Citrus Sinensis ID: 007327

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
ccccccccccccEEEccccHHHHHHHHHcccccccccccEEEEEcccccccEEEEcccEEEcccccccHHHHHHHcccccEEEEccccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccEEcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccccccEEccccccccccccccccccHHHHcccccccEEHHHHHHccccHHHHHHHHHHHEEccccccccccccccEEEcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcEEcccccccEEEcccccHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccEEEccccEEEEccccccHHHHHHHcccEEcccccEEEEEEccccccEEEEEEcccEEEccccccHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHcccEEEcccccccEccccEEEcccccHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEcccccEEcccccHHHHHHHHHHHcccEccccHHHHHHHHHHHHHHHHHcccEEcccccccccccccHHHHHHHccccccccEEEEccccccccHHHccccHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccHHEEEcc
matgqlfsKTTQALFYNykqlpiqrmldfdflcgretpsvagiinpgaegfqklffgqeeiaipvhSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSnnkvvigpatvggiqagafkigdtagtidniihcklyrpgsvgfvsksggmsnELYNTIARVTDGIYegiaiggdvfpgstlsdhilrfnnipQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLfksevqfghagaksggemESAQAKNQALRdagavvptsYEAFESAIKETFEKLVeegkippvkevtppqipedlntaiksgkvrapthiistisddrgeepcyagvpmssiveqgygvgdvISLLWFKRSLPRYCTQFIEICIMLCadhgpcvsgahntiVTARAGKDLVSSLVSGLltigprfggaiDDAARYFKDAYDRGLSAYEFVESMKkkgirvpgighrikrgdnRDKRVELLQKFARthfpsvkymEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLagsgmfskqEIDEIVEIGYLNGLFVLARSIglightfdqkrlkqplyrhpwedvlytk
matgqlfsktTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAlkqgkvnkpVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEgkippvkevtppqipEDLNtaiksgkvrapthiistisddrgeePCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVEsmkkkgirvpgighrikrgdnrdkRVELLQKfarthfpsvkyMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTfdqkrlkqplyrhpwedvlytk
MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFssfrsaaassmaaLKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
*******SKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFG**************************V*TSYEAFESAIKETF************************************THIISTIS***GEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY**
**TGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKS*VQ**************AQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFG************************AVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
**TGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKGIRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query608 2.2.26 [Sep-21-2011]
Q93VT8608 ATP-citrate synthase beta yes no 1.0 1.0 0.932 0.0
Q9FGX1608 ATP-citrate synthase beta yes no 1.0 1.0 0.935 0.0
Q9C522608 ATP-citrate synthase beta yes no 1.0 1.0 0.927 0.0
Q54YA0622 Probable ATP-citrate synt yes no 0.990 0.967 0.648 0.0
Q9P7W3615 Probable ATP-citrate synt yes no 0.990 0.978 0.555 0.0
Q91V921091 ATP-citrate synthase OS=M yes no 0.993 0.553 0.535 0.0
P166381100 ATP-citrate synthase OS=R yes no 0.993 0.549 0.535 0.0
P533961101 ATP-citrate synthase OS=H yes no 0.988 0.545 0.533 0.0
Q2TCH31101 ATP-citrate synthase OS=O N/A no 0.993 0.548 0.530 0.0
Q32PF21091 ATP-citrate synthase OS=B yes no 0.993 0.553 0.528 0.0
>sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/608 (93%), Positives = 592/608 (97%)

Query: 1   MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEE 60
           MATGQ+FSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPG++GFQKLFFGQEE
Sbjct: 1   MATGQIFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSDGFQKLFFGQEE 60

Query: 61  IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 120
           IAIPVH T+EAAC AHP ADVFINF+SFRSAAASSM+ALKQPTIRVVAIIAEGVPE+DTK
Sbjct: 61  IAIPVHPTIEAACNAHPTADVFINFASFRSAAASSMSALKQPTIRVVAIIAEGVPESDTK 120

Query: 121 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 180
           QLI+YAR+NNKV+IGPATVGGIQAGAFKIGDTAGTIDNII CKLYRPGSVGFVSKSGGMS
Sbjct: 121 QLISYARANNKVIIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMS 180

Query: 181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240
           NE+YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGG+DEYSL
Sbjct: 181 NEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGKDEYSL 240

Query: 241 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 300
           VEALKQGKV KPVVAWVSGTCARLFKSEVQFGHAGAKSGGE+ESAQAKNQAL+DAGAVVP
Sbjct: 241 VEALKQGKVQKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALKDAGAVVP 300

Query: 301 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 360
           TSYEA E+AIKETFEKLVE+GKI PV E+TPP IPEDL TAIKSGKVRAPTHIISTISDD
Sbjct: 301 TSYEALETAIKETFEKLVEDGKISPVTEITPPPIPEDLKTAIKSGKVRAPTHIISTISDD 360

Query: 361 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 420
           RGEEPCYAGVPMS+I+EQGYGVGDVISLLWFKRSLPRYCTQFIE+CIMLCADHGPCVSGA
Sbjct: 361 RGEEPCYAGVPMSTIIEQGYGVGDVISLLWFKRSLPRYCTQFIEMCIMLCADHGPCVSGA 420

Query: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480
           HN+IVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDR L+ YEFVE MKKKG
Sbjct: 421 HNSIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVEGMKKKG 480

Query: 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540
           IRVPGIGHRIK  DNRDKRV+LLQK+A THFPSVKYMEYAVQVETYTLSKANNLVLNVDG
Sbjct: 481 IRVPGIGHRIKSRDNRDKRVQLLQKYAHTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540

Query: 541 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600
           AIGSLFLDLL+GSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct: 541 AIGSLFLDLLSGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query: 601 WEDVLYTK 608
           WEDVLYTK
Sbjct: 601 WEDVLYTK 608
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|Q9FGX1|ACLB2_ARATH ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana GN=ACLB-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C522|ACLB1_ARATH ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana GN=ACLB-1 PE=2 SV=1 Back     alignment and function description
>sp|Q54YA0|ACLY_DICDI Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly PE=1 SV=1 Back     alignment and function description
>sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.07 PE=1 SV=1 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|P53396|ACLY_HUMAN ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description
>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
225431960608 PREDICTED: ATP-citrate synthase beta cha 1.0 1.0 0.957 0.0
224101561608 predicted protein [Populus trichocarpa] 1.0 1.0 0.955 0.0
356529147608 PREDICTED: ATP-citrate synthase beta cha 1.0 1.0 0.950 0.0
449462152608 PREDICTED: ATP-citrate synthase beta cha 1.0 1.0 0.950 0.0
148872938608 ATP citrate lyase alpha subunit [Glycyrr 1.0 1.0 0.949 0.0
356556001608 PREDICTED: ATP-citrate synthase beta cha 1.0 1.0 0.945 0.0
449524892609 PREDICTED: LOW QUALITY PROTEIN: ATP-citr 1.0 0.998 0.949 0.0
115436118608 Os01g0300200 [Oryza sativa Japonica Grou 1.0 1.0 0.932 0.0
449452925608 PREDICTED: ATP-citrate synthase beta cha 1.0 1.0 0.932 0.0
15919087608 ATP citrate lyase a-subunit [Lupinus alb 1.0 1.0 0.937 0.0
>gi|225431960|ref|XP_002278181.1| PREDICTED: ATP-citrate synthase beta chain protein 2 [Vitis vinifera] gi|296083242|emb|CBI22878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1182 bits (3057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/608 (95%), Positives = 598/608 (98%)

Query: 1   MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEE 60
           MATGQLFS+TTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPG+EGFQKLFFGQEE
Sbjct: 1   MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEE 60

Query: 61  IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 120
           IAIPVHS++EAA AAHP ADVFINF+SFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK
Sbjct: 61  IAIPVHSSIEAASAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 120

Query: 121 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 180
           QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII  KLYRPGSVGFVSKSGGMS
Sbjct: 121 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQSKLYRPGSVGFVSKSGGMS 180

Query: 181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240
           NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDH+LRFNNIPQVKM+VVLGELGGRDEYSL
Sbjct: 181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMVVVLGELGGRDEYSL 240

Query: 241 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 300
           VEALKQGK+NKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAL +AGAVVP
Sbjct: 241 VEALKQGKINKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALSEAGAVVP 300

Query: 301 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 360
           TSYEAFE+AIKETFEKL EEGKI PVKEV PPQIPEDLNTAIKSGKVRAPTHIISTISDD
Sbjct: 301 TSYEAFETAIKETFEKLHEEGKITPVKEVAPPQIPEDLNTAIKSGKVRAPTHIISTISDD 360

Query: 361 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 420
           RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT FIEICIMLCADHGPCVSGA
Sbjct: 361 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTHFIEICIMLCADHGPCVSGA 420

Query: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480
           HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGL+AYEFVE MKKKG
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTAYEFVEDMKKKG 480

Query: 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540
           IRVPGIGHRIKRGDNRDKRVELLQ+FARTHFPSVKYMEYAV+VETYTLSK+NNLVLNVDG
Sbjct: 481 IRVPGIGHRIKRGDNRDKRVELLQRFARTHFPSVKYMEYAVEVETYTLSKSNNLVLNVDG 540

Query: 541 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600
           AIGSLFLDLLAGSGMF+KQEIDEIV+IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct: 541 AIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query: 601 WEDVLYTK 608
           WEDVLYTK
Sbjct: 601 WEDVLYTK 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101561|ref|XP_002312331.1| predicted protein [Populus trichocarpa] gi|222852151|gb|EEE89698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529147|ref|XP_003533158.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449462152|ref|XP_004148805.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|148872938|gb|ABR15094.1| ATP citrate lyase alpha subunit [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|356556001|ref|XP_003546316.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449524892|ref|XP_004169455.1| PREDICTED: LOW QUALITY PROTEIN: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|115436118|ref|NP_001042817.1| Os01g0300200 [Oryza sativa Japonica Group] gi|75249275|sp|Q93VT8.1|ACLB1_ORYSJ RecName: Full=ATP-citrate synthase beta chain protein 1; Short=ATP-citrate synthase B-1; AltName: Full=ATP-citrate lyase B-1; AltName: Full=Citrate cleavage enzyme B-1 gi|14495217|dbj|BAB60936.1| putative ATP citrate lyase a-subunit [Oryza sativa Japonica Group] gi|15623805|dbj|BAB67865.1| putative ATP citrate lyase a-subunit [Oryza sativa Japonica Group] gi|113532348|dbj|BAF04731.1| Os01g0300200 [Oryza sativa Japonica Group] gi|125525538|gb|EAY73652.1| hypothetical protein OsI_01541 [Oryza sativa Indica Group] gi|125570053|gb|EAZ11568.1| hypothetical protein OsJ_01435 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449452925|ref|XP_004144209.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] gi|449530217|ref|XP_004172092.1| PREDICTED: ATP-citrate synthase beta chain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15919087|emb|CAC86995.1| ATP citrate lyase a-subunit [Lupinus albus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
TAIR|locus:2158009608 ACLB-2 "ATP citrate lyase subu 1.0 1.0 0.916 1.9e-303
TAIR|locus:2084284608 ACLB-1 "ATP-citrate lyase B-1" 1.0 1.0 0.907 1.6e-301
DICTYBASE|DDB_G0278345622 acly "ATP citrate synthase" [D 0.990 0.967 0.636 6.3e-211
POMBASE|SPBC1703.07615 SPBC1703.07 "ATP citrate synth 0.990 0.978 0.543 1.1e-179
ASPGD|ASPL0000051301655 aclB [Emericella nidulans (tax 0.988 0.917 0.523 4.1e-175
MGI|MGI:1032511091 Acly "ATP citrate lyase" [Mus 0.988 0.550 0.528 1.1e-174
RGD|20181100 Acly "ATP citrate lyase" [Ratt 0.988 0.546 0.528 1.4e-174
UNIPROTKB|F1LQS41100 Acly "ATP-citrate synthase" [R 0.988 0.546 0.528 1.4e-174
UNIPROTKB|G3V8881101 Acly "ATP citrate lyase, isofo 0.988 0.545 0.528 1.4e-174
UNIPROTKB|G3V9G41091 Acly "ATP citrate lyase, isofo 0.988 0.550 0.528 1.4e-174
TAIR|locus:2158009 ACLB-2 "ATP citrate lyase subunit B 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2912 (1030.1 bits), Expect = 1.9e-303, P = 1.9e-303
 Identities = 557/608 (91%), Positives = 581/608 (95%)

Query:     1 MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEE 60
             MATGQLFS+TTQALFYNYKQLP+QRMLDFDFLCGRETPSVAGIINPG+EGFQKLFFGQEE
Sbjct:     1 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEE 60

Query:    61 IAIPVHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTK 120
             IAIPVH+ +EAACAAHP ADVFINF             LKQPTI+VVAIIAEGVPE+DTK
Sbjct:    61 IAIPVHAAIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIKVVAIIAEGVPESDTK 120

Query:   121 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 180
             QLIAYAR+NNKVVIGPATVGGIQAGAFKIGDTAGTIDNII CKLYRPGSVGFVSKSGGMS
Sbjct:   121 QLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMS 180

Query:   181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240
             NE+YNT+ARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQ+KMMVVLGELGGRDEYSL
Sbjct:   181 NEMYNTVARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQIKMMVVLGELGGRDEYSL 240

Query:   241 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 300
             VEALK+GKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQAL DAGA+VP
Sbjct:   241 VEALKEGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALIDAGAIVP 300

Query:   301 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 360
             TS+EA ESAIKETFEKLVEEGK+ P+KEV PPQIPEDLN+AIKSGKVRAPTHIISTISDD
Sbjct:   301 TSFEALESAIKETFEKLVEEGKVSPIKEVIPPQIPEDLNSAIKSGKVRAPTHIISTISDD 360

Query:   361 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 420
             RGEEPCYAGVPMSSI+EQGYGVGDVISLLWFKRSLPRYCT+FIEICIMLCADHGPCVSGA
Sbjct:   361 RGEEPCYAGVPMSSIIEQGYGVGDVISLLWFKRSLPRYCTKFIEICIMLCADHGPCVSGA 420

Query:   421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480
             HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDA DR L+ YEFVE MKKKG
Sbjct:   421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDACDRNLTPYEFVEGMKKKG 480

Query:   481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540
             IRVPGIGHRIK  DNRDKRVELLQKFAR++FPSVKYMEYAV VETYTLSKANNLVLNVDG
Sbjct:   481 IRVPGIGHRIKSRDNRDKRVELLQKFARSNFPSVKYMEYAVTVETYTLSKANNLVLNVDG 540

Query:   541 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600
             AIGSLFLDLLAGSGMF+KQEIDEIV+IGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct:   541 AIGSLFLDLLAGSGMFTKQEIDEIVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query:   601 WEDVLYTK 608
             WEDVLYTK
Sbjct:   601 WEDVLYTK 608
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=IEA;IDA
GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006085 "acetyl-CoA biosynthetic process" evidence=RCA;TAS
GO:0009346 "citrate lyase complex" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2084284 ACLB-1 "ATP-citrate lyase B-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278345 acly "ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC1703.07 SPBC1703.07 "ATP citrate synthase subunit 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051301 aclB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2018 Acly "ATP citrate lyase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQS4 Acly "ATP-citrate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V888 Acly "ATP citrate lyase, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C522ACLB1_ARATH2, ., 3, ., 3, ., 80.92761.01.0yesno
Q8X097ACL1_NEUCR2, ., 3, ., 3, ., 80.52820.98840.8970N/Ano
Q93VT8ACLB1_ORYSJ2, ., 3, ., 3, ., 80.93251.01.0yesno
Q9FGX1ACLB2_ARATH2, ., 3, ., 3, ., 80.93581.01.0yesno
Q9P7W3ACL1_SCHPO2, ., 3, ., 3, ., 80.55550.99010.9788yesno
Q54YA0ACLY_DICDI2, ., 3, ., 3, ., 80.64840.99010.9678yesno
O93988ACL1_SORMK2, ., 3, ., 3, ., 80.53150.98840.8916N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.30.921
3rd Layer2.3.3.80.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
PLN02522608 PLN02522, PLN02522, ATP citrate (pro-S)-lyase 0.0
cd06100227 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C- 1e-86
COG0074293 COG0074, SucD, Succinyl-CoA synthetase, alpha subu 5e-61
COG0372390 COG0372, GltA, Citrate synthase [Energy production 2e-36
PTZ00187317 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha 9e-31
PRK05678291 PRK05678, PRK05678, succinyl-CoA synthetase subuni 2e-30
TIGR01019286 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a 3e-28
PLN00125300 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi 1e-25
PRK06224263 PRK06224, PRK06224, citrate synthase; Provisional 3e-20
pfam00549128 pfam00549, Ligase_CoA, CoA-ligase 6e-20
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 5e-19
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 2e-17
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 5e-13
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 1e-12
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 1e-10
PLN02456455 PLN02456, PLN02456, citrate synthase 5e-08
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 2e-05
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 2e-04
COG1042598 COG1042, COG1042, Acyl-CoA synthetase (NDP forming 2e-04
pfam0262996 pfam02629, CoA_binding, CoA binding domain 0.001
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 0.002
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score = 1295 bits (3352), Expect = 0.0
 Identities = 566/608 (93%), Positives = 595/608 (97%)

Query: 1   MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEE 60
           MATGQLFS+TTQALFYNYKQLP+QRMLDFDFLCGRETPSVAGIINPG+EGFQKLFFGQEE
Sbjct: 1   MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEE 60

Query: 61  IAIPVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTK 120
           IAIPVH ++EAAC AHP ADVFINF+SFRSAAASSM ALKQPTIRVVAIIAEGVPE+DTK
Sbjct: 61  IAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTK 120

Query: 121 QLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMS 180
           QLIAYAR+NNKVVIGPATVGGIQAGAFKIGDTAGT+DNII CKLYRPGSVGFVSKSGGMS
Sbjct: 121 QLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSKSGGMS 180

Query: 181 NELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL 240
           NE+YN IARVTDGIYEGIAIGGDVFPGSTLSDH+LRFNNIPQ+KM+VVLGELGGRDEYSL
Sbjct: 181 NEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL 240

Query: 241 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVP 300
           VEALKQGKV+KPVVAWVSGTCARLFKSEVQFGHAGAKSGG+MESAQAKN+AL+DAGA+VP
Sbjct: 241 VEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVP 300

Query: 301 TSYEAFESAIKETFEKLVEEGKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDD 360
           TS+EA E+AIKETFEKLVEEGKI PVKEVTPPQIPEDLN+AIKSGKVRAPTHI+STISDD
Sbjct: 301 TSFEALEAAIKETFEKLVEEGKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDD 360

Query: 361 RGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGA 420
           RGEEPCYAGVPMSSI+E+ YGVGDVISLLWFKRSLPRYCT+FIE+CIMLCADHGPCVSGA
Sbjct: 361 RGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVSGA 420

Query: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG 480
           HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGL+ YEFVE MKKKG
Sbjct: 421 HNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG 480

Query: 481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540
           IRVPGIGHRIK  DNRDKRVELLQK+ARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG
Sbjct: 481 IRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDG 540

Query: 541 AIGSLFLDLLAGSGMFSKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600
           AIGSLFLDLLAGSGMF+KQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP
Sbjct: 541 AIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHP 600

Query: 601 WEDVLYTK 608
           WEDVLYTK
Sbjct: 601 WEDVLYTK 608

Length = 608
>gnl|CDD|99854 cd06100, CCL_ACL-C, Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>gnl|CDD|235748 PRK06224, PRK06224, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 608
PLN02522608 ATP citrate (pro-S)-lyase 100.0
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 100.0
PRK05678291 succinyl-CoA synthetase subunit alpha; Validated 100.0
TIGR01019286 sucCoAalpha succinyl-CoA synthetase, alpha subunit 100.0
PLN00125300 Succinyl-CoA ligase [GDP-forming] subunit alpha 100.0
KOG1254600 consensus ATP-citrate lyase [Energy production and 100.0
PTZ00187317 succinyl-CoA synthetase alpha subunit; Provisional 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
PRK14035371 citrate synthase; Provisional 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
PRK14036377 citrate synthase; Provisional 100.0
PRK14034372 citrate synthase; Provisional 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
PRK14037377 citrate synthase; Provisional 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
PLN02456455 citrate synthase 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 100.0
PRK14033375 citrate synthase; Provisional 100.0
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
PRK14032447 citrate synthase; Provisional 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
PRK06224263 citrate synthase; Provisional 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
COG0074293 SucD Succinyl-CoA synthetase, alpha subunit [Energ 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
KOG1255329 consensus Succinyl-CoA synthetase, alpha subunit [ 100.0
PF13607138 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin 100.0
PRK06091555 membrane protein FdrA; Validated 100.0
KOG2617458 consensus Citrate synthase [Energy production and 100.0
PF13380116 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 99.8
COG1832140 Predicted CoA-binding protein [General function pr 98.82
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 98.79
PF0262996 CoA_binding: CoA binding domain; InterPro: IPR0037 98.63
PF01113124 DapB_N: Dihydrodipicolinate reductase, N-terminus; 98.03
TIGR00036266 dapB dihydrodipicolinate reductase. 97.78
COG0289266 DapB Dihydrodipicolinate reductase [Amino acid tra 97.7
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 97.59
PRK00048257 dihydrodipicolinate reductase; Provisional 97.48
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 97.33
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 97.32
PLN02775286 Probable dihydrodipicolinate reductase 97.18
PRK12349 369 citrate synthase 3; Provisional 97.05
PRK14046392 malate--CoA ligase subunit beta; Provisional 96.96
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 96.83
PRK13303265 L-aspartate dehydrogenase; Provisional 96.79
TIGR02130275 dapB_plant dihydrodipicolinate reductase. This nar 96.74
cd06112 373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 96.67
PRK14037 377 citrate synthase; Provisional 96.65
PRK14036 377 citrate synthase; Provisional 96.65
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 96.58
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 96.56
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 96.5
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 96.39
TIGR01800 368 cit_synth_II 2-methylcitrate synthase/citrate synt 96.33
cd06115 410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 96.32
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 96.23
PRK14035 371 citrate synthase; Provisional 96.16
cd06116 384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 96.14
PRK13302271 putative L-aspartate dehydrogenase; Provisional 96.11
PRK13304265 L-aspartate dehydrogenase; Reviewed 96.11
PRK14032 447 citrate synthase; Provisional 96.1
PRK12351 378 methylcitrate synthase; Provisional 96.09
cd06113 406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 96.05
PF03446163 NAD_binding_2: NAD binding domain of 6-phosphogluc 95.97
cd06107 382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 95.96
PRK14033 375 citrate synthase; Provisional 95.94
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 95.92
TIGR01798 412 cit_synth_I citrate synthase I (hexameric type). T 95.91
PRK14034 372 citrate synthase; Provisional 95.64
PLN02456 455 citrate synthase 95.61
cd06105 427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 95.55
PRK09569 437 type I citrate synthase; Reviewed 95.55
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 95.52
PRK11579346 putative oxidoreductase; Provisional 95.45
cd06117 366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 95.36
cd06106 428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 95.29
TIGR01761343 thiaz-red thiazolinyl imide reductase. This reduct 94.83
TIGR03855229 NAD_NadX aspartate dehydrogenase. Members of this 94.63
COG0673342 MviM Predicted dehydrogenases and related proteins 94.62
COG2344211 AT-rich DNA-binding protein [General function pred 94.37
PRK09599301 6-phosphogluconate dehydrogenase-like protein; Rev 94.33
TIGR01793 427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 94.17
cd06103 426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 94.08
PLN02350493 phosphogluconate dehydrogenase (decarboxylating) 93.99
PRK12490299 6-phosphogluconate dehydrogenase-like protein; Rev 93.77
PLN02235423 ATP citrate (pro-S)-lyase 93.64
cd06114 400 EcCS_like Escherichia coli (Ec) citrate synthase ( 93.53
PRK05614 419 gltA type II citrate synthase; Reviewed 93.52
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 93.29
COG2084286 MmsB 3-hydroxyisobutyrate dehydrogenase and relate 93.29
PTZ00142470 6-phosphogluconate dehydrogenase; Provisional 93.05
TIGR00872298 gnd_rel 6-phosphogluconate dehydrogenase (decarbox 93.02
PRK05472213 redox-sensing transcriptional repressor Rex; Provi 92.96
PRK15059292 tartronate semialdehyde reductase; Provisional 92.86
PRK05479330 ketol-acid reductoisomerase; Provisional 92.84
PRK11559296 garR tartronate semialdehyde reductase; Provisiona 92.8
TIGR01692288 HIBADH 3-hydroxyisobutyrate dehydrogenase. This en 92.75
TIGR01921324 DAP-DH diaminopimelate dehydrogenase. This model r 92.54
TIGR01505291 tartro_sem_red 2-hydroxy-3-oxopropionate reductase 92.26
COG0059338 IlvC Ketol-acid reductoisomerase [Amino acid trans 92.12
PRK07634245 pyrroline-5-carboxylate reductase; Reviewed 91.3
TIGR00873467 gnd 6-phosphogluconate dehydrogenase, decarboxylat 91.26
PRK15461296 NADH-dependent gamma-hydroxybutyrate dehydrogenase 91.12
PRK10206344 putative oxidoreductase; Provisional 90.57
PLN028191042 lysine-ketoglutarate reductase/saccharopine dehydr 90.53
PRK13403335 ketol-acid reductoisomerase; Provisional 89.9
PRK14618328 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 89.06
PRK13301267 putative L-aspartate dehydrogenase; Provisional 89.06
PRK09287459 6-phosphogluconate dehydrogenase; Validated 88.75
PF02593217 dTMP_synthase: Thymidylate synthase; InterPro: IPR 88.1
COG1712255 Predicted dinucleotide-utilizing enzyme [General f 87.96
PRK07680273 late competence protein ComER; Validated 87.72
PRK12350353 citrate synthase 2; Provisional 87.56
PF07991165 IlvN: Acetohydroxy acid isomeroreductase, catalyti 87.45
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 86.87
PLN02256304 arogenate dehydrogenase 86.73
TIGR01745366 asd_gamma aspartate-semialdehyde dehydrogenase, ga 86.68
TIGR00465314 ilvC ketol-acid reductoisomerase. This is the seco 85.48
COG0136334 Asd Aspartate-semialdehyde dehydrogenase [Amino ac 84.73
PRK06349426 homoserine dehydrogenase; Provisional 83.99
PRK00094325 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr 83.92
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 83.78
PRK12439341 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 83.4
PLN03139386 formate dehydrogenase; Provisional 83.33
cd07022214 S49_Sppa_36K_type Signal peptide peptidase A (SppA 83.14
PRK06598369 aspartate-semialdehyde dehydrogenase; Reviewed 83.12
PLN02591250 tryptophan synthase 82.31
PRK07574385 formate dehydrogenase; Provisional 82.3
PLN02712667 arogenate dehydrogenase 81.18
PLN02858 1378 fructose-bisphosphate aldolase 81.12
TIGR03026411 NDP-sugDHase nucleotide sugar dehydrogenase. All o 81.03
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 81.02
COG1810224 Uncharacterized protein conserved in archaea [Func 80.52
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=8.2e-136  Score=1129.62  Aligned_cols=608  Identities=93%  Similarity=1.429  Sum_probs=577.9

Q ss_pred             CccCCCCCCCcEEEEEcCCchHHHHHhhCcccCCCCCCcEEEEeCCCCCCccccccCceeecccccCCHHHHhhcCCCcc
Q 007327            1 MATGQLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGAEGFQKLFFGQEEIAIPVHSTVEAACAAHPMAD   80 (608)
Q Consensus         1 ~~~~~l~~p~s~avv~g~~~~~~~~l~~~~~~~~~g~~~v~~v~~p~~~~~~~~~~g~ev~G~~~y~sv~~i~~~~p~vD   80 (608)
                      |++..||+.++.++|+|...+.+|.|++|+|.|+|.+..|+++.||+.++++++|||+++.|+|+|+|++|+..++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~   80 (608)
T PLN02522          1 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD   80 (608)
T ss_pred             CcceeeecCCceeEEEcCcHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence            78999999999999999999999999999999999999999999997777999999999999999999999998887799


Q ss_pred             EEEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCcccccc
Q 007327           81 VFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNII  160 (608)
Q Consensus        81 lavi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~  160 (608)
                      ..||+||+.++.++++|+|.++|||.+||+|+||+|.+|++|+++||++|+||+||||+|++||..+++|.+..++.+.+
T Consensus        81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~~  160 (608)
T PLN02522         81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNII  160 (608)
T ss_pred             EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEECCCCCeeEccCccccccccccccccc
Confidence            99999999999999999999899999999999999999999999999999999999999999999877753222233334


Q ss_pred             cccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHH
Q 007327          161 HCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSL  240 (608)
Q Consensus       161 p~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f  240 (608)
                      ++..++||+||+|||||++++++++++.++|+|||++||+||+.++|+++.|+|+||.+||+||+|++|+|||++++++|
T Consensus       161 ~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f  240 (608)
T PLN02522        161 QCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL  240 (608)
T ss_pred             CcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHH
Confidence            43446899999999999999999999999999999999999999777999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCEEEEEeCCCccCcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHhc
Q 007327          241 VEALKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVEE  320 (608)
Q Consensus       241 ~~~~r~a~~~KPVvvlk~Grs~~g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~~  320 (608)
                      ++++++++++||||++|+|||+.+.|+++++|||||++|++.+++++|+++|||+|+++++|++||+++++..+++|..+
T Consensus       241 ~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~~~  320 (608)
T PLN02522        241 VEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLVEE  320 (608)
T ss_pred             HHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHHhC
Confidence            99999988999999999999995434889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCchhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHH
Q 007327          321 GKIPPVKEVTPPQIPEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCT  400 (608)
Q Consensus       321 G~~~~~~~~~~p~~~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~  400 (608)
                      |.+.|.++..+|+.|+|+++.+.++++...+.|+|+||+.+++++.+||++++|+|++.++|++++++||+|++|++.+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~I~~~~~~~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~  400 (608)
T PLN02522        321 GKIIPVKEVTPPQIPEDLNSAIKSGKVRAPTHIVSTISDDRGEEPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCT  400 (608)
T ss_pred             CceeecCCCCCCCCCcchHHHHhCCceecccceEEEeecCCCCeeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999976799999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCccchhhhhhccCCCChHHHHHHhhhccCCCCcCccHHHHHHHHHHhccCcCHHHHHHHHHHcC
Q 007327          401 QFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLSAYEFVESMKKKG  480 (608)
Q Consensus       401 ~~l~~~lvl~aDHgl~~st~~aar~~aSt~a~~~~av~agl~a~Gp~hGGa~~~a~~~l~~~~~~~~~~~~~v~~~l~~~  480 (608)
                      ++||++||++||||+|+||+|++|+++||++|+|+||+|||+++||+||||++.|++||+++.+.+.+++++|+++++++
T Consensus       401 ~~ld~~Lvl~ADHG~~aSt~~aarv~AStg~dl~savaaGl~alGp~hGGA~e~a~~~l~ei~~~~~~~~~~V~~~~~~~  480 (608)
T PLN02522        401 KFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG  480 (608)
T ss_pred             HHHHHHHHHhccCCCCccHHHHHHHhhccCCcHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCHHHHHHHHHhCC
Confidence            99999999999999999997799999999999999999999999999999999999999999876458999999999999


Q ss_pred             CCcCCCCCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCcccchhhHHHHHHHHhcccCCCCChhh
Q 007327          481 IRVPGIGHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKQE  560 (608)
Q Consensus       481 ~~ipGFGH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~~~~~l~~Nvd~~~a~l~~~lG~~~~~f~~~~  560 (608)
                      ++|||||||+|+.+++|||+++|++++++++..++++++++++|+++.+++++|+|||||++|+++++||+|.+|||++|
T Consensus       481 ~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~~~k~L~~NVDga~a~i~~~lg~p~~~ft~~e  560 (608)
T PLN02522        481 IRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQE  560 (608)
T ss_pred             CccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccCCCCcCcHhHHHHHHHHcCCCcccCcccc
Confidence            99999999999777889999999999999988899999999999987666799999999999999999999999999999


Q ss_pred             HHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCCccccccC
Q 007327          561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK  608 (608)
Q Consensus       561 ~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~~~~~y~~  608 (608)
                      +++++.+++++++|+++|++||+||++||+++.+|++|++||+|+|+|
T Consensus       561 ~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~~~~~i~y~~  608 (608)
T PLN02522        561 IDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK  608 (608)
T ss_pred             ccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccCchhhccccC
Confidence            999999999999999999999999999999999999999999999986

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit Back     alignment and domain information
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A Back     alignment and domain information
>PRK06091 membrane protein FdrA; Validated Back     alignment and domain information
>KOG2617 consensus Citrate synthase [Energy production and conversion] Back     alignment and domain information
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A Back     alignment and domain information
>COG1832 Predicted CoA-binding protein [General function prediction only] Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases Back     alignment and domain information
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] Back     alignment and domain information
>TIGR00036 dapB dihydrodipicolinate reductase Back     alignment and domain information
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK00048 dihydrodipicolinate reductase; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PLN02775 Probable dihydrodipicolinate reductase Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>PRK13303 L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02130 dapB_plant dihydrodipicolinate reductase Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>PRK13302 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PRK13304 L-aspartate dehydrogenase; Reviewed Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK11579 putative oxidoreductase; Provisional Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>TIGR01761 thiaz-red thiazolinyl imide reductase Back     alignment and domain information
>TIGR03855 NAD_NadX aspartate dehydrogenase Back     alignment and domain information
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] Back     alignment and domain information
>COG2344 AT-rich DNA-binding protein [General function prediction only] Back     alignment and domain information
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>PLN02350 phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] Back     alignment and domain information
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional Back     alignment and domain information
>PRK15059 tartronate semialdehyde reductase; Provisional Back     alignment and domain information
>PRK05479 ketol-acid reductoisomerase; Provisional Back     alignment and domain information
>PRK11559 garR tartronate semialdehyde reductase; Provisional Back     alignment and domain information
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase Back     alignment and domain information
>TIGR01921 DAP-DH diaminopimelate dehydrogenase Back     alignment and domain information
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase Back     alignment and domain information
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating Back     alignment and domain information
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional Back     alignment and domain information
>PRK10206 putative oxidoreductase; Provisional Back     alignment and domain information
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase Back     alignment and domain information
>PRK13403 ketol-acid reductoisomerase; Provisional Back     alignment and domain information
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK13301 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PRK09287 6-phosphogluconate dehydrogenase; Validated Back     alignment and domain information
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function Back     alignment and domain information
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] Back     alignment and domain information
>PRK07680 late competence protein ComER; Validated Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PLN02256 arogenate dehydrogenase Back     alignment and domain information
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial Back     alignment and domain information
>TIGR00465 ilvC ketol-acid reductoisomerase Back     alignment and domain information
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PLN03139 formate dehydrogenase; Provisional Back     alignment and domain information
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK07574 formate dehydrogenase; Provisional Back     alignment and domain information
>PLN02712 arogenate dehydrogenase Back     alignment and domain information
>PLN02858 fructose-bisphosphate aldolase Back     alignment and domain information
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>COG1810 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
3mwe_B335 Truncated Human Atp-Citrate Lyase With Tartrate Bou 1e-95
3pff_A829 Truncated Human Atp-Citrate Lyase With Adp And Tart 1e-93
3mwd_B334 Truncated Human Atp-Citrate Lyase With Citrate Boun 2e-91
2yv2_A297 Crystal Structure Of Succinyl-Coa Synthetase Alpha 4e-26
2nu8_A288 C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le 1e-17
2nu7_A288 C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le 3e-17
2nua_A288 C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le 4e-17
1jkj_A288 E. Coli Scs Length = 288 4e-17
1cqi_A286 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 5e-17
2nu9_A288 C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or 1e-14
3ufx_A296 Thermus Aquaticus Succinyl-coa Synthetase In Comple 2e-14
1oi7_A288 The Crystal Structure Of Succinyl-Coa Synthetase Al 3e-14
2scu_A288 A Detailed Description Of The Structure Of Succinyl 5e-14
2nu6_A288 C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le 5e-14
1euc_A311 Crystal Structure Of Dephosphorylated Pig Heart, Gt 1e-12
2fpg_A305 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 2e-12
2yv1_A294 Crystal Structure Of Succinyl-Coa Synthetase Alpha 2e-11
1eud_A311 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 1e-10
2fp4_A305 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 1e-10
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 2e-07
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 5e-06
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 2e-05
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 4e-04
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 335 Back     alignment and structure 
Iteration: 1

 Score =  347 bits (889), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 166/330 (50%), Positives = 221/330 (66%), Gaps = 1/330 (0%)
Query: 6   LFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINP-GAEGFQKLFFGQEEIAIP 64
           LFS+ T+A+ +  +   +Q MLDFD++C R+ PSVA ++ P   +  QK ++G +EI IP
Sbjct: 6   LFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIP 65
Query: 65  VHSTVEAACAAHPMADVFINFXXXXXXXXXXXXXLKQPTIRVVAIIAEGVPEADTKQLIA 124
           V   +  A   HP  DV INF             +    IR +AIIAEG+PEA T++LI 
Sbjct: 66  VFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIK 125
Query: 125 YARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELY 184
            A      +IGPATVGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL 
Sbjct: 126 KADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELN 185
Query: 185 NTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEAL 244
           N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +EY +   +
Sbjct: 186 NIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGI 245
Query: 245 KQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYE 304
           K+G++ KP+V W  GTCA +F SEVQFGHAGA +    E+A AKNQAL++AG  VP S++
Sbjct: 246 KEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFD 305
Query: 305 AFESAIKETFEKLVEEGKIPPVKEVTPPQI 334
                I+  +E LV  G I P +EV PP +
Sbjct: 306 ELGEIIQSVYEDLVANGVIVPAQEVPPPTV 335
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 334 Back     alignment and structure
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297 Back     alignment and structure
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|1JKJ|A Chain A, E. Coli Scs Length = 288 Back     alignment and structure
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286 Back     alignment and structure
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288 Back     alignment and structure
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296 Back     alignment and structure
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288 Back     alignment and structure
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288 Back     alignment and structure
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 Back     alignment and structure
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311 Back     alignment and structure
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305 Back     alignment and structure
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294 Back     alignment and structure
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311 Back     alignment and structure
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-142
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 1e-138
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 6e-37
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 3e-34
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 9e-34
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 3e-33
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 6e-32
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 1e-23
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 5e-13
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 6e-09
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 3e-06
2p2w_A367 Citrate synthase; transferase, structural genomics 4e-06
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 6e-06
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 5e-05
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 9e-05
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 9e-05
1vgm_A378 378AA long hypothetical citrate synthase; open for 1e-04
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 3e-04
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 7e-04
1iom_A377 Citrate synthase; open form, riken structural geno 8e-04
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334 Back     alignment and structure
 Score =  416 bits (1071), Expect = e-142
 Identities = 172/329 (52%), Positives = 228/329 (69%), Gaps = 1/329 (0%)

Query: 5   QLFSKTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPG-AEGFQKLFFGQEEIAI 63
            LFS+ T+A+ +  +   +Q MLDFD++C R+ PSVA ++ P   +  QK ++G +EI I
Sbjct: 5   TLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILI 64

Query: 64  PVHSTVEAACAAHPMADVFINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLI 123
           PV   +  A   HP  DV INF+S RSA  S+M  +    IR +AIIAEG+PEA T++LI
Sbjct: 65  PVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLI 124

Query: 124 AYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNEL 183
             A      +IGPATVGGI+ G FKIG+T G +DNI+  KLYRPGSV +VS+SGGMSNEL
Sbjct: 125 KKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNEL 184

Query: 184 YNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEA 243
            N I+R TDG+YEG+AIGGD +PGST  DH+LR+ + P VKM+VVLGE+GG +EY +   
Sbjct: 185 NNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRG 244

Query: 244 LKQGKVNKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSY 303
           +K+G++ KP+V W  GTCA +F SEVQFGHAGA +    E+A AKNQAL++AG  VP S+
Sbjct: 245 IKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSF 304

Query: 304 EAFESAIKETFEKLVEEGKIPPVKEVTPP 332
           +     I+  +E LV  G I P +EV PP
Sbjct: 305 DELGEIIQSVYEDLVANGVIVPAQEVPPP 333
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297 Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288 Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294 Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288 Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305 Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
3mwd_B334 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
2yv2_A297 Succinyl-COA synthetase alpha chain; COA-binding d 100.0
2fp4_A305 Succinyl-COA ligase [GDP-forming] alpha-chain, mit 100.0
2yv1_A294 Succinyl-COA ligase [ADP-forming] subunit alpha; C 100.0
1oi7_A288 Succinyl-COA synthetase alpha chain; SCS, ligase, 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 100.0
2nu8_A288 Succinyl-COA ligase [ADP-forming] subunit alpha; c 100.0
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 100.0
1y81_A138 Conserved hypothetical protein; hyperthermophIle, 99.82
3ff4_A122 Uncharacterized protein; structural genomics, PSI- 99.82
1iuk_A140 Hypothetical protein TT1466; structural genomics, 99.82
2duw_A145 Putative COA-binding protein; ligand binding prote 99.79
2d59_A144 Hypothetical protein PH1109; COA binding, structur 99.79
3ijp_A288 DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, 98.04
4f3y_A272 DHPR, dihydrodipicolinate reductase; structural ge 97.81
1dih_A273 Dihydrodipicolinate reductase; oxidoreductase; HET 97.7
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 97.64
2csu_A457 457AA long hypothetical protein; structural genomi 97.58
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 97.28
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 97.25
3qy9_A243 DHPR, dihydrodipicolinate reductase; rossmann fold 97.15
3dmy_A480 Protein FDRA; predicted actyl-COA synthetase, nysg 96.82
1p9l_A245 Dihydrodipicolinate reductase; oxidoreductase, lys 96.78
4ew6_A330 D-galactose-1-dehydrogenase protein; nysgrc, PSI-b 96.68
3evn_A329 Oxidoreductase, GFO/IDH/MOCA family; structural ge 96.58
3q2i_A354 Dehydrogenase; rossmann fold, UDP-sugar binding, N 96.48
3c1a_A315 Putative oxidoreductase; ZP_00056571.1, oxidoreduc 96.48
3db2_A354 Putative NADPH-dependent oxidoreductase; two domai 96.45
3kux_A352 Putative oxidoreductase; oxidoreductase family, cs 96.44
1lc0_A294 Biliverdin reductase A; oxidoreductase, tetrapyrro 96.42
3i23_A349 Oxidoreductase, GFO/IDH/MOCA family; structural ge 96.37
2dc1_A236 L-aspartate dehydrogenase; NAD, oxidoreductase; HE 96.35
3e18_A359 Oxidoreductase; dehydrogenase, NAD-binding, struct 96.26
3o9z_A312 Lipopolysaccaride biosynthesis protein WBPB; oxido 96.24
3moi_A387 Probable dehydrogenase; structural genomics, PSI2, 96.19
3fhl_A362 Putative oxidoreductase; NAD-binding domain, PSI-2 96.19
3e9m_A330 Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, 96.14
3oa2_A318 WBPB; oxidoreductase, sugar biosynthesis, dehydrog 96.12
3euw_A344 MYO-inositol dehydrogenase; protein structure init 96.07
4hkt_A331 Inositol 2-dehydrogenase; structural genomics, nys 96.02
3ec7_A357 Putative dehydrogenase; alpha-beta, structural gen 96.01
3keo_A212 Redox-sensing transcriptional repressor REX; DNA b 96.01
1f06_A320 MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH 96.01
3f4l_A345 Putative oxidoreductase YHHX; structural genomics, 95.97
1tlt_A319 Putative oxidoreductase (virulence factor MVIM HO; 95.96
3e82_A364 Putative oxidoreductase; NAD, GFO/IDH/MOCA family, 95.93
3m2t_A359 Probable dehydrogenase; PSI, SGXNY, structural gen 95.92
2p2s_A336 Putative oxidoreductase; YP_050235.1, structural g 95.88
3cea_A346 MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore 95.88
3l6d_A306 Putative oxidoreductase; structural genomics, prot 95.87
1zh8_A340 Oxidoreductase; TM0312, structural genomics, JO ce 95.83
3ezy_A344 Dehydrogenase; structural genomics, unknown functi 95.82
4gmf_A372 Yersiniabactin biosynthetic protein YBTU; rossmann 95.78
3rc1_A350 Sugar 3-ketoreductase; sugar biosynthesis, TDP bin 95.69
3u3x_A361 Oxidoreductase; structural genomics, PSI-biology, 95.68
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 95.67
2h12_A 436 Citrate synthase; acidophIle, acetic acid resistan 95.66
1ydw_A362 AX110P-like protein; structural genomics, protein 95.63
2ho3_A325 Oxidoreductase, GFO/IDH/MOCA family; streptococcus 95.59
3mz0_A344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 95.55
3btv_A438 Galactose/lactose metabolism regulatory protein GA 95.51
3gdo_A358 Uncharacterized oxidoreductase YVAA; structural ge 95.48
3uuw_A308 Putative oxidoreductase with NAD(P)-binding rossm 95.43
4e21_A358 6-phosphogluconate dehydrogenase (decarboxylating; 95.31
4dll_A320 2-hydroxy-3-oxopropionate reductase; structural ge 95.3
3ohs_X334 Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d 95.26
4fb5_A393 Probable oxidoreductase protein; PSI-biology, nysg 95.23
3dty_A398 Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram 95.22
1h6d_A433 Precursor form of glucose-fructose oxidoreductase; 95.19
1yb4_A295 Tartronic semialdehyde reductase; structural genom 95.15
1iom_A 377 Citrate synthase; open form, riken structural geno 95.07
3qha_A296 Putative oxidoreductase; seattle structural genomi 95.06
1vgp_A 373 373AA long hypothetical citrate synthase; open for 94.99
2p2w_A 367 Citrate synthase; transferase, structural genomics 94.98
3bio_A304 Oxidoreductase, GFO/IDH/MOCA family; structural ge 94.88
3o8j_A 404 2-methylcitrate synthase; short chain fatty acids, 94.78
3l96_A 426 Citrate synthase; quaternary, hexamer, GRAM-negati 94.72
2g0t_A350 Conserved hypothetical protein; structural genomic 94.69
2h78_A302 Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 94.66
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 94.64
4had_A350 Probable oxidoreductase protein; structural genomi 94.62
3pdu_A287 3-hydroxyisobutyrate dehydrogenase family protein; 94.61
2glx_A332 1,5-anhydro-D-fructose reductase; NADP(H) dependen 94.59
3pef_A287 6-phosphogluconate dehydrogenase, NAD-binding; gam 94.55
3v5n_A417 Oxidoreductase; structural genomics, PSI-biology, 94.51
2nvw_A479 Galactose/lactose metabolism regulatory protein GA 94.5
1j5p_A253 Aspartate dehydrogenase; TM1643, structural genomi 94.42
3doj_A310 AT3G25530, dehydrogenase-like protein; gamma-hydro 94.38
2gf2_A296 Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct 94.35
2zyd_A480 6-phosphogluconate dehydrogenase, decarboxylating; 94.29
1a59_A 378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 94.15
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 94.11
4gbj_A297 6-phosphogluconate dehydrogenase NAD-binding; stru 94.06
3obb_A300 Probable 3-hydroxyisobutyrate dehydrogenase; struc 93.96
2ixa_A444 Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver 93.8
3cky_A301 2-hydroxymethyl glutarate dehydrogenase; rossmann 93.71
3qsg_A312 NAD-binding phosphogluconate dehydrogenase-like P; 93.43
2p4q_A497 6-phosphogluconate dehydrogenase, decarboxylating; 93.41
3nkl_A141 UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo 93.32
2uyy_A316 N-PAC protein; long-chain dehydrogenase, cytokine; 93.25
1o7x_A 377 Citrate synthase; lyase, tricarboxylic acid cycle; 93.16
1vpd_A299 Tartronate semialdehyde reductase; structural geno 93.11
2vt3_A215 REX, redox-sensing transcriptional repressor REX; 93.1
4gwg_A484 6-phosphogluconate dehydrogenase, decarboxylating; 92.91
2dt5_A211 AT-rich DNA-binding protein; REX, NADH, NAD, rossm 92.88
2iz1_A474 6-phosphogluconate dehydrogenase, decarboxylating; 92.83
1aj8_A 371 Citrate synthase; hyperthermostable, lyase; HET: C 92.78
1csh_A 435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 92.72
1vgm_A 378 378AA long hypothetical citrate synthase; open for 92.66
3ba1_A333 HPPR, hydroxyphenylpyruvate reductase; two domain 92.41
3upl_A446 Oxidoreductase; rossmann fold, NADPH binding; 1.50 92.34
2pgd_A482 6-phosphogluconate dehydrogenase; oxidoreductase ( 92.33
2ifc_A 385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 92.1
1pgj_A478 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o 92.06
3g0o_A303 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine 92.03
3msu_A 427 Citrate synthase; helix bundle, APHA-beta fold, cs 91.69
2cvz_A289 Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; 91.68
4ezb_A317 Uncharacterized conserved protein; structural geno 91.61
3tri_A280 Pyrroline-5-carboxylate reductase; amino acid bios 91.6
2ibp_A 409 Citrate synthase; disulfide bond, homodimer, therm 90.87
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 90.86
3oqb_A383 Oxidoreductase; structural genomics, protein struc 90.45
2rcy_A262 Pyrroline carboxylate reductase; malaria, structur 90.18
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 89.96
4gqa_A412 NAD binding oxidoreductase; structural genomics, P 89.92
3uw3_A377 Aspartate-semialdehyde dehydrogenase; structural g 89.37
3b1f_A290 Putative prephenate dehydrogenase; enzyme, 4-hydro 88.99
3abi_A365 Putative uncharacterized protein PH1688; L-lysine 88.76
4dgs_A340 Dehydrogenase; structural genomics, PSI-biology, N 88.65
2ahr_A259 Putative pyrroline carboxylate reductase; pyrrolin 88.37
1z82_A335 Glycerol-3-phosphate dehydrogenase; TM0378, struct 88.35
2pv7_A298 T-protein [includes: chorismate mutase (EC 5.4.99 88.25
3ip3_A337 Oxidoreductase, putative; structural genomics, PSI 87.96
3pzr_A370 Aspartate-semialdehyde dehydrogenase; NADP, oxidor 87.48
1qp8_A303 Formate dehydrogenase; oxidoreductase; HET: NDP; 2 87.15
1mx3_A347 CTBP1, C-terminal binding protein 1; nuclear prote 86.83
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 86.82
3ggo_A314 Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b 86.72
1vm6_A228 DHPR, dihydrodipicolinate reductase; TM1520, struc 86.68
2obn_A349 Hypothetical protein; structural genomics, joint c 86.05
3gvx_A290 Glycerate dehydrogenase related protein; NYSGXRC, 85.97
3fr7_A525 Putative ketol-acid reductoisomerase (OS05G057370 85.82
4h3v_A390 Oxidoreductase domain protein; structural genomics 84.69
2izz_A322 Pyrroline-5-carboxylate reductase 1; amino-acid bi 84.42
3ktd_A341 Prephenate dehydrogenase; structural genomics, joi 84.18
3pp8_A315 Glyoxylate/hydroxypyruvate reductase A; structural 84.1
1i36_A264 Conserved hypothetical protein MTH1747; NADP bindi 83.75
1sc6_A404 PGDH, D-3-phosphoglycerate dehydrogenase; alloster 82.59
1dxy_A333 D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc 82.46
3gt0_A247 Pyrroline-5-carboxylate reductase; structural geno 82.05
1xea_A323 Oxidoreductase, GFO/IDH/MOCA family; structural ge 81.16
2w2k_A348 D-mandelate dehydrogenase; 2-hydroxyacid dehydroge 80.96
1yqg_A263 Pyrroline-5-carboxylate reductase; structural geno 80.81
1xdw_A331 NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas 80.64
2g76_A335 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor 80.43
3pid_A432 UDP-glucose 6-dehydrogenase; rossmann fold, oxidor 80.39
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Back     alignment and structure
Probab=100.00  E-value=7.2e-71  Score=578.60  Aligned_cols=327  Identities=52%  Similarity=0.896  Sum_probs=282.1

Q ss_pred             CCCCCCCcEEEEEcCCchHHHHHhhCcccCCC-CCCcEEEEeCCCCCC-ccccccCceeecccccCCHHHHhhcCCCccE
Q 007327            4 GQLFSKTTQALFYNYKQLPIQRMLDFDFLCGR-ETPSVAGIINPGAEG-FQKLFFGQEEIAIPVHSTVEAACAAHPMADV   81 (608)
Q Consensus         4 ~~l~~p~s~avv~g~~~~~~~~l~~~~~~~~~-g~~~v~~v~~p~~~~-~~~~~~g~ev~G~~~y~sv~~i~~~~p~vDl   81 (608)
                      ..||+|++++||+|++||.+++|++++|.|.| ++++|++|+ |++++ .++.++|.+..|+|||+|++|++++.|++|+
T Consensus         4 ~~l~~~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~-P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~Dl   82 (334)
T 3mwd_B            4 TTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVY-PFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDV   82 (334)
T ss_dssp             SCCCCTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEEC-TTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTCCE
T ss_pred             ccccCCCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEc-CCCCCccceEeccCccCCceeeCCHHHHhhcCCCCcE
Confidence            58999999999999999999999999985544 377999998 97764 2344577777899999999999876545899


Q ss_pred             EEEeccChhcHHHHHHHhcCCCCCEEEEecCCCCHHHHHHHHHHHHhCCCeEEcCCcccccccCcccccccCCccccccc
Q 007327           82 FINFSSFRSAAASSMAALKQPTIRVVAIIAEGVPEADTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIH  161 (608)
Q Consensus        82 avi~vp~~~~~~~~le~~~~~gv~~~viis~Gf~e~~~~~l~~~a~~~g~rvlGPNc~Gi~~~~~~~l~~~~~~~~~~~p  161 (608)
                      +||+||+.++.++++|+|.++|+|.+||||+||+|.++++|+++||++|+||+||||+|++||+.+++|....+|.+.+|
T Consensus        83 aVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rliGPNc~Gii~p~~~~ig~~~~~~~a~~~  162 (334)
T 3mwd_B           83 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILA  162 (334)
T ss_dssp             EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHHHHH
T ss_pred             EEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEccCCccccCcchhhccccccccccccc
Confidence            99999999877899999998999999999999999999999999999999999999999999986566533455655566


Q ss_pred             ccCCCCCcEEEEecChhHHHHHHHHHHhcCCceeEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEecCCccHHHHH
Q 007327          162 CKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLV  241 (608)
Q Consensus       162 ~~~~~~G~valvSQSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~dv~~~d~l~~l~~Dp~T~~I~ly~E~g~~~~~~f~  241 (608)
                      ...++||+||||||||++++++++|+.++|+|||++||+||+.+.|+|+.|+|+||.+||+||+|+||+|++....++|+
T Consensus       163 ~~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~~  242 (334)
T 3mwd_B          163 SKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKIC  242 (334)
T ss_dssp             TTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHH
T ss_pred             ccCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHHHHH
Confidence            66779999999999999999999999999999999999999944499999999999999999999999665555559999


Q ss_pred             HHHHhCCCCCCEEEEEeCCCcc--CcccccccCCCCCcCCCCcchHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHh
Q 007327          242 EALKQGKVNKPVVAWVSGTCAR--LFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKLVE  319 (608)
Q Consensus       242 ~~~r~a~~~KPVvvlk~Grs~~--g~~~~aa~sHtgalag~~~~~a~~~~a~~~qaGvi~v~~~~el~~~~~~~~~~~~~  319 (608)
                      +++|+.+++||||++|+|||++  |  +++++|||||++|++.+++++|+++|||+|++++++++||+++++.++++|..
T Consensus       243 ~~~r~~~~~KPVV~~kaGrs~~~~g--~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~l~~  320 (334)
T 3mwd_B          243 RGIKEGRLTKPIVCWCIGTCATMFS--SEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLVA  320 (334)
T ss_dssp             HHHHTTSCCSCEEEEEECTTCC------------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCEEEEEcCCCccccc--ccccccchhhhccCCCccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHHHHHH
Confidence            9999988999999999999998  7  89999999999999988999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCC
Q 007327          320 EGKIPPVKEVTPPQ  333 (608)
Q Consensus       320 ~G~~~~~~~~~~p~  333 (608)
                      +|.+.|.++.++|+
T Consensus       321 ~~~~~~~~~~~~~~  334 (334)
T 3mwd_B          321 NGVIVPAQEVPPPT  334 (334)
T ss_dssp             TTSCCCCCCCCCCC
T ss_pred             CCcEeeCCCCCCCC
Confidence            99999999988874
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Back     alignment and structure
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Back     alignment and structure
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Back     alignment and structure
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Back     alignment and structure
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* Back     alignment and structure
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Back     alignment and structure
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Back     alignment and structure
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Back     alignment and structure
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Back     alignment and structure
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Back     alignment and structure
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Back     alignment and structure
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Back     alignment and structure
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Back     alignment and structure
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Back     alignment and structure
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Back     alignment and structure
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Back     alignment and structure
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Back     alignment and structure
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Back     alignment and structure
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Back     alignment and structure
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Back     alignment and structure
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Back     alignment and structure
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Back     alignment and structure
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* Back     alignment and structure
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Back     alignment and structure
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Back     alignment and structure
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Back     alignment and structure
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Back     alignment and structure
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Back     alignment and structure
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Back     alignment and structure
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Back     alignment and structure
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Back     alignment and structure
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Back     alignment and structure
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Back     alignment and structure
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Back     alignment and structure
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Back     alignment and structure
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Back     alignment and structure
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Back     alignment and structure
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Back     alignment and structure
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} Back     alignment and structure
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* Back     alignment and structure
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Back     alignment and structure
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Back     alignment and structure
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Back     alignment and structure
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Back     alignment and structure
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Back     alignment and structure
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A Back     alignment and structure
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* Back     alignment and structure
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Back     alignment and structure
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* Back     alignment and structure
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Back     alignment and structure
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Back     alignment and structure
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Back     alignment and structure
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Back     alignment and structure
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} Back     alignment and structure
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} Back     alignment and structure
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Back     alignment and structure
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} Back     alignment and structure
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Back     alignment and structure
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Back     alignment and structure
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Back     alignment and structure
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Back     alignment and structure
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A Back     alignment and structure
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Back     alignment and structure
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Back     alignment and structure
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Back     alignment and structure
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} Back     alignment and structure
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Back     alignment and structure
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Back     alignment and structure
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} Back     alignment and structure
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Back     alignment and structure
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Back     alignment and structure
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Back     alignment and structure
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Back     alignment and structure
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Back     alignment and structure
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Back     alignment and structure
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Back     alignment and structure
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Back     alignment and structure
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Back     alignment and structure
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 608
d1euca2176 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alph 5e-23
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 8e-23
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 1e-21
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 2e-21
d2nu7a2166 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alph 2e-19
d2csua2161 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chai 6e-19
d1oi7a2167 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alph 1e-18
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 4e-18
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 6e-18
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 1e-16
d2nu7a1119 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c 6e-09
d1euca1130 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c 3e-08
d1oi7a1121 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c 2e-07
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 176 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 94.1 bits (233), Expect = 5e-23
 Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 8/178 (4%)

Query: 140 GGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIA 199
           G I  G  KIG   G I        ++ G +G VS+SG ++ E  +   +V  G    + 
Sbjct: 4   GVINPGECKIGIMPGHI--------HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVG 55

Query: 200 IGGDVFPGSTLSDHILRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSG 259
           IGGD F G+  +D +  F N P  + ++++GE+GG  E +  E LKQ          VS 
Sbjct: 56  IGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSF 115

Query: 260 TCARLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAVVPTSYEAFESAIKETFEKL 317
                     + GHAGA   G    A+ K  AL+ AG VV  S     + I + FEK 
Sbjct: 116 IAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKR 173
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 161 Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 167 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130 Back     information, alignment and structure
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 100.0
d1oi7a2167 Succinyl-CoA synthetase, alpha-chain, C-terminal d 100.0
d2nu7a2166 Succinyl-CoA synthetase, alpha-chain, C-terminal d 100.0
d1euca2176 Succinyl-CoA synthetase, alpha-chain, C-terminal d 100.0
d2csua1129 Acetate-CoA ligase alpha chain, AcdA, N-terminal d 99.92
d1euca1130 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 99.82
d1oi7a1121 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 99.81
d2nu7a1119 Succinyl-CoA synthetase, alpha-chain, N-terminal ( 99.81
d1y81a1116 Hypothetical protein PF0725 {Pyrococcus furiosus [ 99.8
d2d59a1139 Hypothetical protein PH1109 {Pyrococcus horikoshii 99.77
d1iuka_136 Hypothetical protein TT1466 {Thermus thermophilus 99.7
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 98.1
d1diha1162 Dihydrodipicolinate reductase {Escherichia coli [T 97.73
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 97.63
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 97.33
d1yl7a1135 Dihydrodipicolinate reductase {Mycobacterium tuber 96.85
d1f06a1170 Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb 96.57
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 96.38
d2dt5a2126 Transcriptional repressor Rex, C-terminal domain { 95.92
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 95.49
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 95.41
d1vm6a3128 Dihydrodipicolinate reductase {Thermotoga maritima 95.31
d1vpda2161 Hydroxyisobutyrate dehydrogenase {Salmonella typhi 95.28
d1j5pa4132 Hypothetical protein TM1643 {Thermotoga maritima [ 95.21
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 94.93
d1lc0a1172 Biliverdin reductase {Rat (Rattus norvegicus) [Tax 94.59
d1o7xa_ 367 Citrate synthase {Archaeon Sulfolobus solfataricus 94.5
d1xeaa1167 Putative oxidoreductase VCA1048 {Vibrio cholerae [ 94.47
d3cuma2162 Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru 93.66
d1ioma_ 374 Citrate synthase {Thermus thermophilus [TaxId: 274 93.5
d1aj8a_ 371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 93.34
d2g0ta1338 Hypothetical protein TM0796 {Thermotoga maritima [ 93.15
d2nvwa1237 Galactose/lactose metabolism regulatory protein GA 93.05
d1a59a_ 377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 92.78
d1k3pa_ 426 Citrate synthase {Escherichia coli [TaxId: 562]} 92.68
d1i36a2152 Conserved hypothetical protein MTH1747 {Archaeon M 92.23
d2pgda2176 6-phosphogluconate dehydrogenase {Sheep (Ovis orie 91.23
d1csha_ 435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 89.98
d2b0ja2242 5,10-methenyltetrahydromethanopterin hydrogenase, 89.48
d1np3a2182 Class I ketol-acid reductoisomerase (KARI) {Pseudo 86.91
d2cvza2156 Hydroxyisobutyrate dehydrogenase {Thermus thermoph 86.84
d2pv7a2152 Prephenate dehydrogenase TyrA {Haemophilus influen 85.73
d2ahra2152 Pyrroline-5-carboxylate reductase ProC {Streptococ 84.58
d1qmga2226 Class II ketol-acid reductoisomerase (KARI) {Spina 83.65
d2f1ka2165 Prephenate dehydrogenase TyrA {Synechocystis sp. p 82.65
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.7e-52  Score=449.27  Aligned_cols=240  Identities=20%  Similarity=0.212  Sum_probs=216.6

Q ss_pred             chhhhHHHHhcccCCcchhhhheeccCCCCcccCCCCCCcccccCCcHHHHHHHhhcCCCCChhHHHHHHHHHHHhcCCC
Q 007327          335 PEDLNTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHG  414 (608)
Q Consensus       335 ~~~~~~~rllA~~p~i~A~~t~I~~~~g~~i~~~g~dl~~li~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~lvl~aDHg  414 (608)
                      ....++++|+|++|+|+|++|+..++.|+++..++.+++       +.+||++|+ ++  ++|...++||++||||||||
T Consensus       168 ~~~~~a~~LiAk~P~i~A~~yr~~~~~g~~~~~pd~~ls-------~a~nfl~ml-~~--~~p~~~~~l~~~lil~aDHe  237 (435)
T d1csha_         168 FVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLD-------WSHNFTNML-GY--TDPQFTELMRLYLTIHSDHE  237 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSC-------HHHHHHHHH-TC--CCHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCCCCCCCcC-------HHHHHHHHh-cC--ccHHHHHHHHHHHHHHhhcc
Confidence            345778999999999999999977778999999999998       889999998 33  57788999999999999996


Q ss_pred             -CCCccchhhhhhccCCCChHHHHHHhhhcc-CCCCcCccHHHHHHHHHHhc------cCcCHHHHHHHHHHcCCCcCCC
Q 007327          415 -PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLSAYEFVESMKKKGIRVPGI  486 (608)
Q Consensus       415 -l~~st~~aar~~aSt~a~~~~av~agl~a~-Gp~hGGa~~~a~~~l~~~~~------~~~~~~~~v~~~l~~~~~ipGF  486 (608)
                       .|+|| |++|+++||++|+|+|++||++++ ||+||||+++|++||+++.+      ..++++++|++.++++++||||
T Consensus       238 g~n~St-~a~rvvaSt~sd~~sav~agi~al~GplHGGA~~~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~Gf  316 (435)
T d1csha_         238 GGNVSA-HTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGY  316 (435)
T ss_dssp             SCSHHH-HHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCcchH-HHHHHHhccccchHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCccccc
Confidence             88899 999999999999999999999998 99999999999999999843      1246789999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh------ccCCcccchhhHHHHHHHHhccc-CCCCChh
Q 007327          487 GHRIKRGDNRDKRVELLQKFARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAG-SGMFSKQ  559 (608)
Q Consensus       487 GH~vy~~~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~e~~~~~------~~~~l~~Nvd~~~a~l~~~lG~~-~~~f~~~  559 (608)
                      |||+||.  .|||+++|+++++++..++++++++.++++++.+      +.|+++||||||+|++++.|||| .+|||+ 
T Consensus       317 GH~vyk~--~DPRa~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~k~l~pNVD~~sg~~~~~lG~p~~~~~t~-  393 (435)
T d1csha_         317 GHAVLRK--TDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTV-  393 (435)
T ss_dssp             CCSSCCS--CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHH-
T ss_pred             CcccccC--CCcchHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHcCCCchhhHHH-
Confidence            9999995  5999999999999999999999999888877632      46899999999999999999997 589999 


Q ss_pred             hHHHHHhhhcchhhhHhhhhhhhhhhHHHhhhcCCCCCCCCC
Q 007327          560 EIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPW  601 (608)
Q Consensus       560 ~~~~~~p~~~~~~lf~~~R~~G~iAH~~Eq~~~~~p~~~~~~  601 (608)
                                   ||++||++||+|||+||+..+.||.||..
T Consensus       394 -------------lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~~  422 (435)
T d1csha_         394 -------------LFGVSRALGVLAQLIWSRALGFPLERPKS  422 (435)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             -------------HHHHHHHHHHHHHHHHHHhcCCCccCCCc
Confidence                         99999999999999999977778888843
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure