Citrus Sinensis ID: 007342

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------
MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLITSIGAFKVSTFL
cccccccccccEEcccccccEEEEEEccEEccEEEEcccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccHHcccccccccEEEEEEEEccEEEEEEEEEcccccccccccccccHHHHcccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEEEEcccccccccEEEEEccHHHHHHHHHHHHHcccccEEEEEEEEHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mltempevtelhpvpdahvpvmkfKFSGVSIDLLYARLSLwvipedldisqdsilqNADEqtvrslngcrvtDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQlypnavpsmLVSRFFRVYtqwrwpnpvLLCAIeegslglqvwdprrnpkdkyhlmpiitpaypcmnssynvstsTLRIMMDEFQRGHEICEAMekneadvdwdtlfepftFFEAYKNYLRIdisaenaddlrnWKGWVESRLRQLTLKIERHTynmlqchphpgdfsdkskplyCSYFmglqrkqgvpvgegeqfDIRLTVKEFKQAVSMYTlrkpgmqiSVAHVtrrnlpnfvfpggvrpsrpskgtwdsRRALERKvsshtkpgaddgrkrkqtddnVDTHLrnakchatmpsssgefregspimstissssinlqfehmdanelagsnrekvennltdsirgsrnsvevsshngkvdgpmigdprnkglsfnssnskDAEKLAIEKImsgpyvadqafplelDQLEDDLELKNQAKdfagstqnnslgscAVNIAAEATLtsmnggssssalspngglgeLEVLSANLITSIgafkvstfl
mltempevtelhpvpdahvPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEqtvrslngcrvtdqilrlvpkiqnfrtTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISaenaddlrnwKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPnfvfpggvrpsrpskgtwdsrralerkvsshtkpgaddgrkrkqtddnvdthlrnakchatmpsssgefreGSPIMSTISSSSINLQFEHMDANelagsnrekVENNltdsirgsrnsvevsshngkvdgpmigdprnkglsfnssnSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFagstqnnslgSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLItsigafkvstfl
MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGspimstissssiNLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPleldqleddlelKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMnggssssalspngglgELEVLSANLITSIGAFKVSTFL
***************DAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG********************************************************************************************************************************************************IMSGPYVADQAFPL*****************************CAVNI*************************ELEVLSANLITSIGAFKV****
*****PEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRK*******GEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVF**************************************************************************************************************************************************************************************************************************************VLSANLITSIGAFK**T*L
MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRP***********************************DDNVDTHLRNAKCHAT***********SPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTS***********PNGGLGELEVLSANLITSIGAFKVSTFL
****MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGG********************************************************************************************************************************************************************************************************************************ELEVLSANLITSIGAFKV**F*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLITSIGAFKVSTFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query607 2.2.26 [Sep-21-2011]
Q54J73809 Poly(A) polymerase OS=Dic yes no 0.652 0.489 0.457 5e-99
Q6PCL9739 Poly(A) polymerase gamma yes no 0.570 0.468 0.448 6e-89
Q9BWT3736 Poly(A) polymerase gamma yes no 0.570 0.470 0.448 1e-88
P51003745 Poly(A) polymerase alpha no no 0.573 0.467 0.463 2e-84
Q61183739 Poly(A) polymerase alpha no no 0.560 0.460 0.467 3e-84
Q9NRJ5636 Poly(A) polymerase beta O no no 0.686 0.655 0.405 4e-84
P25500739 Poly(A) polymerase alpha no no 0.560 0.460 0.467 4e-84
P51004715 Poly(A) polymerase alpha- N/A no 0.593 0.503 0.449 3e-83
Q9WVP6641 Poly(A) polymerase beta O no no 0.688 0.652 0.397 4e-83
O42617558 Poly(A) polymerase PAPalp N/A no 0.474 0.516 0.472 3e-81
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  362 bits (929), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/426 (45%), Positives = 258/426 (60%), Gaps = 30/426 (7%)

Query: 1   MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNAD 59
           +L   PE+TE   V DA VPV+   FSG+ IDL+YA+L+L  IPE+L D+  +S L+N D
Sbjct: 169 ILKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNID 228

Query: 60  EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 119
           E+++ SLNGCRVTDQIL+LVP I NFR  LRC++ WA RRG+YSN+ GFLGG++WALL A
Sbjct: 229 EKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTA 288

Query: 120 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLM 178
           RICQLYPN+ PS ++ RFF+VY  W+WP P+LLC I+EG  LG +VW+P+R   DK HLM
Sbjct: 289 RICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLM 345

Query: 179 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 238
           PIITPAYP MNS+YNVS STL++M  EF RG EI   +E  E    W  L E   FF  Y
Sbjct: 346 PIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRY 403

Query: 239 KNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK----SK 294
             Y+ ID  + N +D R W+GW+ES+LR L   +E  T  M    P+P  F++     + 
Sbjct: 404 SFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNLHKANN 462

Query: 295 P--LYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVT 349
           P  +  S+FMGL        G  +  D+   V EF   +  +   +P    M I V ++ 
Sbjct: 463 PDQICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIK 522

Query: 350 RRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRN 409
           ++ LP FV   G  P  P K T        +K SS  +P A    ++K   +N D  L +
Sbjct: 523 KKQLPAFVKDEG--PEEPVKTT--------KKRSSTGEPSA---TRKKLKSENSDNKLNS 569

Query: 410 AKCHAT 415
            K   T
Sbjct: 570 PKSPIT 575
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query607
359490984 757 PREDICTED: poly(A) polymerase-like [Viti 0.960 0.770 0.720 0.0
147795652 1097 hypothetical protein VITISV_015447 [Viti 0.960 0.531 0.720 0.0
255567792 770 Poly(A) polymerase alpha, putative [Rici 0.942 0.742 0.685 0.0
449439435 748 PREDICTED: poly(A) polymerase-like [Cucu 0.932 0.756 0.657 0.0
357521515 822 Poly(A) polymerase [Medicago truncatula] 0.955 0.705 0.615 0.0
356531174 757 PREDICTED: poly(A) polymerase-like [Glyc 0.962 0.771 0.645 0.0
356522834 757 PREDICTED: poly(A) polymerase-like [Glyc 0.889 0.713 0.658 0.0
357500153 752 Poly(A) polymerase [Medicago truncatula] 0.957 0.772 0.613 0.0
224135441512 predicted protein [Populus trichocarpa] 0.632 0.75 0.848 0.0
297850192 716 nucleotidyltransferase family protein [A 0.881 0.747 0.610 0.0
>gi|359490984|ref|XP_002279968.2| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/591 (72%), Positives = 487/591 (82%), Gaps = 8/591 (1%)

Query: 1   MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
           ML+EMPEVTELHPVPDAHVPVM+FKFSGVSIDLLYA+LSLWVIPEDLD+SQDSILQNADE
Sbjct: 133 MLSEMPEVTELHPVPDAHVPVMRFKFSGVSIDLLYAKLSLWVIPEDLDVSQDSILQNADE 192

Query: 61  QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
           QTVRSLNGCRVTDQILRLVP IQNFRTTLR MRFWAKRRGVYSNVAGFLGGINWALLVAR
Sbjct: 193 QTVRSLNGCRVTDQILRLVPNIQNFRTTLRFMRFWAKRRGVYSNVAGFLGGINWALLVAR 252

Query: 121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
           ICQLYPNA+PSMLVSRFFRVYTQWRWPNPV+LCAIEEG+LGLQVWDPR+ PKD++HLMPI
Sbjct: 253 ICQLYPNALPSMLVSRFFRVYTQWRWPNPVMLCAIEEGTLGLQVWDPRKYPKDRFHLMPI 312

Query: 181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240
           ITPAYPCMNSSYNVS+STLRIM +EF+RG+EI E ME N+A  DW TL EP+ FFEAYKN
Sbjct: 313 ITPAYPCMNSSYNVSSSTLRIMSEEFKRGNEISEVMEANKA--DWATLCEPYPFFEAYKN 370

Query: 241 YLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSY 300
           YL+I+I+AENADDLR WKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKS+P +C Y
Sbjct: 371 YLQIEIAAENADDLRKWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFHCCY 430

Query: 301 FMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG 360
           FMGLQRKQGVP  EGEQFDIRLTV EFK +V MYTL KPGM+I V HV RRN+PNFVFPG
Sbjct: 431 FMGLQRKQGVPASEGEQFDIRLTVDEFKHSVGMYTLWKPGMEIHVIHVRRRNIPNFVFPG 490

Query: 361 GVRPSRPSKGTWDSRRALERKVSSHTK-PGADDGRKRKQTDDNVDTHLRNAKCHATMPSS 419
           GVRPSRP+K   + RR LE  VS+     GA+D +KRK+ D+NV+T+ RNAKC     SS
Sbjct: 491 GVRPSRPTKVASERRRVLEPNVSTQAVLEGAEDSKKRKREDENVETNSRNAKCLVAAASS 550

Query: 420 SGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHN 479
           S E    +P++ST+++ SI  + + MD N L  + +EKVENN+   ++   NSVEV   N
Sbjct: 551 SHEVLSSNPLVSTVNACSI--KVDSMDINMLGKTRKEKVENNIEHGLKNLNNSVEVPPQN 608

Query: 480 GKVDGPMIGDPRNKGLSFNSSNSK--DAEKLAIEKIMSGPYVADQAFPLELDQLEDDLEL 537
           G+VDG +      K LS +  +    +AEK+AIEKIMSGPYV+ QAFP ELD+LEDD+E 
Sbjct: 609 GEVDGSVRCSHPIKTLSSSGGSPSSTEAEKIAIEKIMSGPYVSHQAFPGELDELEDDVEY 668

Query: 538 KNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELE 588
           KNQ KDF GST+ +S  S   N+A E  LT+ +G    + LSPNGGL ELE
Sbjct: 669 KNQVKDFTGSTKGSSAESSKANVAEEP-LTTTSGTVPCTILSPNGGLEELE 718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147795652|emb|CAN61208.1| hypothetical protein VITISV_015447 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567792|ref|XP_002524874.1| Poly(A) polymerase alpha, putative [Ricinus communis] gi|223535837|gb|EEF37498.1| Poly(A) polymerase alpha, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449439435|ref|XP_004137491.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] gi|449521033|ref|XP_004167536.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357521515|ref|XP_003631046.1| Poly(A) polymerase [Medicago truncatula] gi|355525068|gb|AET05522.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356531174|ref|XP_003534153.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356522834|ref|XP_003530048.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|357500153|ref|XP_003620365.1| Poly(A) polymerase [Medicago truncatula] gi|355495380|gb|AES76583.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224135441|ref|XP_002322074.1| predicted protein [Populus trichocarpa] gi|222869070|gb|EEF06201.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297850192|ref|XP_002892977.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338819|gb|EFH69236.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query607
TAIR|locus:2030943713 PAPS1 "poly(A) polymerase 1" [ 0.637 0.542 0.805 2.3e-174
TAIR|locus:2134113765 nPAP "nuclear poly(a) polymera 0.771 0.611 0.573 4.3e-141
TAIR|locus:2043560800 PAPS2 "poly(A) polymerase 2" [ 0.688 0.522 0.611 6.3e-140
DICTYBASE|DDB_G0288259809 papA "poly(A) polymerase" [Dic 0.644 0.483 0.460 8.3e-90
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.594 0.485 0.467 2.9e-87
UNIPROTKB|Q9BWT3736 PAPOLG "Poly(A) polymerase gam 0.602 0.497 0.433 8.1e-87
ZFIN|ZDB-GENE-030131-3507723 papola "poly(A) polymerase alp 0.612 0.514 0.450 2.4e-85
RGD|1310337739 Papolg "poly(A) polymerase gam 0.629 0.516 0.432 1.7e-84
UNIPROTKB|A5D7N5740 PAPOLG "Uncharacterized protei 0.665 0.545 0.412 5e-83
UNIPROTKB|F1SQL7741 PAPOLG "Uncharacterized protei 0.665 0.545 0.408 1.3e-82
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1694 (601.4 bits), Expect = 2.3e-174, P = 2.3e-174
 Identities = 315/391 (80%), Positives = 344/391 (87%)

Query:     1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
             ML+EMPEVTELHPVPDAHVP+M FK +GVSIDLLYA+L LWVIPEDLD+SQDSILQNADE
Sbjct:   128 MLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADE 187

Query:    61 QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
             QTVRSLNGCRVTDQILRLVP IQNFRTTLRCMRFWAKRRGVYSNV+GFLGGINWALLVAR
Sbjct:   188 QTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVAR 247

Query:   121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
             ICQLYPNA+P++LVSRFFRV+ QW WPN + LC+ +EGSLGLQVWDPR NPKD+ H+MPI
Sbjct:   248 ICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPI 307

Query:   181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240
             ITPAYPCMNSSYNVS STLRIM  EFQRG+EICEAME N+AD  WDTLFEPF FFEAYKN
Sbjct:   308 ITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKAD--WDTLFEPFAFFEAYKN 365

Query:   241 YLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSY 300
             YL+IDISA N DDLR WKGWVESRLRQLTLKIERH + ML CHPHP DF D S+PL+CSY
Sbjct:   366 YLQIDISAANVDDLRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPLHCSY 424

Query:   301 FMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG 360
             FMGLQRKQGVP  EGEQFDIR TV+EFK  V+ YTL  PGM+ISV H+ RR+LPNFVFPG
Sbjct:   425 FMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPG 484

Query:   361 GVRPSRPSKGTWDS-RRALERKVSSHTKPGA 390
             GVRPS  SKGTWDS RR+  R  S+ + P A
Sbjct:   485 GVRPSHTSKGTWDSNRRSEHRNSSTSSAPAA 515
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0043631 "RNA polyadenylation" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWT3 PAPOLG "Poly(A) polymerase gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3507 papola "poly(A) polymerase alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310337 Papolg "poly(A) polymerase gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N5 PAPOLG "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQL7 PAPOLG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query607
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 1e-148
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 1e-147
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-116
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 1e-47
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 1e-06
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information 
 Score =  430 bits (1109), Expect = e-148
 Identities = 145/232 (62%), Positives = 182/232 (78%), Gaps = 2/232 (0%)

Query: 1   MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
           +L   PEVTEL PV DA VP++KFKF G+ IDLL+A L+L  +P+DLD+  DS+L+N DE
Sbjct: 120 ILKLRPEVTELVPVEDAFVPIIKFKFDGIEIDLLFASLALPRVPDDLDLLDDSLLRNLDE 179

Query: 61  QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
           ++VRSLNGCRVTD+ILRLVP    FRT LR ++ WAKRRG+YSNV GFLGG+ WA+LVAR
Sbjct: 180 KSVRSLNGCRVTDEILRLVPNKDVFRTALRAIKLWAKRRGIYSNVLGFLGGVAWAILVAR 239

Query: 121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
           +CQLYPNA PS LV +FFR+++QW+WPNPVLL  IEEG L  +VWDPR  P D+YHLMPI
Sbjct: 240 VCQLYPNASPSTLVRKFFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPI 299

Query: 181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF 232
           ITPAYP MNS++NV+ STL+++ +EF+RG EI   +   +A   W  LFEP 
Sbjct: 300 ITPAYPSMNSTHNVTRSTLKVITEEFKRGLEITSEILLGKA--PWSDLFEPH 349

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 607
KOG2245562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 99.98
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 99.13
KOG1906514 consensus DNA polymerase sigma [Replication, recom 98.79
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.74
KOG2277596 consensus S-M checkpoint control protein CID1 and 98.64
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 97.66
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 97.42
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 97.13
TIGR03671408 cca_archaeal CCA-adding enzyme. 96.96
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 95.62
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 94.2
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 92.7
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 91.58
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 89.28
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=9e-123  Score=985.16  Aligned_cols=361  Identities=58%  Similarity=1.024  Sum_probs=344.6

Q ss_pred             CCCCCCCccceeecCCCccceEEEEECceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCC
Q 007342            1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP   80 (607)
Q Consensus         1 mL~~~p~Vtel~~V~dA~VPIIKf~~~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVP   80 (607)
                      ||+++|+||||++|+||+||||||+|+||+|||+||||++++||++|||+||++|+||||+|+||||||||||+||+|||
T Consensus       131 mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVP  210 (562)
T KOG2245|consen  131 MLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVP  210 (562)
T ss_pred             HHhcCccccccccccccccceEEEEecCeeeeeeehhcccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCceeccccccCCC
Q 007342           81 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSL  160 (607)
Q Consensus        81 n~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPnas~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g~l  160 (607)
                      |.++||.+|||||+||||||||||++||||||+|||||||+|||||||++++||.+||.+|++|.||+||+|+.+++|.+
T Consensus       211 n~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVARiCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L  290 (562)
T KOG2245|consen  211 NQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVARICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNL  290 (562)
T ss_pred             CHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHccCCCcchHHHHHHHHHHHhhccCCCceEecccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhccc
Q 007342          161 GLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN  240 (607)
Q Consensus       161 g~~vWdP~~~~~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep~~FF~~Yk~  240 (607)
                      +++|||||.|++||||+|||||||||+||||||||+||+++|++||+||++||++|+.++.  +|.+|||+++||.+|||
T Consensus       291 ~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~Ef~~g~~I~~~i~~~k~--~W~~LFE~~~FF~rYk~  368 (562)
T KOG2245|consen  291 NLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEEFKRGLEICDDIELNKL--DWSDLFELYNFFSRYKH  368 (562)
T ss_pred             CccccCCCCCCCCcceecccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHhhhhHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             EEEEEEEecChhhhcchhhhhHHHHHHHHHHHhhccCcceeeccCCCCCCCCCC-----CcEEEEEEeeeeccCCCCCCC
Q 007342          241 YLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSK-----PLYCSYFMGLQRKQGVPVGEG  315 (607)
Q Consensus       241 yL~I~vsa~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~F~~~~~-----~~~~~ffIGL~~~~~~~~~~~  315 (607)
                      ||+|+++|.++|++.+|.||||||+|+|+.+||++. .++.|||+|+.|.++..     .|...|||||.+.++      
T Consensus       369 yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~~-~i~~ahp~P~~f~~~~~~~~~~~~~~~~~igl~~~e~------  441 (562)
T KOG2245|consen  369 YLQITASAATEEDLLKWVGWVESRIRQLVLKLERNQ-VILIAHPNPKKFKDTYNCPLEEDPESLWFIGLEFDEN------  441 (562)
T ss_pred             HheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhhc-ceEEecCCcccccccccCCcccchhHhhhhccccccc------
Confidence            999999999999999999999999999999999964 67899999999997642     456789999987653      


Q ss_pred             ceechHHHHHHHHHHHH----hhccCCCC--cEEEEEEecCCCCCCCcCCCCCCCCCCCCC
Q 007342          316 EQFDIRLTVKEFKQAVS----MYTLRKPG--MQISVAHVTRRNLPNFVFPGGVRPSRPSKG  370 (607)
Q Consensus       316 ~~~DL~~~v~eF~~~V~----~~~~~~~~--m~I~Vs~Vkr~~LP~~Vf~~~~r~~~~~k~  370 (607)
                      .++||+..+++|+..|+    ++..++.|  |++.+.|+||++|+.++++.+.|..|..|.
T Consensus       442 ~~~Dlt~~iq~f~~~v~~q~~~~~~~~~g~~~~~~~~~~krr~l~~~~~~~~l~~~k~~~~  502 (562)
T KOG2245|consen  442 VKIDLTKDIQSFKKNVERQAVNLTLIKAGCDVEIDFGHVKRRSLIQTITKEFLRLCKQYKK  502 (562)
T ss_pred             ccchhhhhHHHhhhhhhhcceeeeeeecccccccccccccccccccccCHHHhhHHHhhcc
Confidence            34999999999999998    56778888  888888999999999999998887765543

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query607
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 3e-84
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 7e-84
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 2e-78
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 2e-74
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 2e-74
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 2e-74
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 1e-73
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  309 bits (791), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 166/356 (46%), Positives = 227/356 (63%), Gaps = 13/356 (3%)
Query: 7   EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSL 66
           EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +RSL
Sbjct: 142 EVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIRSL 201
Query: 67  NGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP 126
           NGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR CQLYP
Sbjct: 202 NGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYP 261
Query: 127 NAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP 186
           NA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 NAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYP 321
Query: 187 CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDI 246
             NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +  
Sbjct: 322 QQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLA 379
Query: 247 SAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYF 301
           SA        W G VES++R L   +E++ +  L     Q  P P +  DK +     + 
Sbjct: 380 SAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTMWV 438
Query: 302 MGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRNL 353
           +GL  K+     E    D+   ++ F   V    +     +  M+I+  HV R+ L
Sbjct: 439 IGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query607
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 1e-137
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 1e-130
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-09
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query607
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 99.98
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 99.96
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 99.96
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 99.96
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 99.87
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 99.78
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 99.76
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 97.0
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 95.98
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 607
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 1e-85
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 4e-83
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 6e-39
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 4e-37
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 2e-36
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-34
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 2e-19
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  261 bits (669), Expect = 1e-85
 Identities = 71/151 (47%), Positives = 107/151 (70%), Gaps = 2/151 (1%)

Query: 80  PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFR 139
           PK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LVARICQLYPNA  +++++RFF 
Sbjct: 1   PKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFI 60

Query: 140 VYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTL 199
           + ++W WP PV+L  IE+G L ++VW+P+   +D+ H MP+ITPAYP M +++N++ ST 
Sbjct: 61  ILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTK 120

Query: 200 RIMMDEFQRGHEICEAMEKNEADVDWDTLFE 230
           ++++ EF RG +I   +  N+    W  LFE
Sbjct: 121 KVILQEFVRGVQITNDIFSNKK--SWANLFE 149
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query607
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 99.97
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 99.97
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.84
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.84
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.77
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 88.41
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-63  Score=461.89  Aligned_cols=150  Identities=59%  Similarity=1.142  Sum_probs=147.3

Q ss_pred             CChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCceeccccccCC
Q 007342           80 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS  159 (607)
Q Consensus        80 Pn~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPnas~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g~  159 (607)
                      ||+++||.+|||||+|||+||||||++||||||+||||||||||+|||+++++||.+||.+|++|+||+||+|++++++.
T Consensus         1 Pn~~~Fr~~lR~IKlWAk~RGIYsn~~GflGGI~waILvArvCql~Pna~~~~ll~~FF~~ys~W~Wp~PV~l~~~~~~~   80 (150)
T d1q79a1           1 PNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN   80 (150)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCCCCCeeccCccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 007342          160 LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP  231 (607)
Q Consensus       160 lg~~vWdP~~~~~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep  231 (607)
                      +++++|||+.+++|++|+|||||||||+||||||||+||+++|++||+||++|++++..++.  +|++|||.
T Consensus        81 ~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~i~~~i~~~~~--~W~~Lfe~  150 (150)
T d1q79a1          81 LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEA  150 (150)
T ss_dssp             SCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCC
T ss_pred             CCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999998887  99999983
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure