhc---cCC-
Q 007288 456 VVDLLG----R-----AGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRL-PN---LGKLAA----LRVLD---LKP- 513 (609)
Q Consensus 456 l~~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~---~~p- 513 (609)
+...|- . ....++|++.|.+. ...|+..+=-.+...+...|. .+ +...+. ..+.+ ..+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 776652 2 22477888888877 555654332222222222222 22 222222 11111 122
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
.+--.+..++.++.-.|+++.|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23334556888999999999999999999875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.096 Score=44.90 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC------HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKPD------ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 530 (609)
+-+.+.|++++|..-|.+. ..-|. .+.|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3445677777777766655 11121 2223333355778888888888888888888877778888888888888
Q ss_pred ChHHHHHHHHHHHhCCC
Q 007288 531 KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 531 ~~~~A~~~~~~m~~~~~ 547 (609)
++++|++-|+++.+..+
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 88888888888877544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.52 Score=44.50 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=23.0
Q ss_pred HHHhCCChHHHHHHHHHHhcc--CCCCc----chHHHHHHHHHhcCChHHHHHHHHH
Q 007288 491 ACKEHRLPNLGKLAALRVLDL--KPNMM----GTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
+++..|..-.|.+..+++.++ ...|. .....++++|...|+.+.|..-|+.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 345555555555555544331 11122 2223355555555555555544443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.6 Score=40.45 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=89.7
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHH---HHHHHHhCCChH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGP---LLGACKEHRLPN 499 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 499 (609)
......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..++..-...-+.. -+..+.+..+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999998654433 356666789999999999999999999975544444444 233344444444
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 500 LGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+... ++.-...+|+|...-..++..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3333 233455689999999999999999999999999887777653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.22 Score=45.18 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=65.0
Q ss_pred HHHHHccCC--CCChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-----------
Q 007288 167 ARLVFNDMK--WKNDVSWTTLITGYAHS-----GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTG----------- 228 (609)
Q Consensus 167 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 228 (609)
.+..|.... ++|-.+|-+.+..+... +.++=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 56778888888777654 556666777888999999999999999998875543
Q ss_pred -----CchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 007288 229 -----WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFD 263 (609)
Q Consensus 229 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 263 (609)
+-+-+..++++|..+|+-||-.+-..+++++++.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12234556666666666666655555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.57 Score=46.46 Aligned_cols=150 Identities=12% Similarity=0.026 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+|.-.-+..+...-++.-++..+ +.||..+.-.++ +-.......++.+++++..+.|-. .+..- ......|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc
Confidence 344444566677777777777776 567665333332 223455678888888887554411 11000 0001111
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 465 RVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN--MMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 465 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
. ..+.+.+-..+|-...-..|..++.+.|+.++|.+.++.+.+..|. +......|+++|...+.+.++..++.+-
T Consensus 245 ~---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 H---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred c---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1 1111222122334445556777888889999999999988877663 4567778889999999999998888886
Q ss_pred HhC
Q 007288 543 RGM 545 (609)
Q Consensus 543 ~~~ 545 (609)
-+.
T Consensus 322 dDi 324 (539)
T PF04184_consen 322 DDI 324 (539)
T ss_pred ccc
Confidence 443
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.31 Score=44.47 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC---CcchHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-------PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN---MMGTYII 521 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~ 521 (609)
.|+.-++.+ +.|++.+|...|... ...|+..- -|..++...|+++.|...|..+.+-.|+ .+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344443333 455566665555544 12222222 2456666666666666666666665443 3445666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 522 LSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
|+....+.|+.++|..+|+++.++-+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 66666777777777777777666433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.9 Score=35.81 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..++..+...+........++.+...+ ..+...++.++..|++.+ ..+....++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555666666666666666655 245556666666666543 2333333331 01222233355666666
Q ss_pred CCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhC-CChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 464 GRVKEAYELIKSMPFKPDESVWGPLLGACKEH-RLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+.++++.-++.+++. +...+..+... ++.+.|.+.+.+ +.++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666666653 22223333333 566666665554 223445555554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.8 Score=37.58 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--cchHHHHHHHHHhc
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRD--LVTWTSMMIGYGAH 393 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 393 (609)
.|.....++....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+-+ +..|+.....|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444455666667777777766555431 111111111 1233444555555554322 23455556667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh---cC--CCCChhHHHHHHHHHhhcCCHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMND---YN--VNPNKEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
|.++-|-..+++.-+ ..+..++++|+++|++... .+ ...-...+......|.+..++++
T Consensus 105 GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 776666666555443 1223344555555554411 11 01123345556667777778877
Q ss_pred HHHHHHhCC-------CCCCH-hhHHHHHHHHHhCCChHHHHHHHHHHhc----cCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 469 AYELIKSMP-------FKPDE-SVWGPLLGACKEHRLPNLGKLAALRVLD----LKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 469 A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
|-..+.+-+ .-|+. ..+.+.|-.+....++..|+..++..-. ..|.+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 765554431 11222 2344555556667788888888887544 3566677888888886 456777766
Q ss_pred HHH
Q 007288 537 KFR 539 (609)
Q Consensus 537 ~~~ 539 (609)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=1 Score=37.84 Aligned_cols=87 Identities=14% Similarity=0.012 Sum_probs=66.1
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHhhHHHHHHHHHhCCChHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP-F-KPDESVWGPLLGACKEHRLPNL 500 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~ 500 (609)
--+-..|++++|..+|+-+.-.++ .+..-+..|..++-..+++++|+..|.... . .-|+..+-....++...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345578999999999998855553 356667778888888899999999887761 1 2244455567788889999999
Q ss_pred HHHHHHHHhc
Q 007288 501 GKLAALRVLD 510 (609)
Q Consensus 501 a~~~~~~~~~ 510 (609)
|+..|+.+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998888
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.6 Score=37.79 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh--cCCCCcchHHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSE--MSDRDLVTWTSMMIGY 390 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~ 390 (609)
|..++..++.++++.|+++....+.+..- |+..+... ..+. +.. -..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 45567777777777777777776665432 22222100 0000 000 1136778888899999
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 007288 391 GAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 426 (609)
+..|++..|+++++...+ -+++.+..+|..|++=+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999988876 467777788888886443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.46 E-value=5.5 Score=39.26 Aligned_cols=125 Identities=17% Similarity=0.230 Sum_probs=71.5
Q ss_pred hcCC-HHHHHHHHHhcCC---CCcchHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH-
Q 007288 361 KCGN-ISDSQKIFSEMSD---RDLVTWTSMM----IGYGA---HGHGKEAIELFDEMVKSGVRPDRI----VFMAVLTA- 424 (609)
Q Consensus 361 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~- 424 (609)
+.|. -++|.++++.+.+ -|...-|.+. .+|.+ ...+.+-+.+-+-..+.|+.|-.. .-+.|..+
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3444 6677777777663 2333222221 22222 123344444444455567666433 33333332
Q ss_pred -HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHH
Q 007288 425 -CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLL 489 (609)
Q Consensus 425 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 489 (609)
+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++..+| |+...+++-+
T Consensus 471 yLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskv 532 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKV 532 (549)
T ss_pred HHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHH
Confidence 4456777777766665554 56788888888777788888888888888775 4555555433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.1 Score=37.05 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMG---TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.-|.+.|.+..|..-++.+++.-|+... .+..+..+|...|..++|...-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5688999999999999999998775444 455688899999999999988665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.25 E-value=11 Score=41.93 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
.++.--+.|.+.+|..++..=.+.-...|.+...-+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333334445555554444322221222333333334445566666555544322 12345566677777777
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
+.+..++..-. .--..+-..|+.-+...++.-+|-++..+....|.. .+..+++...+++|.++....
T Consensus 985 l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 77776652210 001112245666777777777777777666433321 223344444455555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.51 Score=37.51 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=52.3
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCh
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM----MGTYIILSNIYAAEGKW 532 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 532 (609)
++...|+.+.|++.|.+. ..-| ....||.-..+++-+|+.++|+.-+++++++.-+. ...|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445566666666666554 2222 44556666666666666666666666666643221 12445566666667777
Q ss_pred HHHHHHHHHHHhCCC
Q 007288 533 EEFAKFRKIMRGMGS 547 (609)
Q Consensus 533 ~~A~~~~~~m~~~~~ 547 (609)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777766666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.00 E-value=3 Score=44.20 Aligned_cols=178 Identities=10% Similarity=0.008 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNL--ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 393 (609)
+...-+..+.+..-++.|..+-+. .+..++. .......+-+.+.|++++|...|-+...--..+ .+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhcCH
Confidence 344455556666666666555432 2222221 122223333445777777776665544211111 244555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELI 473 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
.+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.- ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 5666666667777777654 34444566777777777777666655443 1211 111334556666667777776666
Q ss_pred HhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHH
Q 007288 474 KSMPFKPDESVWGPLLGACKEHRLPNLGKLAALR 507 (609)
Q Consensus 474 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 507 (609)
.+.+.. ... +--.+...+++++|.+.++.
T Consensus 487 ~k~~~h--e~v---l~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKKH--EWV---LDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHhccC--HHH---HHHHHHHhcCHHHHHHHHhc
Confidence 655432 222 22234456677777766553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.1 Score=30.79 Aligned_cols=31 Identities=19% Similarity=0.036 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+|..+..++...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666777777777777777766664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.15 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.|..+..++...|++++|++.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445556666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.89 Score=42.53 Aligned_cols=159 Identities=13% Similarity=-0.017 Sum_probs=113.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH----HHHHHHHhhcCCH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY----GCVVDLLGRAGRV 466 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 466 (609)
...|+..+|-..++++.+. .+.|...+...=.+|...|+...-...+++.... ..+|...| ..+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888889998875 5566677777778899999988888888888432 12444333 3444566789999
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 007288 467 KEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN----MMGTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 467 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
++|.+.-++. .++| |.-.-.++...+...++.+++++...+-...-.. -..-|...+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 5554 4455566677788899999999987776543321 13345556777778899999999998
Q ss_pred HHHhCCCcccC
Q 007288 541 IMRGMGSKKEV 551 (609)
Q Consensus 541 ~m~~~~~~~~~ 551 (609)
+=+-+...++.
T Consensus 272 ~ei~k~l~k~D 282 (491)
T KOG2610|consen 272 REIWKRLEKDD 282 (491)
T ss_pred HHHHHHhhccc
Confidence 87654444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.58 E-value=8.2 Score=38.05 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcC-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhH-HHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYN-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVW-GPLLGAC 492 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~ 492 (609)
..|...+.+..+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+-- ..-||...| +..+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 467778888888888999999999998888 6788899999998775 68888999999764 333555444 4556777
Q ss_pred HhCCChHHHHHHHHHHhccCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKP--NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..-++-+.|..+|+..++.-. .-...|..+++--..-|+.+.+..+=++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 888999999999997655221 124577777777777788877777666665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.4 Score=42.94 Aligned_cols=158 Identities=10% Similarity=-0.003 Sum_probs=104.1
Q ss_pred HHHcCCChhHHHHHHH--HHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 007288 86 GYTSFNCHNQAWTVFV--EMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS 163 (609)
Q Consensus 86 ~~~~~~~~~~a~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 163 (609)
...-.++++.+.++.+ ++.. .+ +....+.++.-+-+.|..+.|.++...- ..-.....++| +
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg-~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLG-N 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT--
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcC-C
Confidence 3355677777666654 2221 11 2445677777788888888887664322 23456677788 9
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 164 MDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 164 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
++.|.++.+... +...|..|.....++|+++-|.+.|.+..+ |..|+-.+...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999888876 666899999999999999999999988643 456666777888888888888877776
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 244 GFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 244 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
|- +|....++.-.|+.++..+++.+..
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 61 4555566666788888888877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.8 Score=41.39 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-CCc---------chHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD-RDL---------VTWTSMMIGYGA----HGHGKEAIELFDEMVKSGVRPDRIVF 418 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (609)
..+++..+=.|+-+.+++.+....+ .++ ..|+.++..++. ..+.+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 3455555556666666666665543 111 123333333322 23445555555555542 3444433
Q ss_pred HHHH-HHHhccCCHHHHHHHHHHh
Q 007288 419 MAVL-TACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 419 ~~ll-~~~~~~~~~~~a~~~~~~~ 441 (609)
...- +.+...|++++|++.|+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Confidence 3222 3344455555555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.97 Score=44.79 Aligned_cols=118 Identities=9% Similarity=0.042 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHhh-hcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCC
Q 007288 430 LVDEGLKYFKSMN-DYNVNPN-KEIYGCVVDLLGR---------AGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHR 496 (609)
Q Consensus 430 ~~~~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 496 (609)
..+.|..+|.+.. .....|+ ...|..+..++.. .....+|.++-++. ...| |......+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888885 3334555 3334333333221 22344556666555 4444 5666666667777778
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++..+..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999999665433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.7 Score=41.61 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHhcCChhhHHHHHH-HHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 187 TGYAHSGNGYGGLGVFK-EMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 187 ~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
....-.++++.+.++.. .-.-..++ ..-.+.+++-+-+.|..+.|.++...-. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 33444566666655554 11111111 3335566666667777777766643321 234555677777
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
+.|.++.++.. +...|..|.....+.| .+-|.+.|.+..+ +..++-.+.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77777665554 4556777777777777 7777777766542 3445555555666666666665555544
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFSE 374 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (609)
- ++....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23344444455666665555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.19 Score=30.18 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.96 Score=41.38 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=29.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 456 VVDLLGRAGRVKEAYELIKSM----PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
|..++...|++++|..+|..+ |..|. +..+-.|..+..+.|+.++|...++++++-.|+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 445555555555555554444 22221 2333344445555566666666666666655543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.1 Score=34.21 Aligned_cols=114 Identities=10% Similarity=-0.006 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 388 IGYGAHGHGKEAIELFDEMVKSGV--RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
....+.|++++|.+.|+.+..+-. .-....-..|+.++.+.+++++|...+++.++........-|...+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 344567888888888888776411 112235666777888888888888888888765544333445555555554443
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 466 VKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 466 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
.+.++.-+- +..- ..+....|...|+.+++..|++.
T Consensus 98 ~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 332222211 1111 12235578888888888888653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=10 Score=38.01 Aligned_cols=193 Identities=8% Similarity=0.017 Sum_probs=100.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLT 423 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 423 (609)
..|.....+++..++..-++.-.+.+-.+|.. .+-..|..++++|..+ ..+.-..+|+++.+..+ |...+.--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 34445555566666666666666666555552 3445666667777666 44666667776666432 3333333232
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHh
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNP-----NKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPDESVWGPLLGACKE 494 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 494 (609)
.+...++.+.+..+|.++...=++- -..+|..|.... ..+.+..+.+..++ +...-.+.+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 2333366666666666663322210 122344443322 23455555555444 222333444444455666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh--------------------cCChHHHHHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA--------------------EGKWEEFAKFRKIMR 543 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~m~ 543 (609)
..++++|++++..+++.+..|.-+-..++.-+.. ..++-++..-|+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 7777777777776666655444444444444333 455666666666664
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.08 E-value=9.7 Score=37.49 Aligned_cols=149 Identities=9% Similarity=-0.009 Sum_probs=73.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--hhHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP---DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEIY 453 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 453 (609)
...+|..+...+.+.|.++.|...+.++...+... .......-.+.+-..|+..+|+..++...+..+..+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34566667777777777777777777776633111 222333334445566777777777776644222211 1111
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHh------CCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 454 GCVVDLLGRAGRVKEAYEL-IKSMPFKPDESVWGPLLGACKE------HRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
..+...+.. ..+..... ........-...+..+..-+.. .++.+.+...|..+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000001122222222223 37788888999999999997777777777766
Q ss_pred Hhc
Q 007288 527 AAE 529 (609)
Q Consensus 527 ~~~ 529 (609)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.88 E-value=3.9 Score=42.05 Aligned_cols=127 Identities=11% Similarity=0.128 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCCch-----hHHHHHHHHHHh----cCCHHHHHHHHHhcCC--CCcchHH
Q 007288 317 FTSIIAACATLAALSCGQQVHAGIVRRG-LDGNL-----ALANALIDMYAK----CGNISDSQKIFSEMSD--RDLVTWT 384 (609)
Q Consensus 317 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~--~~~~~~~ 384 (609)
+..++....=.||-+.+.+.+....+.+ +.-.. -.|...+..++- ....+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455666666678888887777665532 22111 123333333322 4566778888887775 6665554
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 385 SM-MIGYGAHGHGKEAIELFDEMVKSG--V-RPDRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 385 ~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
-. ...+...|+.++|++.|++..... . +.....+--+...+.-..++++|...|..+.+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 43 234566788888888888655311 0 11222444455556666777777777777744
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.9 Score=41.05 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=38.2
Q ss_pred hHHHHHHHHhHHCCCCCCH--HhHHHHHHHHHhhcc--HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 296 SECLNMFSKMKSERFSPNC--FTFTSIIAACATLAA--LSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 296 ~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
+.+...|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 5566777777777765533 333444444332222 4577788888888888877777665543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.79 E-value=3.2 Score=35.31 Aligned_cols=136 Identities=7% Similarity=-0.071 Sum_probs=78.7
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC
Q 007288 97 WTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW 176 (609)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~ 176 (609)
.+.++.+.+.++.|+...+..++..+.+.|++.. +.+++..++-+|.......+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHH
Confidence 4555666677888888888888888888887654 4455566665555544443322222 22223333233332
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 007288 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKH 243 (609)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 243 (609)
+=...+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..+++.....
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32335667777888888888888887664221 2223344556666666665555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.56 Score=43.53 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
++..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455566667777777777777777777777777777777777777777777777777754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.35 Score=38.43 Aligned_cols=55 Identities=16% Similarity=-0.086 Sum_probs=51.8
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
-+....|+.+.|++.|.+++.+-|..+..|+.-+.+|.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999998877
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.64 E-value=9.6 Score=36.30 Aligned_cols=62 Identities=8% Similarity=0.161 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 397 KEAIELFDEMVKSGVRPDRI--VFMAVLTACSHAGL--VDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 56677788888877766543 33444433332222 3467788888888888888777765543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=7.6 Score=35.00 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=132.0
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-chHHHHHH-
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRR-GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDL-VTWTSMMI- 388 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~- 388 (609)
...+......+...+....+...+...... ........+..+...+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555556666666666666555442 2334445555566666667777777777777664 221 22333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRP----DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..............+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67888999999999998865 333 233444445556778899999999998866432214677778888888889
Q ss_pred CHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 465 RVKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 465 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988877 44454 344555555555777899999999999998885
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.19 E-value=10 Score=38.10 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=61.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCC--HhhHHHHHHHHH
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVN-PNKEIYGCVVDLLGRAGRVKEAYELIKSMP-F-KPD--ESVWGPLLGACK 493 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~~~~ 493 (609)
..+..++.+.|+.++|++.+++|.+.... -+..+...|+.+|...+.+.++..++.+.. + -|. ..+|+..+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44566667788888888888888543322 234466678888888888888888888773 1 132 345555543332
Q ss_pred hCCC---------------hHHHHHHHHHHhccCCC
Q 007288 494 EHRL---------------PNLGKLAALRVLDLKPN 514 (609)
Q Consensus 494 ~~~~---------------~~~a~~~~~~~~~~~p~ 514 (609)
.-++ ...|.+.+.++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 2222 23466788888887774
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.3 Score=30.94 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=28.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++..++.+|.+.|++++|++++++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999998655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.06 E-value=5.4 Score=32.09 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 447 (609)
.....+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455567777888888888888887653 3677777778888888888888888888888766653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.93 E-value=20 Score=38.39 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 77 VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 77 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
...-=.+|-.+.+.|.+++|.++.+.... ........|...+..+....
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 33444677788899999999998855554 34556677788888886653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=5.7 Score=37.44 Aligned_cols=178 Identities=12% Similarity=0.002 Sum_probs=119.5
Q ss_pred HhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCHH
Q 007288 360 AKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF----MAVLTACSHAGLVD 432 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~ 432 (609)
.-.|+..+|-..++++.+ .|...++--=.+|...|+.+.-...+++..-. ..||...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777787778888775 36677777778899999999999999988764 34554333 33445567899999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhCCChHHHHHHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD------ESVWGPLLGACKEHRLPNLGKLAAL 506 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~ 506 (609)
+|.+.-++..+.+ +.|...-.++...+.-.|++.++.+++.+-.-.-+ .-.|-...-.+...+.++.|+++|.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999987765 44777777888899999999999999988631111 0011112223556689999999998
Q ss_pred HH--hccCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 007288 507 RV--LDLKPNMMGTYI---ILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 507 ~~--~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 539 (609)
.- .++..+|..... .+-.+..+.-.|.+-..+-
T Consensus 272 ~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 272 REIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 64 346667764333 2333334444444444333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.69 E-value=22 Score=38.23 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=35.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 456 VVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
++..+....+.+.+..+.+..+-. ++..|..++..+.+.+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 455666677777777777777533 677777777777777766655555544433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.62 E-value=7.9 Score=36.99 Aligned_cols=217 Identities=9% Similarity=0.093 Sum_probs=122.7
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCC-chHHHHHHHHhHHC--CCCCC---HHhHHHHHHHHHhh
Q 007288 260 CRFDCLSDANQYFDEMTEK------DLITWNTIIAGYEKSG-SSECLNMFSKMKSE--RFSPN---CFTFTSIIAACATL 327 (609)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~--~~~p~---~~t~~~ll~~~~~~ 327 (609)
....+.++|+..+.....+ -..++..+..+.+..| +++++..--.-++. ...-. -..|..+..+..+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776665442 1234556666677777 66655432211110 01111 12344444444455
Q ss_pred ccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--CcchHHHHHHHHHhcC
Q 007288 328 AALSCGQQVHAGIVRR-GLDG---NLALANALIDMYAKCGNISDSQKIFSEMSD-------R--DLVTWTSMMIGYGAHG 394 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g 394 (609)
.++.+++.+-+.-... |..+ ......++..++.-.+.++++++.|+...+ + ....+..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5555555554433221 1111 123445567777777888888888877652 2 2346888888888888
Q ss_pred CHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHhccCCHHHHHHHHHHhhh----cCCCC-ChhHHHHHHHHH
Q 007288 395 HGKEAIELFDEMVK----SGVRPDRIVF-----MAVLTACSHAGLVDEGLKYFKSMND----YNVNP-NKEIYGCVVDLL 460 (609)
Q Consensus 395 ~~~~A~~~~~~m~~----~g~~p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~ 460 (609)
++++|.-...+..+ .|+.--...| ..+.-++...|....|.+.-++..+ .|-++ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99988877766654 2222222222 2344466677877777777776633 33222 123345677888
Q ss_pred hhcCCHHHHHHHHHhC
Q 007288 461 GRAGRVKEAYELIKSM 476 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~ 476 (609)
...|+.+.|..-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8888888888877765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.43 E-value=41 Score=40.92 Aligned_cols=64 Identities=6% Similarity=-0.074 Sum_probs=56.6
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+|....+.++..|.++.|....-.+.+..+ +..+.-.+..+.+.|+...|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 56788888999999999999999998888876 67899999999999999999999999986544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=13 Score=35.12 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=37.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
++..+-...+.++++.|+.+....+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 344445555555666665433333333333333 223455666666664 566666666653 34555544444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.20 E-value=30 Score=38.87 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHH----HhhccHHHHHHHH
Q 007288 263 DCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAAC----ATLAALSCGQQVH 337 (609)
Q Consensus 263 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~ 337 (609)
++++.|+.-+.++. ...|...+.---+.+ +.+|+.++ .|+...+..+..+| .....++.|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555555555544 112333333333444 66666554 35555555444443 3345555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007288 338 AGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVT---WTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD 414 (609)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (609)
...-+. .--+.+|..+|+|.+|..+-.++..+-... -..|+.-+...+++-+|-++..+.... |
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~- 1029 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P- 1029 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-
Confidence 443221 234556667777777777777666432222 245666677777777777777766542 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
.-.+..+|+...+++|+++-..
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHHh
Confidence 1223334555566666655443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.9 Score=36.38 Aligned_cols=125 Identities=9% Similarity=-0.024 Sum_probs=65.8
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcch-hhHHH--HHHHhcCCC
Q 007288 88 TSFNCHNQAWTVFVEMVRNEVNPNAF-TLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYV-ENSLM--DVYATCCIS 163 (609)
Q Consensus 88 ~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll--~~~~~~g~~ 163 (609)
.+.+..++|+.-|..+.+.|..-=.. .--.+.......|+...|...|++.-+....|...- ...|= -.+...| .
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g-s 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG-S 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc-c
Confidence 45566666777776666654321100 001111224556666667666666655544443331 11111 1233445 6
Q ss_pred HHHHHHHHccCCCC----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 007288 164 MDNARLVFNDMKWK----NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMN 213 (609)
Q Consensus 164 ~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 213 (609)
+++.....+-+..+ -...-.+|.-+-.+.|++..|.+.|..+......|.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 66666666655432 123345566666777888888888887766433443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.91 E-value=15 Score=34.84 Aligned_cols=17 Identities=0% Similarity=-0.054 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHhccCC
Q 007288 414 DRIVFMAVLTACSHAGL 430 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~ 430 (609)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33444444444444444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.56 Score=43.89 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=74.6
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhCCCh
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~ 498 (609)
..-|.+.|.+++|+.+|...... .| |..++..-..+|.+..++..|..=.+.. .+. .-...|..-..+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 55688899999999999887553 34 7777777888999999988877666554 111 1123444444555567888
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
.+|..-++.++++.|.+.. |-..|.......++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 8999999999999997543 333444444444443
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.80 E-value=18 Score=35.70 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.+++..-..|+ .|.+.+-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 45777888899999999999988866 446788888888888888888888887776653 34445555543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=27 Score=37.52 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 393 HGHGKEAIELFDEMVKS-GVRPDRI--VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
..+.+.|..++...... ++.+... ....+.......+..+++...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34557777777766442 2322222 23333333333322445555555442211 2333334444444467777777
Q ss_pred HHHHHhCCCC-CCHhhHHHH-HHHHHhCCChHHHHHHHHHHh
Q 007288 470 YELIKSMPFK-PDESVWGPL-LGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 470 ~~~~~~~~~~-p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 509 (609)
...+..|+.. .+...|.-. ..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777776311 122223322 355556777777777777763
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.60 E-value=4.3 Score=35.28 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhh---cCCCCC----hhH
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI--VFMAVLTACSHAGLVDEGLKYFKSMND---YNVNPN----KEI 452 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~----~~~ 452 (609)
.+..+..-|.+.|+.+.|++.|.++.+....+... .+-.+|+.+...+++..+.....+... .+-.++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44556666677777777777777766654444432 555666666777777777666666522 111111 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
|..| .+...+++.+|.+.|-..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 223467888888777666
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.41 Score=28.06 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555666667777777777777766666
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.50 E-value=28 Score=37.41 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=43.6
Q ss_pred CHHHHHHHHccCCC-------CChhhHHHHHHHHH--hcCChhhHHHHHHHHHHCCC---------CCCHhhHHHHHHHH
Q 007288 163 SMDNARLVFNDMKW-------KNDVSWTTLITGYA--HSGNGYGGLGVFKEMLLEGV---------EMNPYSFSIAVRAC 224 (609)
Q Consensus 163 ~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~---------~p~~~t~~~ll~~~ 224 (609)
+...|.+.++.+.. +-...+-.++.+.. ..+..+++++.++.+..... .|-..+|..++..+
T Consensus 154 d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~ 233 (608)
T PF10345_consen 154 DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLC 233 (608)
T ss_pred cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHH
Confidence 66666666654432 12233333443333 34556777777776643221 33455677777765
Q ss_pred H--ccCCchhHHHHHHHHHH
Q 007288 225 A--STGWVSFGKLIHAAVIK 242 (609)
Q Consensus 225 ~--~~g~~~~a~~~~~~~~~ 242 (609)
+ ..|+++.+...++.+.+
T Consensus 234 ~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 234 CSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 4 56777777666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.2 Score=35.85 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=47.4
Q ss_pred hHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 451 EIYGCVVDLL---GRAGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 451 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.+.+.|++.+ .+.++.+++..++..+ -..|.......+- ..+...|++.+|..+++.+.+-.|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3344444433 3566777777777776 3445444333332 346677777777777777777666555444455555
Q ss_pred HHhcCCh
Q 007288 526 YAAEGKW 532 (609)
Q Consensus 526 ~~~~g~~ 532 (609)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 5555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.03 E-value=21 Score=35.15 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 480 PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP----NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 480 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
....+|..+...+++.|+++.|...+.++....+ ..+.....-+..+...|+..+|+..++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556788888999999999999999999988652 24567777899999999999999999988873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=11 Score=32.03 Aligned_cols=52 Identities=6% Similarity=-0.099 Sum_probs=26.9
Q ss_pred HhCCChHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 493 KEHRLPNLGKLAALRVLD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...|.++......+.+-. .+|-....-..|+-+-.+.|++.+|...|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555544443333322 2332233444566666667777777777766654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.97 E-value=11 Score=32.09 Aligned_cols=132 Identities=10% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCH
Q 007288 235 LIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNC 314 (609)
Q Consensus 235 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~ 314 (609)
++++.+.+.+++|+...+..+++.+.+.|++.....++. .++-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----------------------------------~~Vi~DS 60 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----------------------------------YHVIPDS 60 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----------------------------------hcccCCc
Confidence 445555666777887888888888887777665554443 2334444
Q ss_pred HhHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007288 315 FTFTSIIAACATL--AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGA 392 (609)
Q Consensus 315 ~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 392 (609)
......+-.+... .-...|.+.+.++.. .+..+++.+...|++-+|.++.+....-+......++.+-.+
T Consensus 61 k~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 61 KPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred HHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 4333332222111 011222222222221 134556666777777777777766544433444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 007288 393 HGHGKEAIELFDEMVK 408 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~ 408 (609)
.+|...-..+++-..+
T Consensus 133 ~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEE 148 (167)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555444444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.51 Score=28.25 Aligned_cols=27 Identities=7% Similarity=-0.167 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777888888888888888888554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.62 E-value=15 Score=33.13 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDY---NVNPNKEIYGCVVDLLGRAGRVKEAYELI 473 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
|...|-.+....++..|..+++.-... .-+-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 344444444555555565555553111 1112334444555544 345555555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.18 E-value=18 Score=33.15 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--C--CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM--P--FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~--~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
.+.+-|.+.|.+..|..-+++| . -.+ .....-.+..+|...|..++|.....-+....|++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3556788899999988888887 1 111 22334445588999999999988777666666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.84 E-value=13 Score=31.29 Aligned_cols=87 Identities=16% Similarity=0.032 Sum_probs=46.8
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIY-GCVVDLLGRAGRVKEAYELIKSMP-FKPDESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
-...++.+++..++..+.-. .|..... ..-...+.+.|++.+|+.+|+++. ..|....-..|+..|.....-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 34566777777777777442 2332221 122344567788888888888873 3344444455555555443333333
Q ss_pred HHHHHHhccCC
Q 007288 503 LAALRVLDLKP 513 (609)
Q Consensus 503 ~~~~~~~~~~p 513 (609)
....++++..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 33444555444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.9 Score=35.44 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 463 AGRVKEAYELIKSM-PFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.++++++..+++.+ -+.|+..-...+- ..+...|++.+|..+++.+.+-.+..+..--.++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 45555555555555 2333322222211 234455555555555555555554333333333344444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.7 Score=26.97 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.71 Score=27.03 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999998743
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.44 E-value=38 Score=36.15 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 397 KEAIELFDEMVKSGVRP-----DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
+..++++.+.....+-| ........+..|.+.|-+++-.-++.+|-. .......+| -+.+++++|++
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn-----~k~AL~lII---~el~die~AIe 682 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN-----AKEALKLII---NELRDIEKAIE 682 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc-----hHHHHHHHH---HHhhCHHHHHH
Confidence 34455555554433322 112345566677778888888888877731 233333444 45588888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhCCChHHHH
Q 007288 472 LIKSMPFKPDESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 472 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+.++- -|...|..||.-+...-.+-.++
T Consensus 683 fvKeq---~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 683 FVKEQ---DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence 88774 48889999998877766555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.41 E-value=5.3 Score=37.30 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-----hcCCCCChhHHHHHHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMN-----DYNVNPNKEIYGCVVD 458 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~ 458 (609)
..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 334444444455555555555554431 2244455555555555555555555544442 2455555554444433
Q ss_pred H
Q 007288 459 L 459 (609)
Q Consensus 459 ~ 459 (609)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.40 E-value=14 Score=32.79 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=102.1
Q ss_pred hcCCHHHHHHHHHhcC--CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 361 KCGNISDSQKIFSEMS--DRD-LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
..|-+.-|.-=|.... .|+ +..||-+.-.+...|+++.|.+.|+...+....-+....|. .-++--.|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHH
Confidence 3444444444444433 343 35788888888999999999999999888532222222222 2234457888888887
Q ss_pred HHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHhhHHHHH-HHHHhCCChHHHHHHHHHHhccCCC
Q 007288 438 FKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELI-KSMPFKPDESVWGPLL-GACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 438 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+...-..+. .|=...|--+. ...-++.+|..-+ ++.. ..|..-|..-+ ..|.-+=..+ .+++++.....+
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~ 228 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATD 228 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccc
Confidence 777643332 22222222222 2344677776544 3332 23445555444 2222221222 223333332222
Q ss_pred C-------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 515 M-------MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 515 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+ ..+|.-|+.-|...|+.++|..+|+.....++
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2 45888899999999999999999998876544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.27 E-value=17 Score=31.74 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=11.2
Q ss_pred HHHHhCCChHHHHHHHHHHhccC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
+++...|+-++|+..|+++++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHcc
Confidence 34444555555555555544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.94 E-value=5.9 Score=34.44 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC-hh------
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP--YSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN-LP------ 250 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~------ 250 (609)
..+..+...|++.|+.+.|++.|.++.+....+.. ..+..+++.....+++..+.....++...--... ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35777788888888888888888888776444332 3456677777777888877777766655321211 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMT 276 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 276 (609)
+|..+ .+...+++..|-..|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 1233566777666665553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.80 E-value=42 Score=35.87 Aligned_cols=146 Identities=11% Similarity=-0.025 Sum_probs=84.0
Q ss_pred HHHHHccCChhHHHHhhccCCC--C---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC
Q 007288 53 IKSYFDEGLIEEARTLFDEMPE--R---DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS 127 (609)
Q Consensus 53 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (609)
|+-+.+.+.+++|+++.+.... + -...+-..|..+.-.|++++|-...-.|..+ +..-|..-+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 4566778999999998887663 1 2245788888888889999888887777643 34444444444444444
Q ss_pred hHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC--------------------CChhhHHHHHH
Q 007288 128 LSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW--------------------KNDVSWTTLIT 187 (609)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~--------------------~~~~~~~~li~ 187 (609)
......+ +.......+..+|..++..+.. . +...-.++....+. .+...-..|+.
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~-~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S-DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-H-HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3322111 1111111234455555555544 2 33333333332221 12223444778
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 007288 188 GYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 188 ~~~~~g~~~~a~~~~~~m~~ 207 (609)
-|...+++..|+.++-..++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888888888888776653
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.91 E-value=1 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=18.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.48 E-value=5.5 Score=26.37 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 519 YIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...++-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456788899999999999999999873
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.03 E-value=0.8 Score=38.28 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3455556667777777777777665555667777777788877766666666652211 112345566666677
Q ss_pred HHHHHHHHHhCC
Q 007288 466 VKEAYELIKSMP 477 (609)
Q Consensus 466 ~~~A~~~~~~~~ 477 (609)
+++|.-++.+++
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776664
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.98 E-value=46 Score=34.45 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=20.6
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
-..|++..|..+++.+.+-.|+....-..-+....+.|..+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 34445555555555554433443333333444444445544444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.5 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.++..|+..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998875
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=3.7 Score=38.30 Aligned_cols=62 Identities=16% Similarity=-0.047 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+.|-.+|.+.++++.|+.+.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++...+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34457799999999999999999999999998899999999999999999999999887654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.13 E-value=8.1 Score=36.16 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=65.5
Q ss_pred CCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-C-----hhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHh
Q 007288 142 GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-N-----DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPY 215 (609)
Q Consensus 142 ~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 215 (609)
|......+...++..-.... +++.+...+-.+... + ..+-.++++.+. .-+.++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555555666555555 677777666555431 1 111222333332 335668888888778888888888
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHHHHhC
Q 007288 216 SFSIAVRACASTGWVSFGKLIHAAVIKHG 244 (609)
Q Consensus 216 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 244 (609)
+++.+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.8 Score=36.18 Aligned_cols=77 Identities=13% Similarity=0.265 Sum_probs=36.3
Q ss_pred HHHHHHHccCChhHHHHhhccCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCC
Q 007288 51 NLIKSYFDEGLIEEARTLFDEMPE----RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMK 126 (609)
Q Consensus 51 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 126 (609)
.+|+.+.+.+.++.+..+++.+.. .+....+.++..|++.+..+...++++. .+......++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 455555555555555555554441 2344455555666655555555555541 11122334444455555
Q ss_pred ChHHHHHH
Q 007288 127 SLSNAALV 134 (609)
Q Consensus 127 ~~~~a~~~ 134 (609)
.++++.-+
T Consensus 85 l~~~a~~L 92 (143)
T PF00637_consen 85 LYEEAVYL 92 (143)
T ss_dssp SHHHHHHH
T ss_pred hHHHHHHH
Confidence 55444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=84.91 E-value=36 Score=32.25 Aligned_cols=97 Identities=8% Similarity=0.031 Sum_probs=43.5
Q ss_pred HHHHHHHHHccCCch---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 007288 217 FSIAVRACASTGWVS---FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK---DLITWNTIIAGY 290 (609)
Q Consensus 217 ~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 290 (609)
+..++.++...+..+ +|..+++.+... .+..+.++-.-+..+.+.++.+++.+.+.+|... ....+...+..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 344445555544433 333344444322 2223444444455555566666666666665432 223333333333
Q ss_pred ---HhCCchHHHHHHHHhHHCCCCCCH
Q 007288 291 ---EKSGSSECLNMFSKMKSERFSPNC 314 (609)
Q Consensus 291 ---~~~~~~~a~~~~~~m~~~~~~p~~ 314 (609)
.......+...+..+....+.|..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 333344555555555544444433
|
It is also involved in sporulation []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.1 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777777778888888888777664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.85 E-value=2.7 Score=39.58 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=56.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
..-|.++|.+++|+..|..... +.| |.+++..-..+|.+...+..|..-.......+ ...+.+|.|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 4568999999999999998876 466 88899988999999999887776666554322 234566666555
Q ss_pred HHHHHHHHHh
Q 007288 466 VKEAYELIKS 475 (609)
Q Consensus 466 ~~~A~~~~~~ 475 (609)
-.+++....+
T Consensus 174 AR~~Lg~~~E 183 (536)
T KOG4648|consen 174 ARESLGNNME 183 (536)
T ss_pred HHHHHhhHHH
Confidence 4444444433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.83 E-value=22 Score=32.13 Aligned_cols=58 Identities=10% Similarity=-0.090 Sum_probs=50.4
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.++...|++-++++....++...|.|..+|..-+.+.+..=+.++|.+-|.+..+..+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 5566788999999999999999999999999999999888888999998988877544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.44 E-value=17 Score=34.18 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=76.3
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch-----hHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHh
Q 007288 243 HGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-DL-----ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFT 316 (609)
Q Consensus 243 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 316 (609)
.|.+....+...++..-....+++.+...+-+++.. +. .+-.+.+.-+.+-..++++.++..=++-|+-||.++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 455666666677777777778888888887777642 11 223344555666667788888888888899999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 317 FTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 317 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
+..+|..+.+.++...|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988887776543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.14 E-value=1.9 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007288 238 AAVIKHGFGSNLPVMNSILDMYCRFDCLSDAN 269 (609)
Q Consensus 238 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 269 (609)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 557778888888888888888775
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.00 E-value=2.5 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+|..++..|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999876
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.64 E-value=10 Score=31.35 Aligned_cols=109 Identities=8% Similarity=0.107 Sum_probs=64.8
Q ss_pred HHHHHHHHHH---HhccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhH-HHHH
Q 007288 415 RIVFMAVLTA---CSHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVW-GPLL 489 (609)
Q Consensus 415 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~ 489 (609)
....+.|+.. -...++.+++..+++.|.-... .+...++. ...+...|++++|+++|++....+....| ..|+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 3444455443 3457899999999999954221 22334443 34567899999999999999543333233 3344
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..|.... -+ ..|...+......|...++..+.+.+.
T Consensus 85 A~CL~al--------------~D----p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 85 ALCLNAK--------------GD----AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHhc--------------CC----hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 3343321 11 235555555556666677777777766
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.60 E-value=59 Score=34.45 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHH--HHH-HHhcCCHHHHHHHHHhcCC--------CCcchHHHHHHHHHhcC----
Q 007288 330 LSCGQQVHAGIVRRGLDGNLALANAL--IDM-YAKCGNISDSQKIFSEMSD--------RDLVTWTSMMIGYGAHG---- 394 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g---- 394 (609)
...+.++++...+.|... ......+ ..+ +....+.+.|..+|+.+.+ -.....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~-a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSE-AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcchH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 456666666666655211 1111111 111 2344566666666655532 12233444444444422
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhcC
Q 007288 395 -HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMNDYN 445 (609)
Q Consensus 395 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 445 (609)
+.+.|+.++....+.| .|+...+...+.-... ..+...|.++|....+.|
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444555555555544 2333322222221111 123445555555554444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.35 E-value=34 Score=30.82 Aligned_cols=90 Identities=7% Similarity=-0.061 Sum_probs=42.3
Q ss_pred HHHHHhhc-CCHHHHHHHHHhC-----CCCCCHhhHHHHH---HHHHhCCChHHHHHHHHHHhccCCCCcc------hHH
Q 007288 456 VVDLLGRA-GRVKEAYELIKSM-----PFKPDESVWGPLL---GACKEHRLPNLGKLAALRVLDLKPNMMG------TYI 520 (609)
Q Consensus 456 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~ 520 (609)
+...|-.. .+++.|+..|+.. +.+.+...-..++ .-....+++.+|..+|+++....-++.. .|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 4555666666555 2222222223333 3345667777788887777654332221 122
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhC
Q 007288 521 ILSNIYAA-EGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 521 ~l~~~~~~-~g~~~~A~~~~~~m~~~ 545 (609)
.-+.+|.- .++.-.+...+++-.+.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 22222222 25555555556555553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.50 E-value=75 Score=34.15 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=90.7
Q ss_pred CChhHHhHHHHHHHccCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCC-------hhHHHHHHHHHHHCCCCCCcc
Q 007288 44 GPSILATNLIKSYFDEGLIEEARTLFDEMP---ERDVVSWTVMIAGYTSFNC-------HNQAWTVFVEMVRNEVNPNAF 113 (609)
Q Consensus 44 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~ 113 (609)
.+..+| ++|=-+.|+|++++|.++..+.. +.....+-..+..|....+ -++...-|++..+.....|+.
T Consensus 110 ~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 110 NGDPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCCccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 344455 46667889999999999994333 2344567777888866532 235556677766654433543
Q ss_pred h---HHHHHHHhhCCC-C-------hHHHHHHHHHH-HHhCCC-----CCcchhhHHHHHHHhcCCCHHHHHHHHccCCC
Q 007288 114 T---LSSVLKACKGMK-S-------LSNAALVHGMA-IKEGLE-----GSIYVENSLMDVYATCCISMDNARLVFNDMKW 176 (609)
Q Consensus 114 t---~~~ll~~~~~~~-~-------~~~a~~~~~~~-~~~~~~-----~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~ 176 (609)
- |..+ ..|--.. . .+.-. +++.. .+.... .+..++..|=+...+.| ...|.. .
T Consensus 189 K~AvY~il-g~cD~~~~~~~~V~~tiED~L-W~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G------e~~F~~--~ 258 (613)
T PF04097_consen 189 KRAVYKIL-GRCDLSRRHLPEVARTIEDWL-WLQLSLVREDERSSSSAYERYTLEDLQKLILKYG------ESHFNA--G 258 (613)
T ss_dssp HHHHHHHH-HT--CCC-S-TTC--SHHHHH-HHHHHH---TTSSSSSSS----HHHHHHHHHHH-------GGGCTT---
T ss_pred HHHHHHHH-hcCCccccchHHHhCcHHHHH-HHHHHhhccCCCccccccccccHHHHHHHHHHhc------hhhccc--c
Confidence 2 3333 2221111 1 11111 11111 111111 11233333333333222 112222 1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhC-CCCChhHHHHH
Q 007288 177 KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG-FGSNLPVMNSI 255 (609)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l 255 (609)
.+.. .....+.-.|.++.|++.+-. ..+...|...+.+.+..+.-.+-.+... ..+.... -.|...-+..|
T Consensus 259 ~~p~---~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 259 SNPL---LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp --------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred hhHH---HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHH
Confidence 1222 234555668999999998876 2334556666666665543322211111 2222111 01111446667
Q ss_pred HHHHHhc---CCHHHHHHHHHhcCC
Q 007288 256 LDMYCRF---DCLSDANQYFDEMTE 277 (609)
Q Consensus 256 ~~~~~~~---g~~~~A~~~~~~~~~ 277 (609)
|..|++. .+..+|...|-.+..
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 7777653 566777777666543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.40 E-value=60 Score=32.97 Aligned_cols=171 Identities=9% Similarity=0.108 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007288 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358 (609)
Q Consensus 280 ~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (609)
....-+++..+..+. +.-+..+-.+|..-| -+-..|..++..|... ..+.-..+|+++.+..+. |+..-.-|+..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 344556666676666 666667777777643 4566677777777666 556666777777665432 33333445554
Q ss_pred HHhcCCHHHHHHHHHhcCCC------Cc---chHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcc
Q 007288 359 YAKCGNISDSQKIFSEMSDR------DL---VTWTSMMIGYGAHGHGKEAIELFDEMVK-SGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~ 428 (609)
|-+ ++.+.+...|..+... +. ..|..+...- ..+.+..+.+..+... .|..--...+.-+-..|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 444 6666776666665421 11 1344443311 2455555555555544 23333444555555666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
.++++|++++....+.+- -|...-..++.
T Consensus 219 eN~~eai~Ilk~il~~d~-k~~~ar~~~i~ 247 (711)
T COG1747 219 ENWTEAIRILKHILEHDE-KDVWARKEIIE 247 (711)
T ss_pred cCHHHHHHHHHHHhhhcc-hhhhHHHHHHH
Confidence 677777777766655442 23333334443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=16 Score=31.96 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=57.6
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHhCCCh
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-SVWGPLLGACKEHRLP 498 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~ 498 (609)
+.+.|++++|..-|......-.... ...|..-..++.+.+.++.|++-..+. .+.|.. .....-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4456666666666666644322111 223334445666777777777766555 444421 1111222457777888
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHH
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
+.|++-|+++++.+|....+-..+.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999996544433333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.37 E-value=2.2 Score=24.44 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=22.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+..++.+.|++++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677788888888888888888875
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.20 E-value=37 Score=29.71 Aligned_cols=88 Identities=9% Similarity=-0.056 Sum_probs=45.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHH-----HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 458 DLLGRAGRVKEAYELIKSMPFKPDESVWGPLL-----GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
..+..+|++++|...++..--.|....+..++ +.....|.+++|+..+....+-.= .+.....-++++...|+-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k 175 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCch
Confidence 44455555555555555442223333333332 334555566665555544333211 123344566777777777
Q ss_pred HHHHHHHHHHHhCC
Q 007288 533 EEFAKFRKIMRGMG 546 (609)
Q Consensus 533 ~~A~~~~~~m~~~~ 546 (609)
++|+.-|.+..+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777776654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.11 E-value=2.1 Score=36.61 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHH
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK----WEEFAKFRKIM 542 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 542 (609)
+++|..-+++++.++|+...++..++++|...+. ..+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888888999999999999999987654 33444444444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.79 E-value=15 Score=28.05 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHH
Q 007288 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDL 459 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~ 459 (609)
+..+-++.+....+.|+.......+++|.+.+++..|.++|+.. .+.| +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 44555566666778899999999999999999999999999888 4444 233377766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.74 E-value=26 Score=28.47 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=13.6
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
-++.+.++++.++.....+++.+|+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4455555555555555555555553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.47 E-value=3.8 Score=36.08 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=49.3
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH--HHHHhCCChHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL--GACKEHRLPNL 500 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~--~~~~~~~~~~~ 500 (609)
|-..|-+.-|..-|..... +.|+ +.+||.|.--+...|+++.|.+.|+.. ...|.. -|..+- -++.-.|+++.
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHh
Confidence 4445555555555554433 3444 456676766677777777777777765 333321 122221 22344567777
Q ss_pred HHHHHHHHhccCCCCc
Q 007288 501 GKLAALRVLDLKPNMM 516 (609)
Q Consensus 501 a~~~~~~~~~~~p~~~ 516 (609)
|.+-+.+.-..+|+||
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 7776666666666543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=27 Score=34.84 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=38.0
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
...|+++.+.+.+....+. +.....+..+++....+.|++++|...-..| + ...+..............|-++++..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 4455555555555444221 1123344445555555555555555555444 1 01122222222223344444555555
Q ss_pred HHHHHhccCC
Q 007288 504 AALRVLDLKP 513 (609)
Q Consensus 504 ~~~~~~~~~p 513 (609)
.+++++.++|
T Consensus 413 ~wk~~~~~~~ 422 (831)
T PRK15180 413 YWKRVLLLNP 422 (831)
T ss_pred HHHHHhccCC
Confidence 5555555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 3e-13
Identities = 29/270 (10%), Positives = 77/270 (28%), Gaps = 12/270 (4%)
Query: 300 NMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359
+ + SP ++ +L Q + L G A
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 360 AKCGNISDSQKIFSEMSDR-------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR 412
+ + + + L + ++M+G+ G KE + + + +G+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 413 PDRIVFMAVLTACSHAGLVDEGL-KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471
PD + + A L + + + M+ + ++ RA +K ++
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 472 LIKSM----PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527
+ + P + L + + KL ++ L++
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVC 317
Query: 528 AEGKWEEFAKFRKIMRGMGSKKEVGMSWIE 557
+ +++ + K + W +
Sbjct: 318 VVSVEKPTLPSKEVKHARKTLKTLRDQWEK 347
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 5e-07
Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 242 KHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEK-------DLITWNTIIAGYEKSG 294
+ + + D L A+ + L +N ++ G+ + G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 295 S-SECLNMFSKMKSERFSPNCFTFTSIIAACA 325
+ E + + +K +P+ ++ + +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 5e-06
Identities = 27/231 (11%), Positives = 63/231 (27%), Gaps = 14/231 (6%)
Query: 96 AWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155
A + + +P L+ +L+ G SL G + L G +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 156 VYATCCISMDNARLVFNDMKWKND-------VSWTTLITGYAHSGNGYGGLGVFKEMLLE 208
+ A + + + ++ G+A G + V +
Sbjct: 136 CCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 209 GVEMNPYSFSIAVRACASTG-WVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267
G+ + S++ A++ + + + G +L R L
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 268 ANQYFDEMT-----EKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPN 313
++ + + T + Y K G + +K+ +
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 78/616 (12%), Positives = 165/616 (26%), Gaps = 201/616 (32%)
Query: 8 SYAATFHCHKIPPIIKQSLQSVKKSSIQSDPP-----------LIPKGPSILATNLIKSY 56
++ F C + + K L + I L+ K +++ +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQKF 82
Query: 57 FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLS 116
+E L + L + ++M Y ++ + + V+ L
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIE--QRDRLYNDNQVFAKYNVS----RLQ 135
Query: 117 SVLKACKGMKSLSNAA--LVHGMA----------------IKEGLEGSIY--------VE 150
LK + + L A L+ G+ ++ ++ I+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 151 NSLMDVYATCCISMD-----------NARLVFND--------MKWKN---------DVSW 182
+++++ +D N +L + +K K +V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q 254
Query: 183 T------------TLIT----GYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS 226
L+T + + + + S+
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSL----LLK 309
Query: 227 TGWVSFGKL------IH-------AAVIKHGFG-------SNLPVMNSILDMYCRFDCLS 266
L + A I+ G N + +I++ + L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLE 367
Query: 267 DAN--QYFDEMT--EKDL-ITWNTIIAGYEKSGSSECLNMFSKM--KS--ERFSPNCFTF 317
A + FD ++ I + + S+ + + +K+ S E+ P T
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426
Query: 318 T------SIIAACATLAALSCGQQVHAGIV-----RRGLDGNLALANALIDMYAKCGNIS 366
+ + AL H IV + D + + L D Y
Sbjct: 427 SIPSIYLELKVKLENEYAL------HRSIVDHYNIPKTFDSDDLIPPYL-DQY------- 472
Query: 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM------- 419
+S IG+ H E E R+VF+
Sbjct: 473 ----FYS-------------HIGH--HLKNIEHPERMTLF--------RMVFLDFRFLEQ 505
Query: 420 ---AVLTACSHAGLVDEGLKYFKSMNDY---NVNPNKEIYGCVVDLLGRAG----RVKEA 469
TA + +G + L+ K Y N + + ++D L + K
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 470 YELIKSMPFKPDESVW 485
+L++ DE+++
Sbjct: 566 -DLLRIALMAEDEAIF 580
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.62 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.39 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.26 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.2 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.16 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.06 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.95 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.83 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.83 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.68 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.63 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.47 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.4 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.95 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.88 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.82 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.8 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.72 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.6 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.26 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.41 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.23 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.75 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.77 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.43 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.3 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.81 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.82 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.41 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.72 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.88 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.43 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.42 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.96 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.71 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.03 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.94 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.81 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.13 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=362.10 Aligned_cols=484 Identities=11% Similarity=-0.016 Sum_probs=403.1
Q ss_pred HHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHH
Q 007288 54 KSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAAL 133 (609)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 133 (609)
..+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..++.+|...|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3456778888999999998888999999999999999999999999999985 56788999999999999999999999
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC-------------------ChhhHHHHHHHHHhcCC
Q 007288 134 VHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK-------------------NDVSWTTLITGYAHSGN 194 (609)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~ 194 (609)
+++.+... +++..+++.++.+|.+.| ++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 99988643 578899999999999999 999999999965433 37899999999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhH--HHH-HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007288 195 GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFG--KLI-HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQY 271 (609)
Q Consensus 195 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a--~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (609)
+++|+++|++|...+.. +...+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999886422 444555554443333222221 111 44444444455566788889999999999999999
Q ss_pred HHhcCC--CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 007288 272 FDEMTE--KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGN 348 (609)
Q Consensus 272 ~~~~~~--~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (609)
|+++.+ ++..+|+.++.+|.+.| .++|..+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999988 78999999999999999 999999999999765 3377889999999999999999999999998664 567
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 88999999999999999999999998863 467899999999999999999999999999863 44778999999999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HhhHHHHHHHHHhCC
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-------PFKPD--ESVWGPLLGACKEHR 496 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~ 496 (609)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999997655 347889999999999999999999999988 45787 689999999999999
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
++++|...++++++.+|++..+|..++.+|.+.|++++|.++++++.+..+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999988544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=346.91 Aligned_cols=479 Identities=8% Similarity=0.005 Sum_probs=409.2
Q ss_pred CCCChhHHhHHHHHHHccCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 007288 42 PKGPSILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVL 119 (609)
Q Consensus 42 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 119 (609)
|.+++..|+.++..|.+.|++++|+.+|+++. .|+..+|+.++.+|.+.|++++|..+|+.+.. ..++..+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 45788999999999999999999999999986 47888999999999999999999999999865 367889999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHh---------------CCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC---Chhh
Q 007288 120 KACKGMKSLSNAALVHGMAIKE---------------GLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK---NDVS 181 (609)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~---~~~~ 181 (609)
.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.| ++++|.+.|+++.+. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCchhhHH
Confidence 9999999999999999853211 12235789999999999999 999999999998653 3445
Q ss_pred HHHHHHHHHhcCChhhHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007288 182 WTTLITGYAHSGNGYGGLG--V-FKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~--~-~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 258 (609)
+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++++.+.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555554443333222211 1 555555555566667778888899999999999999998876 5889999999999
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHH
Q 007288 259 YCRFDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 334 (609)
|.+.|++++|..+|+++.+ .+..+|+.++.++.+.| .++|..+++++.... +.+..++..+...+.+.|++++|.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999853 36788999999999999 999999999998643 457889999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
.+|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998864 45678999999999999999999999998763 477899999999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHh
Q 007288 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DES 483 (609)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 483 (609)
+.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 447889999999999999999999999999665 66777 789999999999999999999999987 3345 788
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
+|..+..+|.+.|++++|...++++++++|+++..+..++.+|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=245.99 Aligned_cols=210 Identities=10% Similarity=0.084 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007288 197 GGLGVFKEMLLEGVEMNPY-SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEM 275 (609)
Q Consensus 197 ~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 275 (609)
.+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3455556676666665543 47778888888888888888888888888888888888888888876653321
Q ss_pred CCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHH
Q 007288 276 TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANA 354 (609)
Q Consensus 276 ~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (609)
.+.+ .++|.++|++|...|+.||..||+++|.+|++.|+++.|.++|++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 1233 578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 355 LIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999888888888888888886 4788888888888888888888888888888888888888888888877763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-25 Score=220.68 Aligned_cols=373 Identities=9% Similarity=0.032 Sum_probs=230.2
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhh
Q 007288 121 ACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYG 197 (609)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 197 (609)
.+.+.|++++|.+.+..+.+..+. +...+..+...+...| ++++|...++.... .+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344555666666665555554322 2233334444444444 55555444443321 233444444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007288 198 GLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE 277 (609)
Q Consensus 198 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 277 (609)
|++.|+++.... +.+..+|..+..++...|++++|...++.+.+.. +.+..++..+...+...|+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~------------- 150 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGR------------- 150 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSC-------------
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC-------------
Confidence 555554444431 1122334444444444444444444444444432 2223333334444444444
Q ss_pred CChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 278 KDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
.++|...|+++.... +.+..++..+...+...|+++.|...++++.+.+ +.+...+..+..
T Consensus 151 -----------------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 151 -----------------LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp -----------------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 444444444444321 1234556666666666666666666666666654 334556667777
Q ss_pred HHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
++...|++++|...|++.. .| +..++..+..+|...|++++|++.|+++.+.+ +.+..++..+...+.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777665 23 45677788888888888888888888888742 22456788888888888888888
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLK 512 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 512 (609)
...++++.+.. +.+..++..+...+.+.|++++|.+.++++ ...| +..++..+..++.+.|++++|...+++++++.
T Consensus 291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888886654 456778888888888888888888888877 4445 46677888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCC
Q 007288 513 PNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 513 p~~~~~~~~l~~~~~~~g~ 531 (609)
|++...|..++.++...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 8888888888888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=218.57 Aligned_cols=353 Identities=11% Similarity=0.062 Sum_probs=303.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
+...+.+.|++++|.+.+.++.... +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778899999999998887753 2244556667777888999999999999888874 6678899999999999999
Q ss_pred HHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHHhhccHHHHHHHHHH
Q 007288 265 LSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLAALSCGQQVHAG 339 (609)
Q Consensus 265 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 339 (609)
+++|...|+++.+ | +...|..+..++...| .++|...|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 4567899999999999 99999999998875 3544 4566677788889999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 007288 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DR 415 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 415 (609)
+.+.. +.+..++..+..++.+.|++++|...|+++.+ | +...|..+...+...|++++|+..+++..+. .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 44678899999999999999999999999873 3 4568889999999999999999999999884 44 46
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 493 (609)
.++..+...+...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|++.++++ . ..++..++..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 789999999999999999999999997754 335778999999999999999999999988 2 2346788999999999
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+.|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=239.88 Aligned_cols=196 Identities=14% Similarity=0.215 Sum_probs=155.6
Q ss_pred HHHHHHhcCCC-----ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc---------cHHH
Q 007288 268 ANQYFDEMTEK-----DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA---------ALSC 332 (609)
Q Consensus 268 A~~~~~~~~~~-----~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---------~~~~ 332 (609)
+..+.+.+.+. ....++.+|.+|++.| .++|+++|++|.+.|+.||..||+++|.+|++.+ +++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555432 2345788888888888 8888899998888888889889988888887654 4678
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS----DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888886 47888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 409 SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 409 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-22 Score=208.01 Aligned_cols=394 Identities=8% Similarity=-0.064 Sum_probs=314.1
Q ss_pred cchhhHHHHHHHhcCCCHHHHHHHHccCCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 007288 147 IYVENSLMDVYATCCISMDNARLVFNDMKW--KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRAC 224 (609)
Q Consensus 147 ~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 224 (609)
...+..+...+.+.| ++++|...|+++.. |+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345667778888888 99999999988753 688889999999999999999999999998864 33567888899999
Q ss_pred HccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHH-------------------------------
Q 007288 225 ASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFD------------------------------- 273 (609)
Q Consensus 225 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------------------- 273 (609)
...|++++|...|+.+.+.+ +++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998876 4444444444444443322222222221
Q ss_pred -------hcCC---------C-ChhHHHHHHHHHHh---CC-chHHHHHHHHhHH-----CCCCC--------CHHhHHH
Q 007288 274 -------EMTE---------K-DLITWNTIIAGYEK---SG-SSECLNMFSKMKS-----ERFSP--------NCFTFTS 319 (609)
Q Consensus 274 -------~~~~---------~-~~~~~~~li~~~~~---~~-~~~a~~~~~~m~~-----~~~~p--------~~~t~~~ 319 (609)
.... + +...+......+.. .| +++|...|+++.. ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1100 1 13334444444443 77 9999999999887 31122 3456778
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH
Q 007288 320 IIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHG 396 (609)
Q Consensus 320 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 396 (609)
+...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...++.+.+ .+...+..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999988644 88889999999999999999999998764 3667889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 397 KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999863 3356788889999999999999999999997654 336778889999999999999999999887
Q ss_pred ----CCCCC----HhhHHHHHHHHHh---CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 477 ----PFKPD----ESVWGPLLGACKE---HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 477 ----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+..++ ...+..+..++.. .|++++|...++++++..|++..++..++.+|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3388888899999 999999999999999999999999999999999999999999999999885
Q ss_pred CC
Q 007288 546 GS 547 (609)
Q Consensus 546 ~~ 547 (609)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 44
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=207.72 Aligned_cols=443 Identities=11% Similarity=-0.005 Sum_probs=267.2
Q ss_pred hHHhHHHHHHHccCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhC
Q 007288 47 ILATNLIKSYFDEGLIEEARTLFDEMP--ERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKG 124 (609)
Q Consensus 47 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (609)
..+..+...+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|...|+++.+.+. .+...+..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 345556666666777777777776664 35666666666677777777777777776666431 234566666666666
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC----CChhhHHHHHHHHHhcCChhhHHH
Q 007288 125 MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW----KNDVSWTTLITGYAHSGNGYGGLG 200 (609)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~ 200 (609)
.|++++|...++.+.+.+. ++......++..+.... ....+.+.+..+.. ++...++.-...............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CCCCHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 7777777777766666553 23333333333333322 22222222221111 111111111111111111111111
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHhcCC
Q 007288 201 VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR---FDCLSDANQYFDEMTE 277 (609)
Q Consensus 201 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 277 (609)
+...+......++ .. ...-+.+...+......+.. .|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~~~~----------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 164 MASFFGIFKPELT----------------FA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp HHHHHTTSCCCCC----------------CS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHH----------------HH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 1111111110000 00 00001112222223332222 4555555555554432
Q ss_pred ----------------C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHH
Q 007288 278 ----------------K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAG 339 (609)
Q Consensus 278 ----------------~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 339 (609)
+ +...+..+...+...| +++|...|+++.... |+...+..+...+...|+++.|...++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1 2345556666666677 777777777766643 3366667777777777888888888777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007288 340 IVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRI 416 (609)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (609)
+.+.. +.+..++..+..+|...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 296 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 296 ALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp HHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred HhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 77654 34566777788888888888888888887652 356678888888899999999999999988752 33456
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hhHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHhhHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KEIYGCVVDLLGR---AGRVKEAYELIKSM-PFKP-DESVWG 486 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~ 486 (609)
++..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|++++|.+.++++ ...| +...+.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 8888888999999999999999988543211 12 3378889999999 99999999999887 3334 567788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 487 PLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.+..++.+.|++++|...+++++++.|.+...+..+
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 888999999999999999999999999877666655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-21 Score=195.04 Aligned_cols=336 Identities=12% Similarity=0.035 Sum_probs=263.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 257 (609)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56678888888899999999999999888753 3467788888888888999999999999888875 556778888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---h---hHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKD---L---ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 331 (609)
+|.+.|++++|...|+++.+.+ . ..|..+...+.. ..+..+...+...|+++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcCCHH
Confidence 8888888888888888875422 2 344444333211 12223344566778888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+..+|...|++++|+..|+++.+
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887764 45677788888889999999999988888763 4677888899999999999999999999987
Q ss_pred CCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHH
Q 007288 409 SGVRPDR-IVFMAV------------LTACSHAGLVDEGLKYFKSMNDYNVNPN-----KEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 409 ~g~~p~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 470 (609)
. .|+. ..+..+ ...|...|++++|..+|+.+.+.. |+ ...+..+...+.+.|++++|+
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4 4443 344443 788999999999999999997644 33 457888999999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH------------HHHhcC-----C
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN------------IYAAEG-----K 531 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~ 531 (609)
+.++++ ...| +...|..+..+|...|++++|...+++++++.|++...+..++. .|...| +
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999987 4445 67889999999999999999999999999999999999998884 455556 5
Q ss_pred hHHHHHHHHHH
Q 007288 532 WEEFAKFRKIM 542 (609)
Q Consensus 532 ~~~A~~~~~~m 542 (609)
.+++.+.++++
T Consensus 396 ~~~~~~~y~~~ 406 (450)
T 2y4t_A 396 KQEIIKAYRKL 406 (450)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=203.57 Aligned_cols=428 Identities=11% Similarity=-0.021 Sum_probs=275.7
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 007288 77 VVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDV 156 (609)
Q Consensus 77 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 156 (609)
...|..+...+.+.|++++|+..|+++.+... .+...+..+..++...|++++|.+.++.+++.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 34567777788888888888888888877532 25667777778888888888888888888776543 45566666666
Q ss_pred HHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHH
Q 007288 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236 (609)
Q Consensus 157 ~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 236 (609)
+...| ++++|...|+.+ ..+....+..+..+...+....|...++++..... +.
T Consensus 103 ~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~---------------------- 156 (537)
T 3fp2_A 103 NESLG-NFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE--GR---------------------- 156 (537)
T ss_dssp HHHHT-CHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHHcC-CHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc--cc----------------------
Confidence 66666 666666666432 22222222233344444444556666555533210 00
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHH--------hCC-chHHHHHHHH
Q 007288 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLI---TWNTIIAGYE--------KSG-SSECLNMFSK 304 (609)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~--------~~~-~~~a~~~~~~ 304 (609)
.....|+ ...+..+....+.+.+...+......+.. ....+...+. ..+ +++|..+|++
T Consensus 157 -----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 157 -----GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp -------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 0001111 12223333444444444444443332221 1222221111 113 5667777777
Q ss_pred hHHCCCCCC--------HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 305 MKSERFSPN--------CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376 (609)
Q Consensus 305 m~~~~~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (609)
+.+.. |+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...|...|++++|...|+.+.
T Consensus 228 ~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 228 LLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 66532 33 2245555566677788888888888888764 346777778888888888888888888776
Q ss_pred C---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHH
Q 007288 377 D---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIY 453 (609)
Q Consensus 377 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (609)
+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 381 (537)
T 3fp2_A 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVP 381 (537)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 3 356678888888888888889988888888753 2245678888888888899999999888886654 3356678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHhhHHHHHHHHHhC----------CChHHHHHHHHHHhccCCCC
Q 007288 454 GCVVDLLGRAGRVKEAYELIKSM----PFKP----DESVWGPLLGACKEH----------RLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~ 515 (609)
..+...+...|++++|.+.++++ +..+ ....+..+..++... |++++|...++++++..|++
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 88888888889999988888876 1111 122233444566666 88999999999999999988
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...+..++.+|...|++++|.+.+++..+...
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88889999999999999999999988887543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-20 Score=187.27 Aligned_cols=359 Identities=11% Similarity=0.006 Sum_probs=193.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 007288 149 VENSLMDVYATCCISMDNARLVFNDMKW---KNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACA 225 (609)
Q Consensus 149 ~~~~ll~~~~~~g~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 225 (609)
.+..+...+.+.| ++++|..+|+.+.+ .+...|..+...+...|++++|+..|+++.+.+. .+...+..+...+.
T Consensus 28 ~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 3444444444444 44444444444321 2445555566666666666666666666655432 23455556666666
Q ss_pred ccCCchhHHHHHHHHHHhCCCCCh---hHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHH
Q 007288 226 STGWVSFGKLIHAAVIKHGFGSNL---PVMNSI------------LDMYCRFDCLSDANQYFDEMTE---KDLITWNTII 287 (609)
Q Consensus 226 ~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 287 (609)
..|++++|...++.+.+.. +.+. .++..+ ...+.+.|++++|...|+.+.+ .+...+..+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 6666666666666665542 2222 344444 3345666666666666665532 2444555555
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (609)
..|...| .++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+... +
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~----~--- 255 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV----K--- 255 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----H---
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH----H---
Confidence 5555555 555555555554431 2234455555555555555555555555554432 1111112111000 0
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 367 DSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-----RIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 367 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
....+..+...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++.+
T Consensus 256 ------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 256 ------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp ------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0001122256667777777777777777663 343 235666667777777777777777776
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHH------------HHhCC-----ChHHHH
Q 007288 442 NDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE-SVWGPLLGA------------CKEHR-----LPNLGK 502 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~------------~~~~~-----~~~~a~ 502 (609)
.+.. +.+...|..+..+|...|++++|.+.++++ ...|+. ..+..+..+ |...| +.+++.
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 5543 235666777777777777777777777766 445543 333333321 23333 566778
Q ss_pred HHHHH-HhccCCCCcc----------hHHHHHHHHHhcCChHH
Q 007288 503 LAALR-VLDLKPNMMG----------TYIILSNIYAAEGKWEE 534 (609)
Q Consensus 503 ~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 534 (609)
..+++ +++..|++.. .+..+..+|...|+.+.
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 88886 6777775322 44556666666665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-19 Score=184.87 Aligned_cols=438 Identities=10% Similarity=0.004 Sum_probs=277.2
Q ss_pred ChhHHhHHHHHHHccCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007288 45 PSILATNLIKSYFDEGLIEEARTLFDEMPE---RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKA 121 (609)
Q Consensus 45 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (609)
....+..+...+.+.|++++|++.|+++.+ .+..+|..+...+.+.|++++|++.|+++.+.+. .+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 356788899999999999999999998763 4677899999999999999999999999988542 256788889999
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCh
Q 007288 122 CKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWK------NDVSWTTLITGYAHSGNG 195 (609)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 195 (609)
+...|++++|...++ ..... |+. .+..+..+...+ ....|...++.+... ........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~-~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERN-LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHH-HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHH-HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 33322 221 122233444444 667788888776542 222334445556666666
Q ss_pred hhHHHHHHHHHHCCCCCCHhhHHHHHH-HHHc--------cCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 007288 196 YGGLGVFKEMLLEGVEMNPYSFSIAVR-ACAS--------TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLS 266 (609)
Q Consensus 196 ~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~--------~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 266 (609)
+.+...+..... ..+....+...+. .+.. .|++++|..+++.+.+.. +.+..++..+.
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~---------- 243 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAA---------- 243 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH----------
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHH----------
Confidence 665554433322 1222222222221 1111 124555555555555432 12221111111
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 007288 267 DANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGL 345 (609)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 345 (609)
.++..+...+...| +++|...|++.... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 244 --------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 244 --------------LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred --------------HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 12333334445555 55566666655553 3445566666666667777777777777766654
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
+.+..++..+..+|...|++++|...|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 385 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA 385 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 33556677777777777777777777777652 345677777788888888888888888887752 33455777778
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCC-----CCChhHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHhhH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNV-----NPNKEIYGCVVDLLGRA----------GRVKEAYELIKSM-PFKP-DESVW 485 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~ 485 (609)
..+...|++++|...++++.+... ......+..+...+.+. |++++|...++++ ...| +...+
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888888888887743221 11233345556667777 8888888888877 2333 45677
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
..+..++...|++++|...+++++++.|.+.....
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 77888888888888888888888888886555433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-17 Score=162.41 Aligned_cols=306 Identities=11% Similarity=0.038 Sum_probs=220.0
Q ss_pred CHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 007288 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLITWNTIIAG 289 (609)
Q Consensus 213 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 289 (609)
|...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45567778888888999999999999988875 55677888888889999999999988887653 355677777788
Q ss_pred HHhCC-chHHHHHHHHhHHCCCCC---CH-HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007288 290 YEKSG-SSECLNMFSKMKSERFSP---NC-FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364 (609)
Q Consensus 290 ~~~~~-~~~a~~~~~~m~~~~~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (609)
+...| .++|...|++.... .| +. ..+..+.... . ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccC
Confidence 88888 88888888887764 34 22 2222221100 0 0112234556677777
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 365 ISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 365 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777652 355667777777788888888888888877642 335567777777788888888888888877
Q ss_pred hhcCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHhCCChHHHHH
Q 007288 442 NDYNVNPNKEIYG------------CVVDLLGRAGRVKEAYELIKSM-PFKPDES-----VWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 442 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~ 503 (609)
.+... .+...+. .+...+.+.|++++|...++++ ...|+.. .+..+..++...|++++|..
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 55432 1222222 2356688889999999888877 3334422 24446678889999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 504 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999888999999999999999999999999988743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-17 Score=161.72 Aligned_cols=324 Identities=10% Similarity=-0.002 Sum_probs=255.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 257 (609)
|+..+..+...+...|++++|+..|+++..... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 356788889999999999999999999988643 367788899999999999999999999999875 557789999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKDL------ITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 331 (609)
++...|++++|...|++..+.+. ..+..+...+ ....+..+...+...|+++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD----------------------EMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH----------------------HHHHHHHHHHHHHHccCHH
Confidence 99999999999999999865332 1222221110 0112344556677788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
.|...+..+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888887765 45667788888889999999999999888764 3567888888899999999999999999887
Q ss_pred CCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhhhcCCCCCh----hHHHHHHHHHhhcCCHHHHHH
Q 007288 409 SGVRPD-RIVFM------------AVLTACSHAGLVDEGLKYFKSMNDYNVNPNK----EIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 409 ~g~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 471 (609)
. .|+ ...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|++
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4 333 23332 2366688999999999999999665432 22 235567889999999999999
Q ss_pred HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 472 LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 472 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99988 3345 6778888999999999999999999999999999888888887776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-17 Score=158.28 Aligned_cols=283 Identities=11% Similarity=0.016 Sum_probs=192.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHH
Q 007288 247 SNLPVMNSILDMYCRFDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIA 322 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 322 (609)
.+..++..+...+...|++++|..+|+++.+ .+...+..++..+...| .++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444444455555555555555555555432 12233444444455555 555555555555432 224455666666
Q ss_pred HHHhhc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHH
Q 007288 323 ACATLA-ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKE 398 (609)
Q Consensus 323 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 398 (609)
.+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|+.+.+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 677777 7777777777776654 33456677777778888888888888777652 245667777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC--------CCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 399 AIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYN--------VNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|+
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888888753 3355678888888888888888888888874431 1334567888888888889999888
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCh
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY-AAEGKW 532 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 532 (609)
+.+++. ...| +...|..+..++...|++++|...+++++++.|++...+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888877 2233 5667778888888899999999999999999998888888888888 445554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=161.15 Aligned_cols=283 Identities=11% Similarity=0.060 Sum_probs=119.2
Q ss_pred HccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 007288 57 FDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHG 136 (609)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (609)
-+.|++++|.++++++.+|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47788999999999997665 8999999999999999999999753 578899999999999999999999888
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhh
Q 007288 137 MAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYS 216 (609)
Q Consensus 137 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 216 (609)
..++. .+++.+.+.++.+|.+.| +++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTN-RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 88774 455788999999999999 99998888864 67779999999999999999999999977 47
Q ss_pred HHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-c
Q 007288 217 FSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-S 295 (609)
Q Consensus 217 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~ 295 (609)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.| +
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888999999999999999988877 378889999999999999999977766654 34444456778888888 8
Q ss_pred hHHHHHHHHhHHCCCCCCHHhHHHHHHHHH--hhccHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHH
Q 007288 296 SECLNMFSKMKSERFSPNCFTFTSIIAACA--TLAALSCGQQVHAGIVRRGLDG------NLALANALIDMYAKCGNISD 367 (609)
Q Consensus 296 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 367 (609)
++|..+++...... +.-...|+-+...++ +.+++.+..+.|.. +.++++ +...|..++..|.+-++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 88888888776543 223334444444443 34444444444431 111222 34556666777777777776
Q ss_pred HHHHH
Q 007288 368 SQKIF 372 (609)
Q Consensus 368 A~~~~ 372 (609)
|....
T Consensus 301 A~~tm 305 (449)
T 1b89_A 301 AIITM 305 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-17 Score=160.30 Aligned_cols=347 Identities=10% Similarity=0.046 Sum_probs=153.2
Q ss_pred hcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHH
Q 007288 159 TCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHA 238 (609)
Q Consensus 159 ~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 238 (609)
+.| ++++|.+.++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 15 ~~~-~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344 788888888888555 47888888888888888888888652 577788888888888888888888777
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhH
Q 007288 239 AVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTF 317 (609)
Q Consensus 239 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~ 317 (609)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...| +++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 76664 4557778888889999999888887775 366678888888888888 88888888876 378
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHH
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGK 397 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (609)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888877 367888888888888888888877766654 33333446788888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCC------ChhHHHHHHHHHhhcCCHHHHH
Q 007288 398 EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNP------NKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
+|..+++...... +--...|+-|.-++++- ++++..+.++.. .+.+++| +...|.-++..|...++++.|.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999888887543 33445666666666654 333333333333 3444444 4677888899999999999888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 471 ELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 471 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
..+-+-+ |+...-..+.....+-.+.+.--+...-.++..| ...+.|..++...=+...+..++++.
T Consensus 303 ~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 303 ITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 8766542 2322223333444444444433333333333333 34555555555555555555554443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-15 Score=158.15 Aligned_cols=363 Identities=10% Similarity=-0.017 Sum_probs=247.9
Q ss_pred cchhhHHHHHHHh----cCCCHHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHhhH
Q 007288 147 IYVENSLMDVYAT----CCISMDNARLVFNDMKW-KNDVSWTTLITGYAH----SGNGYGGLGVFKEMLLEGVEMNPYSF 217 (609)
Q Consensus 147 ~~~~~~ll~~~~~----~g~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~ 217 (609)
...+..+...|.. .+ ++++|...|+...+ .+...+..|...|.. .++.++|++.|++..+.| +...+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3344444444444 44 55555555554332 244555556666666 666677777776666654 44455
Q ss_pred HHHHHHHHc----cCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHH
Q 007288 218 SIAVRACAS----TGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR----FDCLSDANQYFDEMTE-KDLITWNTIIA 288 (609)
Q Consensus 218 ~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 288 (609)
..+...+.. .+++++|...|+...+.| +...+..+...|.. .++.++|...|++..+ .+...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 566777777777666654 45556666666665 6677777777766543 35556666666
Q ss_pred HHHh----CC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007288 289 GYEK----SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT----LAALSCGQQVHAGIVRRGLDGNLALANALIDMY 359 (609)
Q Consensus 289 ~~~~----~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (609)
.|.. .+ .++|...|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6665 45 677777777776654 45556666666654 678888888888877654 345566677777
Q ss_pred Hh----cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 360 AK----CGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAH-----GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 360 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
.. .++.++|...|+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 7888889888888765 3556777777788777 89999999999988865 4556667777776655
Q ss_pred ---CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCCh
Q 007288 430 ---LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLP 498 (609)
Q Consensus 430 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 498 (609)
++++|+++|++..+.+ +...+..|...|.. .+++++|++.|++.-...+...+..|...|.. .++.
T Consensus 343 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 7889999999887754 67778888888888 78999999999887323366777888888887 8899
Q ss_pred HHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 007288 499 NLGKLAALRVLDLKPN---MMGTYIILSNIYAA 528 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 528 (609)
++|...++++.+.+|+ ++.....++.++..
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999998843 56666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-15 Score=153.31 Aligned_cols=409 Identities=7% Similarity=-0.016 Sum_probs=255.3
Q ss_pred CcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC--CChhhHHHHHHH
Q 007288 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW--KNDVSWTTLITG 188 (609)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~--~~~~~~~~li~~ 188 (609)
|...|..++.. ...|++++|..+++++++..+ .+...|..++..+.+.| ++++|..+|++... |+...|..++..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45566666663 556677777777777766432 24556666666666666 77777777766543 455555555532
Q ss_pred H-HhcCChhhHHH----HHHHHHH-CCCCCC-HhhHHHHHHHHHc---------cCCchhHHHHHHHHHHhCCCCC--hh
Q 007288 189 Y-AHSGNGYGGLG----VFKEMLL-EGVEMN-PYSFSIAVRACAS---------TGWVSFGKLIHAAVIKHGFGSN--LP 250 (609)
Q Consensus 189 ~-~~~g~~~~a~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~g~~~~--~~ 250 (609)
. ...|+.+.|.+ +|+.... .|..|+ ...|...+..... .|+++.|..+|+..++. +.+ ..
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~~~ 166 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINIEQ 166 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhHHH
Confidence 2 23455555544 4444433 243332 3334444433322 45555666666655541 111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHh------HHCC---CCCCH------
Q 007288 251 VMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKM------KSER---FSPNC------ 314 (609)
Q Consensus 251 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m------~~~~---~~p~~------ 314 (609)
.|..........|. ..+..++. ...+ +..|..++..+ .+.. +.|+.
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22211111000000 00011110 0123 45565555542 1111 23331
Q ss_pred --HhHHHHHHHHHhh----ccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHH
Q 007288 315 --FTFTSIIAACATL----AAL----SCGQQVHAGIVRRGLDGNLALANALIDMYAK-------CGNIS-------DSQK 370 (609)
Q Consensus 315 --~t~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~ 370 (609)
..|...+...... ++. +.+..+|++..... +.+...|..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 2333333222211 122 36777888887763 4567788888888775 79987 8999
Q ss_pred HHHhcCC---C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 371 IFSEMSD---R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR--IVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 371 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998874 4 4678889999999999999999999999984 5542 47888888888999999999999999764
Q ss_pred CCCCChhHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc----
Q 007288 445 NVNPNKEIYGCVVDL-LGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG---- 517 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---- 517 (609)
. +.+...|...... +...|++++|..+|++. ...| +...|..++..+.+.|+.+.|..++++++...|.++.
T Consensus 386 ~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp T-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred c-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 3 2233444332222 33689999999999977 3334 5788999999999999999999999999998775554
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.|...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77778888888999999999999998743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-14 Score=150.26 Aligned_cols=351 Identities=11% Similarity=0.042 Sum_probs=296.4
Q ss_pred CChhhHHHHHHHHHh----cCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCchhHHHHHHHHHHhCCCCC
Q 007288 177 KNDVSWTTLITGYAH----SGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACAS----TGWVSFGKLIHAAVIKHGFGSN 248 (609)
Q Consensus 177 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 248 (609)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 467778888888888 899999999999998874 56777778888887 899999999999998876 6
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CC-chHHHHHHHHhHHCCCCCCHHhHH
Q 007288 249 LPVMNSILDMYCR----FDCLSDANQYFDEMTEK-DLITWNTIIAGYEK----SG-SSECLNMFSKMKSERFSPNCFTFT 318 (609)
Q Consensus 249 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~-~~~a~~~~~~m~~~~~~p~~~t~~ 318 (609)
...+..|...|.. .+++++|...|++..+. +...+..|...|.. .+ .++|+..|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777888888988 88999999999987654 66778888888876 56 899999999998865 677777
Q ss_pred HHHHHHHh----hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCcchHHHHHHH
Q 007288 319 SIIAACAT----LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK----CGNISDSQKIFSEMSD-RDLVTWTSMMIG 389 (609)
Q Consensus 319 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 389 (609)
.+...+.. .++.++|...++...+.| +...+..+..+|.. .+++++|..+|+...+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877 899999999999998875 55677788888886 8999999999998775 466677788888
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 390 YGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA-----GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 390 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
|.. .+++++|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 887 899999999999998765 456777777778776 89999999999997765 456777788888
Q ss_pred hhcC---CHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----c
Q 007288 461 GRAG---RVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA----E 529 (609)
Q Consensus 461 ~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 529 (609)
...| ++++|++.|++.-...+...+..|...|.. .+++++|...++++.+.. ++..+..|+.+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 7766 789999999988333577888889899988 899999999999998865 47889999999998 8
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007288 530 GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~~~ 547 (609)
+++++|..+|++..+.+.
T Consensus 417 ~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 999999999999998774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-14 Score=155.81 Aligned_cols=449 Identities=8% Similarity=0.031 Sum_probs=324.0
Q ss_pred CCChhHHhHHHHHHHccCChhHHHHhhccCCC--------CCcccHHHHHHHHHcCCChhHHH-----------HHHHHH
Q 007288 43 KGPSILATNLIKSYFDEGLIEEARTLFDEMPE--------RDVVSWTVMIAGYTSFNCHNQAW-----------TVFVEM 103 (609)
Q Consensus 43 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~-----------~~~~~m 103 (609)
.-|.+--+.++.-||...++--|.-.+++-.- ..-..|-...+-+++..+++.=- ++.++-
T Consensus 895 ~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv 974 (1630)
T 1xi4_A 895 RENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQV 974 (1630)
T ss_pred hccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 44555556788889999998888887776321 01112333333333333322111 112111
Q ss_pred HHCC--CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCCh
Q 007288 104 VRNE--VNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGL--EGSIYVENSLMDVYATCCISMDNARLVFNDMKWKND 179 (609)
Q Consensus 104 ~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~ 179 (609)
.... -..|+.-.....++|...|.+.++.+++++..-.+- .-+...-+.++....+. +..+..++.+....-+
T Consensus 975 ~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d- 1051 (1630)
T 1xi4_A 975 VQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYD- 1051 (1630)
T ss_pred HHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhcc-
Confidence 1110 112344456678888899999999999999884321 12335566677666665 5566666666655333
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007288 180 VSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMY 259 (609)
Q Consensus 180 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 259 (609)
...+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++
T Consensus 1052 --~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1052 --APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHH
Confidence 4557788889999999999999962 12222233332 678899999888854 3578899999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHH
Q 007288 260 CRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHA 338 (609)
Q Consensus 260 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 338 (609)
.+.|++++|++.|.+. .|...|..++.++.+.| +++|.+.|...++.. ++....+.+..+|++.++++....+.
T Consensus 1116 l~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 9999999999999765 67788889999999999 999999999877654 34333445888999999888644443
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007288 339 GIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVF 418 (609)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (609)
+ .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 1 345566777999999999999999999996 58999999999999999999999976 356889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHH--h
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACK--E 494 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~ 494 (609)
..+-.+|...|++..|..+... +..+...+..++..|.+.|.+++|+++++.. +..|. ...|.-|..++. +
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 9999999999999888887653 3446777889999999999999999999776 55543 334544444444 4
Q ss_pred CCChHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKP-----NMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
.++..++.+.|..-..+.| .+...|..++..|.+.|+|+.|..
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5567778888887777666 677889999999999999999984
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-16 Score=151.62 Aligned_cols=265 Identities=11% Similarity=0.048 Sum_probs=227.3
Q ss_pred CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007288 278 KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALI 356 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (609)
.+...+..+...+...| +++|..+|+++.... +.+...+..++..+...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 35566777888888889 999999999998753 3345566677888899999999999999999875 45677888999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007288 357 DMYAKCG-NISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 357 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 432 (609)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998874 356789999999999999999999999999853 234567777899999999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHhhHHHHHHHHHhCCChHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF----------KPDESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~a 501 (609)
+|...++++.+.. +.+...+..+...+...|++++|...++++ .. ......+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999997754 346788999999999999999999999877 11 23456888999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 502 KLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 502 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
...++++++..|++...+..++.+|...|++++|.+.+++..+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-14 Score=150.93 Aligned_cols=440 Identities=10% Similarity=0.056 Sum_probs=291.0
Q ss_pred HhHHHHHHHccCChhHHHHhhccCC-CC-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHh
Q 007288 49 ATNLIKSYFDEGLIEEARTLFDEMP-ER-----DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKAC 122 (609)
Q Consensus 49 ~~~li~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (609)
-...++.|...|.+.+|+++++++. +| +....|.++....+. +..+..+..++.... + ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 3677888888999999999998876 22 234566677777666 556666666665421 1 33466778
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 007288 123 KGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVF 202 (609)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 202 (609)
...|.+++|..+|++.. ......+.++. ..+ ++++|.++.++.. +..+|..+..++.+.|++++|++.|
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88899999988888752 11122222322 555 8888888888773 4667888899999999999999998
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 007288 203 KEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLIT 282 (609)
Q Consensus 203 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 282 (609)
.+. -|...|..++..|.+.|++++|.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 664 367788888889999999999999998877754 44444456888888888888654443 3455666
Q ss_pred HHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007288 283 WNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK 361 (609)
Q Consensus 283 ~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (609)
|..+...|...| +++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 777788888888 88888888874 37888888888888888888888776 355777777788888
Q ss_pred cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--CCHHHHHHHH
Q 007288 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHA--GLVDEGLKYF 438 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--~~~~~a~~~~ 438 (609)
.|++..|...... ...+...+..++..|.+.|.+++|+.+++..... .+.. ..|.-+...+++. ++.-++.++|
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888877765 3334555667888888888888888888776643 3322 3554455555443 3444444444
Q ss_pred HHhhhcCCCC------ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------------CCCCCHhhHHHHHHHHHhCCCh
Q 007288 439 KSMNDYNVNP------NKEIYGCVVDLLGRAGRVKEAYELIKSM--------------PFKPDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 439 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~~ 498 (609)
.. +.++++ +...|.-++..|.+.|+++.|...+-+. ....+...|...+..|... .
T Consensus 1340 ~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~--~ 1415 (1630)
T 1xi4_A 1340 WS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--K 1415 (1630)
T ss_pred HH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh--C
Confidence 42 223333 4667888888888888888887444332 1223555566666666532 2
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..++.-+..++. | ..-+...+..+.+.|...-+..+++.+..
T Consensus 1416 P~~lndLl~~l~--~--rlD~~R~V~l~~~~~~l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1416 PLLLNDLLMVLS--P--RLDHTRAVNYFSKVKQLPLVKPYLRSVQN 1457 (1630)
T ss_pred hHHHHHHHHHhh--h--cCChHHHHHHHHHcCChHHhHHHHHHHHH
Confidence 233333333222 1 11123444555555555555555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-16 Score=156.66 Aligned_cols=279 Identities=11% Similarity=0.008 Sum_probs=209.2
Q ss_pred HhcCCHHHHHH-HHHhcCC--C-----ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 260 CRFDCLSDANQ-YFDEMTE--K-----DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 260 ~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
...|++++|.. .|++... + +...+..+...+.+.| +++|...|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33466777776 6665432 1 2345667777777777 788888888777653 33556777777778888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHH---------------HHHHHHh
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTS---------------MMIGYGA 392 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~ 392 (609)
+.|...++.+.+.. +.+..++..+..+|...|++++|...|+.+.+ | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877765 44667777888888888888888888887653 2 1112211 1333348
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGVR-PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999985322 147899999999999999999999999997654 3467889999999999999999999
Q ss_pred HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCChHHHHHH
Q 007288 472 LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-----------MGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 472 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
.++++ ...| +...+..+..++.+.|++++|...+++++++.|++ ...|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3344 56788889999999999999999999999988876 78999999999999999999988
Q ss_pred HHH
Q 007288 539 RKI 541 (609)
Q Consensus 539 ~~~ 541 (609)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-14 Score=152.13 Aligned_cols=409 Identities=10% Similarity=0.031 Sum_probs=281.5
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 007288 76 DVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMD 155 (609)
Q Consensus 76 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 155 (609)
+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678999998 478999999999999999852 3356678999999999999999999999998865 56667777775
Q ss_pred HHH-hcCCCHHHHHH----HHccCC------CCChhhHHHHHHHHHh---------cCChhhHHHHHHHHHHCCCCCCHh
Q 007288 156 VYA-TCCISMDNARL----VFNDMK------WKNDVSWTTLITGYAH---------SGNGYGGLGVFKEMLLEGVEMNPY 215 (609)
Q Consensus 156 ~~~-~~g~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~ 215 (609)
... ..| +.+.|.+ +|+... ..+...|...+..... .|+++.|..+|++.......+...
T Consensus 88 ~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 443 445 7766654 666432 2356778888877655 688999999999998731111112
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cC------CCC---
Q 007288 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------MT------EKD--- 279 (609)
Q Consensus 216 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--- 279 (609)
.|..........|. ..+.. ++. .+.+++..|..++.. +. .|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 23222211100110 00111 110 012334444443332 11 111
Q ss_pred -----hhHHHHHHHHHHhCC-----c----hHHHHHHHHhHHCCCCCCHHhHHHHHHHHHh-------hccHH-------
Q 007288 280 -----LITWNTIIAGYEKSG-----S----SECLNMFSKMKSERFSPNCFTFTSIIAACAT-------LAALS------- 331 (609)
Q Consensus 280 -----~~~~~~li~~~~~~~-----~----~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~~~~~------- 331 (609)
...|...+......+ . ..+..+|++..... +-+...|......+.. .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 234544443322221 1 36677888877642 3355666666666654 68876
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-c-chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RD-L-VTWTSMMIGYGAHGHGKEAIELFDEMV 407 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (609)
.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+ |+ . ..|..++..+.+.|++++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8899999888633355688889999999999999999999998873 43 2 478888888889999999999999999
Q ss_pred HCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-
Q 007288 408 KSGVRPDRIVFMAVLTA-CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPD- 481 (609)
Q Consensus 408 ~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~- 481 (609)
+.. +.+...|...... +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. +..|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 853 2223333332222 336899999999999996643 336788999999999999999999999987 22332
Q ss_pred -HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 482 -ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 482 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
...|...+......|+.+.+..+..++.+..|.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 447888888899999999999999999998883
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=155.48 Aligned_cols=364 Identities=9% Similarity=-0.020 Sum_probs=184.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHC-----C---CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhC------CC
Q 007288 181 SWTTLITGYAHSGNGYGGLGVFKEMLLE-----G---VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHG------FG 246 (609)
Q Consensus 181 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g------~~ 246 (609)
.||.|...+...|++++|++.|++..+. + -.....+|+.+...+...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444445555555555555555443321 0 11123345555555555555555555555444321 00
Q ss_pred -CChhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhCC-chHHHHHHHHhHHCCCCCCHHh
Q 007288 247 -SNLPVMNSILDMYCRF--DCLSDANQYFDEMTE--K-DLITWNTIIAG---YEKSG-SSECLNMFSKMKSERFSPNCFT 316 (609)
Q Consensus 247 -~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~-~~~a~~~~~~m~~~~~~p~~~t 316 (609)
....++..+..++.+. +++++|...|++..+ | +...+..+... +...+ .++|++.+++..+.. +.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 1123333333333332 345555555555432 2 22333333222 22233 455555555554421 112333
Q ss_pred HHHHHHHHH----hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHH
Q 007288 317 FTSIIAACA----TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIG 389 (609)
Q Consensus 317 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 389 (609)
+..+...+. ..++.+.|...+++..... +.+..++..+...|.+.|++++|...|++..+ | +..++..+..+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 333333322 2345556666666555543 33445555566666666666666666665542 2 23344444443
Q ss_pred HHh-------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh
Q 007288 390 YGA-------------------HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK 450 (609)
Q Consensus 390 ~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 450 (609)
|.. .+.++.|...+++..+.. +.+..++..+...+...|++++|+..|++..+....+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 322 234567888888877742 223457778888999999999999999998765543332
Q ss_pred h--HHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 451 E--IYGCVVD-LLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 451 ~--~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
. .+..+.. .+...|++++|+..|++. .+.|+...+... ...+..++++.++.+|+++.+|..++.+|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 2333332 234678999999999876 566665443332 34456678888899999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCcccCceeEE
Q 007288 527 AAEGKWEEFAKFRKIMRGMGSKKEVGMSWI 556 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 556 (609)
...|++++|++.|++..+.+...+...+|+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHCC-----------------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999998776544444454
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-16 Score=153.32 Aligned_cols=293 Identities=8% Similarity=0.026 Sum_probs=166.9
Q ss_pred hcCCCHHHHHH-HHccCCC---C----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc
Q 007288 159 TCCISMDNARL-VFNDMKW---K----NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV 230 (609)
Q Consensus 159 ~~g~~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 230 (609)
-.| ++++|.. .|+.... . +...+..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++
T Consensus 37 ~~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 344 7777776 6664432 1 34557777777777777777777777777653 23556667777777777777
Q ss_pred hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCchHHHHHHHHhHH
Q 007288 231 SFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDL---ITWNTIIAGYEKSGSSECLNMFSKMKS 307 (609)
Q Consensus 231 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~a~~~~~~m~~ 307 (609)
++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+.+. ..+..+... ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 177 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG----------------AG 177 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH----------------hh
Confidence 77777777777664 44566667777777777777777776665532111 000000000 00
Q ss_pred CCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchH
Q 007288 308 ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG-NLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTW 383 (609)
Q Consensus 308 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 383 (609)
...+. ..+. .+..+...|++++|...+..+.+..... +..++..+..+|.+.|++++|...|+.+.+ .+..+|
T Consensus 178 -~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 254 (368)
T 1fch_A 178 -GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254 (368)
T ss_dssp ----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 00000 0011 2223336777888888887777654221 456666777777777777777777766542 244566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC----------ChhHH
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP----------NKEIY 453 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~ 453 (609)
..+...+...|++++|+..|+++.+.. +.+..++..+...+.+.|++++|...|+++.+..... ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 666677777777777777777766632 2344566666667777777777777776664322111 14556
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 007288 454 GCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~ 474 (609)
..+..+|...|++++|..+++
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHhCChHhHHHhHH
Confidence 666666666666666665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=155.65 Aligned_cols=259 Identities=12% Similarity=-0.029 Sum_probs=198.8
Q ss_pred hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007288 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDM 358 (609)
Q Consensus 280 ~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (609)
...|..+...+.+.| +++|...|+++.... +.+...+..+...+...|+++.|...++++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344666677777777 777777777776643 3356677777788888888888888888877764 3456777888888
Q ss_pred HHhcCCHHHHHHHHHhcCC--CC-----------cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 007288 359 YAKCGNISDSQKIFSEMSD--RD-----------LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR-PDRIVFMAVLTA 424 (609)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~ 424 (609)
|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888888888887763 11 223445578889999999999999999985322 157899999999
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...|++++|+..++++.+.. +.+..++..+..+|...|++++|++.++++ ...| +..+|..+..++...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999997654 346888999999999999999999999987 3445 4778888999999999999999
Q ss_pred HHHHHHhccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 503 LAALRVLDLKPN------------MMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 503 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
..+++++++.|. +...|..++.++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998775 367899999999999999988877654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-14 Score=138.84 Aligned_cols=269 Identities=9% Similarity=-0.019 Sum_probs=204.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKDL----ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSC 332 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 332 (609)
-....|++..|+..++.....+. .....+..+|...| .++|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556778888887777655332 23445667777788 7777765543 135667778888888888888999
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 333 GQQVHAGIVRRGL-DGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 333 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
|...++.+...+. +.+...+..+..++...|++++|.+.++. ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 9999998887764 34566677778899999999999999998 457788999999999999999999999999985
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 007288 412 RPDRIVF---MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWG 486 (609)
Q Consensus 412 ~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 486 (609)
.|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++. ...| +..++.
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4554321 223344456689999999999997653 457889999999999999999999999987 4445 567888
Q ss_pred HHHHHHHhCCChHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 487 PLLGACKEHRLPNL-GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 487 ~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
.++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 89989999999875 6789999999999876543 4455556666655433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=149.42 Aligned_cols=230 Identities=12% Similarity=0.102 Sum_probs=194.8
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 389 (609)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999875 45788899999999999999999999998873 457789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CChhHHHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDR-----------IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PNKEIYGCVV 457 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 457 (609)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 23344578899999999999999999765432 2688999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF 535 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 535 (609)
..|...|++++|++.++++ ...| +..+|..+..++...|++++|+..++++++..|++..++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 007288 536 AKFRKIMRGM 545 (609)
Q Consensus 536 ~~~~~~m~~~ 545 (609)
...+++..+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-15 Score=144.52 Aligned_cols=252 Identities=9% Similarity=-0.027 Sum_probs=177.0
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNIS 366 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (609)
..+...| +++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|+++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence 3333444 444444444443321 1234444455555555555555555555555543 234445555566666666666
Q ss_pred HHHHHHHhcCC--C-CcchHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007288 367 DSQKIFSEMSD--R-DLVTWTSM--------------MI-GYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA 428 (609)
Q Consensus 367 ~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 428 (609)
+|...++.+.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Confidence 66666655542 1 11222222 22 3677889999999999998853 33677889999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHH
Q 007288 429 GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAAL 506 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 506 (609)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+..++...|++++|...++
T Consensus 186 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999997654 346788899999999999999999999887 3334 57788888999999999999999999
Q ss_pred HHhccCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 507 RVLDLKPN------------MMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 507 ~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
++++..|. +...+..++.+|...|++++|..++++..
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999997 68899999999999999999999986543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=141.73 Aligned_cols=246 Identities=13% Similarity=0.053 Sum_probs=200.0
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCH--HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNC--FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN 364 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (609)
.-....| +..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455667 8999998877654 33443 3456678899999999999986654 246677888999999999999
Q ss_pred HHHHHHHHHhcC----CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007288 365 ISDSQKIFSEMS----DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFK 439 (609)
Q Consensus 365 ~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
.++|.+.++++. .| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999874 24 455677777899999999999999987 4677799999999999999999999999
Q ss_pred HhhhcCCCCChhHH---HHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 440 SMNDYNVNPNKEIY---GCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 440 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
++.+.. |+.... ..++..+...|++++|..+|+++ ....+...|+.+..++.+.|++++|+..++++++.+|+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 997754 443221 23345555669999999999998 23347788999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHH-HHHHHHHHHhCCC
Q 007288 515 MMGTYIILSNIYAAEGKWEE-FAKFRKIMRGMGS 547 (609)
Q Consensus 515 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 547 (609)
++.++..++.++...|++++ +.++++++.+..+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999986 5789999887544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-17 Score=168.87 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=115.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007288 347 GNLALANALIDMYAKCGNISDSQKIFSEMS-------DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFM 419 (609)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 419 (609)
.-..+|++||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888886653 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC------HhhHHHHHHHH
Q 007288 420 AVLTACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD------ESVWGPLLGAC 492 (609)
Q Consensus 420 ~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~ 492 (609)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++....+.+-++...++... ++|+ ..+...|.+.|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~--f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT--FSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC--CCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc--cCCCCCCcccccchHHHHHHH
Confidence 99999999987 478899999999999999999999988776665444433333222 3332 33444455666
Q ss_pred HhCC
Q 007288 493 KEHR 496 (609)
Q Consensus 493 ~~~~ 496 (609)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=138.59 Aligned_cols=274 Identities=8% Similarity=-0.039 Sum_probs=174.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHH
Q 007288 178 NDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILD 257 (609)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 257 (609)
+...|..+...+...|++++|..+|+++..... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 445677778888888888888888888877532 366677777778888888888888888888764 456667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHH--HHHhhccHHH
Q 007288 258 MYCRFDCLSDANQYFDEMTEKD---LITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIA--ACATLAALSC 332 (609)
Q Consensus 258 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~~~~ 332 (609)
.|...|++++|...++++.+.+ ...+..+.. ..|+......+.. .+...|+++.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ---------------------ADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH---------------------HHHHHHHHHHHHHhHHHHHcccHHH
Confidence 7777788877777776654211 111111100 0011111111212 2566777888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007288 333 GQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409 (609)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (609)
|...+..+.+.. +.+..++..+..+|.+.|++++|...++.+.+ .+..+|..+...+...|++++|...++++.+.
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888888777664 33566667777777777777777777776652 24556667777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC-----------ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-----------NKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 410 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2345566677777777777777777777764433221 3556666666777777777776666544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-13 Score=142.51 Aligned_cols=381 Identities=10% Similarity=-0.055 Sum_probs=204.2
Q ss_pred CcchHHHHHHHhhCCCChHHHHHHHHHHHHh-----C--CCC-CcchhhHHHHHHHhcCCCHHHHHHHHccCCC------
Q 007288 111 NAFTLSSVLKACKGMKSLSNAALVHGMAIKE-----G--LEG-SIYVENSLMDVYATCCISMDNARLVFNDMKW------ 176 (609)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------ 176 (609)
....|+.+...+...|++++|.+.+++.++. + ..| ...+|+.+..+|...| ++++|...|+...+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcc
Confidence 4556788888888888888888888877653 1 122 2346677777777777 77777777654321
Q ss_pred -----CChhhHHHHHHHHHhc--CChhhHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCchhHHHHHHHHHHhCCC
Q 007288 177 -----KNDVSWTTLITGYAHS--GNGYGGLGVFKEMLLEGVEMNPYSFSIAVRA---CASTGWVSFGKLIHAAVIKHGFG 246 (609)
Q Consensus 177 -----~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~ 246 (609)
....+++.+..++... +++++|++.|++....... +...+..+..+ +...++.++|.+.++..++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1234455444444443 4577777777777664211 23333333332 334566677777777776654 3
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCC-HHhH
Q 007288 247 SNLPVMNSILDMYCR----FDCLSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPN-CFTF 317 (609)
Q Consensus 247 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~-~~t~ 317 (609)
.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...| .++|...|.+..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 344455444444333 3455666666665432 34455666666666666 67777766666653 232 3333
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcC
Q 007288 318 TSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS---DRDLVTWTSMMIGYGAHG 394 (609)
Q Consensus 318 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 394 (609)
..+...+...+....+.. ...........+..+.|...|+... ..+..++..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 333333321111000000 0000001111233566777777665 245678889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRI--VFMAVLT-ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYE 471 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
++++|++.|++..+....|... .+..+.. .....|++++|+..|++..+.. |+........ ..+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKMK---------DKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH---------HHHHH
Confidence 9999999999999864333222 2233322 2457899999999999987744 4433322222 22333
Q ss_pred HHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 472 LIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 472 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
++++. ...| +..+|..|..++...|++++|++.|+++++++|.++.....++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33332 2233 5678999999999999999999999999999997777666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=159.33 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=120.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVK---SGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCV 456 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (609)
..|||+||.+|++.|++++|.++|.+|.+ .|+.||..||++||.+||+.|++++|.++|++|.+.|+.||..+|+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCH-HHHHHHHHhC---CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC----C-----CcchHHHHH
Q 007288 457 VDLLGRAGRV-KEAYELIKSM---PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP----N-----MMGTYIILS 523 (609)
Q Consensus 457 ~~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~-----~~~~~~~l~ 523 (609)
|+++++.|+. ++|.++|++| |+.||..+|++++.++.+. .+++.+.+..| + ...+...|-
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 9999999985 7899999999 8999999999998655443 23333333332 1 123444577
Q ss_pred HHHHhcC
Q 007288 524 NIYAAEG 530 (609)
Q Consensus 524 ~~~~~~g 530 (609)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-14 Score=131.81 Aligned_cols=220 Identities=11% Similarity=0.018 Sum_probs=181.9
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----cchHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R----D----LVTWT 384 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~ 384 (609)
..+..+...+...|++++|...+..+.+.. .+...+..+..+|...|++++|...|+...+ | + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888887776 6677788888888888888888888887763 1 1 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG 464 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 8889999999999999999999884 4553 34566788999999999987644 335677888999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007288 465 RVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIM 542 (609)
Q Consensus 465 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 542 (609)
++++|+..++++ ...| +...|..+..++...|++++|...++++++..|+++..+..++.+|...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999887 3333 57788888899999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 007288 543 RGMG 546 (609)
Q Consensus 543 ~~~~ 546 (609)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8743
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-14 Score=129.46 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=154.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 346 DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
+++...+..+...+.+.|++++|...|+...+ .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777888888899999999999988764 355778888889999999999999999998852 23456888888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHH
Q 007288 423 TACSHA-----------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLG 490 (609)
Q Consensus 423 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 490 (609)
..+... |++++|+..+++..+... -+...+..+..++...|++++|+..|++. ....+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 888888 999999999999977553 35778889999999999999999999887 21267888999999
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
++...|++++|+..++++++.+|+++..+..++.++...|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-13 Score=126.96 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--Cc----hhHHHH
Q 007288 282 TWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLD--GN----LALANA 354 (609)
Q Consensus 282 ~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 354 (609)
.|..+...+...| +++|+..|++..+.. .+...+..+...+...|+++.|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4555666666666 777777777766655 66677777778888888888888888877654311 11 467788
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD--RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLV 431 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~ 431 (609)
+..+|.+.|++++|...|+.+.+ |+ ...+...|++++|...++++... .|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 88888888999998888888764 33 24566778899999999998884 343 45788888889999999
Q ss_pred HHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 007288 432 DEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVL 509 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 509 (609)
++|...++++.+.. +.+...+..+...+...|++++|+..+++. ...| +...|..+..++...|++++|...+++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999997655 336788889999999999999999999887 3334 46778888899999999999999999999
Q ss_pred ccC------CCCcchHHHHHH
Q 007288 510 DLK------PNMMGTYIILSN 524 (609)
Q Consensus 510 ~~~------p~~~~~~~~l~~ 524 (609)
++. |.+...+..+..
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHH
T ss_pred HhChhhcCCCchHHHHHHHHH
Confidence 988 766665555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-13 Score=126.07 Aligned_cols=237 Identities=8% Similarity=-0.093 Sum_probs=185.2
Q ss_pred chHHHHHHHHhHHCCCC---CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFS---PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
+++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 67788888887765321 135567778888889999999999999988875 44677888899999999999999999
Q ss_pred HHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 372 FSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 372 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
|+.+.+ .+...+..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...++...... ++
T Consensus 100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 176 (275)
T 1xnf_A 100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK 176 (275)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 998873 35778999999999999999999999999984 4555555555556677899999999998885543 33
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+...+. ++..+...++.++|++.+++. ...|+ ...+..+..++...|++++|...++++++.+|++... .
T Consensus 177 ~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 252 (275)
T 1xnf_A 177 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---H 252 (275)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---H
T ss_pred chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---H
Confidence 444444 777788888999999999887 33332 4678888899999999999999999999999976544 3
Q ss_pred HHHHHhcCChHHHHHHH
Q 007288 523 SNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 523 ~~~~~~~g~~~~A~~~~ 539 (609)
+.++...|++++|++.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 66788889999988776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-12 Score=129.91 Aligned_cols=375 Identities=7% Similarity=-0.040 Sum_probs=216.4
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCH---HHHHHHHccCCCCChhhHHHHHHHHHhcC--
Q 007288 119 LKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISM---DNARLVFNDMKWKNDVSWTTLITGYAHSG-- 193 (609)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 193 (609)
...+.+.|++++|.+++++..+.| +...+..|...|...| +. ++|...|+...+.+...+..|...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 344555667777777777776665 2333444444454455 55 77777777766556666666666555554
Q ss_pred ---ChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCch---hHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 007288 194 ---NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVS---FGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSD 267 (609)
Q Consensus 194 ---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 267 (609)
++++|+..|++..+.|.. ..+..+...+...+..+ .+.+.+......| +......+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 667888888888776543 24555555555444332 2333444443333 23344455555555553332
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc---cHHHHHHHHHHHHHhC
Q 007288 268 ANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA---ALSCGQQVHAGIVRRG 344 (609)
Q Consensus 268 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 344 (609)
+... +..+++.... .+...+..+...+...| +.++|...|+...+.|
T Consensus 160 ~~~~--------------------------a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 160 HLDD--------------------------VERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GHHH--------------------------HHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred CHHH--------------------------HHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 2221 1122222211 12225555666666666 7777777777777766
Q ss_pred CCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCcchHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 345 LDGNLALANALIDMYAKC----GNISDSQKIFSEMSDRDLVTWTSMMIG-Y--GAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
+++...+..|..+|... +++++|...|+.....+...+..+... + ...+++++|++.|++..+.| +...
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 33444445566666554 688888888888773355667777666 3 46789999999999998876 5667
Q ss_pred HHHHHHHHhccC-----CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhhHHHH
Q 007288 418 FMAVLTACSHAG-----LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSMPFKPDESVWGPL 488 (609)
Q Consensus 418 ~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l 488 (609)
+..|...|. .| ++++|..+|++.. .-+...+..|...|.. ..++++|...|++.-..-+......|
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 777777776 45 8999999999887 3366777777777765 34899999999887323345566666
Q ss_pred HHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHH--HhcCChHHHHHHHHHHHh
Q 007288 489 LGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIY--AAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 489 ~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 544 (609)
...|.. ..+.++|...++++.+.++.. ....+..+. ...++..+|.++.++.++
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 666664 468899999999998877633 333333333 233456677777776655
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-12 Score=119.60 Aligned_cols=224 Identities=9% Similarity=-0.021 Sum_probs=175.1
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCcchHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK----CGNISDSQKIFSEMSD-RDLVTWTSMM 387 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 387 (609)
+..++..+...+...|++++|...|+...+. .+...+..+...|.. .|++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455666666677777788888777777763 344566677777777 8888888888877654 3566777788
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 007288 388 IGYGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459 (609)
Q Consensus 388 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 88888 888889988888888864 66778888888888 889999999998887755 56677777888
Q ss_pred Hhh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 007288 460 LGR----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA--- 528 (609)
Q Consensus 460 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 528 (609)
|.. .+++++|+..+++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 877 88999999888877222356677778888888 8999999999999988876 6788889999998
Q ss_pred -cCChHHHHHHHHHHHhCCC
Q 007288 529 -EGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 529 -~g~~~~A~~~~~~m~~~~~ 547 (609)
.+++++|...+++..+.|.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 8999999999999887665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=121.48 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 4455556666666777776666666542 245566777777777788888888887777642 235567777777788
Q ss_pred ccCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
..|++++|..+++++.+.+..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888775532333 4556677777888888888888888776 2233 46677777788888888888888
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 504 AALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 504 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.++++++..|++...+..++.+|...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888888778888888888888888888888888887644
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-12 Score=131.64 Aligned_cols=343 Identities=10% Similarity=0.002 Sum_probs=217.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCc---hhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWV---SFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
+...+.+.|++++|++.|++..+.|. ...+..+...+...|+. ++|...|+...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 34455566777777777777666542 22333333344445555 6677777666643 34444555554444
Q ss_pred cC-----CHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCC-c---hHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHH
Q 007288 262 FD-----CLSDANQYFDEMTEK-DLITWNTIIAGYEKSG-S---SECLNMFSKMKSERFSPNCFTFTSIIAACATLAALS 331 (609)
Q Consensus 262 ~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~-~---~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 331 (609)
.+ ++++|...|++..++ +...+..|...|...+ . .++.+.+......| +......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 33 566777777665443 3345556666665554 3 23444555554444 3445555666666666444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CCcchHHHHHHHHHhc----CCHHHHHH
Q 007288 332 CGQQVHAGIVRRGLDGNLALANALIDMYAKCG---NISDSQKIFSEMSD---RDLVTWTSMMIGYGAH----GHGKEAIE 401 (609)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 401 (609)
.+......+.+.-...++..+..|..+|.+.| +.++|...|+...+ ++...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 44443333333223344458888999999999 99999999998864 2333446677777655 79999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-----CHHHHHHHH
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTA-C--SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG-----RVKEAYELI 473 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 473 (609)
.|++.. .| +...+..|... + ...+++++|..+|++..+.| +...+..|...|. .| ++++|++.|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 999987 33 34455555555 3 56899999999999998766 6677777888887 55 999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhC
Q 007288 474 KSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 474 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 545 (609)
++.- .-+...+..|...|.. ..++++|...++++.+.+ ++.....|+.+|.. ..+.++|..++++..+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9987 5577777777777766 449999999999998754 57788999999985 46899999999999998
Q ss_pred CCc
Q 007288 546 GSK 548 (609)
Q Consensus 546 ~~~ 548 (609)
|..
T Consensus 388 g~~ 390 (452)
T 3e4b_A 388 DTP 390 (452)
T ss_dssp CCH
T ss_pred CCH
Confidence 864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=122.35 Aligned_cols=175 Identities=12% Similarity=-0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
..+..+|...|++++|...|+...+ .+...|..+...|...|++++|+..|++..+. .+.+...+..+...+...+
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence 3344444444444444444443331 12234444444444444444444444444432 1112233333331222233
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HhhHHHHHHHHHhCC
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR---VKEAYELIKSM----PFKPD------ESVWGPLLGACKEHR 496 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~ 496 (609)
++++|...|+++.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ...|..+...+...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 5555555555554322 1123444444444444444 44444444333 11122 135555667777778
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
++++|...++++++++|+++.....+.......
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 888888888888888887776666665555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-12 Score=116.58 Aligned_cols=204 Identities=10% Similarity=-0.023 Sum_probs=150.6
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
..+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 345555556666666666666666666553 33455666677777777777777777776652 35567777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
..|++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877434554 4577778888888999999999998886654 335777888889999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 471 ELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 471 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
..++++ ...| +...+..+...+...|++++|...++++.+..|+++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999887 3334 5566777778889999999999999999999997665443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=116.26 Aligned_cols=196 Identities=10% Similarity=-0.016 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34445555566666666666666655442 234566666666777777777777777766642 23455666677777
Q ss_pred hcc-CCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH
Q 007288 426 SHA-GLVDEGLKYFKSMNDYNVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 426 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 501 (609)
... |++++|...++++.+.+..| +...+..+...+...|++++|++.++++ ...| +...+..+..++...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 777 77777777777775522222 2456666777777777777777777665 2223 356666677777777777778
Q ss_pred HHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 502 KLAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 502 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...++++++..| .+...+..++..+...|+.++|..+++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777 77777777777777778887777777777653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=122.36 Aligned_cols=198 Identities=9% Similarity=0.086 Sum_probs=131.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 424 (609)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666777777777777776643 245566777777777888888888888777642 2355677777777
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...|++++|...++++.+.. +.+...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888776544 235667777778888888888888888776 2223 5666777777888888888888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 503 LAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..++++++..|.+...+..++.+|...|++++|...++++.+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 888888888887788888888888888888888888888876433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=121.36 Aligned_cols=213 Identities=10% Similarity=0.079 Sum_probs=152.6
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 389 (609)
....+..+...+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455556666667777777777777776643 34566677777788888888888888877652 356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999988753 3466788888889999999999999999986654 34677888899999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 470 YELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 470 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
++.++++ ...| +..++..+..++...|++++|...++++++..|++...+..+......
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 9999887 2233 567888888999999999999999999999999888877776655443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-11 Score=112.48 Aligned_cols=208 Identities=10% Similarity=-0.048 Sum_probs=164.8
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 389 (609)
+...+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+.+.+ .+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34556677777788888888888888877764 34566778888888888888888888887763 356678888889
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHH
Q 007288 390 YGAH-GHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVK 467 (609)
Q Consensus 390 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999988444454 4578888889999999999999999986654 235778888999999999999
Q ss_pred HHHHHHHhC-CCC--CCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 468 EAYELIKSM-PFK--PDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 468 ~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999887 222 3566676777888999999999999999999999776655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-12 Score=119.53 Aligned_cols=229 Identities=8% Similarity=-0.025 Sum_probs=183.3
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcc----hHHHHHHH
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RDLV----TWTSMMIG 389 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~ 389 (609)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+...+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556667788899999999999888764 34555788888899999999999999988764 2222 48889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+...|++++|++.|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999853 2355789999999999999999999999997653 33567777777344456699999
Q ss_pred HHHHHhC-CCCCC-HhhHHHHHHHHHhCCC---hHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhcCChHHHH
Q 007288 470 YELIKSM-PFKPD-ESVWGPLLGACKEHRL---PNLGKLAALRVLDLK---PNM-----MGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 470 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~ 536 (609)
++.++++ ...|+ ...+..+..++...++ +++|...++++++.. |+. ...|..++..|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988 34454 5677777788888888 888999999998865 431 257888999999999999999
Q ss_pred HHHHHHHhCCC
Q 007288 537 KFRKIMRGMGS 547 (609)
Q Consensus 537 ~~~~~m~~~~~ 547 (609)
+.+++..+..+
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 99999987544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-12 Score=125.93 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=179.7
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCcchHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN-ISDSQKIFSEMSD---RDLVTWTSMMIGY 390 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 390 (609)
..|..+...+...|++++|...++.+++.. +-+...|+.+..++...|+ +++|+..|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556666667777777877777777664 4456677778888888886 8888888888773 3567888888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh-cCCHHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR-AGRVKEA 469 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 469 (609)
...|++++|+..|+++++.. .-+...|..+..++...|++++|+..++++.+.+. -+...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999998853 23566888889999999999999999999977663 367888888888888 6665777
Q ss_pred -----HHHHHhC-CCCC-CHhhHHHHHHHHHhCC--ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC---------C
Q 007288 470 -----YELIKSM-PFKP-DESVWGPLLGACKEHR--LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG---------K 531 (609)
Q Consensus 470 -----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~ 531 (609)
++.+++. ...| +...|..+..++...| ++++|.+.++++ +.+|++...+..++.+|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4666665 4455 4668888888888888 689999999988 889999999999999999875 2
Q ss_pred hHHHHHHHHHH-HhCC
Q 007288 532 WEEFAKFRKIM-RGMG 546 (609)
Q Consensus 532 ~~~A~~~~~~m-~~~~ 546 (609)
+++|+++++++ .+.+
T Consensus 334 ~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 334 LNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 58999999998 6643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-11 Score=113.73 Aligned_cols=222 Identities=12% Similarity=-0.040 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 007288 281 ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACAT----LAALSCGQQVHAGIVRRGLDGNLALANAL 355 (609)
Q Consensus 281 ~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (609)
.++..+...+...+ .++|...|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444445555555 55555555555552 234455566666666 777777777777777665 56666777
Q ss_pred HHHHHh----cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 356 IDMYAK----CGNISDSQKIFSEMSD-RDLVTWTSMMIGYGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 356 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..+|.. .+++++|...|+...+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 777777 8888888888877664 355677778888888 899999999999988865 5667777777787
Q ss_pred c----cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 007288 427 H----AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE---- 494 (609)
Q Consensus 427 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 494 (609)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++.-...+...+..+...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 7 889999999999987654 46777788888888 99999999999887212236677778888888
Q ss_pred CCChHHHHHHHHHHhccCCC
Q 007288 495 HRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+++++|...++++.+.+|+
T Consensus 235 ~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SCCSTTHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHHHHcCCH
Confidence 89999999999999999884
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-12 Score=110.30 Aligned_cols=167 Identities=12% Similarity=0.121 Sum_probs=141.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 379 DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
+...|..+...|...|++++|++.|++..+.. +-+..++..+...+.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45678888889999999999999999988852 23556888888899999999999999998866543 35667777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
.+...++++.|.+.+.+. ...| +...+..+..++.+.|++++|+..++++++++|.++.++..++.+|.+.|++++|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999998887 3334 56778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 007288 537 KFRKIMRGMGS 547 (609)
Q Consensus 537 ~~~~~m~~~~~ 547 (609)
+.|++..+..+
T Consensus 162 ~~~~~al~~~p 172 (184)
T 3vtx_A 162 KYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHhCCc
Confidence 99999987543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-12 Score=119.33 Aligned_cols=219 Identities=13% Similarity=-0.003 Sum_probs=179.7
Q ss_pred hhccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGL---DGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEA 399 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 399 (609)
..|++++|...++.+.+... +.+..++..+...|...|++++|...|+.+.+ .+..+|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45889999999999987642 22467788899999999999999999999873 3578899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007288 400 IELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF 478 (609)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 478 (609)
...|+++.+.. +.+..++..+...+...|++++|...++++.+.. |+..........+...|++++|...+++. ..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999853 3356789999999999999999999999997754 44444455556667789999999999766 22
Q ss_pred CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 479 KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN----MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 479 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.|+......++..+...++.++|...++++++..|. +...+..++.+|...|++++|...+++..+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 333333345778888889999999999999887763 367899999999999999999999999988643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-12 Score=114.31 Aligned_cols=191 Identities=13% Similarity=0.040 Sum_probs=100.3
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIG 389 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 389 (609)
+...+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...|++..+ | +...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444444455555555555555555554433 23444455555555555555555555555442 2 33455555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 390 YGAH-----------GHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 390 ~~~~-----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
+... |++++|+..|++..+. .| +...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 5555 6666666666666653 33 34456666666666666666666666665555 4566666666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRV 508 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 508 (609)
.+|...|++++|+..|++. ...| +...+..+..++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665 2233 3455555666666666666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-11 Score=121.04 Aligned_cols=246 Identities=9% Similarity=0.071 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc-HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 280 LITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA-LSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 280 ~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
...|+.+...+...| .++|+..|++.+... +-+...|..+..++...|+ +++|...++++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356777778888888 899999999888742 2246677888888889996 999999999999876 456788899999
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-AGLVDE 433 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~ 433 (609)
++.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. .-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999873 467889999999999999999999999999853 2356788889988888 566577
Q ss_pred H-----HHHHHHhhhcCCCCChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhCC---------
Q 007288 434 G-----LKYFKSMNDYNVNPNKEIYGCVVDLLGRAG--RVKEAYELIKSMPFKPD-ESVWGPLLGACKEHR--------- 496 (609)
Q Consensus 434 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~--------- 496 (609)
| +..+++..+... -+...|..+..++...| ++++|++.+.++...|+ ...+..+..++.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 588888876552 35778888999999888 68999999988855554 567777788887764
Q ss_pred ChHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 007288 497 LPNLGKLAALRV-LDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 497 ~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 529 (609)
..++|+.+++++ .+++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999998888888887776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=132.83 Aligned_cols=208 Identities=6% Similarity=-0.037 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 007288 330 LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNI-SDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDE 405 (609)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (609)
++.+...+...... .+.+...+..+..+|...|++ ++|...|++..+ | +...|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555554433 234667778888888888999 999988888763 3 567899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc--------CCHHH
Q 007288 406 MVKSGVRPDRIVFMAVLTACSHA---------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA--------GRVKE 468 (609)
Q Consensus 406 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 468 (609)
..+. .|+...+..+...+... |++++|+..+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9984 57778899999999999 99999999999997765 33678889999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 469 AYELIKSM-PFKP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 469 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
|++.|++. ...| +...|..+..++...|++++|...++++++++|++...+..++.++...|++++|++.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988 4455 6788899999999999999999999999999999999999999999999999999975543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=130.23 Aligned_cols=255 Identities=13% Similarity=0.040 Sum_probs=166.3
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCC-H----HhHHHHHHHHHhhccHHHHHHHHHHHHHh----C-CCCchhHHHHHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPN-C----FTFTSIIAACATLAALSCGQQVHAGIVRR----G-LDGNLALANALI 356 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 356 (609)
..+...| +++|...|++..+.. |+ . ..+..+...+...|+++.|...+++..+. + .+....++..+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 3344444 455555555444431 22 1 24555555556666666666666655432 1 112234556666
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----C----CcchHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC-
Q 007288 357 DMYAKCGNISDSQKIFSEMSD-----R----DLVTWTSMMIGYGAHGH-----------------GKEAIELFDEMVKS- 409 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 409 (609)
..|...|++++|...|++..+ . ...++..+...|...|+ +++|++.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 677777777777777666542 1 22356667777777788 78888777776542
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-
Q 007288 410 ---GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KEIYGCVVDLLGRAGRVKEAYELIKSM-PF- 478 (609)
Q Consensus 410 ---g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~- 478 (609)
+-.+. ..++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|.+.+++. ..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11111 236777778888889999998888887432211 11 236778888888999999998888776 11
Q ss_pred --CC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 479 --KP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 479 --~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.. ...++..+..++...|++++|...+++++++.+.. ...+..++.+|...|++++|...+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 14566777788999999999999999988764422 34788899999999999999999998875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-12 Score=124.92 Aligned_cols=94 Identities=6% Similarity=-0.014 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhCC-chHHHHHHHHhHHC----CCCC-CH
Q 007288 248 NLPVMNSILDMYCRFDCLSDANQYFDEMTE--K-D----LITWNTIIAGYEKSG-SSECLNMFSKMKSE----RFSP-NC 314 (609)
Q Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~-~~~a~~~~~~m~~~----~~~p-~~ 314 (609)
....+......+...|++++|...|++..+ + + ...|..+...+...| +++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555666667777777777777766532 2 2 134555555666666 66666666554331 1111 12
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIV 341 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~ 341 (609)
..+..+...+...|+++.|...+....
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234444445555555555555555444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-12 Score=124.66 Aligned_cols=289 Identities=10% Similarity=0.029 Sum_probs=175.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhH
Q 007288 216 SFSIAVRACASTGWVSFGKLIHAAVIKHGFGSN----LPVMNSILDMYCRFDCLSDANQYFDEMTE-----K----DLIT 282 (609)
Q Consensus 216 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 282 (609)
.+......+...|++++|...++.+.+.+ +.+ ..++..+...|...|++++|...|++..+ . ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444555555556655555555542 112 23555666666666777766666655421 1 2346
Q ss_pred HHHHHHHHHhCC-chHHHHHHHHhHHCCC-CCC----HHhHHHHHHHHHhhcc--------------------HHHHHHH
Q 007288 283 WNTIIAGYEKSG-SSECLNMFSKMKSERF-SPN----CFTFTSIIAACATLAA--------------------LSCGQQV 336 (609)
Q Consensus 283 ~~~li~~~~~~~-~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~ 336 (609)
+..+...|...| +++|...+++...... .++ ..++..+...+...|+ ++.|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 777888888999 9999998888765210 011 3356666666777777 6666665
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 007288 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRP 413 (609)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 413 (609)
+....+. +.....+ ...++..+...|...|++++|...+++..+.. -.+
T Consensus 170 ~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 170 YEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 5544321 1111100 11345556666666677777777666665421 011
Q ss_pred C----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcC----CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 007288 414 D----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYN----VNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKP 480 (609)
Q Consensus 414 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 480 (609)
+ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|.+.+++. +..+
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 1 1266667777777888888887777763321 111 1456677778888888888888887766 1111
Q ss_pred C----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC------CCcchHHHHHHHHHhcCChH
Q 007288 481 D----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP------NMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 481 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 533 (609)
+ ..++..+..++...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 2 44666777888899999999999998877532 23556777888888887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=119.55 Aligned_cols=256 Identities=15% Similarity=0.101 Sum_probs=173.1
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCC-----HHhHHHHHHHHHhhccHHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPN-----CFTFTSIIAACATLAALSCGQQVHAGIVRR----GLD-GNLALANALI 356 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 356 (609)
..+...| +++|...|++..+.. |+ ...+..+...+...|+++.|...+....+. +.. ....++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3444445 555555555554432 22 234555556666666666666666654432 111 1244566677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGH--------------------GKEAIELFDEMV 407 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 407 (609)
..|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777888777777776542 12 2366777777888888 888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-C----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007288 408 KS----GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-P----NKEIYGCVVDLLGRAGRVKEAYELIKSM- 476 (609)
Q Consensus 408 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 476 (609)
.. +-.|. ..++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11111 236777888888999999999999887432111 1 1336778888999999999999988876
Q ss_pred ---CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 477 ---PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 477 ---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11112 4566777788999999999999999998865422 3478889999999999999999999998
Q ss_pred hC
Q 007288 544 GM 545 (609)
Q Consensus 544 ~~ 545 (609)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 74
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-09 Score=111.13 Aligned_cols=424 Identities=10% Similarity=0.021 Sum_probs=264.0
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCC---hHHHHHHHHHHHHhCC-CCCcchh
Q 007288 75 RDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKS---LSNAALVHGMAIKEGL-EGSIYVE 150 (609)
Q Consensus 75 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 150 (609)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.+. ++.+..+|++.+...+ .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36677888888888888888888888888774 33355566667777667777 8888888888777652 3566677
Q ss_pred hHHHHHHHhcCCCH--------HHHHHHHccCC-------CCChhhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 007288 151 NSLMDVYATCCISM--------DNARLVFNDMK-------WKNDVSWTTLITGYAH---------SGNGYGGLGVFKEML 206 (609)
Q Consensus 151 ~~ll~~~~~~g~~~--------~~A~~~~~~~~-------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 206 (609)
...+....+.+ +. +...++|+... ..+...|...+..... +++++.+..+|+..+
T Consensus 143 ~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 143 LSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77776655544 32 23345565421 1234566666654432 334566777777766
Q ss_pred HCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cCC--
Q 007288 207 LEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDE-------MTE-- 277 (609)
Q Consensus 207 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~-- 277 (609)
......-..+|... ..+.+.-+...+..++.+.. .+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y-~~fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRY-TQWEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHH-HHHHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHH-HHHHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcc
Confidence 42111111222211 11111101111222211110 112222222221 110
Q ss_pred ------------C--C------hhHHHHHHHHHHhCC--c------hHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc
Q 007288 278 ------------K--D------LITWNTIIAGYEKSG--S------SECLNMFSKMKSERFSPNCFTFTSIIAACATLAA 329 (609)
Q Consensus 278 ------------~--~------~~~~~~li~~~~~~~--~------~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 329 (609)
| + ...|...+.---..+ . ..+..+|++.+.. ++-+...|......+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 0 123444444333322 1 2234567776654 23356667777777778888
Q ss_pred HHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------cchH
Q 007288 330 LSCGQ-QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------------RD------------LVTW 383 (609)
Q Consensus 330 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~ 383 (609)
.+.|. .+++..... ++.+...+...+....+.|++++|..+|+.+.+ |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 999998875 355666777888888899999999999998763 31 2357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
...+....+.|+.+.|..+|.+..+. +. +....|...+..-.+ .++++.|..+|+...+. ++-+...+...++...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 77777778889999999999999886 21 122333332222223 35699999999999654 3446667778889888
Q ss_pred hcCCHHHHHHHHHhC-CCCC----CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 462 RAGRVKEAYELIKSM-PFKP----DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
..|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|++ .....+++-|.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f~~ry~ 585 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEFTNKYK 585 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHHHHHhc
Confidence 999999999999987 3333 34678888898999999999999999999999965 44555555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=121.33 Aligned_cols=223 Identities=9% Similarity=-0.024 Sum_probs=149.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cchHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVRR----GLDG-NLALANALIDMYAKCGNISDSQKIFSEMSD-----RD-----LVTWTS 385 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~ 385 (609)
...+...|+++.|...+....+. +-.+ ...++..+..+|...|+++.|...+++..+ ++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445667777777777666543 1111 234566677777777777777777666542 11 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhc----CC-CCChhHHHH
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGV-RPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDY----NV-NPNKEIYGC 455 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 455 (609)
+...|...|++++|++.+++..+... .++. .++..+...|...|++++|+..+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77888888888888888887765210 1111 36777888888888888888888887542 22 334566778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HhhHHHHHHHHHhCCC---hHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PF-----KPD-ESVWGPLLGACKEHRL---PNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
+...|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 888888888888888888776 11 121 2234556677788888 67777777766 3333445677889999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 007288 526 YAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~ 544 (609)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=121.57 Aligned_cols=230 Identities=15% Similarity=0.143 Sum_probs=138.8
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRR-------GLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------R-- 378 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 378 (609)
.++..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|...+++..+ +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555666666666666655542 2223344556666666666777666666665542 1
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc-----
Q 007288 379 --DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS------GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY----- 444 (609)
Q Consensus 379 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 444 (609)
...++..+...|...|++++|...++++.+. +-.|+ ...+..+...+...|++++|..+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2345666777777777888887777777653 22222 236777777888888888888888877443
Q ss_pred -C-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCCCHh-------hHHHHHHHHHhCCChHHHHHHH
Q 007288 445 -N-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP----------FKPDES-------VWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 445 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
+ .+....++..+...|...|++++|.+.++++- ..+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 12234567777888888888888888877661 111111 1222223345566677777788
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+......|....++..++.+|.+.|++++|.+++++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=129.54 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHH
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (609)
..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..+|.+.|++++|+..|++..+.+. -+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456788888888888888888888888874 454 56888888888899999999999998876552 25778888899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHH
Q 007288 459 LLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 536 (609)
+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++...+..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999988887 4455 46788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007288 537 KFRKIMRG 544 (609)
Q Consensus 537 ~~~~~m~~ 544 (609)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-11 Score=104.57 Aligned_cols=166 Identities=12% Similarity=0.083 Sum_probs=133.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA 424 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 424 (609)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..+....... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677788888888888888888887763 355678888888888999999999998888753 3345677777788
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...++++.|...+....+.. +.+...+..+...|.+.|++++|++.|++. ...| +...|..+..++.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 888899999999999886654 336778888899999999999999999887 3444 5677888889999999999999
Q ss_pred HHHHHHhccCCCC
Q 007288 503 LAALRVLDLKPNM 515 (609)
Q Consensus 503 ~~~~~~~~~~p~~ 515 (609)
..++++++++|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 9999999999854
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-11 Score=120.37 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=155.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCchhHHHHHHHHHHhC-----CCCChhHH
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNP----YSFSIAVRACASTGWVSFGKLIHAAVIKHG-----FGSNLPVM 252 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~ 252 (609)
+..+...+...|++++|+..|+++...+.. +. ..+..+...+...|++++|...++++.+.. .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 444555666777777777777777665222 22 345555566666666666666666655431 01123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhcc---
Q 007288 253 NSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLAA--- 329 (609)
Q Consensus 253 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~--- 329 (609)
..+...|...|++++|...|++.. +++.... .......++..+...+...|+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al-----------------------~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHL-----------------------TLARQLG--DRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-----------------------HHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-----------------------HHHHHhh--chHHHHHHHHHHHHHHHHcCcccc
Confidence 445555555555555555544321 1111110 001122345555566666666
Q ss_pred --------------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhc
Q 007288 330 --------------LSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR--DLVTWTSMMIGYGAH 393 (609)
Q Consensus 330 --------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~ 393 (609)
++.|...+.+..+. ......+ ...++..+...|...
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHc
Confidence 55555555543321 1111110 112455555666666
Q ss_pred CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-----CChhHHHHHHHHHhhc
Q 007288 394 GHGKEAIELFDEMVKSGV-RPD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-----PNKEIYGCVVDLLGRA 463 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 463 (609)
|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.... ....++..+...|...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 666666666666554210 011 126666777777778888777777766332111 1145667777888888
Q ss_pred CCHHHHHHHHHhC-------CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 464 GRVKEAYELIKSM-------PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 464 g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
|++++|.+.+++. +..+ ...++..+..++...|++++|...+++++++.+
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888887766 1111 134666777888899999999999999988776
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-11 Score=114.87 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KE 451 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 451 (609)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.... .+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344455555556666666666655543100 011 125566666667777777777777665321110 11 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PF---KPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
++..+...+...|++++|...+++. .. .++ ..++..+...+...|++++|...+++++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5666777777777777777777665 10 111 33566666778888888888888888877665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-10 Score=112.67 Aligned_cols=226 Identities=10% Similarity=0.044 Sum_probs=160.3
Q ss_pred HHHHhCC-chHHHHHHHHhHHC----CCCC-CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC------CCchhHHHHH
Q 007288 288 AGYEKSG-SSECLNMFSKMKSE----RFSP-NCFTFTSIIAACATLAALSCGQQVHAGIVRRGL------DGNLALANAL 355 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 355 (609)
..+...| +++|...|++.... +-.+ ...++..+...+...|+++.|...+.+..+.-. +....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555 66666666655442 1111 224566666777777777777777776654311 1123467778
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS----GVRP-DRIVFMAV 421 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l 421 (609)
..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|+..+++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 8888888998888888877662 11 137888899999999999999999998872 3323 34588889
Q ss_pred HHHHhccCCHHHHHHHHHHhhhc----CCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-hhHHHHHHHHH
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVVDLLGRAGR---VKEAYELIKSMPFKPDE-SVWGPLLGACK 493 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~ 493 (609)
...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.+..|+. ..+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987442 212223346678888999999 99999999998655543 45667778999
Q ss_pred hCCChHHHHHHHHHHhccCC
Q 007288 494 EHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p 513 (609)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-10 Score=101.22 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=100.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 334444444455555555554444321 1233445555555555555555555555554332 22445555566666666
Q ss_pred CCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 464 GRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 464 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
|++++|.+.++++ .. ..+...+..+..++...|++++|...++++++..|.+...+..++.+|...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666655 11 224556667777788888888888888888888888888888888888888888888888888
Q ss_pred HHhC
Q 007288 542 MRGM 545 (609)
Q Consensus 542 m~~~ 545 (609)
..+.
T Consensus 170 ~~~~ 173 (186)
T 3as5_A 170 ANEL 173 (186)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-08 Score=107.19 Aligned_cols=433 Identities=9% Similarity=-0.024 Sum_probs=275.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC---HHHHH
Q 007288 92 CHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCIS---MDNAR 168 (609)
Q Consensus 92 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~~A~ 168 (609)
...+.+..|++.+..+. -|..+|..++..+.+.+.++.+..+++.++..- +.....|...+..-.+.+ + ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~-~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKM-EELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC---CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhC-CcchHHHHH
Confidence 34555555666655443 488899999999988899999999999998874 346678888888888877 7 99999
Q ss_pred HHHccCCC-----CChhhHHHHHHHHHhcCCh----hh----HHHHHHHHHH-CCC-CCCH-hhHHHHHHHHHc------
Q 007288 169 LVFNDMKW-----KNDVSWTTLITGYAHSGNG----YG----GLGVFKEMLL-EGV-EMNP-YSFSIAVRACAS------ 226 (609)
Q Consensus 169 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----a~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------ 226 (609)
.+|++... +++..|...+....+.++. ++ ..++|+.... .|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987643 6777788777766665554 22 3466666544 365 5543 445544443322
Q ss_pred ---cCCchhHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHH
Q 007288 227 ---TGWVSFGKLIHAAVIKHGFGSN--LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNM 301 (609)
Q Consensus 227 ---~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~ 301 (609)
.++++.+..+|+.++. ++.. ..+|......-...+. ..+.+++.+. -.. ++.|...
T Consensus 204 ~eeq~~~~~~R~iy~raL~--iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------~~~-----y~~Ar~~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC--QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------SAQ-----YMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------HHH-----HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------hHH-----HHHHHHH
Confidence 2345566777777663 2221 1222221111100000 0011111110 000 2333344
Q ss_pred HHHhHH--CCC----C-----------C-----CH---HhHHHHHHHHHhhc-------cHHHHHHHHHHHHHhCCCCch
Q 007288 302 FSKMKS--ERF----S-----------P-----NC---FTFTSIIAACATLA-------ALSCGQQVHAGIVRRGLDGNL 349 (609)
Q Consensus 302 ~~~m~~--~~~----~-----------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~ 349 (609)
+.++.. .++ + | +. ..|...+.---..+ ..+.+..+|++.... ++.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 433221 111 0 1 00 12222222211111 134456678877765 35577
Q ss_pred hHHHHHHHHHHhcCCHHHHH-HHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC--
Q 007288 350 ALANALIDMYAKCGNISDSQ-KIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV---------RPD-- 414 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~-- 414 (609)
.+|...+..+...|+.++|. .+|++... | +...|-..+...-+.|++++|.++|+++.+... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 78888888888899999996 99988773 3 445677788888899999999999999986410 142
Q ss_pred ----------HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCC
Q 007288 415 ----------RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA-GRVKEAYELIKSM--PFKPD 481 (609)
Q Consensus 415 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~ 481 (609)
...|...+....+.|+.+.|..+|..+.+.-.......|-..+..-.+. ++.+.|..+|+.. ...-+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2367777888888899999999999996641122344444333333344 4589999999887 22235
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN---MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..+.+++.+.-+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566778888888899999999999999998773 456777888888889999999999999986544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-10 Score=113.93 Aligned_cols=222 Identities=9% Similarity=0.013 Sum_probs=153.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cchHHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRG--LD---GNLALANALIDMYAKCGNISDSQKIFSEMSD-----RD-----LVTWTSM 386 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 386 (609)
..+...|+++.|...+.++.+.. .. ....++..+..+|...|+++.|...+++..+ ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34456777777777777766431 11 1234666777788888888887777766542 11 3467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCCCChhHHHHHH
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKS----GVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNPNKEIYGCVV 457 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 457 (609)
..+|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 88888889999998888887652 1111 1236777888888999999999988888541 2223366778888
Q ss_pred HHHhhcCCHHHHHHHHHhC----CC--CCC-HhhHHHHHHHHHhCCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM----PF--KPD-ESVWGPLLGACKEHRL---PNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
..+.+.|++++|...+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 8999999999999888876 11 222 2234444466777777 77777777762 223334557778999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 007288 528 AEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~ 544 (609)
..|++++|...+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-09 Score=104.16 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cc-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--RD-LV-TWTSMMIGYGAHGHGKEAIELFDEM 406 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 406 (609)
++|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666521133444566666666666666666666666553 22 22 5666666666666677777777666
Q ss_pred HHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC-
Q 007288 407 VKSGVRPDRIVFMAVLTAC-SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-P---FKP- 480 (609)
Q Consensus 407 ~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p- 480 (609)
.+.+ +++...|....... ...|++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++. . ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 6542 12223333222221 12466677777776664432 224556666666666666666666666665 1 233
Q ss_pred -CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 481 -DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 481 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
....|..++....+.|+.+.|..+++++.+..|++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 24456666666666666666666666666666643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-10 Score=105.91 Aligned_cols=213 Identities=8% Similarity=0.008 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-CcchHHHHHHHHHh
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYA-------KCGNI-------SDSQKIFSEMSD---R-DLVTWTSMMIGYGA 392 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 392 (609)
+.|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666543 445566666666654 35775 899999998764 3 44689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh-hcCCHHHH
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDR-I-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG-RAGRVKEA 469 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 469 (609)
.|++++|..+|+++.+. .|+. . .|..+...+.+.|++++|..+|++..+.+. .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999984 5543 3 789999999999999999999999977542 34555554443322 36999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc---CC-CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 470 YELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL---KP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 470 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..+|++. ...| +...|..++..+.+.|++++|..+++++++. .| .....|..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 2223 5778889999999999999999999999985 45 356688899999999999999999999998
Q ss_pred hCCC
Q 007288 544 GMGS 547 (609)
Q Consensus 544 ~~~~ 547 (609)
+..+
T Consensus 269 ~~~p 272 (308)
T 2ond_A 269 TAFR 272 (308)
T ss_dssp HHTT
T ss_pred HHcc
Confidence 7544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-10 Score=103.75 Aligned_cols=190 Identities=14% Similarity=0.009 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVL 422 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 422 (609)
|+..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..+++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345555556666666666666666665542 34444555556666666666666666666653 3332 3555555
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNK-------EIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD---ESVWGPLLGA 491 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 491 (609)
..+...|++++|+..+++..+... .+. ..|..+...+...|++++|++.+++. ...|+ ...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 666666666666666666644331 122 33445555555556666666655554 33443 2333333344
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+.. .+...++++..+.+.+...|... .....+.+++|+..+++..+..+
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 432 23333444445444333333222 22334455999999999987443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=115.78 Aligned_cols=243 Identities=9% Similarity=0.036 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc
Q 007288 249 LPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPNCFTFTSIIAACATLA 328 (609)
Q Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 328 (609)
..++..+...+...|++++|...|+++.+ ++..............+..+...+...|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g 83 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-----------------------DLEKTSGHDHPDVATMLNILALVYRDQN 83 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HHHHHHCSSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------HHHHHcCCCCHHHHHHHHHHHHHHHHCC
Confidence 44556666666666666666666655432 1111110011122334555555666666
Q ss_pred cHHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CcchHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRR------G-LDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------R----DLVTWTSMMIGY 390 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~ 390 (609)
++++|...+..+.+. + .+....++..+...|...|++++|...|+++.+ + ....+..+...+
T Consensus 84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 666666666655543 1 122345566677777777777777777766542 1 224567777888
Q ss_pred HhcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc-------CCCCC-------
Q 007288 391 GAHGHGKEAIELFDEMVKS------GVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDY-------NVNPN------- 449 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~------- 449 (609)
...|++++|++.++++.+. +-.|+. .++..+...+...|++++|...++++.+. ...+.
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 8888888888888888763 223332 36777888888999999999988888542 11111
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSMP-FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
...+..+...+...+.+.+|...++... ..| +..++..+..+|.+.|++++|...+++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333444455555566666652 233 4567778889999999999999999999988773
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-10 Score=100.61 Aligned_cols=204 Identities=10% Similarity=0.058 Sum_probs=159.6
Q ss_pred CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHH
Q 007288 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMI 388 (609)
Q Consensus 312 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 388 (609)
.|+..+......+...|++++|...|....+...+++...+..+..++.+.|++++|...|+...+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999987547777777799999999999999999998874 3 4567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC---hhHHHHHH
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPD-R-------IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN---KEIYGCVV 457 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 457 (609)
+|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|++..+.+ |+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 999999999999999999985 343 3 457788888999999999999999997643 44 56777788
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 458 DLLGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
.+|...|+. .++++ . ...+...+.... ....+.+++|+..+++++++.|++..+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766543 22222 1 112334444333 34456789999999999999998887777766554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-08 Score=100.79 Aligned_cols=255 Identities=8% Similarity=-0.042 Sum_probs=165.4
Q ss_pred HHhCC-chHHHHHHHHhHHCCCCCCHH----hHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHH
Q 007288 290 YEKSG-SSECLNMFSKMKSERFSPNCF----TFTSIIAACATLAALSCGQQVHAGIVRRGLD-GN----LALANALIDMY 359 (609)
Q Consensus 290 ~~~~~-~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~ 359 (609)
+...| .++|...+++........+.. .+..+...+...|+++.|...+.+....... .+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 33444 555555555554432111221 3444455566677777777777766542110 11 22345667777
Q ss_pred HhcCCHHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHH
Q 007288 360 AKCGNISDSQKIFSEMSD-------R----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR--P--DRIVFMAVLTA 424 (609)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~~ 424 (609)
...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 888888888888776652 1 1234566777888889999999999888763211 1 23467778888
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCh-hHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNK-EIYG-----CVVDLLGRAGRVKEAYELIKSM-PFKPD-----ESVWGPLLGAC 492 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~ 492 (609)
+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++. ...|. ...+..+..++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 88999999999999888443211111 1121 2334477899999999999887 22221 22455666888
Q ss_pred HhCCChHHHHHHHHHHhccCCC-----C-cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 493 KEHRLPNLGKLAALRVLDLKPN-----M-MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...|++++|...++++....+. + ...+..++.++...|++++|...+++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8999999999999988765331 1 23667788999999999999999988865
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-09 Score=95.07 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4556677888899999999999999875 356678888899999999999999999998853 346678888899999
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHH
Q 007288 427 HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLA 504 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 504 (609)
..|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999996654 346788888999999999999999999887 2233 567888888999999999999999
Q ss_pred HHHHhccCCCCcc
Q 007288 505 ALRVLDLKPNMMG 517 (609)
Q Consensus 505 ~~~~~~~~p~~~~ 517 (609)
++++++..|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 9999998886554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-10 Score=115.16 Aligned_cols=180 Identities=12% Similarity=-0.003 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 365 ISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHG-KEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 365 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++++...++.... .+...+..+..++...|++ ++|++.|++..+.. +-+...+..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3567888899999999999 99999999999853 23467999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC--------CChHHH
Q 007288 441 MNDYNVNPNKEIYGCVVDLLGRA---------GRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH--------RLPNLG 501 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~~a 501 (609)
..+.. |+...+..+...|... |++++|++.+++. ...| +...|..+..++... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 97754 6678899999999999 9999999999987 3444 577888888999888 999999
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 502 KLAALRVLDLKP---NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 502 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+..++++++++| .++..|..++.+|...|++++|.+.|++..+..+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999 9999999999999999999999999999987544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-08 Score=100.29 Aligned_cols=222 Identities=8% Similarity=0.030 Sum_probs=158.1
Q ss_pred HHHhCC-chHHHHHHHHhHHCCC-CCC----HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCC-----C-CchhHHHHHH
Q 007288 289 GYEKSG-SSECLNMFSKMKSERF-SPN----CFTFTSIIAACATLAALSCGQQVHAGIVRRGL-----D-GNLALANALI 356 (609)
Q Consensus 289 ~~~~~~-~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~ 356 (609)
.+...| +++|+..|++...... .++ ..++..+...+...|+++.|...+.+..+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344555 6666666666554210 122 33566667777778888888887777654211 1 1245667788
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 007288 357 DMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVK-----SGVRPDRIVFMAVL 422 (609)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 422 (609)
.+|...|++++|...|++..+ ++ ..+++.+..+|...|++++|++.+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 888888888888888877653 12 24677888899999999999999999886 32 22356888899
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCC----CCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-hhHHHHHHHHHh
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNV----NPNKEIYGCVVDLLGRAGR---VKEAYELIKSMPFKPDE-SVWGPLLGACKE 494 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~ 494 (609)
..+.+.|++++|...+++..+... +.....+..+...+...|+ +.+|+..+++.+..|+. ..+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999854321 2223456667777778888 89999999987654443 355567788999
Q ss_pred CCChHHHHHHHHHHhcc
Q 007288 495 HRLPNLGKLAALRVLDL 511 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~ 511 (609)
.|++++|...++++++.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-10 Score=105.27 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMSD-------R----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS------GV 411 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 411 (609)
..++..+...|...|++++|...|+++.+ + ...++..+...|...|++++|...+++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555555555555555554431 1 1235566666666777777777777666543 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc------C-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 007288 412 RPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY------N-VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM------- 476 (609)
Q Consensus 412 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 476 (609)
.|+ ..++..+...+...|++++|..+++++.+. + .+....++..+...|...|++++|.+.++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122 346677777777778888888777777443 1 1123456677777788888888887777665
Q ss_pred ---CCCCCH-hhHHHHHHHHHhCCC------hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 477 ---PFKPDE-SVWGPLLGACKEHRL------PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 477 ---~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...+.. ..|..+.......+. +..+...++......|....++..++.+|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 233333333333222 22333333333334455567888899999999999999999988765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.6e-10 Score=104.64 Aligned_cols=201 Identities=8% Similarity=0.038 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--CcchHHHHHHHHHhcCCHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-------R--DLVTWTSMMIGYGAHGHGKEA 399 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 399 (609)
+++.|...+... ...|...|++++|...|++..+ + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467776666655 3456677888888777776542 1 135788888888899999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHhcc-CCHHHHHHHHHHhhhcCCCC-C----hhHHHHHHHHHhhcCCHHH
Q 007288 400 IELFDEMVKS----GVRP-DRIVFMAVLTACSHA-GLVDEGLKYFKSMNDYNVNP-N----KEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 400 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 468 (609)
+..+++..+. |-.. -..++..+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887752 2111 134788888899996 99999999999985432111 1 3568889999999999999
Q ss_pred HHHHHHhC-CCCCCHh--------hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hcCCh
Q 007288 469 AYELIKSM-PFKPDES--------VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT-----YIILSNIYA--AEGKW 532 (609)
Q Consensus 469 A~~~~~~~-~~~p~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 532 (609)
|+..|++. ...|+.. .|..+..++...|++++|...++++++++|..... +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 2233211 46677788999999999999999999999965442 444666665 45778
Q ss_pred HHHHHHHHHHHh
Q 007288 533 EEFAKFRKIMRG 544 (609)
Q Consensus 533 ~~A~~~~~~m~~ 544 (609)
++|+..|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888866544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-08 Score=95.12 Aligned_cols=157 Identities=10% Similarity=-0.091 Sum_probs=78.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCCchhHHHHHHHHHHhCCC-CC----hhHHHHHH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMNPY----SFSIAVRACASTGWVSFGKLIHAAVIKHGFG-SN----LPVMNSIL 256 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~ 256 (609)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+..-. .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777777766543222221 3444445566677777777777666553211 11 12245556
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCC--C--CHHhHHHH
Q 007288 257 DMYCRFDCLSDANQYFDEMTE-------K----DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFS--P--NCFTFTSI 320 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~--p--~~~t~~~l 320 (609)
..+...|++++|...+++..+ + ....+..+...+...| +++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 666667777776666655421 0 0112333344444444 55555555444332110 1 12234444
Q ss_pred HHHHHhhccHHHHHHHHHHHHH
Q 007288 321 IAACATLAALSCGQQVHAGIVR 342 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~ 342 (609)
...+...|++++|...++....
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-09 Score=100.08 Aligned_cols=198 Identities=8% Similarity=-0.055 Sum_probs=129.2
Q ss_pred HHHhhccHHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHH
Q 007288 323 ACATLAALSCGQQVHAGIVRR----GLDGN-LALANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMI 388 (609)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~ 388 (609)
.+...|++++|...|.+..+. |-+++ ..+++.+..+|.+.|++++|...|++..+ .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544432 21111 34556666666666777766666665542 11 246777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh------hHHHHH
Q 007288 389 GYGAH-GHGKEAIELFDEMVKSGVR-PD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK------EIYGCV 456 (609)
Q Consensus 389 ~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 456 (609)
.|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999988763110 01 346888889999999999999999998765433222 156778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHh------hHHHHHHHHH--hCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 457 VDLLGRAGRVKEAYELIKSM-PFKPDES------VWGPLLGACK--EHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
..++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++..++|.....+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 88899999999999999887 4455422 2344555554 456788999999888888885443333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=95.24 Aligned_cols=205 Identities=8% Similarity=0.002 Sum_probs=125.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD--RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD-RIVFM 419 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 419 (609)
+...+-.+...+.+.|++++|...|+.+.+ |+ ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344455556666666666666666666653 22 33455566666666666666666666665311 112 23455
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007288 420 AVLTACSH--------AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGA 491 (609)
Q Consensus 420 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 491 (609)
.+..++.. .|++++|+..|+++.+.... +......+.......++. ...+..+...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 55555555 66666666666666443311 112221111111000000 0113556788
Q ss_pred HHhCCChHHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCcccCceeEEEe
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSNIYAAE----------GKWEEFAKFRKIMRGMGSKKEVGMSWIEV 558 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 558 (609)
+.+.|++++|+..++++++..|++ ...+..++.+|... |++++|...++++.+..+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence 999999999999999999999974 44788899999877 999999999999987433
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 007288 559 RDKVCGFIANDKMGSHTQYVYGVLEMLIRHMNE 591 (609)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 591 (609)
.++.+.++...+..+...+.+
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 345566666667777666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=115.22 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD-RIVFMAVLT 423 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 423 (609)
+...++.|..+|.+.|++++|+..|++..+ | +..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 355667777777777888888777777653 3 4567788888888888888888888888874 444 557888888
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH
Q 007288 424 ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG 501 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 501 (609)
++...|++++|++.|++..+.+. -+...|..+..+|...|++++|++.|++. .+.| +...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888888888888888866542 25677888888888888888888888876 4455 456777888888888888888
Q ss_pred HHHHHHHhccCC
Q 007288 502 KLAALRVLDLKP 513 (609)
Q Consensus 502 ~~~~~~~~~~~p 513 (609)
.+.+++++++.|
T Consensus 165 ~~~~~kal~l~~ 176 (723)
T 4gyw_A 165 DERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 888888776543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-08 Score=90.93 Aligned_cols=180 Identities=12% Similarity=0.021 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD--RDL----VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR----IVFM 419 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~ 419 (609)
..+..+...+.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777777777777777653 321 35566667777777777777777777763 2222 1333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007288 420 AVLTACSH------------------AGLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLGRAGRVKEAYELIKSMPFKP 480 (609)
Q Consensus 420 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 480 (609)
.+..++.. .|++++|+..|+++.+.. |+ ...+...... +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----HHHHHHH----------
Confidence 33333332 234445555554443322 11 1111111000 0000000
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM---GTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
......+...+.+.|++++|+..++++++..|+++ ..+..++.+|.+.|++++|...++.+...++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345678899999999999999999999765 56889999999999999999999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=84.07 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=76.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCC
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHR 496 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 496 (609)
..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444555555555555543322 123444444555555555555555555544 11 123445566666677777
Q ss_pred ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 497 LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
++++|...++++.+..|.+...+..++.+|...|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777888888888888888887777653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=92.66 Aligned_cols=142 Identities=12% Similarity=0.036 Sum_probs=103.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 387 MIGYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
...+...|++++|+..++..... .|+. ..+..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34445567777777777776542 3333 255567777888888888888888886654 2367778888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 466 VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKL-AALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
+++|+..|++. .+.| +...|..+...+.+.|++++|.. .++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 4455 45677788888888888876555 4688999999999999988888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=5.7e-08 Score=90.56 Aligned_cols=174 Identities=7% Similarity=-0.023 Sum_probs=96.2
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007288 368 SQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMND 443 (609)
Q Consensus 368 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
|...|+++.+ ++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444432 233344455556666666666666666665543212 334555666666666666666666666644
Q ss_pred cCCCC-----ChhHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhcc--
Q 007288 444 YNVNP-----NKEIYGCVVDL--LGRAG--RVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDL-- 511 (609)
Q Consensus 444 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 511 (609)
. .| +..+...|..+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3 23 23333334433 22223 666666666666 22344333344444666677777777777666554
Q ss_pred --------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 512 --------KPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 512 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 666777777664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-09 Score=97.74 Aligned_cols=215 Identities=10% Similarity=0.052 Sum_probs=139.3
Q ss_pred HHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHH
Q 007288 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRR------GL-DGNLALANALIDMYAKCGNISDSQK 370 (609)
Q Consensus 298 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (609)
|++++.+......+....++..+...+...|+++.|...+..+.+. +- +....++..+..+|...|++++|..
T Consensus 27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 106 (283)
T 3edt_B 27 ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 106 (283)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444433222223456677777778888888888888777654 22 2335567778888888888888888
Q ss_pred HHHhcCC-------C----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHH
Q 007288 371 IFSEMSD-------R----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKS------GVRPD-RIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 371 ~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~ 432 (609)
.|++..+ + ...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|+++
T Consensus 107 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 107 LCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 8877652 1 2356778888899999999999999988764 11332 347888889999999999
Q ss_pred HHHHHHHHhhhc-------CCCC-ChhHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHhCC
Q 007288 433 EGLKYFKSMNDY-------NVNP-NKEIYGCVVDLLGRA------GRVKEAYELIKSMP-FKP-DESVWGPLLGACKEHR 496 (609)
Q Consensus 433 ~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 496 (609)
+|..++++..+. ...+ ....+..+...+... ..+.++...++..+ ..| ...++..+..++...|
T Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999988543 1122 233343333333332 23445555555553 223 3456777889999999
Q ss_pred ChHHHHHHHHHHhccC
Q 007288 497 LPNLGKLAALRVLDLK 512 (609)
Q Consensus 497 ~~~~a~~~~~~~~~~~ 512 (609)
++++|...++++++..
T Consensus 267 ~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 267 KLEAAHTLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.6e-09 Score=111.67 Aligned_cols=146 Identities=11% Similarity=-0.106 Sum_probs=69.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
..+..+..++...|++++|+..|+++.+.. .-+...+..+..++...|++++|+..|++..+... -+...+..+..+|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 344444455555555555555555554421 11333444444555555555555555555544331 1344444555555
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 461 GRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|+..++++++++|++...+..++.+|...
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence 55555555 5555444 2222 2334444445555555555555555555555555555555555554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-08 Score=79.94 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46667777888888888888888887753 3356677777888888888888888888886654 335667778888888
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 462 RAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
..|++++|.+.++++ ...| +...+..+...+...|++++|...++++++..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888876 2223 5667777888888999999999999998888774
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=93.74 Aligned_cols=202 Identities=10% Similarity=-0.017 Sum_probs=140.8
Q ss_pred CCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cchH
Q 007288 312 PNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG--NLALANALIDMYAKCGNISDSQKIFSEMSD--RD----LVTW 383 (609)
Q Consensus 312 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~ 383 (609)
.+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+.+.+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 355677778888899999999999999998865221 156778899999999999999999999874 32 2456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHH
Q 007288 384 TSMMIGYGA--------HGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYG 454 (609)
Q Consensus 384 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 454 (609)
..+..++.. .|++++|+..|+++.+. .|+.. ....+ ..+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 777888888 99999999999999985 34332 22111 111111000 011245
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhC----------CChHHHHHHHHHHhccCCCCcc--
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEH----------RLPNLGKLAALRVLDLKPNMMG-- 517 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~-- 517 (609)
.+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5777888888888888888877 22333 33555666667655 8899999999999999997753
Q ss_pred -hHHHHHHHHHhcCChH
Q 007288 518 -TYIILSNIYAAEGKWE 533 (609)
Q Consensus 518 -~~~~l~~~~~~~g~~~ 533 (609)
....+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3344555554444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=85.35 Aligned_cols=171 Identities=8% Similarity=-0.093 Sum_probs=133.8
Q ss_pred HHHHHhcC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhhh
Q 007288 369 QKIFSEMS-DRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG----LVDEGLKYFKSMND 443 (609)
Q Consensus 369 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~ 443 (609)
.+.|+... ..+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|++..+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444333 2356677777777888888888888888888865 55677777777777 6 89999999998876
Q ss_pred cCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHh----CCChHHHHHHHHHHhcc
Q 007288 444 YNVNPNKEIYGCVVDLLGR----AGRVKEAYELIKSM-PFKPD---ESVWGPLLGACKE----HRLPNLGKLAALRVLDL 511 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 511 (609)
.| +...+..|...|.. .+++++|++.|++. ...|+ ...+..|...|.. .+++++|...++++.+.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 55 56677778888877 78999999999887 33342 6788888888888 88999999999999988
Q ss_pred CCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 007288 512 KPNMMGTYIILSNIYAAE-G-----KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 512 ~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 547 (609)
|+++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 159 -~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 159 -SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp -SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55778899999999865 3 89999999999988765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-08 Score=92.61 Aligned_cols=174 Identities=9% Similarity=0.005 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 366 SDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 366 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444455544444556677778888999999999999999885 44 5568888889999999999999999988654
Q ss_pred CCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC--cchH
Q 007288 445 NVNPNKEIYG-CVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM--MGTY 519 (609)
Q Consensus 445 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 519 (609)
. |+..... .....+...++.++|++.+++. ...| +...+..+..++...|++++|...++++++.+|++ ...+
T Consensus 181 ~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 D--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp G--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred h--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3 4443332 2333466777888888888776 3345 56778888899999999999999999999999977 7889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..++.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-08 Score=86.66 Aligned_cols=156 Identities=8% Similarity=0.001 Sum_probs=96.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHH-Hhh
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL-LGR 462 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 462 (609)
.+...+...|++++|...|++..+. .| +...+..+...+...|++++|+..++...+.. |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3444555556666666666555442 22 33455555566666666666666666654322 122222221111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCChHHHHHH
Q 007288 463 AGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM--MGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
.+...+|+..+++. ...| +...+..+..++...|++++|...++++++.+|+. ...+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12222355555554 3345 46777788888899999999999999999998854 55888999999999999999998
Q ss_pred HHHHHh
Q 007288 539 RKIMRG 544 (609)
Q Consensus 539 ~~~m~~ 544 (609)
|++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-07 Score=85.45 Aligned_cols=239 Identities=8% Similarity=-0.014 Sum_probs=156.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHH
Q 007288 259 YCRFDCLSDANQYFDEMTEKDL-ITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQV 336 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 336 (609)
..-.|.+..++.-...+...+. ..-..+.++|...| .... ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3445777777665555543222 22223446666666 4321 01223332333332222 222 5666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 337 HAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-----DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
+++....+ .++...+..+..++...|++++|++++...... +...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66666554 445555568888899999999999999987433 445677788999999999999999999987 4
Q ss_pred CC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 007288 412 RP-----DRIVFMAVLTAC--SHAG--LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF--- 478 (609)
Q Consensus 412 ~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 478 (609)
.| +..+...|..++ ...| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 66 356666676663 3334 899999999998553 344333344555889999999999999765 21
Q ss_pred -------CC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 479 -------KP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 479 -------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.| +..+...++......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 44555466666666776 8899999999999976543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.2e-08 Score=91.58 Aligned_cols=193 Identities=10% Similarity=0.054 Sum_probs=138.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHH
Q 007288 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGK 397 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~ 397 (609)
.++++.|...|..+ ...|...|++++|...|....+ .+ ..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666655543 4567788898888888877652 11 347888888999999999
Q ss_pred HHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC-----ChhHHHHHHHHHhhcCCHH
Q 007288 398 EAIELFDEMVKSG---VRPD--RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP-----NKEIYGCVVDLLGRAGRVK 467 (609)
Q Consensus 398 ~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 467 (609)
+|+..|++..+.- -.+. ..++..+...|.. |++++|+..|++..+..... ...++..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876521 1122 2477888888888 99999999999885432111 1467888999999999999
Q ss_pred HHHHHHHhC-CC---CCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch-----HHHHHHHHHhcCChHH
Q 007288 468 EAYELIKSM-PF---KPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT-----YIILSNIYAAEGKWEE 534 (609)
Q Consensus 468 ~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~ 534 (609)
+|++.|++. .+ .++ ...+..+..++...|++++|...+++++ +.|..... ...++.++ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999999887 11 112 2255666677888899999999999999 98854432 34455555 5677766
Q ss_pred HHH
Q 007288 535 FAK 537 (609)
Q Consensus 535 A~~ 537 (609)
+..
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-08 Score=101.93 Aligned_cols=160 Identities=11% Similarity=0.026 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007288 362 CGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 356788899999999999999999999999853 335678899999999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC---CChHHHHHHHHHHhccCC
Q 007288 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH---RLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p 513 (609)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|...++++++.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9997755 336788999999999999999999999987 3344 567788888999999 999999999999999999
Q ss_pred CCcchHHHHH
Q 007288 514 NMMGTYIILS 523 (609)
Q Consensus 514 ~~~~~~~~l~ 523 (609)
.+...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8888887776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=85.09 Aligned_cols=128 Identities=10% Similarity=0.030 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc
Q 007288 384 TSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA 463 (609)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (609)
+.+..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|+..|++..+... .+...+..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 347888999999999999999999852 23567888899999999999999999999977652 3677888888887666
Q ss_pred CC--HHHHHHHHHhCCCCCCH--hhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 464 GR--VKEAYELIKSMPFKPDE--SVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 464 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
|+ .+.+...++... .|+. ..+..+..++...|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 54 445566666653 3443 34444556677789999999999999999995
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-09 Score=87.59 Aligned_cols=124 Identities=10% Similarity=-0.023 Sum_probs=101.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP 498 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 498 (609)
|...+...|++++|+..++...... +-+...+-.+...|.+.|++++|++.|++. ...| +...|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4455667889999999999885432 113445567889999999999999999988 4555 577888899999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF-RKIMRGM 545 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 545 (609)
++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5777763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-08 Score=83.10 Aligned_cols=98 Identities=7% Similarity=-0.126 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++++|+++..|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3556777888888999999999999887 4445 5778888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~ 546 (609)
...|++++|+..|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.5e-07 Score=85.51 Aligned_cols=159 Identities=10% Similarity=-0.043 Sum_probs=118.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CC----hhHHHH
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSG-VRPDRI----VFMAVLTACSHAGLVDEGLKYFKSMNDYNVN-PN----KEIYGC 455 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 455 (609)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|+..++.+.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4567788899999999999888742 122221 3334666677788999999999998663322 22 236888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-----C--C-CCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-----P--F-KPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYI 520 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-----~--~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 520 (609)
+...|...|++++|+..++++ . . .+. ..++..+..+|.+.|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999998888776 1 1 111 2367778888999999999999999998864422 56889
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 007288 521 ILSNIYAAEGK-WEEFAKFRKIMRG 544 (609)
Q Consensus 521 ~l~~~~~~~g~-~~~A~~~~~~m~~ 544 (609)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988864
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-07 Score=95.79 Aligned_cols=147 Identities=10% Similarity=-0.019 Sum_probs=94.1
Q ss_pred hccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHH
Q 007288 327 LAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELF 403 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (609)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777888887776553 33466777777888888888888888877764 24567777777888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 007288 404 DEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA---GRVKEAYELIKSM 476 (609)
Q Consensus 404 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 476 (609)
++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8877742 23456777777888888888888888888765442 3566777777777777 8888888877776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-07 Score=96.56 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=146.6
Q ss_pred HhhccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhc
Q 007288 325 ATLAALSCGQQVHAGIV--------RRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAH 393 (609)
Q Consensus 325 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 393 (609)
...|++++|...++... +. .+.+...+..+..+|...|++++|...|+.+.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 32 245567788889999999999999999998874 3667889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYEL 472 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (609)
|++++|+..|++..+. .| +...+..+..++.+.|++++ ++.|++..+.+. .+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999985 44 45688889999999999999 999999977653 3677888999999999999999999
Q ss_pred HHhC-CCCCC-HhhHHHHHHHHHhCCC-----hHHHHHHHHHHhccCCCCcc
Q 007288 473 IKSM-PFKPD-ESVWGPLLGACKEHRL-----PNLGKLAALRVLDLKPNMMG 517 (609)
Q Consensus 473 ~~~~-~~~p~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~ 517 (609)
|++. ...|+ ...+..+..++...++ .+...+..+....+.+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 56776 4566666677766555 23344444444455554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-06 Score=80.22 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=121.1
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhcCC---CCcchHHHHHHHH----Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007288 352 ANALIDMYAKCG--NISDSQKIFSEMSD---RDLVTWTSMMIGY----GAH---GHGKEAIELFDEMVKSGVRPDRIVFM 419 (609)
Q Consensus 352 ~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 419 (609)
++.--.++...| ++++++.+++.+.. .+..+|+.-...+ ... +++++++++++++.+.. +-|..+|.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333334444444 56666666655542 2334454443333 333 56777777777777642 23555666
Q ss_pred HHHHHHhccCCHH--HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHhhHHHHH
Q 007288 420 AVLTACSHAGLVD--EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR------VKEAYELIKSM-PFKP-DESVWGPLL 489 (609)
Q Consensus 420 ~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~ 489 (609)
.-...+.+.|.++ +++++++++.+.++. |...|+.-...+.+.|+ ++++++.++++ ...| |...|+.+.
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 6666666666666 777777777665543 56666666666666665 77777777665 3333 667777777
Q ss_pred HHHHhCCChH-HHHHHHHHHhccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 490 GACKEHRLPN-LGKLAALRVLDLK---PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 490 ~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..+.+.|+.. .....++++.+++ |.++..+..++.+|.+.|+.++|+++++.+.+
T Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 228 GIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777777643 3555666666655 66777888888888888888888888888875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-07 Score=82.44 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=57.9
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNL 500 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 500 (609)
..+...|++++|+..|++.. .|+...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 33444444444444444431 233444444444444444444444444443 1112 23344444455555555555
Q ss_pred HHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 501 GKLAALRVLDLKPNMM----------------GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 501 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
|...++++++..|.+. ..+..++.+|...|++++|...+++..+.
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555444443 55555566666666666666665555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-08 Score=81.90 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677888888999999999999887 3344 6677888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~ 546 (609)
...|++++|...|++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999987743
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=76.38 Aligned_cols=108 Identities=9% Similarity=-0.045 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555556666666666666666665443 224555666666666666666666666555 2223 34556666666666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.|++++|+..++++++++|++...+..|..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6666666666666666666666655555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-07 Score=85.55 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=120.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCC---CCC--hh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR-----IVFMAVLTACSHAGLVDEGLKYFKSMNDYNV---NPN--KE 451 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 451 (609)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566778889999999998888775322111 1234455667788899999999988754321 111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC------Cc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM----PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN------MM 516 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 516 (609)
+++.+...|...|++++|+..+++. ...|+ ..++..+..+|...|++++|...+++++++.+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999988776 11222 257778888999999999999999999876431 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 007288 517 GTYIILSNIYAAEGKWEEF-AKFRKIMRG 544 (609)
Q Consensus 517 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 544 (609)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=79.24 Aligned_cols=156 Identities=14% Similarity=0.003 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 007288 352 ANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTA-CSH 427 (609)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 427 (609)
+..+...+.+.|++++|...|+...+ .+...+..+...+...|++++|+..+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667777888888888877774 34566777777788888888888888777653 3333322222111 112
Q ss_pred cCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHhCCChHHHHH
Q 007288 428 AGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD---ESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
.+...+|+..+++..+.. +-+...+..+...+...|++++|+..|+++ ...|+ ...+..+..++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334677777776544 225677777888888888888888888776 44554 4467777788888888888888
Q ss_pred HHHHHhc
Q 007288 504 AALRVLD 510 (609)
Q Consensus 504 ~~~~~~~ 510 (609)
.+++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-07 Score=87.04 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH-H
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL-G 490 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~ 490 (609)
.+...+..+...+...|++++|...|+++.+... -+...+..+...+.+.|++++|...++++ ...|+........ .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 3445777788889999999999999999977553 36778889999999999999999999998 4567655443333 3
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+...++.+.|...++++++.+|++...+..++.+|...|++++|...++++.+..+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 367788889999999999999999999999999999999999999999999988654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-06 Score=78.16 Aligned_cols=131 Identities=10% Similarity=0.006 Sum_probs=91.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGL 430 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~ 430 (609)
+..+|.+.|++++|...|+...+ | +...|..+..++...|++++|+..|++..+. .| +..++..+...+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 78888889999999999988763 3 5678888888999999999999999998884 44 45677777777765543
Q ss_pred --HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHH
Q 007288 431 --VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLL 489 (609)
Q Consensus 431 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 489 (609)
.+.+...++.... ..|....+..+..++...|++++|+..|++. ...|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444555554432 2233333444566667788999999999887 6778766554444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=75.41 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+......|.+.|++++|++.|++. ...| +...|..+..++.+.|++++|+..++++++++|++...|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456777889999999999999999987 4445 57788888999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|++.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998743
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-05 Score=77.97 Aligned_cols=201 Identities=11% Similarity=-0.034 Sum_probs=114.0
Q ss_pred HHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcC
Q 007288 298 CLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDS-QKIFSEMS 376 (609)
Q Consensus 298 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 376 (609)
+..+|+++... .+-+...|...+..+...|+.+.|..++++.... +.+...+.. |....+.++. ..+.+...
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHH
Confidence 45677776653 2334556666666677778888888888888877 333322221 2221111111 11121110
Q ss_pred --C-------C---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhh
Q 007288 377 --D-------R---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH-AGLVDEGLKYFKSMND 443 (609)
Q Consensus 377 --~-------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 443 (609)
. + ....|...+....+.++.+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 0 1134555555555667788888888877 321 2233344322211111 2357888888887754
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 444 YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
.- +-+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 2234455666777777788888888888873 2456677777776777777777777776653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.62 E-value=9.7e-07 Score=80.06 Aligned_cols=184 Identities=11% Similarity=0.017 Sum_probs=129.2
Q ss_pred CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcc----hHH
Q 007288 313 NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDG--NLALANALIDMYAKCGNISDSQKIFSEMSD--RDLV----TWT 384 (609)
Q Consensus 313 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 384 (609)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+.+.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666778889999999999999999864322 235677889999999999999999999873 4322 455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhcC
Q 007288 385 SMMIGYGA------------------HGHGKEAIELFDEMVKSGVRPDRI-VFMAVLTACSHAGLVDEGLKYFKSMNDYN 445 (609)
Q Consensus 385 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
.+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999984 45443 2211110 000111110
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 446 VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|+.++|...++.+....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 11234667888999999999999887 333442 4577778899999999999999999988888654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-06 Score=77.49 Aligned_cols=144 Identities=11% Similarity=-0.050 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 432 (609)
..+...+...|++++|...|++...++...|..+..+|...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566677777777777777766666677777777777777777777777766642 234456666666666777777
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
+|+..|+...+......... +...| +...| ....+..+..++...|++++|...+++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID-------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE-------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHHH-------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777766654321111000 00000 01222 2356667778888888888888888888888
Q ss_pred CCCC
Q 007288 512 KPNM 515 (609)
Q Consensus 512 ~p~~ 515 (609)
.|.+
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 8854
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=6.6e-07 Score=76.46 Aligned_cols=127 Identities=10% Similarity=-0.028 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|++.+++. ...| +...|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45556666777778888888777775543 235667777778888888888888888776 2233 46677888888999
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCChHHHHHHHHHHHh
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSN--IYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~ 544 (609)
.|++++|...++++++..|.+...+..+.. .+...|++++|+..+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988877755444 48888999999999887754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=90.03 Aligned_cols=195 Identities=7% Similarity=-0.003 Sum_probs=148.3
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK-CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
..|++++|..++++..+.... . +.+ .++++.|...|... ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 357788888888887764221 1 122 58889998887653 567889999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 007288 405 EMVKS----GVRPD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY----NVNP-NKEIYGCVVDLLGRAGRVKEAYELIK 474 (609)
Q Consensus 405 ~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
+..+. |-.+. ..+|..+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 88762 21111 247888899999999999999999987432 2111 14577888899988 99999999998
Q ss_pred hC-CCCC---C----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCChHHHHHHHH
Q 007288 475 SM-PFKP---D----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM------GTYIILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 475 ~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 540 (609)
+. .+.| + ..++..+...+.+.|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 1111 1 45677888999999999999999999999766432 366778888999999999999999
Q ss_pred HHH
Q 007288 541 IMR 543 (609)
Q Consensus 541 ~m~ 543 (609)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 998
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-07 Score=75.16 Aligned_cols=97 Identities=10% Similarity=-0.084 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445666777888899999999988887 3344 5677888888899999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 007288 527 AAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~ 545 (609)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998774
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=88.85 Aligned_cols=192 Identities=7% Similarity=-0.047 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 349 LALANALIDMYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
...+..+...+.+.|++++|...|+... .| +...|..+..+|...|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445566667777777777777777665 23 55677777888888888888888888877642 23456777788888
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
...|++++|...|++..+.+.. +...+...+....+..+...... .......++......+ ..+. .|++++|.+.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~~~~ 158 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERELEEC 158 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHHHHH
Confidence 8888888888888887543211 11011111111111111111111 2222223333333333 3332 68899999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAAE-GKWEEFAKFRKIMRGM 545 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 545 (609)
+++++.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998777777787777776 7789999999988763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=6.4e-06 Score=78.03 Aligned_cols=157 Identities=8% Similarity=-0.042 Sum_probs=116.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC---c------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSDRD---L------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVR-PD----RIVFMA 420 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 420 (609)
.+..+...|++++|...++...+.. . ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788899999999998876421 1 12334666677778999999999999884222 22 236888
Q ss_pred HHHHHhccCCHHHHHHHHHHhhh----c-CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HhhHH
Q 007288 421 VLTACSHAGLVDEGLKYFKSMND----Y-NVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-------PFKPD-ESVWG 486 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 486 (609)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998853 1 1122 2347788999999999999999988876 22222 56778
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHhcc
Q 007288 487 PLLGACKEHRL-PNLGKLAALRVLDL 511 (609)
Q Consensus 487 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 511 (609)
.+..++.+.|+ +++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88889999995 69999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.4e-06 Score=75.57 Aligned_cols=162 Identities=8% Similarity=-0.098 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007288 348 NLALANALIDMYAKCGNISDSQKIFSEMSD-RDLVTWTSMMIGYGAHG----HGKEAIELFDEMVKSGVRPDRIVFMAVL 422 (609)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 422 (609)
+...+..|...|...+++++|...|+...+ .+...+..|...|.. + ++++|++.|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 344444455555555566666655555543 244455555555555 4 6777777777777654 455666666
Q ss_pred HHHhc----cCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 007288 423 TACSH----AGLVDEGLKYFKSMNDYNVN-PNKEIYGCVVDLLGR----AGRVKEAYELIKSM-PFKPDESVWGPLLGAC 492 (609)
Q Consensus 423 ~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 492 (609)
..|.. .+++++|+.+|++..+.+.. .+...+..|...|.. .+++++|+..|++. ...++...+..|...|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666 67788888888877665521 125666677777777 67788888888776 2224555666666666
Q ss_pred HhC------CChHHHHHHHHHHhccCC
Q 007288 493 KEH------RLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 493 ~~~------~~~~~a~~~~~~~~~~~p 513 (609)
... .+.++|...++++.+...
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 543 278888888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=70.53 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK-PDESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ ... .+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456666666777777777777777775543 234566667777777777777777777766 222 35567777778888
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG 530 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 530 (609)
..|++++|...++++++..|.+...+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888877776544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-07 Score=86.96 Aligned_cols=127 Identities=13% Similarity=-0.033 Sum_probs=96.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--------------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--------------KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP- 480 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 480 (609)
.+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++. ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444455555555555555555555544332211 467788888888999999999888887 3334
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHH
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEF-AKFRKIMR 543 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 543 (609)
+...|..+..++...|++++|+..++++++++|++...+..++.++...|++++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999999999999 45666664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-05 Score=70.49 Aligned_cols=230 Identities=11% Similarity=0.049 Sum_probs=173.0
Q ss_pred HHhCC--chHHHHHHHHhHHCCCCCCHH-hHHHHHHHHHhhc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----H
Q 007288 290 YEKSG--SSECLNMFSKMKSERFSPNCF-TFTSIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALIDMY----A 360 (609)
Q Consensus 290 ~~~~~--~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 360 (609)
..+.+ .++|+.++.+++.. .|+.. .++.--..+...+ +++++...+..+.... +-+..+++.-..++ .
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 33444 67899999988874 45544 4566666666777 9999999999998875 33444454444444 4
Q ss_pred hc---CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 007288 361 KC---GNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGK--EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL-- 430 (609)
Q Consensus 361 ~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 430 (609)
+. +++++++.+++.+.+ .+..+|+.-...+...|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 45 789999999999874 46678888888888888888 99999999998643 366677777666777776
Q ss_pred ----HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHhhHHHHHHHHHhCCChHH
Q 007288 431 ----VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE-AYELIKSM-PF----KPDESVWGPLLGACKEHRLPNL 500 (609)
Q Consensus 431 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~ 500 (609)
++++++.++.+....+ -|...|+.+...+.+.|+..+ +.++..+. .. ..+...+..+..++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 8999999999977664 478889888888988888555 55677765 21 2366788888899999999999
Q ss_pred HHHHHHHHhc-cCCCCcchHHHHHH
Q 007288 501 GKLAALRVLD-LKPNMMGTYIILSN 524 (609)
Q Consensus 501 a~~~~~~~~~-~~p~~~~~~~~l~~ 524 (609)
|.++++.+.+ .+|-....|...+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999986 89976666655443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=71.43 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.+++. ...| +...+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456666677777777777877777775543 235667777777788888888888877776 2233 4567777778888
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
..|++++|...++++++..|.+...+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998888888899988888775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=71.73 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.+++. ...| +...+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455666666666666666666666665433 224556666666677777777777766665 2223 4566677777788
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
..|++++|...++++++..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888777788888887776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=79.45 Aligned_cols=121 Identities=8% Similarity=0.096 Sum_probs=84.6
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHhCCCh--HH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA-CKEHRLP--NL 500 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~ 500 (609)
...|++++|...++...+.. +.+...+..+...|...|++++|+..+++. ...| +...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34566677777777665543 235566777777777777777777777766 2223 45566666666 6677887 88
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 501 GKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 501 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
|...++++++..|++...+..++.+|...|++++|...+++..+...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88888888888888888888888888888888888888888877544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=73.21 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=86.6
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHH
Q 007288 411 VRPDR-IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGP 487 (609)
Q Consensus 411 ~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 487 (609)
+.|+. ..+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..+|...|++++|++.|++. ...| +...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34544 367778888899999999999999997765 336788889999999999999999999888 4445 4677888
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
+..++...|++++|+..+++++++.|++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 8899999999999999999999999954
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00033 Score=71.22 Aligned_cols=351 Identities=8% Similarity=-0.047 Sum_probs=162.9
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCC--CCcccHHHHHHHHHcCCC-hhHHHHHHHHHHHC-CCCC-CcchHHHHHHHh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPE--RDVVSWTVMIAGYTSFNC-HNQAWTVFVEMVRN-EVNP-NAFTLSSVLKAC 122 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~ 122 (609)
+|...+..+-. |+++.|..+|++... |++..|..-+.-..+.+. .+....+|+..... |..| +...|...+.-+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 44444544443 788999999987653 777788887777666553 45667777776653 4333 445666666554
Q ss_pred hC----CCChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhc---C-------------CCHHHHHHHHccCCC----CC
Q 007288 123 KG----MKSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATC---C-------------ISMDNARLVFNDMKW----KN 178 (609)
Q Consensus 123 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g-------------~~~~~A~~~~~~~~~----~~ 178 (609)
.. .++++.+..++++.+... +. .+..+...|... . ..+..|..+++.... .+
T Consensus 96 ~~~~~~~~~~~~vR~iy~rAL~~P--~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 96 GKIEDEQTRIEKIRNGYMRALQTP--MG--SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHTSC--CT--THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhchhhhHHHHHHHHHHHHHHhCh--hh--hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 42 246777888888887631 11 112222222210 0 011122222221110 12
Q ss_pred hhhHHHHHHHHHhcC-C------hhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhH
Q 007288 179 DVSWTTLITGYAHSG-N------GYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPV 251 (609)
Q Consensus 179 ~~~~~~li~~~~~~g-~------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 251 (609)
...|...+.--...+ . .+.+..+|+++.... +-+...|...+.-+...|+++.|..+++..... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 233444333322111 0 123455666655532 223445555555555666666666666666665 333222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCC---CHHhHHHHHHHHHhhc
Q 007288 252 MNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP---NCFTFTSIIAACATLA 328 (609)
Q Consensus 252 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~~ 328 (609)
+.. |....+.++. ++ .+...+.....+ ..+..+ ....|...+....+.+
T Consensus 249 ~~~----y~~~~e~~~~---~~-----------~l~~~~~~~~~~----------~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 249 SLY----YGLVMDEEAV---YG-----------DLKRKYSMGEAE----------SAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HHH----HHHHTTCTHH---HH-----------HHHHHTC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHhhcchhHH---HH-----------HHHHHHHhhccc----------hhhhhcccccHHHHHHHHHHHHHcC
Confidence 221 1111111111 00 000000000000 000000 1123444444444555
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFD 404 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (609)
+.+.|..+|+.+ +.. ..+..+|......-.+.+ +.+.|..+|+...+ | +...|...+......|+.+.|..+|+
T Consensus 301 ~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp CHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666 211 122233332222222222 46666666665542 2 22334445555556666677766666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 405 EMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 405 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
++. .....|...+.--...|+.+.+..++++.
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 651 13445555555555567777777766666
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=71.44 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++++|++...|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888776 3334 56777888888889999999999999999999988899999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887743
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=69.40 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC--CcchHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN--MMGTYIILSN 524 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 524 (609)
+...+..+...+...|++++|+..+++. ...| +...|..+..++...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445666777777888888888888776 2223 5667777888888999999999999999999998 8888999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 007288 525 IYAAE-GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 525 ~~~~~-g~~~~A~~~~~~m~~~~~ 547 (609)
+|... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-06 Score=75.70 Aligned_cols=129 Identities=11% Similarity=-0.042 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-C----
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMND----YNVN-PNKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKP-D---- 481 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~---- 481 (609)
.++..+...+...|++++|...+++..+ .+.. ....++..+...+...|++++|.+.+++. ...+ +
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3445555555555555555555555422 1111 12334555555566666666665555544 0011 1
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC--CC----cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP--NM----MGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
...+..+...+...|++++|...+++++++.+ ++ ..++..++.+|...|++++|...+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22344555666666777777777766655321 11 22356778888888888888888777764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.1e-06 Score=71.48 Aligned_cols=93 Identities=8% Similarity=-0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++...|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444443 1122 3334444444455555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 007288 530 GKWEEFAKFRKIMRG 544 (609)
Q Consensus 530 g~~~~A~~~~~~m~~ 544 (609)
|++++|+..|++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-06 Score=77.02 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=113.4
Q ss_pred hcCCHHHHHHHHHhcCC--C-CcchHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------
Q 007288 361 KCGNISDSQKIFSEMSD--R-DLVTWTSM-------MIGYGAHGHGKEAIELFDEMVKSGVRPD---------------- 414 (609)
Q Consensus 361 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------- 414 (609)
..++.+.|.+.|.++.+ | ....|..+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35666666666666653 2 23455555 3344444444444444444333 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----hh
Q 007288 415 ------RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDE----SV 484 (609)
Q Consensus 415 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~ 484 (609)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1233345566777888888888887775533 33325555666777888888888888766433332 25
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 485 WGPLLGACKEHRLPNLGKLAALRVLDLK--PN-MMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+..+..++...|++++|+..++++.... |. .......++.++.+.|+.++|...|+++....+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5666677888888888888888886533 43 344677788888888888888888888876443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=70.74 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 529 (609)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445677888999999999999887 3445 5677888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007288 530 GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~~~ 547 (609)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999987543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=76.94 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=87.7
Q ss_pred hcCCHHHHHH---HHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHH
Q 007288 361 KCGNISDSQK---IFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK----SGVRP-DRIVFMAVLTACSHAGLVD 432 (609)
Q Consensus 361 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~ 432 (609)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 33332222334566666666677777777777766654 11111 1235666667777777777
Q ss_pred HHHHHHHHhhhc----CCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HhhHHHHHHHHHhCCCh
Q 007288 433 EGLKYFKSMNDY----NVNP--NKEIYGCVVDLLGRAGRVKEAYELIKSM----PFKPD----ESVWGPLLGACKEHRLP 498 (609)
Q Consensus 433 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 498 (609)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++. ...++ ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766332 1111 2344666777777777877777777665 11112 22345566777888888
Q ss_pred HHHHHHHHHHhcc
Q 007288 499 NLGKLAALRVLDL 511 (609)
Q Consensus 499 ~~a~~~~~~~~~~ 511 (609)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.3e-07 Score=72.11 Aligned_cols=93 Identities=4% Similarity=-0.053 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-------hHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-------TYIIL 522 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 522 (609)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555666777777777777777665 3334 3556666777777777777777777777777664432 56667
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 007288 523 SNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 523 ~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.+|...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777788888888888877765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=72.53 Aligned_cols=103 Identities=6% Similarity=-0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACK 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 493 (609)
..+..+...+...|++++|+..|+...... +.+...|..+..+|...|++++|+..|++. ...| +...+..+..++.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 356667777888888888888888886654 336777788888888888898888888877 3334 4567777888899
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchH
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
..|++++|+..+++++++.|+++...
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999888766543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-06 Score=69.48 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 448 PNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.+...+..+...+...|++++|+..|++. ...| +...|..+..++...|++++|...+++++++.|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35666777777888888888888887776 2333 466777788888899999999999999999999888999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 007288 526 YAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 526 ~~~~g~~~~A~~~~~~m~~~ 545 (609)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-06 Score=68.90 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=89.5
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 447 NPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
+.+...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|...++++++..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 4455 67788888899999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 007288 525 IYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+|...|++++|...+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998743
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-06 Score=77.64 Aligned_cols=159 Identities=7% Similarity=-0.067 Sum_probs=109.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CC-c------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHH
Q 007288 353 NALIDMYAKCGNISDSQKIFSEMSD--RD-L------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGV---RPD--RIVF 418 (609)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~ 418 (609)
...+..+...|++++|.+.++...+ +. . ..+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3455667778888888777765442 11 1 1233455667778899999998888875321 122 3478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhc-CCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCC-CHhh
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDY-NVNPN-----KEIYGCVVDLLGRAGRVKEAYELIKSM-P------FKP-DESV 484 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~~~ 484 (609)
+.+...|...|++++|...+++..+. ...|+ ..++..+...|.+.|++++|++.+++. . ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888888999999999998887421 11112 257788888999999999998888776 1 111 1556
Q ss_pred HHHHHHHHHhCCChHHH-HHHHHHHhcc
Q 007288 485 WGPLLGACKEHRLPNLG-KLAALRVLDL 511 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 511 (609)
|..+..++...|++++| ...+++++.+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 77778889999999999 7778877653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=8.8e-06 Score=64.47 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555555555555555554332 123444555555555555555555555544 1222 34455555566666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
.|++++|...++++++..|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6666666666666666666555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-06 Score=66.50 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
....+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++++..|.+...+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 3334 6777888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...|++++|...+++..+.++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999987544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-06 Score=74.60 Aligned_cols=96 Identities=9% Similarity=-0.094 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++++.|.+...+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56667777888888888888888776 3333 566777888889999999999999999999999999999999999998
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 007288 529 EGKWEEFA-KFRKIMRGMG 546 (609)
Q Consensus 529 ~g~~~~A~-~~~~~m~~~~ 546 (609)
.|+.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888777 5555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=80.77 Aligned_cols=192 Identities=8% Similarity=-0.087 Sum_probs=127.1
Q ss_pred hhccHHHHHHHHHHHHHhCCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-------C-c--------
Q 007288 326 TLAALSCGQQVHAGIVRRGLDGNLALANAL-------IDMYAKCGNISDSQKIFSEMSD--R-------D-L-------- 380 (609)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~-~-------- 380 (609)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...++.-.+ | + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4567777777777776654 2233444444 3444444444444444444432 1 1 0
Q ss_pred ------chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--hhH
Q 007288 381 ------VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN--KEI 452 (609)
Q Consensus 381 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 452 (609)
..+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12334566778889999999999888764 3555455555667889999999999998664422 121 236
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCC---CC--HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSMPFK---PD--ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
+..+..++...|++++|++.|++.... |. ...+.....++.+.|+.++|...|+++...+|+ ......|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 677888999999999999999988212 43 235566678899999999999999999999996 5444444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=5e-06 Score=69.25 Aligned_cols=95 Identities=7% Similarity=-0.073 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
...+..+...+...|++++|++.|++. ...|+ ...|..+..++...|++++|...++++++..|.+...+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555666666666665554 33444 3455555566666666666666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 007288 525 IYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~ 544 (609)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-06 Score=66.92 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.+...+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999887 2233 56788888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 007288 528 AEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~~ 546 (609)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.2e-06 Score=71.86 Aligned_cols=127 Identities=8% Similarity=0.080 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHH-HhhcCCH--H
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL-LGRAGRV--K 467 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 467 (609)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888887753 34567888888889999999999999999866542 356777778888 7788998 9
Q ss_pred HHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 468 EAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 468 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
+|+..+++. ...| +...+..+..++...|++++|...++++++..|++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999887 3344 466777888889999999999999999999999765543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=70.23 Aligned_cols=62 Identities=15% Similarity=-0.047 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDL-------KPNMMGTY----IILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7778888888888888888888888888 99999999 99999999999999999999999873
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.6e-05 Score=70.34 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 513 PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 513 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+.++.+...|+++|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45677888899999999999999999999974
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.4e-06 Score=65.90 Aligned_cols=109 Identities=7% Similarity=-0.157 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555566667777777777777765544 224566677777777777777777777666 3334 35566777777888
Q ss_pred CCChHHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 007288 495 HRLPNLGKLAALRVLDLK------PNMMGTYIILSNIY 526 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 526 (609)
.|++++|...++++++++ |.+......+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888877 66655555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=80.98 Aligned_cols=115 Identities=9% Similarity=0.051 Sum_probs=53.5
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEG 434 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 434 (609)
.+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555442 234455555555555555555555555555531 12334555555555555555555
Q ss_pred HHHHHHhhhcCCCCChhHHHHHHHH--HhhcCCHHHHHHHHH
Q 007288 435 LKYFKSMNDYNVNPNKEIYGCVVDL--LGRAGRVKEAYELIK 474 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 474 (609)
.+.+++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555543321 122233333333 444555555555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-06 Score=68.47 Aligned_cols=105 Identities=9% Similarity=-0.074 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 494 (609)
.+..+...+...|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|++. ...| +...+..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45555666777778888888887776544 235666777777788888888888887776 2333 44566677778888
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.|++++|...+++++++.|+++......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8888888888888888888666554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=67.65 Aligned_cols=127 Identities=9% Similarity=-0.001 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555566666677777777776666532 2245566666666677777777777777665543 234556666667777
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHH--HHHHHHHhCCChHHHHHHHHHHhc
Q 007288 462 RAGRVKEAYELIKSM-PFKP-DESVWG--PLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
..|++++|.+.+++. ...| +...+. .+...+...|++++|...+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777665 2223 223332 222335566777777776665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-05 Score=68.58 Aligned_cols=108 Identities=11% Similarity=-0.033 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGAC 492 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 492 (609)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3466677777788888888888888886654 236677788888888888888888888777 3344 467788888999
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
...|++++|...+++++++.|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999998887655444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-06 Score=66.20 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...++++++..|++...+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778889999999999999999987 3334 6778888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 007288 527 AAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 527 ~~~g~~~~A~~~~~~m~~~~ 546 (609)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-05 Score=65.49 Aligned_cols=111 Identities=11% Similarity=-0.075 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPL 488 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 488 (609)
...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|+..+++. ...| +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3455555556666666666666666664432 33 455666666667777777777766665 2233 45566667
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
..++...|++++|...+++++++.|++...+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 777888888888888888888888877766666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-06 Score=67.17 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=63.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC---cchHHHHHHHHH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKPDE----SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM---MGTYIILSNIYA 527 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 527 (609)
+...+...|++++|...|++. ...|+. ..+..+..++...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 455666677777777777665 223332 355566677777888888888888888887776 566777888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 007288 528 AEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 528 ~~g~~~~A~~~~~~m~~~ 545 (609)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.1e-06 Score=66.17 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=49.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----C----HhhHHHH
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP----D----ESVWGPL 488 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~l 488 (609)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++. .+.| + ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444555555555555444332 113444444555555555555555544443 1111 1 1244555
Q ss_pred HHHHHhCCChHHHHHHHHHHhccCC
Q 007288 489 LGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
..++...|++++|++.++++++..|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5667777777777777777777666
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=80.55 Aligned_cols=95 Identities=12% Similarity=-0.061 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467778888888999999998888877 3334 56778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHHh
Q 007288 528 AEGKWEEFAK-FRKIMRG 544 (609)
Q Consensus 528 ~~g~~~~A~~-~~~~m~~ 544 (609)
..|++++|.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988874 4555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-05 Score=78.34 Aligned_cols=162 Identities=8% Similarity=-0.084 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCC-ChhH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKS-GVRPDRI----VFMAVLTACSHAGLVDEGLKYFKSMND----YNVNP-NKEI 452 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 452 (609)
+..+...|...|++++|.+.+..+... +-.++.. +.+.+...+...|++++|..+++.... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777777665541 1111111 222233334456777777777766522 22222 2446
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC---CC----cc
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-----P--FKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP---NM----MG 517 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~ 517 (609)
+..+...|...|++++|..++++. + .+| ....+..++..|...|++++|...+++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777788888888887777665 1 112 134566666778888888888888887766432 11 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677777788888888877766643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0016 Score=61.92 Aligned_cols=223 Identities=9% Similarity=0.012 Sum_probs=158.3
Q ss_pred chHHHHHHHHhHHCCCCCCH-HhHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNC-FTFTSIIAACATLA-ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKC-G-NISDSQK 370 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 370 (609)
.++|++++.+++.. .|+. ..++.--..+...+ .++++..++..+.... +-+..+++.-..++.+. + ++++++.
T Consensus 70 se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 70 SERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 78899999998874 4544 44565556666677 5999999999998765 45566676666666666 6 8899999
Q ss_pred HHHhcCCC---CcchHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-------HH
Q 007288 371 IFSEMSDR---DLVTWTSMMIGYGAHGHGK--------EAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL-------VD 432 (609)
Q Consensus 371 ~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~ 432 (609)
+++.+.+. |..+|+.-...+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+. ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 99999864 4556666655555555555 8999999999864 3366788888777777776 78
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------CCCHhh
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV--------------------KEAYELIKSM-PF-------KPDESV 484 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~p~~~~ 484 (609)
++++.++++..... -|...|+.+-..+.+.|+. ....++..++ +. .+....
T Consensus 226 eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 99999999877553 3777887777777776654 3444454444 21 256777
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHh-ccCCCCcchHHHH
Q 007288 485 WGPLLGACKEHRLPNLGKLAALRVL-DLKPNMMGTYIIL 522 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l 522 (609)
+..|...|...|+.++|.++++.+. +.+|-....|.-.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 8888899999999999999999986 6788444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-05 Score=65.12 Aligned_cols=100 Identities=8% Similarity=-0.144 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA 491 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 491 (609)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|+..+++. ...| +...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45566666666777777777777777765544 224566666777777777777777777665 2233 45566677777
Q ss_pred HHhCCChHHHHHHHHHHhccCCC
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
+...|++++|...+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77788888888888887777765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=67.55 Aligned_cols=93 Identities=16% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC------CCcc
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM----PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP------NMMG 517 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 517 (609)
++..+...+...|++++|.+.+++. +..++ ...+..+..++...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555556666655555544 00011 23455555667777777777777777765422 1244
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+..++.+|...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677889999999999999999888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0014 Score=62.12 Aligned_cols=225 Identities=11% Similarity=0.090 Sum_probs=111.9
Q ss_pred hCC--chHHHHHHHHhHHCCCCCCHHh-HHHHHHHHHhhcc----------HHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007288 292 KSG--SSECLNMFSKMKSERFSPNCFT-FTSIIAACATLAA----------LSCGQQVHAGIVRRGLDGNLALANALIDM 358 (609)
Q Consensus 292 ~~~--~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (609)
+.| .++|+.++..+... .|+..| ++.--..+...+. ++.+..++..+.... +-+..+++.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445 56778888877763 454433 3322222222221 456666666666554 3345555555555
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 007288 359 YAKCG--NISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGH-GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA---- 428 (609)
Q Consensus 359 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---- 428 (609)
+.+.| .+++++.+++.+.+ .|..+|+.-..++...|. ++++++.+.++++.. .-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 55555 36666666666653 344556655555556666 466777777776643 22444444444333332
Q ss_pred ----------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHhhHH
Q 007288 429 ----------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA-----------GRVKEAYELIKSM-PFKPDESVWG 486 (609)
Q Consensus 429 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~~ 486 (609)
+.++++++.++...... +-|...|+.+-..+.+. +.++++++.++++ ...||. .|.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chH
Confidence 33556666666665433 22455554443333333 2344555555444 333433 222
Q ss_pred HHHH-----HHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 487 PLLG-----ACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 487 ~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.+.. +....+..++....+.++.+++|....-|..+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 1111 11123444555555555555555433334333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=61.65 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP---DESVWGPLLGAC 492 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 492 (609)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.+++. ...| +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445555556666666666666654433 224455566666666666666666666655 2233 355666666777
Q ss_pred HhC-CChHHHHHHHHHHhccCCCC
Q 007288 493 KEH-RLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 493 ~~~-~~~~~a~~~~~~~~~~~p~~ 515 (609)
... |++++|...++++++..|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 777 77777777777777777754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=74.50 Aligned_cols=110 Identities=7% Similarity=-0.181 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 007288 414 DRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGA 491 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 491 (609)
+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677778888889999999999999886654 236778888888999999999999988876 5555 45677777788
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHH
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSN 524 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 524 (609)
+...|++++|...++++++++|++...+...+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 889999999999999998888865444433333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=64.99 Aligned_cols=95 Identities=11% Similarity=0.022 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC-------cchHHH
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-------MGTYII 521 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 521 (609)
..+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777766 2223 45667777788888888888888888888877755 778889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 007288 522 LSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 522 l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
++.+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=68.67 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=53.9
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3466677788888888888888888888888888888888888998899999998888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-06 Score=67.49 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHH
Q 007288 463 AGRVKEAYELIKSM-PF---KP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAK 537 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 537 (609)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..++++++..|+++..+..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665 33 23 244566666777778888888888888888888777788888888888888888888
Q ss_pred HHHHHHhC
Q 007288 538 FRKIMRGM 545 (609)
Q Consensus 538 ~~~~m~~~ 545 (609)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=8.2e-06 Score=82.96 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=63.9
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555556665555554432 123455555566666666666666665555 2233 3445555566666666666666
Q ss_pred HHHHHHhccCCCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 007288 503 LAALRVLDLKPNMMGTYIILSNI--YAAEGKWEEFAKFRK 540 (609)
Q Consensus 503 ~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 540 (609)
..+++++++.|++...+..++.+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666666666666655 566666666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.9e-05 Score=61.95 Aligned_cols=109 Identities=8% Similarity=-0.028 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HhhHHH
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PF----KPD----ESVWGP 487 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 487 (609)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++. .. .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554332 223445555555555556666655555554 11 112 445666
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+..++...|++++|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66777777788888888887777777 4555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=76.73 Aligned_cols=90 Identities=6% Similarity=-0.100 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..+++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888889999999999999999887 5555 4667888889999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 007288 527 AAEGKWEEFAKF 538 (609)
Q Consensus 527 ~~~g~~~~A~~~ 538 (609)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-05 Score=73.83 Aligned_cols=126 Identities=9% Similarity=-0.020 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPD----------------RIVFMAVLTACSHAGLVDEGLKYFKSMNDY 444 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
..|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555556666666666666666666653 222 356777777777777777777777777654
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHH-HHHHHHHh
Q 007288 445 NVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLG-KLAALRVL 509 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 509 (609)
. +.+...+..+..+|...|++++|+..|++. ...| +...+..+..++...|+.++| ...+++++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 235667777777777777777777777766 3334 345666666777777777766 33555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=63.44 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=52.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP 498 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 498 (609)
+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++. ...| +...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444555666666666666664433 124555555666666666666666666555 3333 344555566666666667
Q ss_pred HHHHHHHHHHhccCCCC
Q 007288 499 NLGKLAALRVLDLKPNM 515 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~ 515 (609)
++|+..++++++.+|++
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 77777777776666643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-05 Score=78.27 Aligned_cols=148 Identities=9% Similarity=-0.075 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 007288 381 VTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566666777778888888888877763 344332 223333333332221 13677788888
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCChHHHHH
Q 007288 461 GRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA-AEGKWEEFAK 537 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 537 (609)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..+.. ..+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888877 3344 56778888888999999999999999999999988888888877743 4566777888
Q ss_pred HHHHHHhCCC
Q 007288 538 FRKIMRGMGS 547 (609)
Q Consensus 538 ~~~~m~~~~~ 547 (609)
+|.+|.+...
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 8888776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.7e-05 Score=60.60 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=61.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHH
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNK---EIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD----ESVWGPLLGAC 492 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 492 (609)
+...+...|++++|...|+.+.+.... +. ..+..+..++.+.|++++|+..+++. ...|+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344455666666666666666443321 22 35555666667777777777766665 22232 34456666777
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHH
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYII 521 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 521 (609)
...|++++|...++++++..|++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 78888888888888888888865544333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0012 Score=62.40 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=152.7
Q ss_pred hhccH-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 326 TLAAL-SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGN----------ISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 326 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
+.|.+ ++|..+...+...+ +-+..+++.--.++...|. +++++.+++.+.. .+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34443 46788888887654 2233344433333333232 6778888888763 46678888877777
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-----
Q 007288 392 AHG--HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGL-VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA----- 463 (609)
Q Consensus 392 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 463 (609)
..+ .+++++.++.++.+.. +-|..+|+.-...+...|. ++++++.++.+.+.++. |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 777 4899999999999864 3366777777777777887 68999999999876643 777777766666555
Q ss_pred ---------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC-----------CChHHHHHHHHHHhccCCCCcchHHH
Q 007288 464 ---------GRVKEAYELIKSM-PFKP-DESVWGPLLGACKEH-----------RLPNLGKLAALRVLDLKPNMMGTYII 521 (609)
Q Consensus 464 ---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~ 521 (609)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.+++++++.|++.-.+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~ 277 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 277 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHH
Confidence 4578888888777 3344 667777666555554 45789999999999999987544444
Q ss_pred HHHH---HHhcCChHHHHHHHHHHHhCCC
Q 007288 522 LSNI---YAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 522 l~~~---~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
++.. ....|..+++...+.++++-++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3332 2246888899999999987433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=67.12 Aligned_cols=76 Identities=12% Similarity=-0.027 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM-GTYIILSNI 525 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 525 (609)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++. .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457777888888899999998888877 3344 466788888999999999999999999999999776 334444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00032 Score=70.31 Aligned_cols=188 Identities=7% Similarity=0.002 Sum_probs=83.0
Q ss_pred HHHHhCC-chHHHHHHHHhHHCCCCCCH----------------HhHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CCch
Q 007288 288 AGYEKSG-SSECLNMFSKMKSERFSPNC----------------FTFTSIIAACATLAALSCGQQVHAGIVRRGL-DGNL 349 (609)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~m~~~~~~p~~----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 349 (609)
..+.+.| +++|++.|.+..+....... ..+..+...|...|++++|...+..+.+.-. .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455556 66677766666654321110 1244455555556666666555555443110 0111
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--C
Q 007288 350 ----ALANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS--GV--R 412 (609)
Q Consensus 350 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~ 412 (609)
.+.+.+...+...|+++.|..+++.... .+ ..++..+...|...|++++|..++++.... +. +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222233334555555555544331 01 123444555555555555555555554431 11 1
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 413 PD-RIVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVNPN----KEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 413 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
+. ..++..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 124445555555555555555555544211 11101 12334444444555555555554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00039 Score=72.00 Aligned_cols=169 Identities=8% Similarity=-0.040 Sum_probs=133.0
Q ss_pred CHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 007288 364 NISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGH----------GKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG- 429 (609)
Q Consensus 364 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~- 429 (609)
.-++|.+.++.+.. | +...|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777777763 3 44567666666666666 899999999999853 335668888888888888
Q ss_pred -CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhC----------
Q 007288 430 -LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG-RVKEAYELIKSM-PFKP-DESVWGPLLGACKEH---------- 495 (609)
Q Consensus 430 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 495 (609)
+++++++.++++.+.... +..+|+.-..++.+.| .++++++.++++ ...| +...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999776643 7888888888888888 899999999888 4455 667787777665552
Q ss_pred ----CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 007288 496 ----RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEE 534 (609)
Q Consensus 496 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 534 (609)
+.++++.+.+.+++..+|++..+|..+..++.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999988655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-05 Score=66.10 Aligned_cols=95 Identities=15% Similarity=-0.057 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----------------HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-----------------ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
.+..+...+.+.|++++|++.|++. ...|+ ...|..+..++...|++++|+..+++++++.|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555555666666666666554 11111 26777788899999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 514 NMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
++...+..++.+|...|++++|...+++..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999998743
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=65.00 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-------CCCC-HhhH----HHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-P-------FKPD-ESVW----GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666554 3 3775 4567 788899999999999999999999999977665
Q ss_pred HHHHH
Q 007288 519 YIILS 523 (609)
Q Consensus 519 ~~~l~ 523 (609)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=64.23 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHhhhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHH
Q 007288 428 AGLVDEGLKYFKSMNDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|++.+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355556666666665432 1223445556666666666666666666665 2223 34555556666777777777777
Q ss_pred HHHHHhccCCCCcc
Q 007288 504 AALRVLDLKPNMMG 517 (609)
Q Consensus 504 ~~~~~~~~~p~~~~ 517 (609)
.++++++..|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 77777777665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.9e-05 Score=74.52 Aligned_cols=122 Identities=10% Similarity=-0.039 Sum_probs=85.8
Q ss_pred HhccCCHHHHHHHHHHhhhc---CCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDY---NVNP----NKEIYGCVVDLLGRAGRVKEAYELIKSM---------PFKPD-ESVWGP 487 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 487 (609)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776665221 1111 2456777777777778888777777665 23343 346777
Q ss_pred HHHHHHhCCChHHHHHHHHHHhc-----cCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 488 LLGACKEHRLPNLGKLAALRVLD-----LKPNMMG---TYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|...|..+|++++|+.+++++++ ++|+.+. ....+..++...|++++|..++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888889999999988888876 4665544 44568888889999999999999998743
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.3e-05 Score=73.82 Aligned_cols=151 Identities=9% Similarity=-0.006 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG 429 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 429 (609)
..+..+...+.+.|++++|...|+...+-+.... .+...++..++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4567788889999999999999998763221111 1222333344333221 136778888899999
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHH-HHhCCChHHHHHHHH
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGA-CKEHRLPNLGKLAAL 506 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~-~~~~~~~~~a~~~~~ 506 (609)
++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++. .+.|+.. .+..+... ....+..+.+...++
T Consensus 245 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987654 336778888999999999999999999988 5566543 34444444 334567778888999
Q ss_pred HHhccCCCCc
Q 007288 507 RVLDLKPNMM 516 (609)
Q Consensus 507 ~~~~~~p~~~ 516 (609)
++++..|.++
T Consensus 324 ~~l~~~p~~~ 333 (338)
T 2if4_A 324 GIFKGKDEGG 333 (338)
T ss_dssp ----------
T ss_pred HhhCCCCCCC
Confidence 9999888553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.9e-05 Score=64.05 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcC----CCC-ChhH
Q 007288 383 WTSMMIGYGAHGHGKEAIELFDEMVKSGV-RPD----RIVFMAVLTACSHAGLVDEGLKYFKSMNDYN----VNP-NKEI 452 (609)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 452 (609)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.. ..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555554443100 011 1244555555556666666666655542211 000 1334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-------PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555556666666666666666554 1101 1234555556677777777777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=7e-06 Score=64.48 Aligned_cols=92 Identities=12% Similarity=-0.091 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC------cchHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM------MGTYI 520 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 520 (609)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456677778888888888888888776 3334 56677778888999999999999999999999977 66777
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 007288 521 ILSNIYAAEGKWEEFAKFRK 540 (609)
Q Consensus 521 ~l~~~~~~~g~~~~A~~~~~ 540 (609)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888877777766655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.83 E-value=7.1e-05 Score=57.45 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=60.2
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+...|..+..++...|++++|+..++++++.+|+++..|..++.+|...|++++|+..+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678888899999999999999999999999999999999999999999999999999998763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=7.2e-05 Score=75.63 Aligned_cols=66 Identities=8% Similarity=-0.122 Sum_probs=61.1
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
...|..+..++.+.|++++|+..++++++++|++...|..++.+|...|++++|+..|++..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467888889999999999999999999999999999999999999999999999999999988544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=54.09 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|...++++++.+|.+...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445556666677777777777777665 2223 45566677777888888888888888888888877778887777776
Q ss_pred hcC
Q 007288 528 AEG 530 (609)
Q Consensus 528 ~~g 530 (609)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.7e-05 Score=65.52 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCC
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEG-----------KWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 547 (609)
+++|+..++++++++|++..+|..++.+|.+.| ++++|++.|++..+.++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999999875 89999999999988544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=71.34 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 007288 415 RIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKP-DESVWGPLLGACK 493 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 493 (609)
...+..+...+.+.|++++|+..|++..+.- +.. ......+++.+ ..| +...|..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888887775421 000 00111111111 222 4567788889999
Q ss_pred hCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 494 EHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
+.|++++|+..++++++++|++...|..++.+|...|++++|+..+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998743
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00022 Score=56.28 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=63.4
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 469 AYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 469 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
|++.+++. ...| +...+..+..++...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555544 3344 56677778888999999999999999999999988899999999999999999999999988763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00031 Score=52.75 Aligned_cols=69 Identities=9% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CCHhhHHHHHHHHHhCCC---hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 480 PDESVWGPLLGACKEHRL---PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 480 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
++...+..+..++...++ .++|...++++++.+|++......++..+.+.|++++|+..|+++.+..+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456667777777654444 689999999999999999999999999999999999999999999987664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00064 Score=55.66 Aligned_cols=111 Identities=10% Similarity=-0.035 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHH
Q 007288 430 LVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAA 505 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 505 (609)
++++|..+|++..+.| .++ .. |...|...+..++|++.|++.-..-+...+..|...|.. .+++++|...+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 3444555555544433 111 11 444444444455555555544212344444555555554 56666777777
Q ss_pred HHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 547 (609)
+++.+. .++..+..|+.+|.. .+++++|..++++..+.|.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 766655 346677777777777 6777777777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=55.47 Aligned_cols=67 Identities=7% Similarity=-0.102 Sum_probs=61.6
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|+..+++..+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567778889999999999999999999999999999999999999999999999999999987544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.47 E-value=5.6e-05 Score=73.03 Aligned_cols=234 Identities=9% Similarity=0.105 Sum_probs=158.8
Q ss_pred hhHHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCC
Q 007288 46 SILATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGM 125 (609)
Q Consensus 46 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 125 (609)
+.+|+.|..++.+.|++.+|++.|-+. .|+..|..+|.+..+.|++++-+..+...++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 457999999999999999998877554 4566789999999999999999999877666533 334446888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCC------------------------CChhh
Q 007288 126 KSLSNAALVHGMAIKEGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKW------------------------KNDVS 181 (609)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~------------------------~~~~~ 181 (609)
+++.+-++++ -.|+..-...+.+-|...| .++.|.-+|..+.. .++.+
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~-lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEK-MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSC-CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHcc-CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 8876544332 2356666667777777777 88888887776652 37788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
|-.+-.+|...+.+.-|.-.--.++- .......++..|-..|.+++-..+++.-.... ......|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 99999999999988877655444332 11222334555677788887777776655221 3455667777767766
Q ss_pred cCCHHHHHHHHHhcCC----C-------ChhHHHHHHHHHHhCC-chHH
Q 007288 262 FDCLSDANQYFDEMTE----K-------DLITWNTIIAGYEKSG-SSEC 298 (609)
Q Consensus 262 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~-~~~a 298 (609)
- ++++..+.++.... | ....|..++-.|.+-. ++.|
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 4 44555554444322 1 3345666666666555 5544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00076 Score=68.07 Aligned_cols=121 Identities=15% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHhhh-----cCC-CC-ChhHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKS---GVRP---DR-IVFMAVLTACSHAGLVDEGLKYFKSMND-----YNV-NP-NKEIYGC 455 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~---g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~ 455 (609)
+...|++++|+.++++.++. -+.| +. .+++.|...|...|++++|..++++..+ .|. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777777766666541 1122 22 3667777777777777777777766522 121 11 2445677
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHh-hHHHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 456 VVDLLGRAGRVKEAYELIKSM---------PFKPDES-VWGPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
|...|...|++++|+.++++. +..|+.. +...+-.++...+.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888777777665 2233333 233344666677788888888877754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0035 Score=64.84 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 393 HGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGL----------VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
....++|++.++++... .|+. ..|+.--..+...|+ ++++++.++.+.+.+. -+..+|+.-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34457889999999984 5554 466665566666666 8999999999977664 37888888888899
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCC-ChHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-------
Q 007288 462 RAG--RVKEAYELIKSM-PFKP-DESVWGPLLGACKEHR-LPNLGKLAALRVLDLKPNMMGTYIILSNIYAAE------- 529 (609)
Q Consensus 462 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 529 (609)
+.| +++++++.++++ ...| +...|+.-..++.+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3333 6778888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhCCC
Q 007288 530 -------GKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 530 -------g~~~~A~~~~~~m~~~~~ 547 (609)
+.++++++++++.....+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988876433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0024 Score=52.18 Aligned_cols=112 Identities=9% Similarity=-0.065 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEA 469 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 469 (609)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988887 44444 6666777778888999999887765 66777778888877 7899999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCC
Q 007288 470 YELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 513 (609)
++.|++.-..-+...+..|...|.. .++.++|...++++.+...
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999887333467777888888888 8899999999999888754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00029 Score=70.00 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=80.3
Q ss_pred HHHhhcCCHHHHHHHHHhC------CCCCC----HhhHHHHHHHHHhCCChHHHHHHHHHHhc-----cCCC---CcchH
Q 007288 458 DLLGRAGRVKEAYELIKSM------PFKPD----ESVWGPLLGACKEHRLPNLGKLAALRVLD-----LKPN---MMGTY 519 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~ 519 (609)
..+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|+ -...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344566667776666554 11222 34666777778888888888888887765 2343 34578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCcccCceeEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 007288 520 IILSNIYAAEGKWEEFAKFRKIMRGMGSKKEVGMSWIEVRDKVCGFIANDKMGSHTQYVYGVLEMLIRHMN 590 (609)
Q Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 590 (609)
+.|+.+|...|++++|..++++..+--. ..-...||...+.+..+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999876211 1224579999998888888877775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00059 Score=50.76 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=59.6
Q ss_pred HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 482 ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
...+..+...+...|++++|...++++++..|.+...+..++.+|...|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677778889999999999999999999999999999999999999999999999999998743
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00021 Score=58.98 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=53.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLV----------DEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
+.+.+++|.+.+++..+.. +-+...|..+..++...+++ ++|+..|++..+.+.. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445556666666655532 22344555555555554443 3444444444443311 3334444444444
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 462 RAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
..|.+ .|+.. ...|++++|+..|+++++++|++.
T Consensus 92 ~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred Hhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 43332 22221 012689999999999999999654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=51.32 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhcc
Q 007288 434 GLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDL 511 (609)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 511 (609)
|+..|++..+.. +.+...+..+...|...|++++|+..+++. ...| +...|..+..++...|++++|...+++++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555554332 224555556666666666666666666555 2223 3445666666677777777777777777666
Q ss_pred CC
Q 007288 512 KP 513 (609)
Q Consensus 512 ~p 513 (609)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 65
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0011 Score=65.68 Aligned_cols=82 Identities=10% Similarity=-0.023 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhc-----cCCC---CcchHHHHHH
Q 007288 463 AGRVKEAYELIKSM---------PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLD-----LKPN---MMGTYIILSN 524 (609)
Q Consensus 463 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~---~~~~~~~l~~ 524 (609)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+ -...|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666655544 12232 34667777778888888888888887765 3443 3457888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 007288 525 IYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 525 ~~~~~g~~~~A~~~~~~m~~ 544 (609)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998876
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=49.56 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHhCCChHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPNMMG-TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+...|++++|...++++++..|++.. .+..++.+|...|++++|+..+++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555555 555555555555555555555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0023 Score=48.81 Aligned_cols=65 Identities=6% Similarity=-0.058 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3445555666666666666666666655 2223 344556666666666666666666666666544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0006 Score=66.08 Aligned_cols=225 Identities=10% Similarity=0.105 Sum_probs=157.7
Q ss_pred ChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHH
Q 007288 61 LIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVFVEMVRNEVNPNAFTLSSVLKACKGMKSLSNAALVHGMAIK 140 (609)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (609)
++++|.+.-++...| ..|..+..+....+...+|++.|-+. -|...|..++.++.+.|.+++-..++...++
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444444444444 46999999999999999998876432 2778899999999999999999998887776
Q ss_pred hCCCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCC-----------
Q 007288 141 EGLEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEG----------- 209 (609)
Q Consensus 141 ~~~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------- 209 (609)
.. .++.+=+.|+-+|++.+ +..+-++.+ ..+|......+.+-|...|.++.|.-+|..+....
T Consensus 112 ~~--ke~~IDteLi~ayAk~~-rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTN-RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSC-SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred Hh--cccccHHHHHHHHHhhC-cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 53 35567789999999998 655433222 23566666777777777887777776665432211
Q ss_pred ---------CCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---C
Q 007288 210 ---------VEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT---E 277 (609)
Q Consensus 210 ---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 277 (609)
-.-+..||..+-.+|...+.+..|...--.++-. +.-...++..|-+.|.+++-+.+++.-. .
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 1236778999999999999888775443333322 1223346777888999999888888754 3
Q ss_pred CChhHHHHHHHHHHhCCchHHHHHHHH
Q 007288 278 KDLITWNTIIAGYEKSGSSECLNMFSK 304 (609)
Q Consensus 278 ~~~~~~~~li~~~~~~~~~~a~~~~~~ 304 (609)
.....|+.|.-.|++-..++..+.++.
T Consensus 261 AHmGmFTELaILYsKY~PeKlmEHlkl 287 (624)
T 3lvg_A 261 AHMGMFTELAILYSKFKPQKMREHLEL 287 (624)
T ss_dssp CCHHHHHHHHHHHHSSCTTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466778888888888776666655543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.13 Score=40.35 Aligned_cols=141 Identities=10% Similarity=-0.007 Sum_probs=105.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++..-+ -.| ...+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHH
Confidence 44568888888888888763 3566777777666666666666666665522 112 1356777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 470 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..-+-.++. +.......+.....+|+-+.-..++..++.-.|.++....-++.+|.+.|+..+|.+++.+..++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 776666642 55566777888999999999999999977766668999999999999999999999999999999985
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.028 Score=51.19 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=72.2
Q ss_pred HHHHHHHHHhC-CCCCC---HhhHHHHHHHHHh-----CCChHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CChHH
Q 007288 466 VKEAYELIKSM-PFKPD---ESVWGPLLGACKE-----HRLPNLGKLAALRVLDLKPNM-MGTYIILSNIYAAE-GKWEE 534 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 534 (609)
...|...+++. .+.|+ ...|..|...|.+ .|+.++|.+.|+++++++|+. ...+...++.++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 55666 5678888888888 599999999999999999964 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCcccCc
Q 007288 535 FAKFRKIMRGMGSKKEVG 552 (609)
Q Consensus 535 A~~~~~~m~~~~~~~~~~ 552 (609)
|.+.+++.....+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999977765454
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.008 Score=59.52 Aligned_cols=91 Identities=9% Similarity=-0.040 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHhhh---cCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHH
Q 007288 428 AGLVDEGLKYFKSMND---YNVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM---------PFKPD-ESVWGPLLG 490 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 490 (609)
.|++++|+.++++..+ .-+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777766666522 111121 355667777777777777777777665 23343 346777778
Q ss_pred HHHhCCChHHHHHHHHHHhc-----cCCCCcch
Q 007288 491 ACKEHRLPNLGKLAALRVLD-----LKPNMMGT 518 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 518 (609)
.|..+|++++|+.+++++++ ++|+.+.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 88888888888888888766 46655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.011 Score=48.23 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHhhHHHHHHHHHhCCChHHHHHHH
Q 007288 433 EGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAG---RVKEAYELIKSM-PFK-P--DESVWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
.+.+.|.+..+.+. ++..+.-.+..++++.+ +.++++.++++. ... | +...+..|.-++.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444433332 34444444555555554 333455544444 111 2 1223333334444555555555555
Q ss_pred HHHhccCCC
Q 007288 506 LRVLDLKPN 514 (609)
Q Consensus 506 ~~~~~~~p~ 514 (609)
+.+++++|+
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 555555553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.016 Score=57.36 Aligned_cols=98 Identities=8% Similarity=-0.112 Sum_probs=62.7
Q ss_pred HHHhccCCHHHHHHHHHHhhhc---CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HhhH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDY---NVNPN----KEIYGCVVDLLGRAGRVKEAYELIKSM---------PFKPD-ESVW 485 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~ 485 (609)
..+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344566777777777666321 11121 346677777777777777777777665 23343 3466
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhc-----cCCCCcchHH
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLD-----LKPNMMGTYI 520 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 520 (609)
+.|...|..+|++++|+.+++++++ ++|+.+.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 7777888888888888888888766 4676554433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.009 Score=45.04 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=56.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHh-hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DES-VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
....+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|...++++++++|++...+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 445667788888888888776 3344 345 67777788888899999999999999999987766632 344
Q ss_pred HHHHHHHHHH
Q 007288 533 EEFAKFRKIM 542 (609)
Q Consensus 533 ~~A~~~~~~m 542 (609)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.033 Score=52.90 Aligned_cols=134 Identities=16% Similarity=0.053 Sum_probs=58.3
Q ss_pred CCcchHHHHHHHHH--hc---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc---C--CHHHH---HHHHHHhhh
Q 007288 378 RDLVTWTSMMIGYG--AH---GHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHA---G--LVDEG---LKYFKSMND 443 (609)
Q Consensus 378 ~~~~~~~~li~~~~--~~---g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~---~--~~~~a---~~~~~~~~~ 443 (609)
.+...|...+.+.. .. .+..+|..+|++.++. .|+. ..+..+..++... + ..... ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666655432 22 2346788888888873 5653 3444444333300 0 00000 001111000
Q ss_pred -cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 444 -YNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 444 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 011223444444444444445555555555444 2234444443444444455555555555555555555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.031 Score=53.12 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHh---hcC-----C---HHHHHHHH
Q 007288 411 VRPDRIVFMAVLTACS--HA---GLVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLLG---RAG-----R---VKEAYELI 473 (609)
Q Consensus 411 ~~p~~~~~~~ll~~~~--~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---~~g-----~---~~~A~~~~ 473 (609)
.+.+...|...+++.. .. .+..+|..+|++..+.. |+ ...|..+..+|. ..+ . ...+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3455667777776543 33 34578999999997754 44 334443333332 111 1 11233322
Q ss_pred HhCC-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 474 KSMP-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 474 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
..+. ...+..++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....++.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3332 234677787777777778999999999999999998 5778889999999999999999999999886553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.44 Score=51.73 Aligned_cols=152 Identities=11% Similarity=0.133 Sum_probs=87.5
Q ss_pred HHHHhcCChhhHHH-HHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 007288 187 TGYAHSGNGYGGLG-VFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCL 265 (609)
Q Consensus 187 ~~~~~~g~~~~a~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 265 (609)
......+++++|.+ ++.. ++ +...+..++..+.+.|..+.|.++.+.. ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 33445677777765 4311 11 1222355666667777777776654321 1123445677888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 007288 266 SDANQYFDEMTEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRG 344 (609)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 344 (609)
++|.++.+.+. +...|..+...+.+.+ .+.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888877664 4567888888888888 8888888877653 3344444445666665555544444433
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007288 345 LDGNLALANALIDMYAKCGNISDSQKIFS 373 (609)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (609)
. ++.-..+|.+.|++++|.+++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHH
Confidence 1 2333444555666666655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.31 Score=52.95 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777766553 446777777777777777777777776542 22333334445555554444
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
-+.....|- ++.-..+|.+.|++++|++++.++
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444333221 122333444556666666555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.038 Score=42.16 Aligned_cols=71 Identities=13% Similarity=-0.076 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 452 IYGCVVDLLGRAGRVKEAYELIKSM-----P----FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
-+-.|...+.+.|++..|...|+.. + -.+....+..|..++.+.|+++.|...+++++++.|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555666666665555544 0 123456677888889999999999999999999999876654444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.029 Score=45.66 Aligned_cols=87 Identities=7% Similarity=0.049 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhhcCCCC--ChhHHHHHHHHHhhcCCHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG---LVDEGLKYFKSMNDYNVNP--NKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 469 (609)
....+.+-|.+..+.|. ++..+-..+..++++.+ ++++++.+++...+.+ .| +...+-.|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666553 56666666777777776 5567888888775544 23 244445566677788888888
Q ss_pred HHHHHhC-CCCCCHh
Q 007288 470 YELIKSM-PFKPDES 483 (609)
Q Consensus 470 ~~~~~~~-~~~p~~~ 483 (609)
++.++.+ .+.|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 8888777 5556544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.071 Score=39.59 Aligned_cols=67 Identities=10% Similarity=-0.041 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 448 PNKEIYGCVVDLLGRAGR---VKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
.+...+..+..++...++ .++|..++++. ...|+ ......+...+.+.|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666666666654444 57777777766 34443 444555556677778888888888888777775
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.6 Score=39.00 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=55.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 358 MYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... |..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344556666666665555 3455666666666666666666666665432 22333334445555554444
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
-+.....| . ++.-...+.-.|+++++.++|.+.+
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44333323 1 2333344445566666666666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.15 Score=39.83 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
....|+-++.+.|+|++|.++++.+.+
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444455555555555555554444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.14 Score=53.84 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=50.9
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMR 543 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 543 (609)
..|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 557889999999999999999999999999999999999999999999998884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.15 Score=38.83 Aligned_cols=65 Identities=11% Similarity=-0.081 Sum_probs=54.7
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLK-------PNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+..-+-.+...+...++++.|...++++++.. +.....+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677888999999999999999998742 345668899999999999999999999999874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.32 Score=38.00 Aligned_cols=88 Identities=13% Similarity=-0.082 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHhhHHHHHHHHHhCCChHHHHH
Q 007288 431 VDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKE---AYELIKSM-PFK-P--DESVWGPLLGACKEHRLPNLGKL 503 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~ 503 (609)
...+.+-|......|. ++..+--.+..++.++.+... ++.+++++ ... | .......|.-++.+.|+++.|..
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444555555544343 566666667777777776665 77777766 222 3 22233445577889999999999
Q ss_pred HHHHHhccCCCCcchH
Q 007288 504 AALRVLDLKPNMMGTY 519 (609)
Q Consensus 504 ~~~~~~~~~p~~~~~~ 519 (609)
.++.+++.+|+|..+.
T Consensus 96 ~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999765443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=5.9 Score=40.93 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRI----VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
.+.+.|...+....+.+ ..+.. ....+.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876533 22333 22233333444453556666666653322 2333333334444577999999
Q ss_pred HHHHHhCCCCC-CHhhHHH-HHHHHHhCCChHHHHHHHHHHhc
Q 007288 470 YELIKSMPFKP-DESVWGP-LLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 470 ~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
...|+.|+..+ +..-|.- +..++...|+.++|...++.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999885433 2222322 33667788899999988888875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=1.6 Score=34.71 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 500 LGKLAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 500 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++.+++.+....| ........|+-++.+.|+|++|.++.+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44445555554444 2233444455555555555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=2.5 Score=38.51 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHhcCCCCc--chHHHHHHH-HHhc--C------CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 007288 362 CGNISDSQKIFSEMSDRDL--VTWTSMMIG-YGAH--G------HGKEAIELFDEMVKSGVRPD---RIVFMAVLTACSH 427 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 427 (609)
.|+..+-...+..+...++ ..|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444455555555554333 345555443 2222 2 23456666666666 4565 3466667766766
Q ss_pred c-----CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 007288 428 A-----GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRA-GRVKEAYELIKSM 476 (609)
Q Consensus 428 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 476 (609)
. |+.++|.+.|++..+.+..-+..++..+.+.+++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 77777777777776655333466666677777764 7777777777766
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.25 E-value=5.2 Score=37.07 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=95.2
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCcchHHHHHHHhh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTV----FVEMVRNEVNPNAFTLSSVLKACK 123 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 123 (609)
.|.++..-|.+++++++|++++ ..-...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL-----------~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELI-----------SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555666666666666666653 2233345566777666664 444556788888888877777765
Q ss_pred CCCC-hHHHHHHHHHHHHh----C--CCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhc---C
Q 007288 124 GMKS-LSNAALVHGMAIKE----G--LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHS---G 193 (609)
Q Consensus 124 ~~~~-~~~a~~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 193 (609)
.... -..-.++.+.+++. | ..-++.....+...|.+.+ ++.+|+..|-.-...|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~-~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD-FVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5331 11223444444433 2 2236677788888888888 888888877633323455555555555444 3
Q ss_pred ChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 007288 194 NGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242 (609)
Q Consensus 194 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 242 (609)
...++--.+ -..++ -+...|++..|..+++...+
T Consensus 183 ~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332221111 11122 23456777777777776543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.09 E-value=2.6 Score=33.15 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 362 CGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
+|++......+-.+. .+...++..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444443333 2334556667778888888888888888644 35777888888888888888888888888888
Q ss_pred hhcCCC
Q 007288 442 NDYNVN 447 (609)
Q Consensus 442 ~~~~~~ 447 (609)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.77 E-value=13 Score=40.25 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=137.7
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhHHHHHHHH
Q 007288 223 ACASTGWVSFGKLIHAAVIKHGFGSNLP--VMNSILDMYCRFDCLSDANQYFDEMTE-KD----------LITWNTIIAG 289 (609)
Q Consensus 223 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 289 (609)
+....|+.+++..++......+-..+.. .-..+.-+....|.-+++..++..... .+ ...-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888877776544321012222 222233334455555566665555332 22 1223344444
Q ss_pred HHhCC--chHHHHHHHHhHHCCCCCCHHhHH--HHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH--HhcC
Q 007288 290 YEKSG--SSECLNMFSKMKSERFSPNCFTFT--SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY--AKCG 363 (609)
Q Consensus 290 ~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g 363 (609)
++-.| .+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...+.-++ .-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 55556 5778888877775321 1111111 22223345677788888887776532 333333344433 3678
Q ss_pred CHHHHHHHHHhcCC-CCcc-hHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007288 364 NISDSQKIFSEMSD-RDLV-TWT---SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438 (609)
Q Consensus 364 ~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
+.+.+..+++.+.. .+.. -|. ++..+|+..|+.....++++.+... ...+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 87877777777652 3332 233 3445677889987777799888864 2223333333444555566666667777
Q ss_pred HHhhhcCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHhhHH
Q 007288 439 KSMNDYNVNPNKEIYGCVVDLLGRAGRV-KEAYELIKSMPFKPDESVWG 486 (609)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~ 486 (609)
+.+.+.+ .|.+..-..+.-+....|.. .++++++..+...+|..+-.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq 665 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQ 665 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHH
Confidence 6665433 44444444444444445543 56777777774444444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.43 E-value=0.89 Score=36.55 Aligned_cols=60 Identities=8% Similarity=-0.105 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHH
Q 007288 463 AGRVKEAYELIKSM-PF-KPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIIL 522 (609)
Q Consensus 463 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 522 (609)
.++.++|.++|+.+ .. +-=...|-.....-.++|+...|..++.+++++.|.....+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 36777777777666 11 01155666666777789999999999999999888554444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.30 E-value=4.4 Score=33.82 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=93.2
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007288 322 AACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIE 401 (609)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (609)
......|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|...|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3445679999999987765 3677899999999999999999999998863 4556666777888888777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007288 402 LFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMP 477 (609)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
+-+.....|- ++.....+...|+++++.++|.+... -|... -.....|..+.|.++.++++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 7666665542 34555566778999999999876522 12111 11123577788888888875
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.7 Score=37.12 Aligned_cols=56 Identities=9% Similarity=-0.034 Sum_probs=45.5
Q ss_pred HhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 493 KEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 493 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
...++.++|.++|+.++.+...-...|...+.--.++|+...|.+++.+....+.+
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 34479999999999998764444667777777778999999999999999987764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.82 E-value=1.6 Score=34.20 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=24.9
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 500 LGKLAALRVLDLKP-NMMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 500 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
+++.+++.+.+..| .....+..|+-++.+.|+|++|.++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555444 2234455566666666666666666666654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.45 E-value=11 Score=35.08 Aligned_cols=168 Identities=7% Similarity=-0.051 Sum_probs=99.4
Q ss_pred HHhHHHHHHHccCChhHHHHhhccCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHHHHCCCCCCcchHHHHHHHhh
Q 007288 48 LATNLIKSYFDEGLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAWTVF----VEMVRNEVNPNAFTLSSVLKACK 123 (609)
Q Consensus 48 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 123 (609)
.|.++..-|.+++++++|++++ ..-...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL-----------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDIL-----------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5667777788888888887763 22333455667776666554 44556788888888888887776
Q ss_pred CCCChH-HHHHHHHHHHH----hC--CCCCcchhhHHHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 007288 124 GMKSLS-NAALVHGMAIK----EG--LEGSIYVENSLMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGY 196 (609)
Q Consensus 124 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 196 (609)
....-+ .-..+.+.+++ .| ..-++.....+...|.+.+ ++.+|+..|-.-..++...|..++.-+.+.+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~-~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG-EFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT-CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 655321 22334444443 33 3346677778888888888 8988888885333333356655555555444322
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 007288 197 GGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIK 242 (609)
Q Consensus 197 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 242 (609)
++- ...-..++ -|...+++..|..+++...+
T Consensus 185 e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 221 11111222 24446677777776665554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.41 E-value=27 Score=37.83 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007288 167 ARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLL 207 (609)
Q Consensus 167 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 207 (609)
+.++|..+.. .-|..++....+.++.+.+.++|.++..
T Consensus 221 l~~Iy~k~~~---~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 221 SFDFLMNMPN---CDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHSSS---CCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCc---hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555542 3577788888889999999999999864
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=1.3 Score=43.12 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcccCce
Q 007288 485 WGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG-----MGSKKEVGM 553 (609)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 553 (609)
...++.++...|+++++...+..++..+|-+...+..++.+|.+.|+..+|.+.|++..+ .|+.|.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344567788899999999999999999998888999999999999999999999988764 478777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.08 E-value=16 Score=36.10 Aligned_cols=181 Identities=8% Similarity=0.037 Sum_probs=113.7
Q ss_pred chHHHHHHHHhHH-----CCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhcCC-
Q 007288 295 SSECLNMFSKMKS-----ERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMY----AKCGN- 364 (609)
Q Consensus 295 ~~~a~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~- 364 (609)
.+.|++.+..+.+ ............++..|...++++...+.+..+.+..-.. ......+++.+ .....
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~ 110 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSL 110 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCch
Confidence 6777776655543 2344456678888999999999999888777665432222 12223333322 22332
Q ss_pred -HHHHHHHHHhcCC---CC--c-----chHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCH---HHHHHHHHHHhcc
Q 007288 365 -ISDSQKIFSEMSD---RD--L-----VTWTSMMIGYGAHGHGKEAIELFDEMVK--SGVRPDR---IVFMAVLTACSHA 428 (609)
Q Consensus 365 -~~~A~~~~~~~~~---~~--~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~---~~~~~ll~~~~~~ 428 (609)
.+.-..+.+.+.. .- + .....|...|-..|++.+|..++.++.. .|..... ..+...++.|...
T Consensus 111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC
Confidence 2333444444432 11 1 1234567788889999999999999875 2332222 3666777889999
Q ss_pred CCHHHHHHHHHHhhh----cCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 429 GLVDEGLKYFKSMND----YNVNPN--KEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
+++..|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988721 121222 245667778888889999998877665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.97 E-value=15 Score=35.27 Aligned_cols=161 Identities=10% Similarity=0.014 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHh-C---CCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcCC---CCcchH---
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRR-G---LDGNLALANALIDMYAKC-GNISDSQKIFSEMSD---RDLVTW--- 383 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~---~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 383 (609)
.....+...+.+.|+.++...++...... + -.-.......+++.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677766666666544321 0 001223344555555543 222222233222221 111222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H---HHHHHHHHHHhccCCHHHHHHHHHHhhh--cCCCCChhHH
Q 007288 384 ---TSMMIGYGAHGHGKEAIELFDEMVKSGVRPD--R---IVFMAVLTACSHAGLVDEGLKYFKSMND--YNVNPNKEIY 453 (609)
Q Consensus 384 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 453 (609)
..++..|...|++.+|.+++.++.+.=-+.| . ..+..-+..|...+++.++...+..... ..+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1456666777777777777766665211111 1 2444555566667777777777666622 1222222221
Q ss_pred H----HHHHHHh-hcCCHHHHHHHHHh
Q 007288 454 G----CVVDLLG-RAGRVKEAYELIKS 475 (609)
Q Consensus 454 ~----~l~~~~~-~~g~~~~A~~~~~~ 475 (609)
. .-...+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1112233 56667776666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.29 E-value=3.5 Score=43.53 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHh
Q 007288 389 GYGAHGHGKEAIELFDEMVKSGVRPDR-IVFMAVLTACSHAGLVDEGLKYFKSM 441 (609)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
-+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567888888888888777 35554 48888888888888888888777766
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.66 E-value=9 Score=43.20 Aligned_cols=64 Identities=11% Similarity=-0.164 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-----TYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
-|..++..+.+.+.++.+.+..+.+++..+.+.. .|..+...+...|+|++|...+-.+.....
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 3566778888999999999998888875442222 577788889999999999988877765433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.88 E-value=18 Score=35.56 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=34.8
Q ss_pred hccHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007288 327 LAALSCGQQVHAGIVRR-----GLDGNLALANALIDMYAKCGNISDSQKIFSEMS 376 (609)
Q Consensus 327 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (609)
.++++.|.+.+-.+.+. +...+......++..+...|+++...+.+..+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 37788888877666643 244556667778888888888888766665554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.07 E-value=10 Score=27.74 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655543 22222223445677899999999999999999999877644 577888888888888887
Q ss_pred CCCCCCHHHHHH
Q 007288 409 SGVRPDRIVFMA 420 (609)
Q Consensus 409 ~g~~p~~~~~~~ 420 (609)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.43 E-value=9 Score=31.43 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----CCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH-HHH
Q 007288 354 ALIDMYAKCGNISDSQKIFSEMS-----DRDL-------VTWTSMMIGYGAHGHGKEAIELFDEMVKSG-VRPDRI-VFM 419 (609)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-~~~ 419 (609)
.-+..+...|.++.|+-+.+.+. .+++ .++..+.+++...|++.+|...|++.++.. .-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34555666777777766665543 1332 134445566666777777777776654311 111111 110
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFK 479 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
.+. ....... ......+.+.--.+..+|.+.|++++|+.+++.++.+
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 000 0000000 0112223344445667777788888888888777543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.42 E-value=11 Score=27.61 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007288 329 ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVK 408 (609)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (609)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665543 22222223445677899999999999999999999877744 567888888888878877
Q ss_pred CCCCCCHHHHHH
Q 007288 409 SGVRPDRIVFMA 420 (609)
Q Consensus 409 ~g~~p~~~~~~~ 420 (609)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 455555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=8.2 Score=37.31 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-----hhcCCCCChhHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-----NDYNVNPNKEIY 453 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~ 453 (609)
.++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|++.|+.+ .+.|+.|+..+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3455556667777777666666653 1335556777777777777777777666665 234666665543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.96 E-value=30 Score=32.21 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 007288 351 LANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELF----DEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++. +-..+.++++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666788899999998876442 33455667776665554 44455778888888888887776
Q ss_pred ccCCHH-HHHHHHHHh----hhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChH
Q 007288 427 HAGLVD-EGLKYFKSM----NDYN--VNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPN 499 (609)
Q Consensus 427 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 499 (609)
....-+ .=..+.+++ .+.| ..-|+.....+...|.+.+++.+|...|- .+..+....+..++--+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~--- 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD--- 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS---
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc---
Confidence 654311 112233333 2222 33467777888999999999999998884 344444456655553333332
Q ss_pred HHHHHHHHHhccCCCCcchHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 007288 500 LGKLAALRVLDLKPNMMGTYI-ILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 500 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.|.....|. ..+--|...++...|..+++...+
T Consensus 182 ------------~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ------------ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 232333333 355567778899999998877765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.71 E-value=24 Score=39.72 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------------------
Q 007288 319 SIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDR-------------------- 378 (609)
Q Consensus 319 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 378 (609)
.++..+...+..+.+.++... ++.+....-.+..+|..+|++++|...|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 355556666776666554432 2334444455678888999999999999887520
Q ss_pred ------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 007288 379 ------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDR----IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNP 448 (609)
Q Consensus 379 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
-..-|..++..|-+.+.++.++++-+..++..-.-+. ..|..+++++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0013667778888889999998888877764222122 2577888899999999999888877754333
Q ss_pred ChhHHHHHHHHHhhcCCHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEA 469 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A 469 (609)
-......|+..++..|+.+.-
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 356677788777777765543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.03 E-value=11 Score=27.89 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVD 458 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 458 (609)
+.-+..+-++.+....+.|+.......+++|.+.+++..|.++|+.. .+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 44456666677777778899999999999999999999999999888 3433 33556776664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.94 E-value=8.2 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=27.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhhc-CCCCC-------hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 007288 422 LTACSHAGLVDEGLKYFKSMNDY-NVNPN-------KEIYGCVVDLLGRAGRVKEAYELIKS 475 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
++.+...+.++.|+-+.+.+... +..|+ ..++..+.+++...|++.+|...|++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44455555666665555554111 11222 12344455666666666666666655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.81 E-value=15 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=13.4
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCc
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMM 516 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 516 (609)
-++.+.|+++.|....+.+++.+|+|.
T Consensus 86 vg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 444455555555555555555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.13 E-value=11 Score=27.89 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=43.2
Q ss_pred HHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007288 297 ECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALID 357 (609)
Q Consensus 297 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (609)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++.+- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455556666667788888888888899988888888888888777543 222455666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 609 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 24/187 (12%), Positives = 60/187 (32%), Gaps = 7/187 (3%)
Query: 353 NALIDMYAKCGNISDSQKIFS---EMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKS 409
+ L ++ G I + F + L + ++ A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 410 GVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEA 469
+ + GL+D + ++ + + + Y + + L G V EA
Sbjct: 233 SPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEA 290
Query: 470 YELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAAL--RVLDLKPNMMGTYIILSNIYA 527
+ + A + N+ + L + L++ P + L+++
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 528 AEGKWEE 534
+GK +E
Sbjct: 351 QQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.91 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.41 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.32 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.28 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.11 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.92 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.6 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.22 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.53 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.08 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.57 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.9e-20 Score=181.13 Aligned_cols=347 Identities=8% Similarity=0.018 Sum_probs=230.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007288 179 DVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDM 258 (609)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 258 (609)
...+..+...+.+.|++++|+..|++..+... -+..++..+...+...|++++|...+....+.. +.+..........
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 110 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccccccc
Confidence 34445555555555555555555555544321 134445555555555555555555555555543 2223333333333
Q ss_pred HHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHH
Q 007288 259 YCRFDCLSDANQYFDEM---TEKDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQ 334 (609)
Q Consensus 259 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 334 (609)
....+....+....... ..................+ ...+...+....... +-+...+..+...+...|+.+.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T d1w3ba_ 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHH
Confidence 33333333333222222 1122233333333444444 555555555554432 224455666667777788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007288 335 QVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGV 411 (609)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (609)
..+....+.. +.+...+..+..++...|++++|...++.... .+...+..+...+...|++++|+..|++..+..
T Consensus 190 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 267 (388)
T d1w3ba_ 190 HHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 8888777654 34566777788888888888888888877653 455677778888888999999999999888742
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHH
Q 007288 412 RPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLL 489 (609)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 489 (609)
+-+..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|++.+++. ...|+ ..++..+.
T Consensus 268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388)
T d1w3ba_ 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2245678888888999999999999998886544 456778888888999999999999999886 55664 55677788
Q ss_pred HHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 490 GACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
.++.+.|++++|...++++++++|+++.+|..++.+|.+.||
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999888899999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.7e-19 Score=177.82 Aligned_cols=356 Identities=10% Similarity=0.042 Sum_probs=289.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007288 185 LITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDC 264 (609)
Q Consensus 185 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 264 (609)
+...+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4456778899999999999998763 2356778888889999999999999999999875 5567899999999999999
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHH
Q 007288 265 LSDANQYFDEMTE---KDLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGI 340 (609)
Q Consensus 265 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 340 (609)
+++|...+....+ .+...+........... ...+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 9999999988764 23344444444444445 555555555544432 233444445555666777888888888777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007288 341 VRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIV 417 (609)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (609)
.... +.+...+..+...+...|++++|...++...+ | +...|..+...+...|++++|+..+++....+ ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7654 44567778888999999999999999988763 3 55688889999999999999999999998864 445678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhC
Q 007288 418 FMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEH 495 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 495 (609)
+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|++.++.. ....+...+..+...+...
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 8888999999999999999999997754 235778889999999999999999999887 2334677888888999999
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 496 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
|++++|+..+++++++.|+++.++..++.+|.+.|++++|+..+++..+..
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998743
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=7.3e-13 Score=126.27 Aligned_cols=222 Identities=12% Similarity=0.089 Sum_probs=157.0
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHH
Q 007288 321 IAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHGHGK 397 (609)
Q Consensus 321 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 397 (609)
...+.+.|++++|...|+.+.+.. +.+...+..+..+|...|++++|...|++..+ | +...|..+..+|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 334455666666666666665543 23455556666666666666666666665542 2 3455666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHH
Q 007288 398 EAIELFDEMVKSGVRPDR----------------IVFMAVLTACSHAGLVDEGLKYFKSMNDYNV-NPNKEIYGCVVDLL 460 (609)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 460 (609)
+|.+.+++.... .|+. ......+..+...+.+.+|...+....+... ..+..++..+...+
T Consensus 105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 105 QACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 776666666552 1211 0111122334445667888888888755432 34567788889999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007288 461 GRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKF 538 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (609)
...|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.+|.+.|++++|+..
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999887 3344 4677888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 007288 539 RKIMRGM 545 (609)
Q Consensus 539 ~~~m~~~ 545 (609)
|++..+.
T Consensus 263 ~~~al~l 269 (323)
T d1fcha_ 263 FLEALNM 269 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998873
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.9e-12 Score=122.06 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=160.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccH
Q 007288 255 ILDMYCRFDCLSDANQYFDEMTE--K-DLITWNTIIAGYEKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAAL 330 (609)
Q Consensus 255 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 330 (609)
....+.+.|++++|...|+++.+ | +..+|..+...+...| +++|...|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 34455566666666666665532 1 3344555555555555 555555555554421 11233444444445555555
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007288 331 SCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSG 410 (609)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (609)
+.|...+..+..... +............ ...+.......+..+...+.+.+|.+.+.+..+..
T Consensus 104 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTP--AYAHLVTPAEEGA---------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTST--TTGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhcc--chHHHHHhhhhhh---------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 555555554443221 1000000000000 00011111112233445567788899988887632
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHH
Q 007288 411 -VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGP 487 (609)
Q Consensus 411 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 487 (609)
-.++...+..+...+...|++++|+..++....... -+...|..+...|.+.|++++|++.+++. ...| +...|..
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 245 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 245 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence 234567888888899999999999999999976542 35778889999999999999999999887 4455 4667888
Q ss_pred HHHHHHhCCChHHHHHHHHHHhccCCCCcch-----------HHHHHHHHHhcCChHHHH
Q 007288 488 LLGACKEHRLPNLGKLAALRVLDLKPNMMGT-----------YIILSNIYAAEGKWEEFA 536 (609)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~ 536 (609)
+..+|.+.|++++|+..+++++++.|++... +..+..++...|+.+.+.
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999988866553 344566666666665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.4e-08 Score=95.35 Aligned_cols=229 Identities=8% Similarity=-0.032 Sum_probs=151.5
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGL--D---GNLALANALIDMYAKCGNISDSQKIFSEMSD-------RD---- 379 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~---- 379 (609)
.+..+...+...|++++|...+....+... . .....+..+...+...|++..+...+..... +.
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 344455556666677777666666543211 0 1123344556667777777777776665431 11
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCC----C
Q 007288 380 LVTWTSMMIGYGAHGHGKEAIELFDEMVKSG----VRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDY--NVNP----N 449 (609)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~ 449 (609)
...+..+...+...|+++.+...+....... ......++......+...+++..+...+...... .... .
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 1245556677888889999988888877632 2223345666667777888888888887766221 1111 1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHhhHHHHHHHHHhCCChHHHHHHHHHHhc------cCCCCcc
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-----DESVWGPLLGACKEHRLPNLGKLAALRVLD------LKPNMMG 517 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~ 517 (609)
...+..+...+...|++++|...+++. ...| ....+..+..++...|++++|...+++++. ..|....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 234556677788899999999998877 2222 233455567888999999999999998864 3455566
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 518 TYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.+..++.+|...|++++|.+.+++..+
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999999999988765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.2e-08 Score=95.68 Aligned_cols=210 Identities=12% Similarity=0.158 Sum_probs=148.0
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007288 316 TFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG-NISDSQKIFSEMSD---RDLVTWTSMMIGYG 391 (609)
Q Consensus 316 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 391 (609)
.|+.+-..+.+.+..++|..+++.+++.. +-+...|+....++...| ++++|...++...+ .+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 34444455556667777777777777664 345556666777777765 47888888877752 35678888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC------
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR------ 465 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 465 (609)
..|++++|++.++++.+.. +-+...|..+...+.+.|++++|+..++.+.+.+. -+...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhhh
Confidence 8899999999999988842 33567888888889999999999999999977653 256677777666666555
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC--cchHHHHHHHHHhc
Q 007288 466 VKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM--MGTYIILSNIYAAE 529 (609)
Q Consensus 466 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~ 529 (609)
+++|++.+.+. ...| +...|..+...+.. ...+++...++.+.++.|.. ...+..++..|...
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 57788777765 4455 45667666665554 44678888888888888743 33455677776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.2e-07 Score=90.28 Aligned_cols=89 Identities=11% Similarity=-0.093 Sum_probs=51.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCchhHHHHHHHHHHhCCC-C----ChhHHHHHH
Q 007288 186 ITGYAHSGNGYGGLGVFKEMLLEGVEMN----PYSFSIAVRACASTGWVSFGKLIHAAVIKHGFG-S----NLPVMNSIL 256 (609)
Q Consensus 186 i~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~----~~~~~~~l~ 256 (609)
...+...|++++|++++++........+ ...+..+...+...|++++|...++...+.... + ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3455667788888888877766422111 124455556666777777777777766553211 1 122344455
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 007288 257 DMYCRFDCLSDANQYFDE 274 (609)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~ 274 (609)
..+...|++..+...+..
T Consensus 99 ~~~~~~~~~~~a~~~~~~ 116 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEK 116 (366)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=3.8e-09 Score=96.31 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD---RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRP-DRIVFMAVLTACSHAGL 430 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~ 430 (609)
+..+|.+.|++++|...|++..+ .+..+|+.+..+|...|++++|++.|+++.+. .| +..++..+...+...|+
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhh
Confidence 34444444444444444444431 23344444445555555555555555554442 22 22344444444445555
Q ss_pred HHHHHHHHHHhhh
Q 007288 431 VDEGLKYFKSMND 443 (609)
Q Consensus 431 ~~~a~~~~~~~~~ 443 (609)
+++|...|+...+
T Consensus 121 ~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=9.3e-09 Score=96.37 Aligned_cols=195 Identities=8% Similarity=0.100 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcchHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007288 350 ALANALIDMYAKCGNISDSQKIFSEMSD--R-DLVTWTSMMIGYGAHG-HGKEAIELFDEMVKSGVRPDRIVFMAVLTAC 425 (609)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 425 (609)
..++.+..++.+.+..++|+.+++.+.+ | +...|+....++...| ++++|+..+++..+.. +-+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 4556667778889999999999999984 4 5567888888888876 5999999999998852 23466999999999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCC------
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRL------ 497 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~------ 497 (609)
...|++++|+..++.+.+... -+...|..+...+.+.|++++|++.++++ ...| +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 999999999999999987653 37889999999999999999999999988 4555 56678777666665554
Q ss_pred hHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 498 PNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
+++|+..+.++++++|++...|..++.++...| .+++...++...+...
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTT
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCC
Confidence 678999999999999999999999988877655 5788888888876433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=8.2e-08 Score=89.64 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=125.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-cchHHHHHHHHHhcCCHHHHHHHH
Q 007288 328 AALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSD--R-D-LVTWTSMMIGYGAHGHGKEAIELF 403 (609)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~ 403 (609)
+..+.+..++++..+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34567777777777655555666777777777788888888888877653 2 2 235777777777788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 007288 404 DEMVKSGVRPDRIVFMAVLT-ACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM----PF 478 (609)
Q Consensus 404 ~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 478 (609)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|..+++.+.+.|+++.|..+|++. +.
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 887775422 2233333222 2334577788888888875542 335677777788888888888888888775 33
Q ss_pred CCC--HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 479 KPD--ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 479 ~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
.|+ ...|...+..-...|+.+.+..+++++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 332 3467777777777788888888888777776643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.7e-08 Score=90.47 Aligned_cols=220 Identities=7% Similarity=-0.090 Sum_probs=145.1
Q ss_pred hHHHHHHHHhHHCCC-CC--CHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 296 SECLNMFSKMKSERF-SP--NCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 296 ~~a~~~~~~m~~~~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
+.++.-+.+...... .+ ...+|..+...+.+.|+++.|...|++..+.. +.+..++..+..+|.+.|++++|...|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 445555556554321 11 22356667778888999999999999988875 456788899999999999999999999
Q ss_pred HhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 373 SEMSD--R-DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 373 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
+++.+ | +..++..+..+|...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+........ ++
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 171 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KE 171 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CC
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hh
Confidence 98873 3 45688889999999999999999999998853 2234444444445555555555555555554422 22
Q ss_pred hhHHHHHHHHHhhcCC----HHHHHHHHHhC-CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHH
Q 007288 450 KEIYGCVVDLLGRAGR----VKEAYELIKSM-PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYI 520 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 520 (609)
...++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|.
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222 2233222222 22222222111 11222 345666778899999999999999999999997765544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.1e-07 Score=88.65 Aligned_cols=182 Identities=8% Similarity=0.035 Sum_probs=142.5
Q ss_pred CCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007288 363 GNISDSQKIFSEMSD----RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF 438 (609)
Q Consensus 363 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
+..++|..+|++..+ .+...|...+..+...|++++|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887653 3445788888888999999999999999997543333557889999999999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHH-HhhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 439 KSMNDYNVNPNKEIYGCVVDL-LGRAGRVKEAYELIKSM-P-FKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
+++.+.+. .+...|...... +...|+.+.|..+|+.+ . ...+...|...+..+.+.|+.+.|..+|++++...|.+
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99976553 344445444433 34568999999999988 2 22356789999999999999999999999999977644
Q ss_pred c----chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007288 516 M----GTYIILSNIYAAEGKWEEFAKFRKIMRGM 545 (609)
Q Consensus 516 ~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 545 (609)
+ ..|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 36777777777889999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=3e-08 Score=94.02 Aligned_cols=227 Identities=6% Similarity=-0.105 Sum_probs=154.0
Q ss_pred chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007288 295 SSECLNMFSKMKSERFSPNCFTFTSIIAACATLA--ALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIF 372 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 372 (609)
.++|+..++...+.. +-+...+..+..++...+ +.+.+...+..+...........+......+...|.+++|...+
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 167 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence 455666666665532 223444455555554444 46777777777777643322223344556777789999999999
Q ss_pred HhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 007288 373 SEMSDR---DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPN 449 (609)
Q Consensus 373 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 449 (609)
+.+.+. +...|+.+...+...|++++|...++...+. .|+. ..+...+...+..+++...+....... +++
T Consensus 168 ~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~ 241 (334)
T d1dcea1 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEP 241 (334)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cch
Confidence 988853 5567888888898999888876665544432 2222 223333455666677777777775544 334
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 450 KEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
...+..+...+...|+.++|...+.+. ...| +...|..+..++...|++++|...++++++++|.+...|..|...+.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 555666777888889999999988876 5555 34566777788999999999999999999999988888888877765
Q ss_pred h
Q 007288 528 A 528 (609)
Q Consensus 528 ~ 528 (609)
-
T Consensus 322 ~ 322 (334)
T d1dcea1 322 L 322 (334)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=3.4e-09 Score=100.74 Aligned_cols=243 Identities=7% Similarity=-0.032 Sum_probs=173.8
Q ss_pred chHHHHHHHHhHHCCCCCCHHh-HHH---HHHH-------HHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007288 295 SSECLNMFSKMKSERFSPNCFT-FTS---IIAA-------CATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCG 363 (609)
Q Consensus 295 ~~~a~~~~~~m~~~~~~p~~~t-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (609)
.++|++++.+..+. .|+..+ |+. ++.. +...|++++|..+++...+.. +.+...+..+..++...+
T Consensus 45 ~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 57888888888763 465543 221 2222 234566888999999888765 445666666766666655
Q ss_pred --CHHHHHHHHHhcCC---CCcchHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007288 364 --NISDSQKIFSEMSD---RDLVTWT-SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKY 437 (609)
Q Consensus 364 --~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 437 (609)
++++|...++.+.+ ++...+. .....+...+.+++|+..++++.+.. +-+...|..+...+...|++++|...
T Consensus 122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 48899999888763 3445554 34467777899999999999888753 23566888888888899988877666
Q ss_pred HHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCC
Q 007288 438 FKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM--PFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNM 515 (609)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 515 (609)
++...+.. |+. ..+...+...+..+++...+... ...++...+..+...+...++.++|...+.+..+.+|.+
T Consensus 201 ~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 275 (334)
T d1dcea1 201 GRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC 275 (334)
T ss_dssp CSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH
Confidence 65543321 111 12233445566666777666655 223345566667777888899999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 516 MGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
..++..++.+|.+.|++++|+..+++..+.+
T Consensus 276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 276 LLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999998843
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.3e-07 Score=82.00 Aligned_cols=101 Identities=9% Similarity=-0.116 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHH
Q 007288 413 PDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLG 490 (609)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 490 (609)
|+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. .+.|+ ...|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 444445555555555555555555555554433 224444555555555555555555555544 33342 334444555
Q ss_pred HHHhCCChHHHHHHHHHHhccCCC
Q 007288 491 ACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 491 ~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
++...|++++|+..+++++++.|+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 555555555555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.5e-06 Score=74.20 Aligned_cols=141 Identities=13% Similarity=-0.035 Sum_probs=95.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007288 356 IDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGL 435 (609)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 435 (609)
...+...|+++.|++.|..+..++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3446778888888888888888888888888888888888888888888888743 234557888888888888888888
Q ss_pred HHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCC
Q 007288 436 KYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPN 514 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 514 (609)
..|++...... .+... .+...|. ...++ ..++..+..++.+.|++++|.+.+++++++.|.
T Consensus 91 ~~~~kAl~~~~-~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLR-GNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTT-TCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCc-cCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88887754321 11000 0000000 00111 234455667788888888888888888888874
Q ss_pred C
Q 007288 515 M 515 (609)
Q Consensus 515 ~ 515 (609)
.
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.4e-07 Score=72.06 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=62.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 007288 456 VVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWE 533 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 533 (609)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 345566667777777777666 3333 45556666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhC
Q 007288 534 EFAKFRKIMRGM 545 (609)
Q Consensus 534 ~A~~~~~~m~~~ 545 (609)
+|+..+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=7.4e-07 Score=69.15 Aligned_cols=106 Identities=17% Similarity=0.074 Sum_probs=87.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP 498 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 498 (609)
-...+.+.|++++|+.+|+...+.. +-+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3456778899999999999987755 346778888899999999999999998887 3333 677888888999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
++|+..++++++++|+++..+..+.++-.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999988888877776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=6.7e-07 Score=82.42 Aligned_cols=189 Identities=9% Similarity=0.035 Sum_probs=124.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHH
Q 007288 355 LIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYGAHGHGKEAIELFDEMVKS----GVR-PDRIVFMA 420 (609)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ 420 (609)
..++|...|++++|...|.+..+ .+ ..+|..+..+|.+.|++++|++.+++..+. |-. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34567777777777777766542 11 246778888888889999998888876642 111 11235666
Q ss_pred HHHHHh-ccCCHHHHHHHHHHhhhc----CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------hhH
Q 007288 421 VLTACS-HAGLVDEGLKYFKSMNDY----NVNP-NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDE--------SVW 485 (609)
Q Consensus 421 ll~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~ 485 (609)
+...|. ..|++++|++.+++..+. +.++ -..++..+...+...|++++|++.++++ ...|+. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 469999999999887432 2111 1345778889999999999999999886 111111 123
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHHHH
Q 007288 486 GPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-----TYIILSNIYAA--EGKWEEFAKFRKIMR 543 (609)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m~ 543 (609)
...+..+...++++.|...+++..+++|.... ....++.++.. .+.+++|+..|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34445677889999999999999999884332 34556666665 356888888886544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.9e-06 Score=73.57 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=71.7
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 502 (609)
+...|++++|++.|.++ .+|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++|.
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 34455555555555443 1234445555555555555555555555554 2223 3445555555566666666666
Q ss_pred HHHHHHhccCCCC----------------cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 503 LAALRVLDLKPNM----------------MGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 503 ~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
..+++++...|.+ ..++..++.+|.+.|++++|.+.+++..+..+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6666655443322 24567899999999999999999999887544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=3e-06 Score=77.90 Aligned_cols=163 Identities=9% Similarity=-0.042 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHH-hcCCHHHHHHHHHHHHH----CCCCCC-H
Q 007288 351 LANALIDMYAKCGNISDSQKIFSEMSD-----RD----LVTWTSMMIGYG-AHGHGKEAIELFDEMVK----SGVRPD-R 415 (609)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~-~~g~~~~A~~~~~~m~~----~g~~p~-~ 415 (609)
+|..+..+|.+.|++++|...++...+ .+ ..++..+...|- ..|++++|++.+++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344444555555555555555544331 01 233444555553 35788888888777654 121111 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC------H
Q 007288 416 IVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNK------EIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD------E 482 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~ 482 (609)
.++..+...+...|++++|+..|+++......... ..+...+..+...|+++.|...+++. .+.|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 35677778888888888888888887543322111 12334455666778888888888877 33332 2
Q ss_pred hhHHHHHHHHHhC--CChHHHHHHHHHHhccCC
Q 007288 483 SVWGPLLGACKEH--RLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 483 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p 513 (609)
.....++.++... +.+++|+..|..+.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 2345555665542 346777777766666655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.2e-06 Score=72.30 Aligned_cols=117 Identities=10% Similarity=-0.035 Sum_probs=94.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCCh
Q 007288 421 VLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLP 498 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 498 (609)
....|.+.|++++|+..|++..+.+ +-+...|..+..+|...|++++|++.|++. ...| +...|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456778999999999999997766 346788888999999999999999999887 4455 457888888999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHH--HhcCChHHHHHH
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIY--AAEGKWEEFAKF 538 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 538 (609)
++|...+++++.+.|++...+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998888877776554 334456666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=4.3e-07 Score=78.55 Aligned_cols=97 Identities=5% Similarity=-0.103 Sum_probs=77.1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHH
Q 007288 378 RDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVV 457 (609)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
|+...+......|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|+...+... -+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence 455556667788889999999999998888753 33556788888889999999999999998876442 2567788888
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 007288 458 DLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~ 476 (609)
.+|.+.|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 9999999999999888876
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=2.6e-07 Score=71.16 Aligned_cols=89 Identities=15% Similarity=0.033 Sum_probs=79.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 007288 455 CVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKW 532 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 532 (609)
.+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++++|++...+..++..|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4567788999999999999987 4455 5778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 007288 533 EEFAKFRKIMR 543 (609)
Q Consensus 533 ~~A~~~~~~m~ 543 (609)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998863
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=8.8e-07 Score=73.21 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 007288 454 GCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGK 531 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 531 (609)
......|.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|.+..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34467788999999999999988 4445 567888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 007288 532 WEEFAKFRKIMRGMGS 547 (609)
Q Consensus 532 ~~~A~~~~~~m~~~~~ 547 (609)
+++|...+++..+..+
T Consensus 94 ~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 94 FRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.5e-06 Score=67.59 Aligned_cols=106 Identities=15% Similarity=-0.051 Sum_probs=79.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---hhHHHHHHH
Q 007288 419 MAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV---KEAYELIKSM-PFKPDE---SVWGPLLGA 491 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~~~ 491 (609)
..++..+...+++++|.+.|+...+.+ +.+..++..+..++.+.++. ++|+.+++++ ...|+. .+|..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356777788888899999999887765 34677777888888776554 4688888886 334433 356677888
Q ss_pred HHhCCChHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007288 492 CKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNI 525 (609)
Q Consensus 492 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 525 (609)
|.+.|++++|+..++++++++|++..+...+..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 9999999999999999999999877665554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=7.8e-06 Score=68.03 Aligned_cols=85 Identities=13% Similarity=-0.081 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
.+|+.+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++.....+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999887 4455 677888888999999999999999999999999999999888888777
Q ss_pred cCChHHH
Q 007288 529 EGKWEEF 535 (609)
Q Consensus 529 ~g~~~~A 535 (609)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=7.8e-06 Score=68.01 Aligned_cols=65 Identities=9% Similarity=-0.128 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.+|..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 35666778899999999999999999999999999999999999999999999999999988543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.00033 Score=62.70 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=141.1
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CcchHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAK----CGNISDSQKIFSEMSDR-DLVTWTSMMIG 389 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~ 389 (609)
..+..+...+...++.++|.+.|++..+.| +...+..|..+|.. ..+...|...+....++ +......+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~ 79 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence 344444455556667777777777666655 33344445555554 45677777777666543 33344444444
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 390 YGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS----HAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 390 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..|...|.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 153 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhc
Confidence 432 46778888888888776532 22222222222 2445667777777665533 5566666776666
Q ss_pred h----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----c
Q 007288 462 R----AGRVKEAYELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA----E 529 (609)
Q Consensus 462 ~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 529 (609)
. ..+...+...++......+......|...+.. ..+++.|...|+++.+.+. +..+..|+.+|.. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSS
T ss_pred cCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHHHHHHHHHHHcCCCCc
Confidence 4 45667777777766323456666666656654 5689999999999988764 6788899999986 4
Q ss_pred CChHHHHHHHHHHHhCCCc
Q 007288 530 GKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 530 g~~~~A~~~~~~m~~~~~~ 548 (609)
.++++|.++|++..+.|..
T Consensus 232 ~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHCcCH
Confidence 4899999999999887764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.09 E-value=3.3e-05 Score=62.78 Aligned_cols=64 Identities=16% Similarity=-0.038 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..|++..+.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566778889999999999999999999999999999999999999999999999999988743
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=2e-05 Score=65.38 Aligned_cols=86 Identities=5% Similarity=-0.095 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007288 449 NKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIY 526 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 526 (609)
....|..+..++.+.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|++...+..+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445667778888888888888888777 5555 4567777888888888888888888888888888887777777766
Q ss_pred HhcCChHH
Q 007288 527 AAEGKWEE 534 (609)
Q Consensus 527 ~~~g~~~~ 534 (609)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.4e-05 Score=62.76 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=74.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcc-------hHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMG-------TYIILS 523 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 523 (609)
+..+...+.+.|++++|++.|++. ...| +...+..+..+|.+.|++++|+..++++++++|++.. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888888899998888777 3344 5677888888999999999999999999998886654 556677
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 007288 524 NIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..+...+++++|+..+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788888999999999988765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=4.8e-05 Score=63.03 Aligned_cols=66 Identities=8% Similarity=-0.076 Sum_probs=60.2
Q ss_pred CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 481 DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
....|..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|+..|++..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344667777889999999999999999999999999999999999999999999999999998843
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.91 E-value=7.1e-05 Score=60.71 Aligned_cols=126 Identities=10% Similarity=-0.095 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHh
Q 007288 382 TWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLG 461 (609)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
.+......+.+.|++.+|+..|.+.+..- |.. ....-......... ....+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~-------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN-------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence 34455666777888888888887777521 100 00000000000000 11246777888999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007288 462 RAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYA 527 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 527 (609)
+.|++++|++.+++. ...| +..+|..+..++...|++++|+..++++++++|++..+...+..+..
T Consensus 79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999887 4445 67889999999999999999999999999999998887777666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=3.1e-05 Score=59.86 Aligned_cols=101 Identities=6% Similarity=0.010 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHH
Q 007288 385 SMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAG---LVDEGLKYFKSMNDYNVNPN-KEIYGCVVDLL 460 (609)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 460 (609)
.++..+...+++++|.+.|++....+ +.+..++..+..++.+.+ ++++|+.+++++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666777777777777777643 334556666666666544 34457777777655443333 23556677777
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHhhHH
Q 007288 461 GRAGRVKEAYELIKSM-PFKPDESVWG 486 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~-~~~p~~~~~~ 486 (609)
.+.|++++|++.|+++ .+.|+.....
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~ 109 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQAK 109 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence 7777777777777776 4556544333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=0.00014 Score=59.96 Aligned_cols=93 Identities=11% Similarity=-0.086 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM-PFKP-DESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
.+|+.+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++......+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34666778889999999999999887 3334 677888888999999999999999999999999998888888888777
Q ss_pred cCChHH-HHHHHHHHH
Q 007288 529 EGKWEE-FAKFRKIMR 543 (609)
Q Consensus 529 ~g~~~~-A~~~~~~m~ 543 (609)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665543 445555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=6.5e-05 Score=62.07 Aligned_cols=64 Identities=8% Similarity=-0.117 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGS 547 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 547 (609)
.|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|+..|++..+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555677889999999999999999999999999999999999999999999999999987543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=4.9e-05 Score=63.32 Aligned_cols=120 Identities=8% Similarity=-0.072 Sum_probs=83.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHhhHHHHHHHHHhCCCh
Q 007288 420 AVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRV-KEAYELIKSMPFKPDESVWGPLLGACKEHRLP 498 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 498 (609)
.........|++++|.+.|.......-.+ .. ..+. .+.+ .....-++. -....+..+..++...|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l------~~~~-~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGP-VL------DDLR-DFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT------GGGT-TSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc------ccCc-chHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 34456677888888888888885532111 00 0000 0111 111111111 1234667788999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcccC
Q 007288 499 NLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRG-----MGSKKEV 551 (609)
Q Consensus 499 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 551 (609)
++|...++++++.+|.+...|..++.+|...|++.+|++.|+++.+ .|+.|.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999854 4776554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0054 Score=55.92 Aligned_cols=266 Identities=11% Similarity=0.105 Sum_probs=126.0
Q ss_pred HHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHH
Q 007288 157 YATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLI 236 (609)
Q Consensus 157 ~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 236 (609)
|.+.| .++.|..+|..+. .|..++..+.+.++++.|.+++.+. -+..+|..+...|........+
T Consensus 24 c~~~~-lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la--- 88 (336)
T d1b89a_ 24 CYDEK-MYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA--- 88 (336)
T ss_dssp ------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH---
T ss_pred HHHCC-CHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH---
Confidence 33444 4444444444332 3555556666666666666665443 1445666666666555444332
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCCC
Q 007288 237 HAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMT---EKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSPN 313 (609)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p~ 313 (609)
.+.......++.....++..|-..|.+++...+++... ..+...++.++..|++.+.++..+.++..- +
T Consensus 89 --~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s------~ 160 (336)
T d1b89a_ 89 --QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW------S 160 (336)
T ss_dssp --HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS------T
T ss_pred --HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhcc------c
Confidence 11122233344445566677777777777777776543 234556667777777666444444443321 1
Q ss_pred HHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007288 314 CFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMSDRDLVTWTSMMIGYGAH 393 (609)
Q Consensus 314 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 393 (609)
......++..|...+-+ .-++..|.+.|++++|..+.-.-. ++..-....+..+.+.
T Consensus 161 ~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 161 RVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKV 217 (336)
T ss_dssp TSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHcc
Confidence 11122333444333333 234445555666665554432211 1222233445555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH-------------HHhhhcCCCCChhHHHHHHHHH
Q 007288 394 GHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYF-------------KSMNDYNVNPNKEIYGCVVDLL 460 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
.+.+...++.....+. .|+ ..+.++......-+..+..+.+ +.....| +..+.+++.+.|
T Consensus 218 ~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~ly 290 (336)
T d1b89a_ 218 ANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLF 290 (336)
T ss_dssp SSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHH
Confidence 6666555555554442 232 2234444444444444444333 3322222 234555666666
Q ss_pred hhcCCHHHHHHHHHh
Q 007288 461 GRAGRVKEAYELIKS 475 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~ 475 (609)
...++++.-....+.
T Consensus 291 ie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 291 ITEEDYQALRTSIDA 305 (336)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred hCcchhHHHHHHHHH
Confidence 666665544444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2.5e-06 Score=84.95 Aligned_cols=109 Identities=9% Similarity=-0.040 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHh
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPD-ESVWGPLLGACKE 494 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 494 (609)
.+..+...+.+.|+.++|...++...... ...++..+.+.+...|++++|+..|++. ...|+ ...|+.|...+..
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 44445555555556555555554443211 1234445555666666666666666555 33343 3455555566666
Q ss_pred CCChHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007288 495 HRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA 528 (609)
Q Consensus 495 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 528 (609)
.|+..+|...|.+++..+|+.+.++..|+.++.+
T Consensus 199 ~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 6666666666666666655555555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.77 E-value=9.3e-05 Score=56.22 Aligned_cols=91 Identities=7% Similarity=-0.143 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007288 182 WTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCR 261 (609)
Q Consensus 182 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 261 (609)
+-.+...+.+.|++++|+..|++....... +...|..+..++...|++++|...++..++.. +.+..++..+..+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 344566778889999999999998876432 57788888888889999999999999888875 5677888888889999
Q ss_pred cCCHHHHHHHHHh
Q 007288 262 FDCLSDANQYFDE 274 (609)
Q Consensus 262 ~g~~~~A~~~~~~ 274 (609)
.|++++|.+.|++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999888876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.73 E-value=0.01 Score=52.46 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=44.0
Q ss_pred CHHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHH
Q 007288 364 NISDSQKIFSEMSD-RDLVTWTSMMIGYGA----HGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSH----AGLVDEG 434 (609)
Q Consensus 364 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a 434 (609)
+...+...++...+ .+......+...|.. ..++++|+..|++..+.| +...+..|...|.. ..+.++|
T Consensus 161 ~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 161 DLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred ccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHH
Confidence 44444444444432 244444445444443 456777777777777765 34444555555543 3366677
Q ss_pred HHHHHHhhhcC
Q 007288 435 LKYFKSMNDYN 445 (609)
Q Consensus 435 ~~~~~~~~~~~ 445 (609)
.++|++..+.|
T Consensus 238 ~~~~~kAa~~g 248 (265)
T d1ouva_ 238 IENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCc
Confidence 77777776655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.019 Score=52.19 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=116.6
Q ss_pred CHhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007288 213 NPYSFSIAVRACASTGWVSFGKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEK 292 (609)
Q Consensus 213 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 292 (609)
|..-...+..-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+.. +..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 33333444455555566666655554322 13445555666666666666655442 44556666666655
Q ss_pred CC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007288 293 SG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKI 371 (609)
Q Consensus 293 ~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (609)
.. ..-+ .+.......+......++..+...|..+....++...... -..+...++-++.+|++.+. ++..+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 54 2221 1112223334445556666666677777766666655432 24455566667777766543 333344
Q ss_pred HHhcCC-C----------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007288 372 FSEMSD-R----------DLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKS 440 (609)
Q Consensus 372 ~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
+..... - ....|..++..|.+.|+++.|..++- +. .++..-....+..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 433221 0 11234555556666666666654432 21 23333344455566677777666666555
Q ss_pred hhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 441 MNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
..+. ++...+.++......-+..+..+.+++-
T Consensus 230 yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 230 YLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHc----CHHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 5442 2234456666666666666666666655
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0003 Score=54.79 Aligned_cols=90 Identities=9% Similarity=0.018 Sum_probs=41.1
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC---CC-----HhhHHHHHHHHH
Q 007288 423 TACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFK---PD-----ESVWGPLLGACK 493 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~-----~~~~~~l~~~~~ 493 (609)
..+...|++++|+..|++..+.+. .+...+..+..+|.+.|++++|++.++++ .+. +. ..+|..+...+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433321 13344444444444444444444444443 000 11 123344445555
Q ss_pred hCCChHHHHHHHHHHhccCC
Q 007288 494 EHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 494 ~~~~~~~a~~~~~~~~~~~p 513 (609)
..+++++|+..+++.+...|
T Consensus 91 ~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HhCCHHHHHHHHHHHHhcCC
Confidence 66666666666666665555
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.62 E-value=0.00012 Score=59.64 Aligned_cols=62 Identities=13% Similarity=-0.093 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhccCCC-----------CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 483 SVWGPLLGACKEHRLPNLGKLAALRVLDLKPN-----------MMGTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
..|+.+..++...|++++|...+++++++.|. ....+..++.+|...|++++|+..|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888887765331 123678899999999999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=5.7e-05 Score=60.54 Aligned_cols=128 Identities=12% Similarity=0.032 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHA----------GLVDEGLKYFKSMNDYNVNPNKEIYGCVVDL 459 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
|-+.+.+++|...|+...+.. +-+..++..+..+|... +.+++|+..|++..+.+. -+...|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHH
Confidence 344556777777777777642 22344555565555533 334556666666655432 234455555555
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007288 460 LGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFR 539 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (609)
|...|++. ++... ..++++.|...|+++++++|++...+..|... ..|.+++
T Consensus 85 y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~ 136 (145)
T d1zu2a1 85 YTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLH 136 (145)
T ss_dssp HHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHH
T ss_pred HHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHH
Confidence 54433210 11111 11246889999999999999877666656555 4556666
Q ss_pred HHHHhCCC
Q 007288 540 KIMRGMGS 547 (609)
Q Consensus 540 ~~m~~~~~ 547 (609)
.+..++|+
T Consensus 137 ~e~~k~~~ 144 (145)
T d1zu2a1 137 AEAYKQGL 144 (145)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHhc
Confidence 66666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=5.9e-05 Score=74.70 Aligned_cols=108 Identities=9% Similarity=-0.037 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CcchHHHHHHHHH
Q 007288 315 FTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQKIFSEMS--DR-DLVTWTSMMIGYG 391 (609)
Q Consensus 315 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~ 391 (609)
..+..+...+.+.|+.+.|...+....... ....+..+..++...|++++|...|++.. .| +...|+.|...+.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344444555555566666655554443321 12344555666666666666666666655 23 3346666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007288 392 AHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACS 426 (609)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 426 (609)
..|+..+|+..|.+..... .|-..++..|...+.
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 6666666666666666542 344455555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00029 Score=51.39 Aligned_cols=73 Identities=14% Similarity=-0.047 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHH
Q 007288 453 YGCVVDLLGRAGRVKEAYELIKSM----P----FKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILS 523 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 523 (609)
+-.+...+.+.|++++|+..|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335666777777777777777665 1 1122 456778889999999999999999999999998888887765
Q ss_pred HH
Q 007288 524 NI 525 (609)
Q Consensus 524 ~~ 525 (609)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.32 E-value=0.0025 Score=52.54 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007288 417 VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM 476 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
.+..+...+...|++++|+..++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44555566666666666666666665544 235566666666666666666666666553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.30 E-value=5.6e-05 Score=60.59 Aligned_cols=98 Identities=8% Similarity=-0.015 Sum_probs=66.3
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHH
Q 007288 426 SHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAA 505 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 505 (609)
.+.+.+++|+..|+...+.. +.+..++..+..+|...+++..+.+ ..+.+++|+..+
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~~ 64 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHHH
Confidence 34445556666666655444 2244555555555554444433322 223467899999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCC-----------hHHHHHHHHHHHhCC
Q 007288 506 LRVLDLKPNMMGTYIILSNIYAAEGK-----------WEEFAKFRKIMRGMG 546 (609)
Q Consensus 506 ~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~ 546 (609)
+++++++|++..+|..++.+|...|+ +++|.+.|++..+..
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 99999999999999999999988764 688888888888743
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.28 E-value=0.00042 Score=61.50 Aligned_cols=127 Identities=11% Similarity=-0.065 Sum_probs=83.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 391 GAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+... -+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHHHH
Confidence 45688999999999988852 33556888888899999999999999998876542 13444555555555555555443
Q ss_pred HHHHhC--CCCCC-HhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchH
Q 007288 471 ELIKSM--PFKPD-ESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTY 519 (609)
Q Consensus 471 ~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 519 (609)
.-.... ...|+ ...+......+...|+.++|...++++.+..|..+..+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 332222 11222 22233334667788899999999988888888665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00075 Score=49.09 Aligned_cols=63 Identities=11% Similarity=-0.105 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 484 VWGPLLGACKEHRLPNLGKLAALRVLDLKPNM-------MGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
.+-.+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|+..+++..+..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34467788999999999999999998865532 4578899999999999999999999998743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.03 E-value=0.0022 Score=51.64 Aligned_cols=63 Identities=11% Similarity=-0.070 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-----HhhHHHHHHHHHhCCChHHHHHHHHHHhccCC
Q 007288 451 EIYGCVVDLLGRAGRVKEAYELIKSM--------PFKPD-----ESVWGPLLGACKEHRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 513 (609)
..|+.+..+|...|++++|++.+++. ...++ ...+..+..+|...|++++|...|++++++.|
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555566666666666665555443 11121 12355566778888888888888888877655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.92 E-value=0.00041 Score=61.54 Aligned_cols=121 Identities=11% Similarity=0.076 Sum_probs=86.0
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHhCCChHHHH
Q 007288 425 CSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAYELIKSM-PFKPDES-VWGPLLGACKEHRLPNLGK 502 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~ 502 (609)
..+.|++++|+..+++..+.. +-|...+..+...|+..|++++|...++.. ...|+.. .+..+..++...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 456799999999999998866 347889999999999999999999999988 5566543 4444444444433333332
Q ss_pred HHHHHHhc-cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007288 503 LAALRVLD-LKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMG 546 (609)
Q Consensus 503 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 546 (609)
........ ..|++...+...+..+...|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 22222111 234444555667888999999999999999987743
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.60 E-value=0.077 Score=40.64 Aligned_cols=51 Identities=14% Similarity=-0.040 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 007288 496 RLPNLGKLAALRVLDLKPNMMGTYIILSNIYAA----EGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 496 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 548 (609)
.+.++|.+.++++.+.. ++.....|+..|.. ..+.++|.+++++..+.|..
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 46677788888777654 35667778887776 45788888888888877653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.35 E-value=0.33 Score=35.60 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=102.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-hhcCCCCChhHHHHHHHHHhhcCCHHH
Q 007288 390 YGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSM-NDYNVNPNKEIYGCVVDLLGRAGRVKE 468 (609)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
+.-.|..++..+++.+.... .+..-|+.+|--....-+-+...+.++.. .-..+ ..+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 45568888888988888763 35667777777666777766666666665 22222 24455555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 007288 469 AYELIKSMPFKPDESVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKIMRGMGSK 548 (609)
Q Consensus 469 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 548 (609)
...-+-.++ .+...+...++...++|+-+.-..+++.+++.+..++.....++.+|.+.|...++-+++.+..++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555555543 244556677788889999999999999987765557889999999999999999999999999999985
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=2.3 Score=39.91 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 007288 394 GHGKEAIELFDEMVKSG-VRPDRI--VFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGRVKEAY 470 (609)
Q Consensus 394 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
.+.+.|..++....... ..++.. .-..+.......+..+.+...+......+ .+.....-.+....+.+++..+.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence 46677777777665532 222111 11122222334455666666666554433 23333333444455667777777
Q ss_pred HHHHhCCCCCCH-hhH-HHHHHHHHhCCChHHHHHHHHHHhc
Q 007288 471 ELIKSMPFKPDE-SVW-GPLLGACKEHRLPNLGKLAALRVLD 510 (609)
Q Consensus 471 ~~~~~~~~~p~~-~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 510 (609)
..++.++..|.. .-| -=+..++...|+.+.|...+..+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 777777533321 222 2233667777777777777777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.11 E-value=0.34 Score=36.77 Aligned_cols=111 Identities=9% Similarity=-0.046 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhh----cCCHHHHH
Q 007288 395 HGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGR----AGRVKEAY 470 (609)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 470 (609)
++++|++.|++..+.|.. . ....|. .....+.++|..++++..+.| +......|...|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 567777777777776522 2 122222 233456777888777776655 34444455555543 45677888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHh----CCChHHHHHHHHHHhccCC
Q 007288 471 ELIKSMPFKPDESVWGPLLGACKE----HRLPNLGKLAALRVLDLKP 513 (609)
Q Consensus 471 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 513 (609)
++|++.-..-+......|...|.. ..|.++|...++++.+...
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888776222244445555555554 4577888888888776554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.79 E-value=0.84 Score=33.40 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=80.3
Q ss_pred HhCC-chHHHHHHHHhHHCCCCCCHHhHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007288 291 EKSG-SSECLNMFSKMKSERFSPNCFTFTSIIAACATLAALSCGQQVHAGIVRRGLDGNLALANALIDMYAKCGNISDSQ 369 (609)
Q Consensus 291 ~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (609)
.-.| .++..+++.+...+ .+..-|+-++--....-+-+...+.++.+-+. .| ..+++++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3445 55666666655543 24444554444444444444444444333211 11 11233333333
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 007288 370 KIFSEMSDRDLVTWTSMMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVN 447 (609)
Q Consensus 370 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 447 (609)
..+-.+- .+...++..++.+..+|+-+.-.++++.+.+. -+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 77 ~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 77 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3333222 23344566677788888888888888887764 4778888888888888888888888888888777754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.22 Score=36.90 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007288 498 PNLGKLAALRVLDLKPNMM-GTYIILSNIYAAEGKWEEFAKFRKIMRG 544 (609)
Q Consensus 498 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 544 (609)
.++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++++.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4456666666666665432 4555666666666666666666666665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.08 E-value=0.64 Score=34.31 Aligned_cols=72 Identities=7% Similarity=-0.092 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CH-hhHHHHHHHHHhCCChHHHHHHHHHHhccCCCCcch
Q 007288 447 NPNKEIYGCVVDLLGRAGR---VKEAYELIKSM-PFKP-DE-SVWGPLLGACKEHRLPNLGKLAALRVLDLKPNMMGT 518 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 518 (609)
.++..+--.+..++.++.+ .++++.+++++ ...| +. ..+..|.-+|.+.|+++.|...++++++++|++..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3444454456666666544 45677777776 2234 22 455666677888899999999999999999976543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=11 Score=34.90 Aligned_cols=352 Identities=9% Similarity=-0.025 Sum_probs=198.2
Q ss_pred HHHHHHhcCCCHHHHHHHHccCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCchh
Q 007288 153 LMDVYATCCISMDNARLVFNDMKWKNDVSWTTLITGYAHSGNGYGGLGVFKEMLLEGVEMNPYSFSIAVRACASTGWVSF 232 (609)
Q Consensus 153 ll~~~~~~g~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 232 (609)
.+..+.+.+ +.......+...+ .+...-.....+....|+.+.|...+...-..|.. ..+.
T Consensus 78 ~l~~L~~~~-~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~ 138 (450)
T d1qsaa1 78 FVNELARRE-DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNA 138 (450)
T ss_dssp HHHHHHHTT-CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTH
T ss_pred HHHHHHhcc-CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchH
Confidence 345556666 7776666554332 35555566778888889998888887777655422 2223
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCchHHHHHHHHhHHCCCCC
Q 007288 233 GKLIHAAVIKHGFGSNLPVMNSILDMYCRFDCLSDANQYFDEMTEKDLITWNTIIAGYEKSGSSECLNMFSKMKSERFSP 312 (609)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~m~~~~~~p 312 (609)
+..++..+.+.| ..+...+-.-+......|+...|..+...+...........+....+.. .+...... ..+
T Consensus 139 c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~--~~~~~~~~-----~~~ 210 (450)
T d1qsaa1 139 CDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN--TVLTFART-----TGA 210 (450)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG--GHHHHHHH-----SCC
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChH--hHHHHHhc-----CCC
Confidence 334444444444 3444444455666677789999999988877554444444444432222 22211111 122
Q ss_pred CHHhHHHHHHHHHh--hccHHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCCHHHHHHHHHhcCC--CCcchHHH
Q 007288 313 NCFTFTSIIAACAT--LAALSCGQQVHAGIVRRGLDGNLALA---NALIDMYAKCGNISDSQKIFSEMSD--RDLVTWTS 385 (609)
Q Consensus 313 ~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 385 (609)
+......+..++.+ ..+.+.+...+............... ..+...+...+..+.+...+..... .+.....-
T Consensus 211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w 290 (450)
T d1qsaa1 211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIER 290 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHH
T ss_pred ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHH
Confidence 33333333333333 35677788887777654422222211 1122222335666777666655442 23333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHhhcCC
Q 007288 386 MMIGYGAHGHGKEAIELFDEMVKSGVRPDRIVFMAVLTACSHAGLVDEGLKYFKSMNDYNVNPNKEIYGCVVDLLGRAGR 465 (609)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
.+......+++..+...+..|... ..-...-.--+.+++...|+.+.|...|..+.. .++ -|..|.. .+.|.
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~ 362 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIGE 362 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTTC
T ss_pred HHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcCC
Confidence 444456678999999888877532 122334445677889999999999999998854 233 3443322 22232
Q ss_pred HHHHHHHHHhCCCCCCH-hhH---HHHHHHHHhCCChHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007288 466 VKEAYELIKSMPFKPDE-SVW---GPLLGACKEHRLPNLGKLAALRVLDLKPNMMGTYIILSNIYAAEGKWEEFAKFRKI 541 (609)
Q Consensus 466 ~~~A~~~~~~~~~~p~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (609)
.-.. . ....+..++. ..- ..-+..+...|....|...+..+.+.. ++.....++....+.|.++.|+....+
T Consensus 363 ~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 363 EYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp CCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 1000 0 0000111111 011 122355778899999999988887643 356777889999999999999988766
Q ss_pred HH
Q 007288 542 MR 543 (609)
Q Consensus 542 m~ 543 (609)
..
T Consensus 439 ~~ 440 (450)
T d1qsaa1 439 GK 440 (450)
T ss_dssp TT
T ss_pred HH
Confidence 54
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