Citrus Sinensis ID: 007291

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61

MAASTTSPNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSRERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA

cccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccccccccccEEEEEEcccEEEEEEEEcccHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccEEEEEEccEEEEEEEcccccEEEccccccccEEEEcccccccccccccccEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEccccccHHHHHcccccEEEccccccEEEEEEccccccccEEEEEcccEEEEEEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEEEccccccccccEEEEcccccccccccEEEEEEEEEcccccEEEEEEEcccccccEEEEcccccccccccccccccHHHHHc

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccEEEEcccccccEEEEccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEcEEEEEEcccEEEEEcccccEEEEEcccccEEEccEEccccccccccccccccccccccEEEEEcccccccEEEEEEEcccccEcccccEccccccEEEcEEEcccEEEEccccEEEcHHHHHcccccEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccEcccccEEEEEEccccccccHHccccccccccEEEEEEEcccccEEEEEccccccccccccccccHcHcccccEEEEEEEccccccccEEEEEEccccEEEEEEEcccccccccEEEcccccccccccccEEEEEEEEcccccEEEEEEEccccccEEEEEccccccccccEEEccHHHHHHcc

maasttspnscswgksqilnpfssslvdkgfptksialkkkpnkslkvesalhspsvlhfpkqpypnpvitrpdstakpdnksnksqgqtqqsqWNPLQRAAAMALDMAENALVSrerqhplpktadprvqiggnfapvperpvrhglpvtgsipecingvylrnganplfepvaghhffdgdgMVHAVTIGNGSASYACRFTETQRLMQErelgrpvfpkaigelhghngiGRLLLFYARGlfglvdhkqgtgvaNAGLVYFNNRIlamseddlpyqvritpsgdletvgrynfnhqlkstmiahpkvdpvskELFALSYdvvqkpylkyfrfsadgdkspdveihlpvptmmhdfaitenfvvipdQQVVFKLQEmitggspviydknkksrFGILaknakdsndiiwiespdTFCFHLWnaweepetdeIVVIGscmtpadsifNECDESLKSVLSEIRLNLKTGESTRRQILSEsdqvnleagmvnrnslgrkTQFAYLAiaepwpkvsgfakvdlssgevkkyfygdnkyggepfflprdannseneddgYILAFVHDEKTWKSELQIVNAMNLQLEAsiklpsrvpygfhgtfvdskdlvnqa

maasttspnscswgksQILNPFSSSLVDKGFPTKSialkkkpnkSLKVESALhspsvlhfpkqpypnPVITRPDSTAkpdnksnksqgqtqqsqWNPLQRAAAMALDMAENALVSRERqhplpktadprvqiGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFrfsadgdkspDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMItggspviydknkkSRFGILAknakdsndiIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNlktgestrrqilsesdqvnleagmvnrnslGRKTQFAYLAiaepwpkvsGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGfhgtfvdskdlvnqa

MAASTTSPNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRaaamaldmaenalVSRERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA

**********************************************************************************************************************************************PVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNL***********************VNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPR*********DGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVD********

****************************************************************************************************AAAMALDMAENALVS**R*****KTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVN**

************WGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQPYPNPVITRPD************************QRAAAMALDMAENALVSRERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA

*******************************************************************************************QSQWNPLQRAAAMALDMAENALVSRERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDL****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		609	2.2.26 [Sep-21-2011]
Q9M6E8		615	9-cis-epoxycarotenoid dio	N/A	no	0.973	0.964	0.713	0.0
Q9C6Z1		589	Probable 9-cis-epoxycarot	yes	no	0.935	0.967	0.7	0.0
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.921	0.936	0.720	0.0
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.844	0.782	0.742	0.0
O49505		583	9-cis-epoxycarotenoid dio	no	no	0.844	0.881	0.737	0.0
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.972	0.980	0.615	0.0
Q9LRM7		577	9-cis-epoxycarotenoid dio	no	no	0.832	0.878	0.582	1e-179
O49675		595	Probable carotenoid cleav	no	no	0.779	0.798	0.393	3e-99
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.848	0.952	0.373	5e-98
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.814	0.908	0.382	1e-96

>sp\|Q9M6E8\|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1	Back alignment and function desciption

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/618 (71%), Positives = 489/618 (79%), Gaps = 25/618 (4%)

Query: 4   STTSPNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQ 63
           +TT P+SCS       +PF         PT  +  KK+   S    +   S   LH+PKQ
Sbjct: 11  NTTLPSSCS-------SPFKDLASTSSSPTTLLPFKKR--SSSNTNTITCSLQTLHYPKQ 61

Query: 64  ---------PYPNPVITRPDSTAKPDNKSNKSQGQTQQ---SQWNPLQRAAAMALDMAEN 111
                      P P+     +T    ++  K    T+Q    +WN LQ+AAA  LDM E 
Sbjct: 62  YQPTSTSTTTTPTPIKPTTTTTTTTPHRETKPLSDTKQPFPQKWNFLQKAAATGLDMVET 121

Query: 112 ALVSRERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLF 171
           ALVS E +HPLPKTADP+VQI GNFAPVPE      LPV G IP+CI+GVY+RNGANPL+
Sbjct: 122 ALVSHESKHPLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLY 181

Query: 172 EPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNG 231
           EPVAGHHFFDGDGMVHAV   NG+ASYACRFTETQRL QE+ LGRPVFPKAIGELHGH+G
Sbjct: 182 EPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSG 241

Query: 232 IGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVG 291
           I RLLLFYAR LF LVD   G GVANAGLVYFNN +LAMSEDDLPY VRIT +GDL TVG
Sbjct: 242 IARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVG 301

Query: 292 RYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVP 351
           RY+FN QL STMIAHPK+DPV+ +L ALSYDVVQKPYLKYFRFSADG KSPDVEI L  P
Sbjct: 302 RYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKEP 361

Query: 352 TMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWI 411
           TMMHDFAITENFVV+PDQQVVFKL EMITGGSPV+YDKNK SRFGIL KNAKD+N + WI
Sbjct: 362 TMMHDFAITENFVVVPDQQVVFKLTEMITGGSPVVYDKNKTSRFGILDKNAKDANAMRWI 421

Query: 412 ESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGEST 471
           ++P+ FCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNL+TG+ST
Sbjct: 422 DAPECFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLRTGKST 481

Query: 472 RRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYG 531
           RR I+S+++QVNLEAGMVNRN LGRKTQFAYLA+AEPWPKVSGFAKVDL SGEV+KY YG
Sbjct: 482 RRPIISDAEQVNLEAGMVNRNKLGRKTQFAYLALAEPWPKVSGFAKVDLFSGEVQKYMYG 541

Query: 532 DNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRV 591
           + K+GGEP FLP    N E E DGYILAFVHDEK WKSELQIVNA NL+LEASIKLPSRV
Sbjct: 542 EEKFGGEPLFLP----NGEEEGDGYILAFVHDEKEWKSELQIVNAQNLKLEASIKLPSRV 597

Query: 592 PYGFHGTFVDSKDLVNQA 609
           PYGFHGTF+ SKDL  QA
Sbjct: 598 PYGFHGTFIHSKDLRKQA 615

Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids, in response to water stress. Active on 9-cis-violaxanthin and 9'-cis-neoxanthin, but not on the all-trans isomers of violaxanthin and neoxanthin.
Phaseolus vulgaris (taxid: 3885)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 5EC: 1

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|O49505\|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		609
68300872		609	9-cis-epoxycarotenoid dioxygenase 2 [Cit	1.0	1.0	0.991	0.0
83628260		609	9-cis-epoxycarotenoid dioxygenase 5 [Cit	1.0	1.0	0.985	0.0
90991014		587	9-cis-epoxycarotenoid dioxygenase [Citru	0.963	1.0	0.996	0.0
90991012		587	9-cis-epoxycarotenoid-dioxygenase [Citru	0.963	1.0	0.982	0.0
90991016		587	9-cis-epoxycarotenoid dioxygenase [Citru	0.963	1.0	0.977	0.0
295393250		608	9-cis-epoxycarotenoid dioxygenase [Gossy	0.986	0.988	0.767	0.0
399932285		601	9-cis-epoxycarotenoid dioxygenase 3 prot	0.975	0.988	0.767	0.0
255557269		607	9-cis-epoxycarotenoid dioxygenase, putat	0.995	0.998	0.772	0.0
359483877		605	PREDICTED: 9-cis-epoxycarotenoid dioxyge	0.983	0.990	0.770	0.0
50346891		580	9-cis-epoxy-carotenoid dioxygenase 2 [So	0.944	0.991	0.764	0.0

>gi\|68300872\|gb\|AAY89371.1\| 9-cis-epoxycarotenoid dioxygenase 2 [Citrus sinensis]	Back alignment and taxonomy information

 Score = 1259 bits (3259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/609 (99%), Positives = 606/609 (99%)

Query: 1   MAASTTSPNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHF 60
           MAASTTSPNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHF
Sbjct: 1   MAASTTSPNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHF 60

Query: 61  PKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSRERQH 120
           PKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSRERQH
Sbjct: 61  PKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSRERQH 120

Query: 121 PLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFF 180
           PLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFF
Sbjct: 121 PLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFF 180

Query: 181 DGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYA 240
           DGDGM HAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYA
Sbjct: 181 DGDGMAHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYA 240

Query: 241 RGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLK 300
           RGLFGLVDH+QGTGVANAGLVYFNNR+LAMSEDDLPYQVRITPSGDLETVGRYNFNHQLK
Sbjct: 241 RGLFGLVDHEQGTGVANAGLVYFNNRLLAMSEDDLPYQVRITPSGDLETVGRYNFNHQLK 300

Query: 301 STMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAIT 360
           STMIAHPKVDP SKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAIT
Sbjct: 301 STMIAHPKVDPDSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAIT 360

Query: 361 ENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFH 420
           ENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFH
Sbjct: 361 ENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFH 420

Query: 421 LWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESD 480
           LWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESD
Sbjct: 421 LWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESD 480

Query: 481 QVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPF 540
           QVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPF
Sbjct: 481 QVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPF 540

Query: 541 FLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFV 600
           F PRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFV
Sbjct: 541 FFPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFV 600

Query: 601 DSKDLVNQA 609
           DSKDLVNQA
Sbjct: 601 DSKDLVNQA 609

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|83628260\|gb\|ABC26010.1\| 9-cis-epoxycarotenoid dioxygenase 5 [Citrus clementina]	Back alignment and taxonomy information

>gi\|90991014\|dbj\|BAE92961.1\| 9-cis-epoxycarotenoid dioxygenase [Citrus sinensis]	Back alignment and taxonomy information

>gi\|90991012\|dbj\|BAE92960.1\| 9-cis-epoxycarotenoid-dioxygenase [Citrus unshiu]	Back alignment and taxonomy information

>gi\|90991016\|dbj\|BAE92962.1\| 9-cis-epoxycarotenoid dioxygenase [Citrus limon]	Back alignment and taxonomy information

>gi\|295393250\|gb\|ADG03462.1\| 9-cis-epoxycarotenoid dioxygenase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|399932285\|gb\|AFP57678.1\| 9-cis-epoxycarotenoid dioxygenase 3 protein family isoform 2 [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|255557269\|ref\|XP_002519665.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi\|223541082\|gb\|EEF42638.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359483877\|ref\|XP_003633030.1\| PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|50346891\|gb\|AAT75152.1\| 9-cis-epoxy-carotenoid dioxygenase 2 [Solanum tuberosum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		609
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.889	0.920	0.720	4.4e-226
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.975	0.991	0.687	4.1e-223
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.957	0.887	0.665	1e-210
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.840	0.878	0.723	1.8e-206
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.914	0.965	0.540	8.4e-161
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.934	0.956	0.356	1.8e-94
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.770	0.871	0.384	4.3e-86
ASPGD\|ASPL0000046682		480	AN1643 [Emericella nidulans (t	0.359	0.456	0.287	1e-32
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.210	0.255	0.312	4.5e-29
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.425	0.534	0.273	2.9e-26

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2116 (749.9 bits), Expect = 4.4e-226, Sum P(2) = 4.4e-226
 Identities = 392/544 (72%), Positives = 458/544 (84%)

Query:    67 NPVITRPDSTAKPDNKS-NKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSRERQHPLPKT 125
             N V   P+    P+  S N    +   S+WNPLQR             + RER  PLPKT
Sbjct:    47 NSVSDTPNLLNFPNYPSPNPIIPEKDTSRWNPLQRAASAALDFAETALLRRERSKPLPKT 106

Query:   126 ADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGM 185
              DPR QI GN+APVPE+ V+  L V G IP+CI+GVYLRNGANPLFEPV+GHH FDGDGM
Sbjct:   107 VDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGM 166

Query:   186 VHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFG 245
             VHAV I NG ASY+CRFTET+RL+QE++LG P+FPKAIGELHGH+GI RL+LFYARGLFG
Sbjct:   167 VHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFG 226

Query:   246 LVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIA 305
             L++HK GTGVANAGLVYF++R+LAMSEDDLPYQVR+T +GDLET+GR++F+ QL S MIA
Sbjct:   227 LLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIA 286

Query:   306 HPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVV 365
             HPK+DPV+KELFALSYDVV+KPYLKYF+FS +G+KSPDVEI L  PTMMHDFAITENFVV
Sbjct:   287 HPKIDPVTKELFALSYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVV 346

Query:   366 IPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAW 425
             IPDQQVVFKL +M  G SPV YD  K SRFGIL +NAKD+++++W+ESP+TFCFHLWNAW
Sbjct:   347 IPDQQVVFKLSDMFLGKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETFCFHLWNAW 406

Query:   426 EEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLE 485
             E PETDE+VVIGSCMTPADSIFNECDE L SVLSEIRLNLKTG+STRR I+  S Q+NLE
Sbjct:   407 ESPETDEVVVIGSCMTPADSIFNECDEQLNSVLSEIRLNLKTGKSTRRTIIPGSVQMNLE 466

Query:   486 AGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRD 545
             AGMVNRN LGRKT++AYLAIAEPWPKVSGFAKVDLS+GEVK +FYG  KYGGEPFFLPR 
Sbjct:   467 AGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKNHFYGGKKYGGEPFFLPRG 526

Query:   546 ANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDL 605
                S+ EDDGYI++FVHDE++W+SEL IVNA+ L+LEA++KLPSRVPYGFHGTFV+S D+
Sbjct:   527 LE-SDGEDDGYIMSFVHDEESWESELHIVNAVTLELEATVKLPSRVPYGFHGTFVNSADM 585

Query:   606 VNQA 609
             +NQA
Sbjct:   586 LNQA 589

GO:0009507 "chloroplast" evidence=ISM

GO:0009579 "thylakoid" evidence=IDA

GO:0009688 "abscisic acid biosynthetic process" evidence=IMP;TAS

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=TAS

GO:0009414 "response to water deprivation" evidence=IGI

GO:0010162 "seed dormancy process" evidence=IGI

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000046682 AN1643 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRR7	NCED3_ARATH	1, ., 1, 3, ., 1, 1, ., 5, 1	0.7204	0.9211	0.9365	no	no
O49505	NCED2_ARATH	1, ., 1, 3, ., 1, 1, ., 5, 1	0.7370	0.8440	0.8816	no	no
Q9M6E8	NCED1_PHAVU	1, ., 1, 3, ., 1, 1, ., 5, 1	0.7135	0.9737	0.9642	N/A	no
O24592	NCED1_MAIZE	1, ., 1, 3, ., 1, 1, ., 5, 1	0.6152	0.9720	0.9801	N/A	no
Q9C6Z1	NCED5_ARATH	1, ., 1, 3, ., 1, 1, ., 5, 1	0.7	0.9359	0.9677	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.1.64	LOW CONFIDENCE prediction!
3rd Layer	1.13.11.51	0.979
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
3rd Layer	1.13.11	0.691
4th Layer	5.2.1.7	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NCED1	SubName- Full=Chromosome chr19 scaffold_111, whole genome shotgun sequence; (609 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005501001	SubName- Full=Chromosome chr13 scaffold_152, whole genome shotgun sequence; (272 aa)	•	•	0.925

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		609
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-177
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	1e-123
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	2e-93
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	5e-14

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

 Score = 1129 bits (2923), Expect = 0.0
 Identities = 439/603 (72%), Positives = 490/603 (81%), Gaps = 14/603 (2%)

Query: 8   PNSCSWGKSQILNPFSSSLVDKGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQPYPN 67
            +S +       +  SSS         S    +   +     S LH+PS+L  PK   P+
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 68  PVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSR-ERQHPLPKTA 126
           P        A             Q  Q NPLQRAAA ALD  E+ALVS  ERQHPLPKTA
Sbjct: 61  PPSVTLPPAATT-----------QTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKTA 109

Query: 127 DPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMV 186
           DP VQI GNFAPVPE+PVRH LPVTG IP+CI+GVY+RNGANPLFEPVAGHH FDGDGMV
Sbjct: 110 DPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMV 169

Query: 187 HAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGL 246
           HAV IGNGSASYACRFTET RL+QER LGRPVFPKAIGELHGH+GI RL+LFYARGLFGL
Sbjct: 170 HAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGL 229

Query: 247 VDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAH 306
           VD  +GTGVANAGLVYFN R+LAMSEDDLPYQVRIT  GDLETVGRY+F+ QL S+MIAH
Sbjct: 230 VDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAH 289

Query: 307 PKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVI 366
           PKVDPV+ ELFALSYDVV+KPYLKYFRFS DG+KSPDVEI L  PTMMHDFAITENFVVI
Sbjct: 290 PKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVVI 349

Query: 367 PDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWE 426
           PDQQVVFKL EMI GGSPV+YDKNK SRFG+L KNA D+++I W+E PD FCFHLWNAWE
Sbjct: 350 PDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWE 409

Query: 427 EPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEA 486
           EPETDE+VVIGSCMTP DSIFNE DESL+SVLSEIRLNL+TGESTRR I+S   QVNLEA
Sbjct: 410 EPETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGE-QVNLEA 468

Query: 487 GMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDA 546
           GMVNRN LGRKT++AYLAIAEPWPKVSGFAKVDLS+GEVKKY YG+ +YGGEPFF+PR +
Sbjct: 469 GMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGS 528

Query: 547 NNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLV 606
             SE EDDGYILAFVHDE+  KSELQ+VNA+NL+LEA++KLPSRVPYGFHGTF+ ++DL+
Sbjct: 529 -GSEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFISAEDLL 587

Query: 607 NQA 609
            QA
Sbjct: 588 KQA 590

Length = 590

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		609
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.97

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

Probab=100.00  E-value=1.2e-148  Score=1243.35  Aligned_cols=554  Identities=79%  Similarity=1.276  Sum_probs=510.5

Q ss_pred             CCccceecccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhhc-ccCCC
Q 007291           43 NKSLKVESALHSPSVLHFPKQPYPNPVITRPDSTAKPDNKSNKSQGQTQQSQWNPLQRAAAMALDMAENALVSR-ERQHP  121 (609)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  121 (609)
                      ++...++|.+++|+++++|+++.+......     ....      ....+++||++|++|+++||++|+.|+++ |..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (590)
T PLN02258         36 RRKPSASSLLHTPSILPLPKLSSPSPPSVT-----LPPA------ATTQTPQLNPLQRAAAAALDAVESALVSHLERQHP  104 (590)
T ss_pred             CCCcccccccCCCCCCCCCccCCCCCcccc-----cccc------ccCCccccCcchhhHHHHHHHHHHHHhhhccccCC
Confidence            455668899999999999988633211111     0111      12355789999999999999999999998 88899


Q ss_pred             CCCCCCCccccccCCcCCCCCCCcccceEeeecCCCCceEEEeecCCCCcCCCCCCcCccCCCceEEEEEcCCceeeeee
Q 007291          122 LPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACR  201 (609)
Q Consensus       122 ~~~~~~p~~~l~g~fapv~ee~~~~~L~V~G~IP~~L~G~~~RNGPnp~f~p~~~~H~FDGDGMvha~~f~~G~a~y~~R  201 (609)
                      ||+++||++||+|||+|++||++..+|+|+|+||+||+|+||||||||+|++..++||||||||||+|+|+||+|+|+||
T Consensus       105 ~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y~~R  184 (590)
T PLN02258        105 LPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASYACR  184 (590)
T ss_pred             CCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEEEee
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             eecchHHHHHHHcCCCcccccccccCCCCchhhhHHhhhhccccccCCCCCCccceeeeeeeCCeEEEEEcCCccEEEec
Q 007291          202 FTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRI  281 (609)
Q Consensus       202 fV~T~~~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi  281 (609)
                      ||||++|++|+++||++|++.+|++++++|++|..++++|.++|.++..+++|+|||+|++|+||||||||+|+||+|++
T Consensus       185 fVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~  264 (590)
T PLN02258        185 FTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRI  264 (590)
T ss_pred             eecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceEecC
Confidence            99999999999999999998899999999999999888998888888777899999999999999999999999999998


Q ss_pred             CCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCCcEEEEEEcCCCCCcceEEEeCCccccccccccCC
Q 007291          282 TPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITE  361 (609)
Q Consensus       282 ~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTe  361 (609)
                      +|++||||+|++||+|+|..+||||||+||.|||||+|+|++.++|+++||++|++|++.+.++|+++.++|||||||||
T Consensus       265 d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HDFaiTe  344 (590)
T PLN02258        265 TGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITE  344 (590)
T ss_pred             CCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccceeccC
Confidence            87679999999999999988999999999999999999999877899999999999999999999999999999999999


Q ss_pred             CeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCceEEEecCceeEEeccccccCCCCCcEEEEEeecC
Q 007291          362 NFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMT  441 (609)
Q Consensus       362 nYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~  441 (609)
                      ||+||+++|+++++.+|+.|++++.||+++++|||||||++++.+++|||++|+||+||++|||||+++|+||+++||+.
T Consensus       345 nY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd~~~~~  424 (590)
T PLN02258        345 NFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVIGSCMT  424 (590)
T ss_pred             ceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEEEeccc
Confidence            99999999999999999999999999999999999999998777789999999999999999999865678999999998


Q ss_pred             CCcchhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccCcccCCccCCCCCceEEEeeccCCCCcCcEEEEecC
Q 007291          442 PADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLS  521 (609)
Q Consensus       442 ~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~  521 (609)
                      +.+.+++...+.++++|+||||||+||+++++++.+ +++.++|||+||++|.||+|||+|+++.+++++++||+|+|++
T Consensus       425 ~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~-~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~  503 (590)
T PLN02258        425 PPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIIS-GEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLS  503 (590)
T ss_pred             ChhhhcccccccccceEEEEEEECCCCceeeeEeec-CCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECC
Confidence            877777766567889999999999999999988873 1137999999999999999999999998888899999999999


Q ss_pred             CCCeEEEEcCCCccCCccEeeecCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCeeEEEEcCCcCCCCccccccc
Q 007291          522 SGEVKKYFYGDNKYGGEPFFLPRDANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVD  601 (609)
Q Consensus       522 tg~~~~~~~g~g~~~gEPvFVPr~~~~~~~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~  601 (609)
                      +|+++.|++|+|+|+|||+||||+++ +.+|||||||++|||+++++|+|+||||++|++||||+||+||||||||+|++
T Consensus       504 tg~~~~~~~g~g~~~gEPvFVPr~~~-~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~VArv~LP~rVP~GFHG~wv~  582 (590)
T PLN02258        504 TGEVKKYIYGEGRYGGEPFFVPRGSG-SEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFIS  582 (590)
T ss_pred             CCcEEEEECCCCccccCCEeccCCCC-CcccCCcEEEEEEEECCCCceEEEEEeCCCCcccEEEECCCCCCCcccccccC
Confidence            99999999999999999999999963 33599999999999999999999999999999999999999999999999999


Q ss_pred             CcchhccC
Q 007291          602 SKDLVNQA  609 (609)
Q Consensus       602 ~~~l~~q~  609 (609)
                      ++||++|+
T Consensus       583 ~~~l~~q~  590 (590)
T PLN02258        583 AEDLLKQA  590 (590)
T ss_pred             HHHHhhcC
Confidence            99999995

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		609
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		0.0
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		3e-26
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		6e-07

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/496 (68%), Positives = 401/496 (80%), Gaps = 3/496 (0%) Query: 117 ERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAG 176 ER H LP TADP VQI GNFAPV ERP H LPV+G IP I+GVY RNGANP F+PVAG Sbjct: 33 ERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAG 92 Query: 177 HHFFDGDGMVHAVTIGNGSA-SYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRL 235 HH FDGDGMVHA+ I NG+A SYACRFTET RL QER +GRPVFPKAIGELHGH+GI RL Sbjct: 93 HHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARL 152 Query: 236 LLFYARGLFGLVDHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNF 295 LFYAR GLVD GTGVANAGLVYFN R+LAMSEDDLPY VR+ GDLETVGRY+F Sbjct: 153 ALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDF 212 Query: 296 NHQLKSTMIAHPKVDPVSKELFALSYDVVQKPYLKYFRFSADGDKSPDVEIHLPVPTMMH 355 + QL MIAHPK+DP + EL ALSYDV+++PYLKYF F DG KS DVEI L PTM+H Sbjct: 213 DGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIH 272 Query: 356 DFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSNDIIWIESPD 415 DFAITEN VV+PD QVVFKLQEM+ GGSPV+ D K SRFG+L K+A D++++ W++ PD Sbjct: 273 DFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPD 332 Query: 416 TFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQI 475 FCFHLWNAWE+ T E+VVIGSCMTPADSIFNE DE L+SVL+EIRL+ +TG STRR + Sbjct: 333 CFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAV 392 Query: 476 LSESDQVNLEAGMVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKY 535 L S QVNLE GMVNRN LGR+T++AYLA+AEPWPKVSGFAKVDLS+GE+ K+ YG+ ++ Sbjct: 393 LPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRF 452 Query: 536 GGEPFFLPRD--ANNSENEDDGYILAFVHDEKTWKSELQIVNAMNLQLEASIKLPSRVPY 593 GGEP F+P D A + EDDGY+L FVHDE+ SEL +VNA +++LEA+++LPSRVP+ Sbjct: 453 GGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLEATVQLPSRVPF 512 Query: 594 GFHGTFVDSKDLVNQA 609 GFHGTF+ ++L QA Sbjct: 513 GFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		609
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	0.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-168
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-145
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  600 bits (1547), Expect = 0.0
 Identities = 352/528 (66%), Positives = 416/528 (78%), Gaps = 5/528 (0%)

Query: 87  QGQTQQSQWNPLQRAAAMALDMAENALVSR--ERQHPLPKTADPRVQIGGNFAPVPERPV 144
           + +  + Q N  QRAAA ALD  E   V+   ER H LP TADP VQI GNFAPV ERP 
Sbjct: 1   KAEGGKKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPP 60

Query: 145 RHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSA-SYACRFT 203
            H LPV+G IP  I+GVY RNGANP F+PVAGHH FDGDGMVHA+ I NG+A SYACRFT
Sbjct: 61  VHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFT 120

Query: 204 ETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYF 263
           ET RL QER +GRPVFPKAIGELHGH+GI RL LFYAR   GLVD   GTGVANAGLVYF
Sbjct: 121 ETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYF 180

Query: 264 NNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDV 323
           N R+LAMSEDDLPY VR+   GDLETVGRY+F+ QL   MIAHPK+DP + EL ALSYDV
Sbjct: 181 NGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDV 240

Query: 324 VQKPYLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGS 383
           +++PYLKYF F  DG KS DVEI L  PTM+HDFAITEN VV+PD QVVFKLQEM+ GGS
Sbjct: 241 IKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGS 300

Query: 384 PVIYDKNKKSRFGILAKNAKDSNDIIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPA 443
           PV+ D  K SRFG+L K+A D++++ W++ PD FCFHLWNAWE+  T E+VVIGSCMTPA
Sbjct: 301 PVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPA 360

Query: 444 DSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAGMVNRNSLGRKTQFAYL 503
           DSIFNE DE L+SVL+EIRL+ +TG STRR +L  S QVNLE GMVNRN LGR+T++AYL
Sbjct: 361 DSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYL 420

Query: 504 AIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPR--DANNSENEDDGYILAFV 561
           A+AEPWPKVSGFAKVDLS+GE+ K+ YG+ ++GGEP F+P    A +   EDDGY+L FV
Sbjct: 421 AVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFV 480

Query: 562 HDEKTWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA 609
           HDE+   SEL +VNA +++LEA+++LPSRVP+GFHGTF+  ++L  QA
Sbjct: 481 HDERAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		609
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=4.7e-143  Score=1193.42  Aligned_cols=519  Identities=68%  Similarity=1.142  Sum_probs=488.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHhhhc--ccCCCCCCCCCCccccccCCcCCCCCCCcccceEeeecCCCCceEEEeecCC
Q 007291           91 QQSQWNPLQRAAAMALDMAENALVSR--ERQHPLPKTADPRVQIGGNFAPVPERPVRHGLPVTGSIPECINGVYLRNGAN  168 (609)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~l~g~fapv~ee~~~~~L~V~G~IP~~L~G~~~RNGPn  168 (609)
                      ..++|||+|++|+++||++|++|+++  +.++|||+++||+++|+|||+||+||++..+|+|+|+||+||+|+|||||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpn   84 (529)
T 3npe_A            5 GKKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN   84 (529)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred             CcCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCC
Confidence            44679999999999999999999997  6689999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcCccCCCceEEEEEcCCce-eeeeeeecchHHHHHHHcCCCcccccccccCCCCchhhhHHhhhhcccccc
Q 007291          169 PLFEPVAGHHFFDGDGMVHAVTIGNGSA-SYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLV  247 (609)
Q Consensus       169 p~f~p~~~~H~FDGDGMvha~~f~~G~a-~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~~~g~~g~ar~~~~~~r~~~g~~  247 (609)
                      |+|++..++||||||||||+|+|+||+| +|+||||||++|++|+++||++||+++|+++++++++|..+++.|..+|++
T Consensus        85 P~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  164 (529)
T 3npe_A           85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV  164 (529)
T ss_dssp             CSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred             cCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence            9998888899999999999999999999 999999999999999999999999999999999999999888888888887


Q ss_pred             CCCCCCccceeeeeeeCCeEEEEEcCCccEEEecCCCCCcccceeecccCccccccccCCeecCCCCeeEEEEeeeccCC
Q 007291          248 DHKQGTGVANAGLVYFNNRILAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFALSYDVVQKP  327 (609)
Q Consensus       248 ~~~~~~~~ANT~vv~~~grLlAl~E~g~Py~ldi~p~~tLeT~G~~df~g~L~~~~tAHPk~Dp~TGel~~f~y~~~~~p  327 (609)
                      +...++++|||||++|+||||||||+|+||+++|||++||||+|++||+|+|.++||||||+||+||||++|+|++.++|
T Consensus       165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p  244 (529)
T 3npe_A          165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP  244 (529)
T ss_dssp             CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred             cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence            76667899999999999999999999999999998866999999999999999999999999999999999999988789


Q ss_pred             cEEEEEEcCCCCCcceEEEeCCccccccccccCCCeEEEecCCccccHHHHhcCCCCeeecCCCCeEEEEEeCcCCCCCc
Q 007291          328 YLKYFRFSADGDKSPDVEIHLPVPTMMHDFAITENFVVIPDQQVVFKLQEMITGGSPVIYDKNKKSRFGILAKNAKDSND  407 (609)
Q Consensus       328 ~l~~~~~d~~G~~~~~~~i~~~~p~~~HDFaiTenYvV~~d~p~~~~~~~m~~g~~~~~~d~~~~tr~~VipR~~~~~~~  407 (609)
                      +++||++|++|++.+.++|+++.|+|||||||||||+||+++|+++++.+|++|++++.|++++++|||||||++++.+.
T Consensus       245 ~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~~~  324 (529)
T 3npe_A          245 YLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASE  324 (529)
T ss_dssp             CCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSGGG
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877678


Q ss_pred             eEEEecCceeEEeccccccCCCCCcEEEEEeecCCCcchhhhccccccCceEEEEEeCCCCCeeEEEeeccCCcccccCc
Q 007291          408 IIWIESPDTFCFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRQILSESDQVNLEAG  487 (609)
Q Consensus       408 v~w~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~d~~~~~~~~~l~~~l~r~ridl~tG~~~~~~l~~~~~~~~~EfP  487 (609)
                      |+||++|+||+||++|||||+++|+||+++||+.+.+.+++...+++++.|+|||||+++|+++++.+.++..+.++|||
T Consensus       325 vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP  404 (529)
T 3npe_A          325 MAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVG  404 (529)
T ss_dssp             CEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEE
T ss_pred             eEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCccccCc
Confidence            99999999999999999998655789999999988888887666778899999999999999999988754446889999


Q ss_pred             ccCCccCCCCCceEEEeeccCCCCcCcEEEEecCCCCeEEEEcCCCccCCccEeeecCCCC--CCCCCCcEEEEEEEeCC
Q 007291          488 MVNRNSLGRKTQFAYLAIAEPWPKVSGFAKVDLSSGEVKKYFYGDNKYGGEPFFLPRDANN--SENEDDGYILAFVHDEK  565 (609)
Q Consensus       488 ~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~--~~~EDDGyLLs~V~d~~  565 (609)
                      +||++|.||+|||+|+++.++++++++|+|+|++||+++.|++|+|+|+|||+||||+++.  +++|||||||++|+|+.
T Consensus       405 ~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~  484 (529)
T 3npe_A          405 MVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDER  484 (529)
T ss_dssp             EECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSS
T ss_pred             eEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECC
Confidence            9999999999999999998888889999999999999999999999999999999998510  36899999999999999


Q ss_pred             CCceEEEEEeCCCCCeeEEEEcCCcCCCCcccccccCcchhccC
Q 007291          566 TWKSELQIVNAMNLQLEASIKLPSRVPYGFHGTFVDSKDLVNQA  609 (609)
Q Consensus       566 ~~~SeL~VlDA~~l~~VArv~LP~rVP~GFHG~fv~~~~l~~q~  609 (609)
                      +++|+|+||||++|++||||+||+||||||||+|++++||++|+
T Consensus       485 ~~~S~LlILDA~~l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          485 AGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             CCcEEEEEEeCCCCccceEEECCCCCCCCccccccCHHHhhhhh
Confidence            99999999999999999999999999999999999999999995

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00