Citrus Sinensis ID: 007396
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C6T2 | 606 | Pentatricopeptide repeat- | yes | no | 0.996 | 0.995 | 0.593 | 0.0 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.947 | 0.963 | 0.425 | 1e-134 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.945 | 0.922 | 0.381 | 1e-126 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.935 | 0.876 | 0.382 | 1e-125 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.942 | 0.893 | 0.404 | 1e-123 | |
| Q9STF3 | 657 | Pentatricopeptide repeat- | no | no | 0.927 | 0.853 | 0.403 | 1e-122 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.957 | 0.930 | 0.368 | 1e-122 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.866 | 0.732 | 0.398 | 1e-120 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.950 | 0.953 | 0.383 | 1e-120 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.953 | 0.942 | 0.369 | 1e-119 |
| >sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/608 (59%), Positives = 477/608 (78%), Gaps = 5/608 (0%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELN-LRLKEQECLTILKTCKNLEEFKKVHAHVLKWGF 59
M + +L QSLL ++ ++ PE+N KEQECL +LK C N++EFK+VHA +K
Sbjct: 1 MIKAPIL-QSLLASR-DDLTHNPEVNNFGGKEQECLYLLKRCHNIDEFKQVHARFIKLSL 58
Query: 60 FWNPFCASNLV-ATCALSHW-GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALF 117
F++ +++ V A CA S W SM+YA SIFR ID+P FDFNT+IRG+V + FEEAL
Sbjct: 59 FYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALC 118
Query: 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYG 177
YNEM +RG EPDNFT+P L KAC +L++++EG QIHG VFK+G E D+FVQNSLINMYG
Sbjct: 119 FYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYG 178
Query: 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV 237
+C ++E +SA+F++++ K+ ASWS++++A A G+WSECL LF M +E + EES +V
Sbjct: 179 RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMV 238
Query: 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297
S L AC + GAL+LG HG L+RNIS LN+IV+TSL+DMYVKCGCL+K L +F+ M +
Sbjct: 239 SALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKR 298
Query: 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357
LTYS MISGLA+HG+G+ AL +FS+M++EGLEPD VVYV VL+ACSH+GLV EG F
Sbjct: 299 NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358
Query: 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHN 417
M E ++ PT +HYGC+VDL+GRAG+L EALE IQS+PI++NDV+WR+ LS +V N
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQN 418
Query: 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVE 477
+E+G+IAA+ L +++SH+P DY+L+SN+Y++ Q W DVA+ RTE+A KGL Q+PGFS+VE
Sbjct: 419 IELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVE 478
Query: 478 VARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGH 537
+ K ++FVSQDRSHP IY+M+HQMEWQLKFEGYSPD++Q+L +VDE+EK+ERLKGH
Sbjct: 479 LKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGH 538
Query: 538 SQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDG 597
SQK+AIAF L++ GS I+IARNLRMC+DCHTYTK IS+IYEREI+VRDR RFH FK G
Sbjct: 539 SQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGG 598
Query: 598 TCSCRDYW 605
TCSC+DYW
Sbjct: 599 TCSCKDYW 606
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/581 (42%), Positives = 364/581 (62%), Gaps = 8/581 (1%)
Query: 32 QECLTILKT--CKNLEEFKKVHAHVLKWGF-FWNPFCASNLV-ATCALSHWGSMDYACSI 87
++C+ +L+T ++ + +++HA ++ G + +L+ +L M YA +
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75
Query: 88 FRQIDEP-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDNFTFPALFKACAKLQ 145
F +I++P F +NTLIRG+ + A LY EM G VEPD T+P L KA +
Sbjct: 76 FSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMA 135
Query: 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIA 205
++ G IH V + GF ++VQNSL+++Y C V A +F +M +K + +W+++I
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 206 AHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265
A NG E L L+ EMN+ K +P+ +VS+LSAC +GAL LGK H +I+
Sbjct: 196 GFAENGKPEEALALYTEMNS-KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 254
Query: 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEM 325
N+ L+D+Y +CG +E+ LF M DK ++++ +I GLA++G GKEA+ +F M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Query: 326 -LREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384
EGL P ++ +VG+L ACSH G+V EG F RM+ EY+I P ++H+GC+VDL+ RAG
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAG 374
Query: 385 MLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444
+ +A E I+SMP+Q N V+WR+LL A VH + ++ E A + Q+ +H DYVLLSN
Sbjct: 375 QVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSN 434
Query: 445 MYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQ 504
MYA QRW DV KIR +M G+ + PG SLVEV +V++F+ D+SHP D IY + +
Sbjct: 435 MYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKE 494
Query: 505 MEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRM 564
M +L+ EGY P IS V DV+E+EK + HS+K+AIAF LI + SPI + +NLR+
Sbjct: 495 MTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRV 554
Query: 565 CNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
C DCH KL+S +Y REI+VRDR RFH FK+G+CSC+DYW
Sbjct: 555 CADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/606 (38%), Positives = 350/606 (57%), Gaps = 34/606 (5%)
Query: 33 ECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGS-MDYACSIFRQI 91
E ++ L+ C EE K++HA +LK G + + + ++ C S + YA +F
Sbjct: 16 ETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGF 75
Query: 92 DEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGM 151
D P F +N +IRGF E E +L LY M + +TFP+L KAC+ L A +E
Sbjct: 76 DRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 152 QIHGHVFKVGFECDLFVQNSLINMYG-------------------------------KCE 180
QIH + K+G+E D++ NSLIN Y K
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195
Query: 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240
K++ A +F++M +K+ SW+ +I+ + + E L+LF EM N P+ L + L
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV-EPDNVSLANAL 254
Query: 241 SACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL 300
SAC LGAL+ GK H L + ++ ++ LIDMY KCG +E+ L +F+ + K
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360
++ +ISG A HG G+EA+S F EM + G++P+ + + VL+ACS+ GLV EG L F M
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374
Query: 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420
+ +Y + PT++HYGC+VDL+GRAG+L EA IQ MP++ N V+W +LL A ++H N+E+
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434
Query: 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVAR 480
GE + L I+ +H YV +N++A ++W A+ R M +G+ + PG S + +
Sbjct: 435 GEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEG 494
Query: 481 KVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRD-VDEDEKRERLKGHSQ 539
++F++ DRSHP + I M +L+ GY P++ ++L D VD+DE+ + HS+
Sbjct: 495 TTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSE 554
Query: 540 KLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTC 599
KLAI + LI G+ IRI +NLR+C DCH TKLIS IY+R+I++RDR RFH F+DG C
Sbjct: 555 KLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKC 614
Query: 600 SCRDYW 605
SC DYW
Sbjct: 615 SCGDYW 620
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/619 (38%), Positives = 361/619 (58%), Gaps = 53/619 (8%)
Query: 38 LKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS--HWGSMDYACSIFRQIDEPG 95
+ C+ + + ++HA +K G + A+ ++ CA S H +DYA IF Q+ +
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 96 AFDFNTLIRGFVKEVEFEEAL----FLYNEMFERGVEPDNFTFPALFKACAKLQALKEGM 151
F +NT+IRGF E + ++AL Y M + VEP+ FTFP++ KACAK ++EG
Sbjct: 90 CFSWNTIIRGF-SESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGK 148
Query: 152 QIHGHVFKVGFECDLFVQNSLINMYGKC-----EKVEF---------------------- 184
QIHG K GF D FV ++L+ MY C +V F
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208
Query: 185 ------------------ASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNE 226
A +F +M Q+SV SW+ +I+ ++ NG + + +++F EM
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG 268
Query: 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286
RP LVSVL A + LG+L+LG+ H + ++ ++ ++LIDMY KCG +EK
Sbjct: 269 DI-RPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 287 GLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH 346
+ +F + + +T+S MI+G A+HGQ +A+ F +M + G+ P DV Y+ +L+ACSH
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387
Query: 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWR 406
GLV EG F +M + P ++HYGC+VDL+GR+G+L EA E I +MPI+ +DV+W+
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWK 447
Query: 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466
+LL A ++ N+E+G+ A L + H YV LSNMYA W +V+++R M K
Sbjct: 448 ALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKD 507
Query: 467 LNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVD 526
+ + PG SL+++ +++FV +D SHP I M+ ++ +L+ GY P +QVL +++
Sbjct: 508 IRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLE 567
Query: 527 EDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVR 586
E++K L HS+K+A AF LI S G PIRI +NLR+C DCH+ KLIS +Y+R+I VR
Sbjct: 568 EEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVR 627
Query: 587 DRKRFHRFKDGTCSCRDYW 605
DRKRFH F+DG+CSC DYW
Sbjct: 628 DRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/594 (40%), Positives = 357/594 (60%), Gaps = 24/594 (4%)
Query: 32 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNP---FCASNLVATCALSHWGSMDYACSIF 88
Q ++ +TC ++ + K++HA L+ + P F ++ S + ++YA +F
Sbjct: 49 QRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVF 106
Query: 89 RQIDEPGAFDFNTLIRGFVKEVEF-EEALFLYNEMFERG-VEPDNFTFPALFKACAKLQA 146
I+ +F +NTLIR +V EEA LY +M ERG PD TFP + KACA +
Sbjct: 107 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 166
Query: 147 LKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAA 206
EG Q+H + K GF D++V N LI++YG C ++ A +F +M ++S+ SW+++I A
Sbjct: 167 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 226
Query: 207 HASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS-- 264
G + L+LF EM ++ + P+ + SVLSAC LG+L LG H L+R
Sbjct: 227 LVRFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 284
Query: 265 -ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFS 323
A++V+V+ SLI+MY KCG L +F+ M + +++ MI G A HG+ +EA++ F
Sbjct: 285 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 344
Query: 324 EML--REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381
M+ RE + P+ V +VG+L AC+H G VN+G FD M +Y I P ++HYGC+VDL+
Sbjct: 345 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA 404
Query: 382 RAGMLGEALELIQSMPIQQNDVVWRSLLSAS-KVHHNLEIGEIAAKNLFQINSHHPSD-- 438
RAG + EA++++ SMP++ + V+WRSLL A K ++E+ E A+N+ + S
Sbjct: 405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNG 464
Query: 439 -----YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHP 493
YVLLS +YA A RW DV +R M+ G+ + PG S +E+ ++F + D SHP
Sbjct: 465 NCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHP 524
Query: 494 AWDNIYEMIHQMEWQLKFEGYSPDISQV-LRDVDEDEKRE-RLKGHSQKLAIAFALIHLS 551
IY+ + ++ +L+ GY PD SQ L D D +E L+ HS++LAIAF LI+L
Sbjct: 525 QTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLP 584
Query: 552 QGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
+PIRI +NLR+CNDCH TKLIS ++ EIIVRDR RFH FKDG+CSC DYW
Sbjct: 585 PQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/568 (40%), Positives = 342/568 (60%), Gaps = 7/568 (1%)
Query: 43 NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTL 102
+L + +VH H+L G +PF A+ L+ S GS+DYA +F + + + +N L
Sbjct: 92 SLSDALRVHRHILDNGSDQDPFLATKLIGM--YSDLGSVDYARKVFDKTRKRTIYVWNAL 149
Query: 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACA----KLQALKEGMQIHGHVF 158
R EE L LY +M GVE D FT+ + KAC + L +G +IH H+
Sbjct: 150 FRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLT 209
Query: 159 KVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLK 218
+ G+ +++ +L++MY + V++AS +F M ++V SWSA+IA +A NG E L+
Sbjct: 210 RRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALR 269
Query: 219 LFGEMNNE-KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277
F EM E K P +VSVL AC L AL+ GK HG ++R + V ++L+ M
Sbjct: 270 TFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTM 329
Query: 278 YVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY 337
Y +CG LE G +F M D+ ++++ +IS +HG GK+A+ IF EML G P V +
Sbjct: 330 YGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTF 389
Query: 338 VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMP 397
V VL ACSH GLV EG F+ M ++ I P ++HY C+VDL+GRA L EA +++Q M
Sbjct: 390 VSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMR 449
Query: 398 IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457
+ VW SLL + ++H N+E+ E A++ LF + + +YVLL+++YA AQ W +V +
Sbjct: 450 TEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKR 509
Query: 458 IRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPD 517
++ + +GL + PG +EV RK+Y FVS D +P + I+ + ++ +K +GY P
Sbjct: 510 VKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQ 569
Query: 518 ISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISV 577
VL +++ +EK + GHS+KLA+AF LI+ S+G PIRI +NLR+C DCH +TK IS
Sbjct: 570 TKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISK 629
Query: 578 IYEREIIVRDRKRFHRFKDGTCSCRDYW 605
E+EI+VRD RFHRFK+G CSC DYW
Sbjct: 630 FMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/616 (36%), Positives = 350/616 (56%), Gaps = 37/616 (6%)
Query: 26 NLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGS----- 80
LR K + L +L++C + + K +H +L+ + F AS L+A C +
Sbjct: 8 TLRFKHPK-LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNL 66
Query: 81 MDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKA 140
+ YA IF QI P F FN LIR F E +A Y +M + + PDN TFP L KA
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126
Query: 141 CAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASW 200
++++ + G Q H + + GF+ D++V+NSL++MY C + A IF QM + V SW
Sbjct: 127 SSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186
Query: 201 SAIIAAHASNGLWSECLKLFGEM--NNEKCWR---------------------------- 230
++++A + G+ ++F EM N W
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290
E+++VSV+S+C HLGAL+ G+ + ++++ +N+I+ T+L+DM+ +CG +EK + +
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306
Query: 291 FRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLV 350
F + + L++S +I GLA+HG +A+ FS+M+ G P DV + VLSACSH GLV
Sbjct: 307 FEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLV 366
Query: 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLS 410
+GL ++ MK ++ I P ++HYGC+VD++GRAG L EA I M ++ N + +LL
Sbjct: 367 EKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLG 426
Query: 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQS 470
A K++ N E+ E L ++ H YVLLSN+YA A +W + +R M K + +
Sbjct: 427 ACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKP 486
Query: 471 PGFSLVEVARKVYKF-VSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDE 529
PG+SL+E+ K+ KF + D+ HP I ++ +++ GY + DVDE+E
Sbjct: 487 PGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEE 546
Query: 530 KRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRK 589
K + HS+KLAIA+ ++ G+ IRI +NLR+C DCHT TKLIS +Y RE+IVRDR
Sbjct: 547 KESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRN 606
Query: 590 RFHRFKDGTCSCRDYW 605
RFH F++G CSCRDYW
Sbjct: 607 RFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/525 (39%), Positives = 321/525 (61%), Gaps = 1/525 (0%)
Query: 81 MDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKA 140
+D +F + +NT+I G+ + +E+AL + EM ++PD+FT ++
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 141 CAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASW 200
++ + +G +IHG+V + G + D+++ +SL++MY K ++E + +F ++ + SW
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 201 SAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLI 260
++++A + NG ++E L+LF +M K +P SV+ AC HL L LGK HG ++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKV-KPGAVAFSSVIPACAHLATLHLGKQLHGYVL 370
Query: 261 RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALS 320
R N+ + ++L+DMY KCG ++ +F M +++++ +I G A+HG G EA+S
Sbjct: 371 RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVS 430
Query: 321 IFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380
+F EM R+G++P+ V +V VL+ACSH GLV+E F+ M Y + ++HY V DL+
Sbjct: 431 LFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 490
Query: 381 GRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440
GRAG L EA I M ++ VW +LLS+ VH NLE+ E A+ +F ++S + YV
Sbjct: 491 GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYV 550
Query: 441 LLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYE 500
L+ NMYA RW ++AK+R M KGL + P S +E+ K + FVS DRSHP+ D I E
Sbjct: 551 LMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINE 610
Query: 501 MIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIAR 560
+ + Q++ EGY D S VL DVDE+ KRE L GHS++LA+AF +I+ G+ IR+ +
Sbjct: 611 FLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTK 670
Query: 561 NLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
N+R+C DCH K IS I EREIIVRD RFH F G CSC DYW
Sbjct: 671 NIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/579 (38%), Positives = 348/579 (60%), Gaps = 4/579 (0%)
Query: 29 LKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHW-GSMDYACSI 87
+ Q + ++ C +L E ++ A+ +K F A L+ C S SM YA +
Sbjct: 27 VNTQNPILLISKCNSLRELMQIQAYAIKSHIEDVSFVA-KLINFCTESPTESSMSYARHL 85
Query: 88 FRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL 147
F + EP FN++ RG+ + E L+ E+ E G+ PDN+TFP+L KACA +AL
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145
Query: 148 KEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAH 207
+EG Q+H K+G + +++V +LINMY +CE V+ A +F ++ + V ++A+I +
Sbjct: 146 EEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGY 205
Query: 208 ASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALN 267
A +E L LF EM K +P E L+SVLS+C LG+LDLGK H ++
Sbjct: 206 ARRNRPNEALSLFREMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327
V V T+LIDM+ KCG L+ + +F M K +S MI A HG+ ++++ +F M
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324
Query: 328 EGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLG 387
E ++PD++ ++G+L+ACSH G V EG F +M ++ IVP+++HYG +VDL+ RAG L
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLE 384
Query: 388 EALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447
+A E I +PI ++WR LL+A H+NL++ E ++ +F+++ H DYV+LSN+YA
Sbjct: 385 DAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444
Query: 448 RAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEW 507
R ++W V +R M + + PG S +EV V++F S D A ++ + +M
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 504
Query: 508 QLKFEGYSPDISQVLR-DVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCN 566
+LK GY PD S V+ ++++ EK L+ HS+KLAI F L++ G+ IR+ +NLR+C
Sbjct: 505 ELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCR 564
Query: 567 DCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
DCH KLIS+I+ R++++RD +RFH F+DG CSC D+W
Sbjct: 565 DCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/611 (36%), Positives = 352/611 (57%), Gaps = 34/611 (5%)
Query: 28 RLKEQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSI 87
R+ + + +L + +E +++HA + G + + V ALS +DYA I
Sbjct: 3 RIGKHPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQI 62
Query: 88 FRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG--VEPDNFTFPALFKACAKLQ 145
+ ++P F N++IR K E++ Y + G ++PDN+T L +AC L+
Sbjct: 63 LDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLR 122
Query: 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMY----------------------------- 176
+ G+Q+HG + GF+ D VQ LI++Y
Sbjct: 123 MRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVT 182
Query: 177 --GKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES 234
+C V FA +F+ M ++ +W+A+I+ +A G E L +F M E +
Sbjct: 183 ACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGV-KVNGV 241
Query: 235 ILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294
++SVLSACT LGALD G+ H + RN + V + T+L+D+Y KCG +EK + +F M
Sbjct: 242 AMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGM 301
Query: 295 ADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGL 354
+K T+S ++GLAM+G G++ L +FS M ++G+ P+ V +V VL CS G V+EG
Sbjct: 302 EEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQ 361
Query: 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKV 414
FD M+ E+ I P ++HYGC+VDL RAG L +A+ +IQ MP++ + VW SLL AS++
Sbjct: 362 RHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRM 421
Query: 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFS 474
+ NLE+G +A+K + ++ + + YVLLSN+YA + W +V+ +R M SKG+ + PG S
Sbjct: 422 YKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCS 481
Query: 475 LVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERL 534
++EV +V++F D+SHP + I + + +L+ GY D + V+ D+DE+EK + L
Sbjct: 482 VMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDAL 541
Query: 535 KGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRF 594
HS+K AIAF ++ L + PIRI +NLR+C DCH + +IS I+ REIIVRDR RFH F
Sbjct: 542 CLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHF 601
Query: 595 KDGTCSCRDYW 605
KDG CSC +W
Sbjct: 602 KDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 225427070 | 605 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.705 | 0.0 | |
| 356496056 | 605 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.704 | 0.0 | |
| 224139038 | 559 | predicted protein [Populus trichocarpa] | 0.923 | 1.0 | 0.759 | 0.0 | |
| 356496086 | 605 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.699 | 0.0 | |
| 356529748 | 604 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 1.0 | 0.700 | 0.0 | |
| 449436862 | 606 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.998 | 0.691 | 0.0 | |
| 147811587 | 562 | hypothetical protein VITISV_005974 [Viti | 0.928 | 1.0 | 0.715 | 0.0 | |
| 357484833 | 572 | Pentatricopeptide repeat-containing prot | 0.930 | 0.984 | 0.696 | 0.0 | |
| 297851626 | 607 | pentatricopeptide repeat-containing prot | 0.998 | 0.995 | 0.603 | 0.0 | |
| 15222513 | 606 | pentatricopeptide repeat-containing prot | 0.996 | 0.995 | 0.593 | 0.0 |
| >gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Vitis vinifera] gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/605 (70%), Positives = 517/605 (85%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFF 60
M RTSVLHQ+ +L E+PP+ PEL+ +L E+EC+++LK C N+EEFK+ HA +LK G F
Sbjct: 1 MIRTSVLHQTHVLVSREDPPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLF 60
Query: 61 WNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYN 120
+ FCASNLVATCALS WGSMDYACSIFRQ+DE G+F FNT++RG VK++ EEAL Y
Sbjct: 61 GDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYK 120
Query: 121 EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180
EM ERGV+PDNFT+P L KACA+L A++EGMQ+H H+ K+G E D+FVQNSLI+MYGKC
Sbjct: 121 EMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCG 180
Query: 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240
++ A+F+QM+++SVASWSA+I AHAS G+WS+CL+L G+M+NE WR EESILVSVL
Sbjct: 181 EIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVL 240
Query: 241 SACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL 300
SACTHLGALDLG+ HG L+RN+S LNVIVETSLI+MY+KCG L KG+CLF+ MA K +L
Sbjct: 241 SACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKL 300
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360
+YSVMISGLAMHG G+E L IF+EML +GLEPDD+VYVGVL+ACSHAGLV EGL CF+RM
Sbjct: 301 SYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRM 360
Query: 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420
KLE+ I PT+QHYGC+VDLMGRAG + EALELI+SMP++ NDV+WRSLLSASKVH+NL+
Sbjct: 361 KLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQA 420
Query: 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVAR 480
GEIAAK LF+++S SDYV+LSNMYA+AQRW DVAK RT M SKGL+Q PGFSLVEV R
Sbjct: 421 GEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKR 480
Query: 481 KVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQK 540
K+++FVSQD HP +++YEM++QMEWQLKFEGYSPD +QVL DVDE+EK++RL GHSQK
Sbjct: 481 KMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQK 540
Query: 541 LAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCS 600
LAIA+ALIH SQGSPIRI RNLRMCNDCHTYTKLIS+I++REI VRDR RFH FKDG CS
Sbjct: 541 LAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACS 600
Query: 601 CRDYW 605
CRDYW
Sbjct: 601 CRDYW 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/605 (70%), Positives = 510/605 (84%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFF 60
M+ TSVL QS LL+ P PP+ ELN + EQ L++LK CK++EEFK+VHAH+LK G F
Sbjct: 1 MSGTSVLCQSHLLSLPNSPPQSSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLF 60
Query: 61 WNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYN 120
++ FC SNLVA+CALS WGSM+YACSIF QI+EPG+F++NT+IRG V ++ EEAL LY
Sbjct: 61 YDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYV 120
Query: 121 EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180
EM ERG+EPDNFT+P + KAC+ L ALKEG+QIH HVFK G E D+FVQN LI+MYGKC
Sbjct: 121 EMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCG 180
Query: 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240
+E A +F+QMD+KSVASWS+II AHAS +W ECL L G+M+ E R EESILVS L
Sbjct: 181 AIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSAL 240
Query: 241 SACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL 300
SACTHLG+ +LG+C HG L+RNIS LNV+V+TSLIDMYVKCG LEKGLC+F+ MA K +
Sbjct: 241 SACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRY 300
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360
+Y+VMI+GLA+HG+G+EA+ +FS+ML EGL PDDVVYVGVLSACSHAGLVNEGL CF+RM
Sbjct: 301 SYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRM 360
Query: 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420
+ E+ I PT+QHYGC+VDLMGRAGML EA +LI+SMPI+ NDVVWRSLLSA KVHHNLEI
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 420
Query: 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVAR 480
GEIAA+N+F++N H+P DY++L+NMYARA++W +VA+IRTEMA K L Q+PGFSLVE R
Sbjct: 421 GEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANR 480
Query: 481 KVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQK 540
VYKFVSQD+S P + IY+MI QMEWQLKFEGY+PD+SQVL DVDEDEKR+RLK HSQK
Sbjct: 481 NVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 540
Query: 541 LAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCS 600
LAIAFALI S+GSPIRI+RNLRMCNDCHTYTK ISVIYEREI VRDR RFH FKDGTCS
Sbjct: 541 LAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCS 600
Query: 601 CRDYW 605
C+DYW
Sbjct: 601 CKDYW 605
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa] gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/562 (75%), Positives = 490/562 (87%), Gaps = 3/562 (0%)
Query: 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLI 103
+EEFK+VHA VLKW N FCASNLVATCALS WGSMDYACSIFRQID+PG F+FNT+I
Sbjct: 1 MEEFKQVHAQVLKWE---NSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57
Query: 104 RGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFE 163
RG+V + E ALFLY EM ERGVE DNFT+PALFKACA L++++EGMQIHG++FK G E
Sbjct: 58 RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117
Query: 164 CDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223
DLFVQNSLINMYGKC K+E + ++F+ MD++ VASWSAIIAAHAS G+WSECL +FGEM
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177
Query: 224 NNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283
+ E RPEESILVSVLSACTHLGALDLG+CTH +L+RNI +NVIV+TSLIDMYVKCGC
Sbjct: 178 SREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGC 237
Query: 284 LEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343
+EKGL LF+ M K QL+YSVMI+GLAMHG+G EAL +FS+ML EGL+PDDVVY+GVLSA
Sbjct: 238 IEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSA 297
Query: 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDV 403
C+HAGLV+EGL CF+RMKLE+ I PT+QHYGC+V LMGRAGML +ALE I+SMPI+ N+V
Sbjct: 298 CNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEV 357
Query: 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463
VWR LLSA K HHNLEIGEIAAK+L ++NS +P DYV+LSNMYARA+RW DVAKIRTEMA
Sbjct: 358 VWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMA 417
Query: 464 SKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLR 523
KG Q+PGFSLV+V RK+YKFVSQD SHP +YEMIHQMEWQLKFEGYSPD SQVL
Sbjct: 418 RKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLF 477
Query: 524 DVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREI 583
DVDE+EKR+RLK HSQKLA+AFALIH SQG+PIRIARNLRMCNDCHTYTKLISVIY+REI
Sbjct: 478 DVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREI 537
Query: 584 IVRDRKRFHRFKDGTCSCRDYW 605
VRDR RFH FKDGTCSCRDYW
Sbjct: 538 TVRDRNRFHHFKDGTCSCRDYW 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/605 (69%), Positives = 504/605 (83%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFF 60
M+ TSVL QS LL+ P P + ELN + EQ L++LK CK++EEFKKVHAH+LK G F
Sbjct: 1 MSGTSVLCQSHLLSLPNSPLQSSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLF 60
Query: 61 WNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYN 120
++ FC SNLVA+CALS WGSM+YACSIFRQI+EPG+F++NT+IRG V ++ EEAL LY
Sbjct: 61 YDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYV 120
Query: 121 EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180
EM ERG+EPDNFT+P + KAC+ L ALKEG+QIH HVF G E D+FVQN LI+MYGKC
Sbjct: 121 EMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCG 180
Query: 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240
+E A +F+QMD+KSVASWS+II AHAS +W ECL L G+M+ E R EESILVS L
Sbjct: 181 AIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSAL 240
Query: 241 SACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL 300
SACTHLG+ +LG+C HG L+RNIS LNV+V+TSLIDMYVKCG LEKGLC+F+ MA K +
Sbjct: 241 SACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRY 300
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360
+Y+VMI+GLA+HG+G+EAL +FS+ML EGL PDDVVYVGVLSACSHAGLV EG CF+RM
Sbjct: 301 SYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRM 360
Query: 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420
+ E+ I PT+QHYGC+VDLMGRAGML EA +LI+SMPI+ NDVVWRSLLSA KVHHNLEI
Sbjct: 361 QFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 420
Query: 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVAR 480
GEIAA N+F++N H+P DY++L+NMYARAQ+W +VA+IRTEM K L Q+PGFSLVE R
Sbjct: 421 GEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANR 480
Query: 481 KVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQK 540
VYKFVSQD+S P + IY+MI QMEWQLKFEGY+PD+SQVL DVDEDEKR+RLK HSQK
Sbjct: 481 NVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 540
Query: 541 LAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCS 600
LAIAFALI S+GSP+RI+RNLRMCNDCHTYTK ISVIYEREI VRD RFH FKDGTCS
Sbjct: 541 LAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCS 600
Query: 601 CRDYW 605
C+DYW
Sbjct: 601 CKDYW 605
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/605 (70%), Positives = 506/605 (83%), Gaps = 1/605 (0%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGFF 60
M+ TSVL QS L+ P PP+ ELN + Q L++LK CK++EEFK+VHAH+LK G F
Sbjct: 1 MSWTSVLCQSHFLSLPNNPPQSSELNAKFNVQG-LSLLKRCKSMEEFKQVHAHILKLGLF 59
Query: 61 WNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYN 120
++ FC SNLVATCALS WGSM+YACSIFRQI+EPG+F++NT+IRG V + EEAL LY
Sbjct: 60 YDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYV 119
Query: 121 EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180
EM ERG+EPDNFT+P + KAC+ L ALKEG+QIH HVFK G E D+FVQN LINMYGKC
Sbjct: 120 EMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCG 179
Query: 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240
+E AS +F+QMD+KSVASWS+II AHAS +W ECL L G+M+ E R EESILVS L
Sbjct: 180 AIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSAL 239
Query: 241 SACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL 300
SACTHLG+ + G+C HG L+RNIS LNV V+TSLIDMYVK G LEKGLC+F+ MA K +
Sbjct: 240 SACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRY 299
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360
+Y+V+I+GLA+HG+G+EALS+FS+ML EGL PDDVVYVGVLSACSHAGLVNEGL CF+R+
Sbjct: 300 SYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRL 359
Query: 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420
+ E++I PT+QHYGC+VDLMGRAGML A +LI+SMPI+ NDVVWRSLLSA KVHHNLEI
Sbjct: 360 QFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEI 419
Query: 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVAR 480
GEIAA+N+F++N H+P DY++L+NMYARA++W DVA+IRTEMA K L Q+PGFSLVE R
Sbjct: 420 GEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANR 479
Query: 481 KVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQK 540
VYKFVSQD+S P + IY+MI QMEWQLKFEGY+PD+SQVL DVDEDEKR+RLK HSQK
Sbjct: 480 NVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQK 539
Query: 541 LAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCS 600
LAIAFALI S+GS IRI+RN+RMCNDCHTYTK ISVIYEREI VRDR RFH FKDGTCS
Sbjct: 540 LAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCS 599
Query: 601 CRDYW 605
C+DYW
Sbjct: 600 CKDYW 604
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Cucumis sativus] gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/606 (69%), Positives = 507/606 (83%), Gaps = 1/606 (0%)
Query: 1 MTRTSVL-HQSLLLTQPEEPPKGPELNLRLKEQECLTILKTCKNLEEFKKVHAHVLKWGF 59
M TSVL + LL + P ELNL+ KEQE L ++K CK+LEEFK+VH +LK+G
Sbjct: 1 MMGTSVLNYNHHLLPSKDLPQSSSELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGL 60
Query: 60 FWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLY 119
F + FC+S+++ATCALS W SMDYACSIF+Q+DEP FDFNT+IRG+V + FE A++LY
Sbjct: 61 FLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLY 120
Query: 120 NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179
N+M +R VEPDNFT+P + KACA+L ++EGMQIHGHVFK+G E D++VQNSLINMYGKC
Sbjct: 121 NDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKC 180
Query: 180 EKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV 239
+E + AIF++M+QKSVASWSAIIAAHAS +W ECL LF +M+ E CWR EESILV+V
Sbjct: 181 RDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNV 240
Query: 240 LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ 299
LSACTHLGA LG+C HGSL++NI+ LNV V TSL+DMYVKCG L+KGLCLF+ M K Q
Sbjct: 241 LSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQ 300
Query: 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDR 359
L+YSV+ISGL +HG G++AL IFSEM+ EGLEPDDV YV VLSACSH+GLV+EGL FD+
Sbjct: 301 LSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDK 360
Query: 360 MKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLE 419
MK EYRI PT+QHYGC+VDL GRAG+L EA +L+QSMPI+ NDV+WRSLLSA KVH NL+
Sbjct: 361 MKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLK 420
Query: 420 IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVA 479
+GEIAA+NLF+++SH+PSDY++LSNMYARAQ+W + AKIRT+M ++GL Q+PG+SLVEV
Sbjct: 421 LGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVK 480
Query: 480 RKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQ 539
KVYKFVSQD+S+ NIY+MIHQMEWQL+FEGY PD SQV+ DVDE+EK ERLKGHSQ
Sbjct: 481 SKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQ 540
Query: 540 KLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTC 599
KLAIAFALIH SQGS IRI RNLRMCNDCH+YTKL+S+IYEREI VRDR RFH FKDG C
Sbjct: 541 KLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNC 600
Query: 600 SCRDYW 605
SCRDYW
Sbjct: 601 SCRDYW 606
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/562 (71%), Positives = 485/562 (86%)
Query: 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLI 103
+EEFK+ HA +LK G F + FCASNLVATCALS WGSMDYACSIFRQ+DEPG+F+FNT++
Sbjct: 1 MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60
Query: 104 RGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFE 163
RG VK++ EEAL Y EM ERGV+PDNFT+P L KACA+L A++EGMQ+H H+ K+G E
Sbjct: 61 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120
Query: 164 CDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223
D+FVQNSLI+MYGKC ++ A+F+QM+++SVASWSA+I AHAS G+WS+CL+L G+M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180
Query: 224 NNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283
+NE WR EESILVSVLSACTHLGALDLG+ HG L+RN+S LNVIVETSLI+MY+KCG
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240
Query: 284 LEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343
L KG+CLF+ MA K +L+YSVMISGLAMHG G+E L IF+EML +GLEPDD+VYVGVL+A
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300
Query: 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDV 403
CSHAGLV EGL CF+RMKLE+ I PT+QHYGC+VDLMGRAG + EALELI+SMP++ NDV
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 360
Query: 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463
+WRSLLSASKVH+NL+ GEIAAK LF+++S SDYV+LSNMYA+AQRW DVA+ RT M
Sbjct: 361 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMF 420
Query: 464 SKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLR 523
SKGL+Q PGFSLVEV RK+++FVSQD HP +++YEM++QMEWQLKFEGY PD +QVL
Sbjct: 421 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLC 480
Query: 524 DVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREI 583
DVDE+EK++RL GHSQKLAIA+ALIH SQGSP+RI RNLRMCNDCHTYTKLIS+I++REI
Sbjct: 481 DVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREI 540
Query: 584 IVRDRKRFHRFKDGTCSCRDYW 605
VRDR RFH FKDG CSCRDYW
Sbjct: 541 TVRDRHRFHHFKDGACSCRDYW 562
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/563 (69%), Positives = 474/563 (84%)
Query: 43 NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTL 102
++EEFK+VHAHVLK G F++ FC SNLVATCAL+ WGSMDYACSIF QIDEP +FD+NT+
Sbjct: 10 HMEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTM 69
Query: 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGF 162
IRG V +++ EEAL LY +M ERGVEPD FT+P + KAC+ L + EG+Q+HGHVFK+G
Sbjct: 70 IRGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGL 129
Query: 163 ECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGE 222
E D+ VQNSLINMYGKC +++ A +F MD+KSVASWSAII AHA +W+ECL L G+
Sbjct: 130 EGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGK 189
Query: 223 MNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282
M++E R EES LV+VLSACTHLG+ DLGKC HG L+RNIS LNV+V+TSLIDMYVK G
Sbjct: 190 MSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSG 249
Query: 283 CLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342
CLEKGL +F+ M++K + +Y+VMISGLA+HG+GKEAL +FSEM+ EGL PDDVVYVGV S
Sbjct: 250 CLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFS 309
Query: 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQND 402
ACSHAGLV EGL CF M+ E++I PTVQHYGC+VDL+GR GML EA ELI+SM I+ ND
Sbjct: 310 ACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPND 369
Query: 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEM 462
V+WRSLLSA KVHHNLEIG+IAA+NLF +N ++ DY++L+NMYA+AQ+W DVAKIRT++
Sbjct: 370 VIWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKL 429
Query: 463 ASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVL 522
A + L Q+PGFSL+E RKVYKFVSQD+S P W+ IYEMIHQMEWQLKFEGY PD SQVL
Sbjct: 430 AERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVL 489
Query: 523 RDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYERE 582
DVD++EK+ERLK HSQKLAIAF LIH S+GSP+RI RNLRMC+DCHTYTK IS+IYERE
Sbjct: 490 LDVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYERE 549
Query: 583 IIVRDRKRFHRFKDGTCSCRDYW 605
I VRDR RFH FK+G+CSC+DYW
Sbjct: 550 ITVRDRLRFHHFKNGSCSCKDYW 572
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/608 (60%), Positives = 473/608 (77%), Gaps = 4/608 (0%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELN-LRLKEQECLTILKTCKNLEEFKKVHAHVLKWGF 59
M +T + QSLL ++ ++ PE+N KEQECL +LK C N++EFK+VHA +K
Sbjct: 1 MIKTPTILQSLLASR-DDFTHNPEVNNCGGKEQECLYLLKRCNNIDEFKQVHARFIKLSL 59
Query: 60 FWNPFCASNLV-ATCALSHW-GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALF 117
F + +++ V A CA S W SM+YA SIFR ID+P FDF T+IRG+V E+ FE AL
Sbjct: 60 FCSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALC 119
Query: 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYG 177
YNEM ERG+EPDNFT+P L KAC +L+A++EG QIHGHVFK+G E D+FVQNSLINMYG
Sbjct: 120 FYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYG 179
Query: 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV 237
+C ++E +S +F++++ KS ASWS++ +A G+WSECL LF EM E + EES +V
Sbjct: 180 RCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMV 239
Query: 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297
S LSAC + GAL+LG HG L+RNIS LN+IV+TSL+DMYVKCGC++ L +F+ M +
Sbjct: 240 SALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKR 299
Query: 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357
LTYS MISG A+HG+G+ AL +FSEM++EGLEPD VVYV +L+ACSH+GLV EG F
Sbjct: 300 NNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVF 359
Query: 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHN 417
M E ++ PT +HYGC+VDL+GRAG+L EALE IQS+PI+QNDVVWRS LS +VH N
Sbjct: 360 GEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEQNDVVWRSFLSQCRVHQN 419
Query: 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVE 477
+E+G+IAA+ L ++ SH+P DY+L+SNMY++A W DVA+ RTE+A KGL Q+PGFS V+
Sbjct: 420 IELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVK 479
Query: 478 VARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGH 537
V K ++FVSQDRSHP IY+M+HQMEWQLKFEGYSPD++Q+L +VDE+EK+ERLKGH
Sbjct: 480 VKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGH 539
Query: 538 SQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDG 597
SQK+AIAFAL++ GS I+IARNLRMC+DCHTYTK IS+IYEREI+VRDR RFH FK G
Sbjct: 540 SQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGG 599
Query: 598 TCSCRDYW 605
TCSC+DYW
Sbjct: 600 TCSCKDYW 607
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana] gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/608 (59%), Positives = 477/608 (78%), Gaps = 5/608 (0%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELN-LRLKEQECLTILKTCKNLEEFKKVHAHVLKWGF 59
M + +L QSLL ++ ++ PE+N KEQECL +LK C N++EFK+VHA +K
Sbjct: 1 MIKAPIL-QSLLASR-DDLTHNPEVNNFGGKEQECLYLLKRCHNIDEFKQVHARFIKLSL 58
Query: 60 FWNPFCASNLV-ATCALSHW-GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALF 117
F++ +++ V A CA S W SM+YA SIFR ID+P FDFNT+IRG+V + FEEAL
Sbjct: 59 FYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALC 118
Query: 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYG 177
YNEM +RG EPDNFT+P L KAC +L++++EG QIHG VFK+G E D+FVQNSLINMYG
Sbjct: 119 FYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYG 178
Query: 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV 237
+C ++E +SA+F++++ K+ ASWS++++A A G+WSECL LF M +E + EES +V
Sbjct: 179 RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMV 238
Query: 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297
S L AC + GAL+LG HG L+RNIS LN+IV+TSL+DMYVKCGCL+K L +F+ M +
Sbjct: 239 SALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKR 298
Query: 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357
LTYS MISGLA+HG+G+ AL +FS+M++EGLEPD VVYV VL+ACSH+GLV EG F
Sbjct: 299 NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358
Query: 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHN 417
M E ++ PT +HYGC+VDL+GRAG+L EALE IQS+PI++NDV+WR+ LS +V N
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQN 418
Query: 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVE 477
+E+G+IAA+ L +++SH+P DY+L+SN+Y++ Q W DVA+ RTE+A KGL Q+PGFS+VE
Sbjct: 419 IELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVE 478
Query: 478 VARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGH 537
+ K ++FVSQDRSHP IY+M+HQMEWQLKFEGYSPD++Q+L +VDE+EK+ERLKGH
Sbjct: 479 LKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGH 538
Query: 538 SQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDG 597
SQK+AIAF L++ GS I+IARNLRMC+DCHTYTK IS+IYEREI+VRDR RFH FK G
Sbjct: 539 SQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGG 598
Query: 598 TCSCRDYW 605
TCSC+DYW
Sbjct: 599 TCSCKDYW 606
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.996 | 0.995 | 0.587 | 4.2e-198 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.947 | 0.963 | 0.419 | 8.5e-120 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.719 | 0.676 | 0.417 | 1.2e-119 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.942 | 0.893 | 0.395 | 5.3e-111 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.869 | 0.709 | 0.398 | 1.6e-109 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.925 | 0.852 | 0.386 | 1.9e-108 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.945 | 0.948 | 0.378 | 4.9e-108 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.933 | 0.634 | 0.395 | 5.1e-106 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.876 | 0.608 | 0.381 | 5.1e-106 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.727 | 0.559 | 0.412 | 6.5e-106 |
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
Identities = 357/608 (58%), Positives = 468/608 (76%)
Query: 1 MTRTSVLHQSLLLTQPEEPPKGPELN-LRLKEQECLTILKTCKNLEEFKKVHAHVLKWGF 59
M + +L QSLL ++ ++ PE+N KEQECL +LK C N++EFK+VHA +K
Sbjct: 1 MIKAPIL-QSLLASR-DDLTHNPEVNNFGGKEQECLYLLKRCHNIDEFKQVHARFIKLSL 58
Query: 60 FWNP-FCASNLVATCALSHW-GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALF 117
F++ F AS+++A CA S W SM+YA SIFR ID+P FDFNT+IRG+V + FEEAL
Sbjct: 59 FYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALC 118
Query: 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYG 177
YNEM +RG EPDNFT+P L KAC +L++++EG QIHG VFK+G E D+FVQNSLINMYG
Sbjct: 119 FYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYG 178
Query: 178 KCEKVEFASAIFKQMDQKXXXXXXXXXXXXXXNGLWSECLKLFGEMNNEKCWRPEESILV 237
+C ++E +SA+F++++ K G+WSECL LF M +E + EES +V
Sbjct: 179 RCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMV 238
Query: 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297
S L AC + GAL+LG HG L+RNIS LN+IV+TSL+DMYVKCGCL+K L +F+ M +
Sbjct: 239 SALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKR 298
Query: 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357
LTYS MISGLA+HG+G+ AL +FS+M++EGLEPD VVYV VL+ACSH+GLV EG F
Sbjct: 299 NNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVF 358
Query: 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHN 417
M E ++ PT +HYGC+VDL+GRAG+L EALE IQS+PI++NDV+WR+ LS +V N
Sbjct: 359 AEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQN 418
Query: 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVE 477
+E+G+IAA+ L +++SH+P DY+L+SN+Y++ Q W DVA+ RTE+A KGL Q+PGFS+VE
Sbjct: 419 IELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVE 478
Query: 478 VARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGH 537
+ K ++FVSQDRSHP IY+M+HQMEWQLKFEGYSPD++Q+L +VDE+EK+ERLKGH
Sbjct: 479 LKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGH 538
Query: 538 SQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDG 597
SQK+AIAF L++ GS I+IARNLRMC+DCHTYTK IS+IYEREI+VRDR RFH FK G
Sbjct: 539 SQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGG 598
Query: 598 TCSCRDYW 605
TCSC+DYW
Sbjct: 599 TCSCKDYW 606
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 244/581 (41%), Positives = 356/581 (61%)
Query: 32 QECLTILKT--CKNLEEFKKVHAHVLKWGF-FWNPFCASNLVA-TCALSHWGSMDYACSI 87
++C+ +L+T ++ + +++HA ++ G + +L+ +L M YA +
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKV 75
Query: 88 FRQIDEP-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDNFTFPALFKACAKLQ 145
F +I++P F +NTLIRG+ + A LY EM G VEPD T+P L KA +
Sbjct: 76 FSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMA 135
Query: 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXX 205
++ G IH V + GF ++VQNSL+++Y C V A +F +M +K
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 206 XXXXNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265
NG E L L+ EMN+ K +P+ +VS+LSAC +GAL LGK H +I+
Sbjct: 196 GFAENGKPEEALALYTEMNS-KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 254
Query: 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEM 325
N+ L+D+Y +CG +E+ LF M DK ++++ +I GLA++G GKEA+ +F M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Query: 326 -LREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384
EGL P ++ +VG+L ACSH G+V EG F RM+ EY+I P ++H+GC+VDL+ RAG
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAG 374
Query: 385 MLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444
+ +A E I+SMP+Q N V+WR+LL A VH + ++ E A + Q+ +H DYVLLSN
Sbjct: 375 QVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSN 434
Query: 445 MYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQ 504
MYA QRW DV KIR +M G+ + PG SLVEV +V++F+ D+SHP D IY + +
Sbjct: 435 MYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKE 494
Query: 505 MEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRM 564
M +L+ EGY P IS V DV+E+EK + HS+K+AIAF LI + SPI + +NLR+
Sbjct: 495 MTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRV 554
Query: 565 CNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
C DCH KL+S +Y REI+VRDR RFH FK+G+CSC+DYW
Sbjct: 555 CADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 183/438 (41%), Positives = 268/438 (61%)
Query: 170 NSLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXXXXXXNGLWSECLKLFGEMNNEKCW 229
N ++ Y K ++E A IF +M + NG ++E F E+
Sbjct: 207 NVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGM- 265
Query: 230 RPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLC 289
P E L VLSAC+ G+ + GK HG + + + V V +LIDMY +CG +
Sbjct: 266 SPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARL 325
Query: 290 LFRMMADK-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG 348
+F M +K C ++++ MI+GLAMHGQG+EA+ +F+EM G+ PD + ++ +L ACSHAG
Sbjct: 326 VFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAG 385
Query: 349 LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSL 408
L+ EG F MK Y I P ++HYGC+VDL GR+G L +A + I MPI +VWR+L
Sbjct: 386 LIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTL 445
Query: 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468
L A H N+E+ E + L +++ ++ D VLLSN YA A +W DVA IR M + +
Sbjct: 446 LGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIK 505
Query: 469 QSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFE-GYSPDISQVLRDVDE 527
++ +SLVEV + +YKF + ++ +E + ++ +LK E GY+P+++ L DV+E
Sbjct: 506 KTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEE 565
Query: 528 DEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRD 587
+EK +++ HS+KLA+AFAL LS+G+ IRI +NLR+C DCH KL S +Y EI+VRD
Sbjct: 566 EEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRD 625
Query: 588 RKRFHRFKDGTCSCRDYW 605
R RFH FKDG+CSCRDYW
Sbjct: 626 RNRFHSFKDGSCSCRDYW 643
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 235/594 (39%), Positives = 348/594 (58%)
Query: 32 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNP---FCASNLVATCALSHWGSMDYACSIF 88
Q ++ +TC ++ + K++HA L+ + P F ++ S + ++YA +F
Sbjct: 49 QRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVF 106
Query: 89 RQIDEPGAFDFNTLIRGFVKEVEF-EEALFLYNEMFERGVE-PDNFTFPALFKACAKLQA 146
I+ +F +NTLIR +V EEA LY +M ERG PD TFP + KACA +
Sbjct: 107 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 166
Query: 147 LKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXXX 206
EG Q+H + K GF D++V N LI++YG C ++ A +F +M ++
Sbjct: 167 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 226
Query: 207 XXXNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS-- 264
G + L+LF EM ++ + P+ + SVLSAC LG+L LG H L+R
Sbjct: 227 LVRFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 284
Query: 265 -ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFS 323
A++V+V+ SLI+MY KCG L +F+ M + +++ MI G A HG+ +EA++ F
Sbjct: 285 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 344
Query: 324 EML--REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381
M+ RE + P+ V +VG+L AC+H G VN+G FD M +Y I P ++HYGC+VDL+
Sbjct: 345 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA 404
Query: 382 RAGMLGEALELIQSMPIQQNDVVWRSLLSAS-KVHHNLEIGEIAAKNLFQINSHHPSD-- 438
RAG + EA++++ SMP++ + V+WRSLL A K ++E+ E A+N+ + S
Sbjct: 405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNG 464
Query: 439 -----YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHP 493
YVLLS +YA A RW DV +R M+ G+ + PG S +E+ ++F + D SHP
Sbjct: 465 NCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHP 524
Query: 494 AWDNIYEMIHQMEWQLKFEGYSPDISQV-LRDVDEDEKRE-RLKGHSQKLAIAFALIHLS 551
IY+ + ++ +L+ GY PD SQ L D D +E L+ HS++LAIAF LI+L
Sbjct: 525 QTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLP 584
Query: 552 QGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
+PIRI +NLR+CNDCH TKLIS ++ EIIVRDR RFH FKDG+CSC DYW
Sbjct: 585 PQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 211/529 (39%), Positives = 325/529 (61%)
Query: 79 GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALF 138
G ++ A +F +I +N +I G+ + ++EAL L+ +M + V PD T +
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 139 KACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKXXX 198
ACA+ +++ G Q+H + GF +L + N+LI++Y KC ++E A +F+++ K
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 199 XXXXXXXXXXXNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGS 258
L+ E L LF EM P + ++S+L AC HLGA+D+G+ H
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSG-ETPNDVTMLSILPACAHLGAIDIGRWIHVY 392
Query: 259 LIRNISAL-NVI-VETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGK 316
+ + + + N + TSLIDMY KCG +E +F + K +++ MI G AMHG+
Sbjct: 393 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRAD 452
Query: 317 EALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376
+ +FS M + G++PDD+ +VG+LSACSH+G+++ G F M +Y++ P ++HYGC+
Sbjct: 453 ASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512
Query: 377 VDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436
+DL+G +G+ EA E+I M ++ + V+W SLL A K+H N+E+GE A+NL +I +P
Sbjct: 513 IDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP 572
Query: 437 SDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWD 496
YVLLSN+YA A RW +VAK R + KG+ + PG S +E+ V++F+ D+ HP
Sbjct: 573 GSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 632
Query: 497 NIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPI 556
IY M+ +ME L+ G+ PD S+VL++++E+ K L+ HS+KLAIAF LI G+ +
Sbjct: 633 EIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 692
Query: 557 RIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
I +NLR+C +CH TKLIS IY+REII RDR RFH F+DG CSC DYW
Sbjct: 693 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 220/569 (38%), Positives = 334/569 (58%)
Query: 43 NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTL 102
+L + +VH H+L G +PF A+ L+ S GS+DYA +F + + + +N L
Sbjct: 92 SLSDALRVHRHILDNGSDQDPFLATKLIGM--YSDLGSVDYARKVFDKTRKRTIYVWNAL 149
Query: 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA----LKEGMQIHGHVF 158
R EE L LY +M GVE D FT+ + KAC + L +G +IH H+
Sbjct: 150 FRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLT 209
Query: 159 KVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXXXXXXNGLWSECLK 218
+ G+ +++ +L++MY + V++AS +F M + NG E L+
Sbjct: 210 RRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALR 269
Query: 219 LFGEMNNE-KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN-ISALNVIVETSLID 276
F EM E K P +VSVL AC L AL+ GK HG ++R + ++ ++ ++L+
Sbjct: 270 TFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI-SALVT 328
Query: 277 MYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336
MY +CG LE G +F M D+ ++++ +IS +HG GK+A+ IF EML G P V
Sbjct: 329 MYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVT 388
Query: 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396
+V VL ACSH GLV EG F+ M ++ I P ++HY C+VDL+GRA L EA +++Q M
Sbjct: 389 FVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDM 448
Query: 397 PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456
+ VW SLL + ++H N+E+ E A++ LF + + +YVLL+++YA AQ W +V
Sbjct: 449 RTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVK 508
Query: 457 KIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSP 516
+++ + +GL + PG +EV RK+Y FVS D +P + I+ + ++ +K +GY P
Sbjct: 509 RVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIP 568
Query: 517 DISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLIS 576
VL +++ +EK + GHS+KLA+AF LI+ S+G PIRI +NLR+C DCH +TK IS
Sbjct: 569 QTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFIS 628
Query: 577 VIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
E+EI+VRD RFHRFK+G CSC DYW
Sbjct: 629 KFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
Identities = 218/576 (37%), Positives = 339/576 (58%)
Query: 32 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHW-GSMDYACSIFRQ 90
Q + ++ C +L E ++ A+ +K F A L+ C S SM YA +F
Sbjct: 30 QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAK-LINFCTESPTESSMSYARHLFEA 88
Query: 91 IDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150
+ EP FN++ RG+ + E L+ E+ E G+ PDN+TFP+L KACA +AL+EG
Sbjct: 89 MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148
Query: 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXXXXXXN 210
Q+H K+G + +++V +LINMY +CE V+ A +F ++ +
Sbjct: 149 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 208
Query: 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIV 270
+E L LF EM K +P E L+SVLS+C LG+LDLGK H ++ V V
Sbjct: 209 NRPNEALSLFREMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKV 267
Query: 271 ETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330
T+LIDM+ KCG L+ + +F M K +S MI A HG+ ++++ +F M E +
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENV 327
Query: 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEAL 390
+PD++ ++G+L+ACSH G V EG F +M ++ IVP+++HYG +VDL+ RAG L +A
Sbjct: 328 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAY 387
Query: 391 ELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450
E I +PI ++WR LL+A H+NL++ E ++ +F+++ H DYV+LSN+YAR +
Sbjct: 388 EFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNK 447
Query: 451 RWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLK 510
+W V +R M + + PG S +EV V++F S D A ++ + +M +LK
Sbjct: 448 KWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELK 507
Query: 511 FEGYSPDISQVLR-DVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCH 569
GY PD S V+ ++++ EK L+ HS+KLAI F L++ G+ IR+ +NLR+C DCH
Sbjct: 508 LSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCH 567
Query: 570 TYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
KLIS+I+ R++++RD +RFH F+DG CSC D+W
Sbjct: 568 NAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 233/589 (39%), Positives = 344/589 (58%)
Query: 36 TILKTCKNLEEF---KKVHAHVLKWGFF-WNPFCASNLV---ATCALSHWGSMDYACSIF 88
++L C +LE K++HA+ LK G N F S LV C G +
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFD 366
Query: 89 RQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFER-GVEPDNFTFPALFKACAKLQAL 147
R+I G + N +I G+ + +EAL L+ M E G+ ++ T + AC + A
Sbjct: 367 RKI---GLW--NAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421
Query: 148 KEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXXXX 207
IHG V K G + D FVQN+L++MY + K++ A IF +M+ +
Sbjct: 422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481
Query: 208 XXNGLWSECLKLFGEMNN-EK---------CWRPEESILVSVLSACTHLGALDLGKCTHG 257
+ + L L +M N E+ +P L+++L +C L AL GK H
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541
Query: 258 SLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKE 317
I+N A +V V ++L+DMY KCGCL+ +F + K +T++V+I MHG G+E
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQE 601
Query: 318 ALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377
A+ + M+ +G++P++V ++ V +ACSH+G+V+EGL F MK +Y + P+ HY CVV
Sbjct: 602 AIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVV 661
Query: 378 DLMGRAGMLGEALELIQSMPIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436
DL+GRAG + EA +L+ MP N W SLL AS++H+NLEIGEIAA+NL Q+ +
Sbjct: 662 DLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA 721
Query: 437 SDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWD 496
S YVLL+N+Y+ A W ++R M +G+ + PG S +E +V+KFV+ D SHP +
Sbjct: 722 SHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSE 781
Query: 497 NIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPI 556
+ + + +++ EGY PD S VL +V+EDEK L GHS+KLAIAF +++ S G+ I
Sbjct: 782 KLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTII 841
Query: 557 RIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
R+A+NLR+CNDCH TK IS I +REII+RD +RFHRFK+GTCSC DYW
Sbjct: 842 RVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 202/530 (38%), Positives = 320/530 (60%)
Query: 76 SHWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFP 135
S G +D A ++FR++ + + ++I G+ +E EA+ L+ EM E G+ PD +T
Sbjct: 342 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401
Query: 136 ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK 195
A+ CA+ + L EG ++H + + D+FV N+L++MY KC ++ A +F +M K
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 461
Query: 196 XXXXXXXXXXXXXXNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCT 255
N +E L LF + EK + P+E + VL AC L A D G+
Sbjct: 462 DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Query: 256 HGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQG 315
HG ++RN + V SL+DMY KCG L LF +A K ++++VMI+G MHG G
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGC 375
KEA+++F++M + G+E D++ +V +L ACSH+GLV+EG F+ M+ E +I PTV+HY C
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641
Query: 376 VVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435
+VD++ R G L +A I++MPI + +W +LL ++HH++++ E A+ +F++ +
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 701
Query: 436 PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAW 495
YVL++N+YA A++W V ++R + +GL ++PG S +E+ +V FV+ D S+P
Sbjct: 702 TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPET 761
Query: 496 DNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSP 555
+NI + ++ ++ EGYSP L D +E EK E L GHS+KLA+A +I G
Sbjct: 762 ENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKI 821
Query: 556 IRIARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
IR+ +NLR+C DCH K +S + REI++RD RFH+FKDG CSCR +W
Sbjct: 822 IRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
Identities = 183/444 (41%), Positives = 263/444 (59%)
Query: 165 DLFVQN--SLINMYGKCEKVEFASAIFKQMDQKXXXXXXXXXXXXXXNGLWSECLKLFGE 222
DL ++ +L++ Y K + A IF + + +G + E + LF
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403
Query: 223 MNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282
M RP L ++LS + L +L GK HGS +++ +V V +LI MY K G
Sbjct: 404 MVGGG-QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462
Query: 283 CLEKGLCLFRMM-ADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL 341
+ F ++ ++ ++++ MI LA HG +EAL +F ML EGL PD + YVGV
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522
Query: 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQN 401
SAC+HAGLVN+G FD MK +I+PT+ HY C+VDL GRAG+L EA E I+ MPI+ +
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582
Query: 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTE 461
V W SLLSA +VH N+++G++AA+ L + + Y L+N+Y+ +W + AKIR
Sbjct: 583 VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKS 642
Query: 462 MASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQV 521
M + + GFS +EV KV+ F +D +HP + IY + ++ ++K GY PD + V
Sbjct: 643 MKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702
Query: 522 LRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYER 581
L D++E+ K + L+ HS+KLAIAF LI + +RI +NLR+CNDCHT K IS + R
Sbjct: 703 LHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGR 762
Query: 582 EIIVRDRKRFHRFKDGTCSCRDYW 605
EIIVRD RFH FKDG CSCRDYW
Sbjct: 763 EIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C6T2 | PPR68_ARATH | No assigned EC number | 0.5937 | 0.9966 | 0.9950 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-137 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-129 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-26 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 8e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 419 bits (1079), Expect = e-137
Identities = 201/557 (36%), Positives = 316/557 (56%), Gaps = 8/557 (1%)
Query: 48 KKVHAHVLKWGFFWN-PFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNTLIRGF 106
+++H +V+K GF + C S + +L WG A +F +++ A + +I G+
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE---AEKVFSRMETKDAVSWTAMISGY 364
Query: 107 VKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDL 166
K ++AL Y M + V PD T ++ ACA L L G+++H + G +
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 167 FVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNE 226
V N+LI MY KC+ ++ A +F + +K V SW++IIA N E L F +M
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
Query: 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286
+P L++ LSAC +GAL GK H ++R + + +L+D+YV+CG +
Sbjct: 485 L--KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 287 GLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH 346
F K ++++++++G HG+G A+ +F+ M+ G+ PD+V ++ +L ACS
Sbjct: 543 AWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWR 406
+G+V +GL F M+ +Y I P ++HY CVVDL+GRAG L EA I MPI + VW
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466
+LL+A ++H ++E+GE+AA+++F+++ + Y+LL N+YA A +W +VA++R M G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 467 LNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVD 526
L PG S VEV KV+ F++ D SHP I ++ ++K G + S + +
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-I 780
Query: 527 EDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYEREIIVR 586
E K + GHS++LAIAF LI+ G PI + +NL MC +CH K IS I REI VR
Sbjct: 781 EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840
Query: 587 DRKRFHRFKDGTCSCRD 603
D ++FH FKDG CSC D
Sbjct: 841 DTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 395 bits (1016), Expect = e-129
Identities = 185/527 (35%), Positives = 308/527 (58%), Gaps = 1/527 (0%)
Query: 79 GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALF 138
G + A +F ++ E + T+I G V + EA L+ EM+E G + + TF +
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 139 KACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA 198
+A A L + + G Q+H V K G D FV +LI+MY KC +E A +F M +K+
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291
Query: 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGS 258
+W++++A +A +G E L L+ EM + ++ ++ + L L+ K H
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 259 LIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEA 318
LIR L+++ T+L+D+Y K G +E +F M K ++++ +I+G HG+G +A
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410
Query: 319 LSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVD 378
+ +F M+ EG+ P+ V ++ VLSAC ++GL +G F M +RI P HY C+++
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470
Query: 379 LMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438
L+GR G+L EA +I+ P + +W +LL+A ++H NLE+G +AA+ L+ + ++
Sbjct: 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530
Query: 439 YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNI 498
YV+L N+Y + R + AK+ + KGL+ P + +EV ++ + F S DR HP I
Sbjct: 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREI 590
Query: 499 YEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRI 558
Y+ + ++ ++ GY + +++L DVDEDE++ + HS+KLAIAF LI+ S+ +P++I
Sbjct: 591 YQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQI 650
Query: 559 ARNLRMCNDCHTYTKLISVIYEREIIVRDRKRFHRFKDGTCSCRDYW 605
++ R+C DCH K I+++ +REI+VRD RFH FK G CSC DYW
Sbjct: 651 TQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 7e-51
Identities = 113/397 (28%), Positives = 208/397 (52%), Gaps = 8/397 (2%)
Query: 23 PELNLRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWG 79
EL + + E + + + C+ +EE +V + L + +++ +G
Sbjct: 78 QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM--FVRFG 135
Query: 80 SMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFK 139
+ +A +F ++ E F +N L+ G+ K F+EAL LY+ M GV PD +TFP + +
Sbjct: 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVAS 199
C + L G ++H HV + GFE D+ V N+LI MY KC V A +F +M ++ S
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255
Query: 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259
W+A+I+ + NG E L+LF M E P+ + SV+SAC LG LG+ HG +
Sbjct: 256 WNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 260 IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEAL 319
++ A++V V SLI MY+ G + +F M K ++++ MISG +G +AL
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374
Query: 320 SIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379
++ M ++ + PD++ VLSAC+ G ++ G+ + ++ V ++++
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEM 433
Query: 380 MGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHH 416
+ + +ALE+ ++P +++ + W S+++ ++++
Sbjct: 434 YSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNN 469
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-31
Identities = 91/333 (27%), Positives = 148/333 (44%), Gaps = 42/333 (12%)
Query: 103 IRGFVKEVEFEEALFLY-----NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHV 157
I V EAL L+ F T+ AL +AC L++++ ++ HV
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIALKSIRCVKAVYWHV 149
Query: 158 FKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECL 217
GFE D ++ N ++ M+ KC + A +F +M ++++ASW II G + E
Sbjct: 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAF 209
Query: 218 KLFGEMNNEKCWR----PEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETS 273
LF EM W E V +L A LG+ G+ H +++ + V +
Sbjct: 210 ALFREM-----WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 274 LIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333
LIDMY KCG +E C+F M +K + ++ M++G A+HG +EAL ++ EM G+ D
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 334 DVVYVGVLSACS-----------HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382
+ ++ S HAGL+ G IV +VDL +
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG--------FPLDIVANT----ALVDLYSK 372
Query: 383 AGMLGEALELIQSMPIQQNDVVWRSLLSASKVH 415
G + +A + MP +N + W +L++ H
Sbjct: 373 WGRMEDARNVFDRMPR-KNLISWNALIAGYGNH 404
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 4e-26
Identities = 62/210 (29%), Positives = 110/210 (52%), Gaps = 11/210 (5%)
Query: 48 KKVHAHVLKWGFFWNPFCASNLVATCAL----SHWGSMDYACSIFRQIDEPGAFDFNTLI 103
+++H VLK G + F + CAL S G ++ A +F + E +N+++
Sbjct: 244 QQLHCCVLKTGVVGDTFVS------CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297
Query: 104 RGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFE 163
G+ EEAL LY EM + GV D FTF + + ++L L+ Q H + + GF
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 164 CDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223
D+ +L+++Y K ++E A +F +M +K++ SW+A+IA + ++G ++ +++F M
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 224 NNEKCWRPEESILVSVLSACTHLGALDLGK 253
E P ++VLSAC + G + G
Sbjct: 418 IAEGV-APNHVTFLAVLSACRYSGLSEQGW 446
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-26
Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 25/324 (7%)
Query: 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHV 157
D N+ +R + E+AL L M E V D + ALF+ C +A++EG ++
Sbjct: 53 DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112
Query: 158 FKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECL 217
+ + N++++M+ + ++ A +F +M ++ + SW+ ++ +A G + E L
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 218 KLFGEMNNEKCW---RPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274
L+ M W RP+ VL C + L G+ H ++R L+V V +L
Sbjct: 173 CLYHRM----LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228
Query: 275 IDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD 334
I MYVKCG + +F M + ++++ MISG +G+ E L +F M ++PD
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLE---YRI----VPTVQHYGCVVDLMGRAGMLG 387
+ V+SAC LL +R+ E Y + V ++ + G G
Sbjct: 289 MTITSVISAC--------ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 388 EALELIQSMPIQQNDVV-WRSLLS 410
EA ++ M + D V W +++S
Sbjct: 341 EAEKVFSRM--ETKDAVSWTAMIS 362
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 8e-18
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 471 PGFSLVEVARKVYKFVSQDRSHP--AWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDED 528
PG E K +S D SHP + + K EG P+ ++ DVD +
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSKEELFQRI--------KVEGVVPETKEIGHDVDAE 48
Query: 529 EKRER------LKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYERE 582
E R+ L H++K A+A+ L+ I RMC DCH + + I+ RE
Sbjct: 49 EFRDNGIKGKLLASHAEKQALAYGLLT-----TRIIKVLKRMCGDCHEFFRYIAKYTGRE 103
Query: 583 IIVRDRKRFHRFK 595
IIVRD RFH FK
Sbjct: 104 IIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 74/333 (22%), Positives = 136/333 (40%), Gaps = 34/333 (10%)
Query: 69 LVATCALSHWGSMDYACSIFRQID----EPGAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124
L++TCA S G +D +F ++ E F LI G + + +A Y M
Sbjct: 478 LISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 125 RGVEPDNFTFPALFKACAKLQALKEG------MQIHGHVFKVGFECDLFVQNSLINMYGK 178
+ V+PD F AL AC + A+ M+ H D +L+
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP----DHITVGALMKACAN 591
Query: 179 CEKVEFASAIFKQMDQKSV----ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES 234
+V+ A +++ + + ++ ++ + + + G W L ++ +M +K +P+E
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEV 650
Query: 235 ILVSVLSACTHLGALDLGKCTHGSLIRNISA----LNVIVETSLIDMYVKCGCLEKGLCL 290
+++ H G LD ++++ L + +SL+ +K L L
Sbjct: 651 FFSALVDVAGHAGDLDKAF----EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 291 F-RMMADKCQLTYSVM---ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH 346
+ + + K + T S M I+ L Q +AL + SEM R GL P+ + Y +L A
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379
+ GL + K + I P + C+ L
Sbjct: 767 KDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 99 FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK 143
+NTLI G+ K+ + EEAL L+NEM +RG++P+ +T+ L K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH 346
TY+ +I G G+ +EAL +F+EM + G++P+ Y ++
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 61/297 (20%), Positives = 129/297 (43%), Gaps = 49/297 (16%)
Query: 133 TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQM 192
TF L CA Q + +++ V + G + D + +LI+ K KV+ +F +M
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 193 D----QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248
+ +V ++ A+I A G ++ +G M ++ +P+ + +++SAC GA
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-KPDRVVFNALISACGQSGA 557
Query: 249 LDLGKCTHGSLIRNISALNVIVET---------------SLIDMYVKCGCLEKGLCLFRM 293
+D A +V+ E +L+ G +++ +++M
Sbjct: 558 VD-------------RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 294 MADKCQL-----TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG 348
+ + + Y++ ++ + G ALSI+ +M ++G++PD+V + ++ HAG
Sbjct: 605 I-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 349 LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGE---ALEL---IQSMPIQ 399
+++ + + + TV + LMG ALEL I+S+ ++
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSY----SSLMGACSNAKNWKKALELYEDIKSIKLR 716
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 60/300 (20%), Positives = 109/300 (36%), Gaps = 83/300 (27%)
Query: 124 ERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVE 183
E G++ D + L CA K KV+
Sbjct: 465 EAGLKADCKLYTTLISTCA-----------------------------------KSGKVD 489
Query: 184 FASAIFKQMD----QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV 239
+F +M + +V ++ A+I A G ++ +G M ++ +P+ + ++
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-KPDRVVFNAL 548
Query: 240 LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---- 295
+SAC GA+D A +V+ E M A
Sbjct: 549 ISACGQSGAVD-------------RAFDVLAE---------------------MKAETHP 574
Query: 296 -DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGL 354
D +T ++ A GQ A ++ + ++ VY +++CS G + L
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMP---IQQNDVVWRSLLSA 411
+D MK + + P + +VD+ G AG L +A E++Q I+ V + SL+ A
Sbjct: 635 SIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCAL----SHWGSMDYACSIFRQIDEPGAFDF 99
LE K+ HA +++ GF ++VA AL S WG M+ A ++F ++ +
Sbjct: 341 LEHAKQAHAGLIRTGF------PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 100 NTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153
N LI G+ +A+ ++ M GV P++ TF A+ AC ++G +I
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD 334
TY+ +I GL G+ +EAL +F EM G+EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGL 330
TY+ +ISG G+ +EAL +F EM +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMADK-CQ---LTYSVMISGLA 310
+V+ +LID Y K G +E+ L LF M + + TYS++I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 99 FNTLIRGFVKEVEFEEALFLYNEMFERGVEPD 130
+NTLI G K EEAL L+ EM ERG+EPD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 99 FNTLIRGFVKEVEFEEALFLYNEMFERGV 127
+N+LI G+ K + EEAL L+ EM E+GV
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKC 228
+++++I+ + G E L+LF EM +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332
TY+ ++ LA G AL++ EM GL+P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.68 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.95 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.84 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.82 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.64 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.58 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.57 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.3 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.26 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.1 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.06 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.96 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.71 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.67 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.64 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.27 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.19 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.16 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.15 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.15 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.07 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.0 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.95 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.78 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.66 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.65 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.64 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.62 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.62 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.61 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.08 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.03 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.96 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.92 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.87 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.7 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.76 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.52 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.34 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.72 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 93.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.47 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.96 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.59 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.23 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.98 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.76 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.55 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.97 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.76 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.39 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.2 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.2 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.71 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.06 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.59 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.47 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.26 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.77 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.1 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.97 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.6 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.38 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.6 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.15 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.11 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.45 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.14 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.08 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.53 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.05 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.54 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 80.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.44 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-119 Score=983.71 Aligned_cols=575 Identities=34% Similarity=0.621 Sum_probs=566.9
Q ss_pred cccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHH
Q 007396 27 LRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTL 102 (605)
Q Consensus 27 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~l 102 (605)
..|+..+|..++.+|.+ .+.+.++|..|.+.|+.||+.++|.|+ .+| ++|++++|.++|++|++||.++||++
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li---~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL---LMHVKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH---HHHhcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 34678899999999975 678899999999999999999999999 999 99999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.||..+||+||++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.| +.||..||++++.+|++.|+++.|.++|..|.+.
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++|+..+|++|+.+|+.+|+++.|+
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999997889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHH
Q 007396 423 IAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMI 502 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 502 (605)
.+++++.+++|++..+|+.|+++|++.|+|++|.++++.|+++|+.+.||+||+++++.+|.|++||..||+.+++++.+
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 594 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcccCCccccccCchhhhhhhccccchHHHHHHhhhcCCCCCcEEEeecccccCCcchhhHHhhhhhcee
Q 007396 503 HQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYERE 582 (605)
Q Consensus 503 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 582 (605)
+++..+|++.||.||+..+++++++++|+..+.+||||||+|||||++|||.||||+||||+|+|||+++|+||++++|+
T Consensus 595 ~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~ 674 (697)
T PLN03081 595 DELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKRE 674 (697)
T ss_pred HHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccccccCccccCCCCC
Q 007396 583 IIVRDRKRFHRFKDGTCSCRDYW 605 (605)
Q Consensus 583 i~~rd~~~~h~~~~g~csc~~~~ 605 (605)
|||||.+|||||+||+|||+|||
T Consensus 675 i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 675 IVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-114 Score=967.00 Aligned_cols=572 Identities=35% Similarity=0.647 Sum_probs=561.2
Q ss_pred cccccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHH
Q 007396 25 LNLRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFN 100 (605)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~ 100 (605)
.++.|+..+|..++.+|.. .+.++++|..+.+.|+.||..+||.|+ .+| ++|++++|.++|++|..||.++||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li---~~y~k~g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI---QMYLSLGSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH---HHHHhcCCHHHHHHHHhhCCCCCeeeHH
Confidence 3567889999999999975 688999999999999999999999999 999 999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 007396 101 TLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180 (605)
Q Consensus 101 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (605)
+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..+||+||++|+++|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 007396 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLI 260 (605)
Q Consensus 181 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 260 (605)
++++|.++|++|.++|+++||++|.+|+++|+.++|+.+|++|.. + ++||..||+++|.+|++.|+++.++++|..+.
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999985 5 89999999999999999999999999999999
Q ss_pred HhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007396 261 RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGV 340 (605)
Q Consensus 261 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (605)
+.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999978999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYE 500 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (605)
|+.+.+++.+++|+++..|+.|+++|++.|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|++
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCcccCCccccccCchhhhhhhccccchHHHHHHhhhcCCCCCcEEEeecccccCCcchhhHHhhhhhc
Q 007396 501 MIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPIRIARNLRMCNDCHTYTKLISVIYE 580 (605)
Q Consensus 501 ~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 580 (605)
.++++..+|++.||.||+..++ +.++++|+..+++||||||+|||||+||+|.||||+||||+|+|||+++|+||++++
T Consensus 756 ~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 834 (857)
T PLN03077 756 VLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVR 834 (857)
T ss_pred HHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhC
Confidence 9999999999999999999888 457889999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCccccccCccccCCC
Q 007396 581 REIIVRDRKRFHRFKDGTCSCRD 603 (605)
Q Consensus 581 ~~i~~rd~~~~h~~~~g~csc~~ 603 (605)
|+|||||.+|||||+||+|||+|
T Consensus 835 r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 835 REISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-71 Score=617.36 Aligned_cols=536 Identities=23% Similarity=0.373 Sum_probs=480.2
Q ss_pred cccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHH
Q 007396 27 LRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTL 102 (605)
Q Consensus 27 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~l 102 (605)
++|+..++..++++|.. +..+.++|..+++.|..++..++|+|+ .+| ++|+++.|.++|++|++||+++||+|
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li---~~~~~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML---SMFVRFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH---HHHHhCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 45777888999999864 688999999999999999999999999 999 99999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.++|..+++.|+.||..++|+||++|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
++|.++|++|+++|+++||+||.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|+++.|.++|..+.+.
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+|++.|++++|.++++.+. +.|+.|+..+|+.||++|++.|++++|.++|++|+ +||..+|++++.+|.++|+.++|.
T Consensus 398 a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAE-RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999 57999999999999999999999999999999996 578999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCc-----------------------------c
Q 007396 423 IAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPG-----------------------------F 473 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------------------------~ 473 (605)
.+|++|.+.-++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.. .
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 99999986555567777766666666666666655555555555543321 1
Q ss_pred ceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcccCCccccccCchhhhhhhc---cccchHHHHHHhhhcC
Q 007396 474 SLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERL---KGHSQKLAIAFALIHL 550 (605)
Q Consensus 474 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~hse~la~~~~~~~~ 550 (605)
+|. .++.|+..|++.+++.+.+ ++|.+.|+.||..++...+..+.+.+.+ ....+.+...+|+.++
T Consensus 556 s~n-------~lI~~~~~~G~~~~A~~lf----~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 556 SWN-------ILLTGYVAHGKGSMAVELF----NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hHH-------HHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 232 3456778899999998766 5688899999999988777666554443 1223334445666655
Q ss_pred CCCCcEEEeecccccCCcchhhHHhhhhhc
Q 007396 551 SQGSPIRIARNLRMCNDCHTYTKLISVIYE 580 (605)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 580 (605)
..... ++++.+..+|+..+|.++|.+|+.
T Consensus 625 ~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 625 LKHYA-CVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred hHHHH-HHHHHHHhCCCHHHHHHHHHHCCC
Confidence 54444 689999999999999999999863
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=531.94 Aligned_cols=511 Identities=15% Similarity=0.200 Sum_probs=392.5
Q ss_pred cChHHHHHHHHHHHHhCC-CCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHH
Q 007396 42 KNLEEFKKVHAHVLKWGF-FWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLY 119 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 119 (605)
++++.+.+++..|.+.|+ .++...++.++ ..| +.|.+++|.++|+.|+.||..+||.+|.+|++.|++++|.++|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li---~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFF---KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHH---HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 677888888888888885 45666777777 888 8888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CC
Q 007396 120 NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD----QK 195 (605)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~ 195 (605)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .|
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888885 47
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHh--CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNN--EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETS 273 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (605)
|.++||++|.+|++.|++++|.++|++|.. .| +.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|++
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 888888888888888888888888888875 56 788888888888888888888888888888888888888888888
Q ss_pred HHhHHHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL 349 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 349 (605)
+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 8888888888888888888886 457788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007396 350 VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQNDVVWRSLLSASKVHHNLEIGEIAAK 426 (605)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 426 (605)
+++|.++|+.|. +.|+.|+..+|+.||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|+++.|.++++
T Consensus 700 ~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 700 WKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887 4688888888888888888888888888888887 678888888888888888888888888888
Q ss_pred HHHhhCC-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHH
Q 007396 427 NLFQINS-HHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQM 505 (605)
Q Consensus 427 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 505 (605)
++.+.+. +|..+|..|+.+|. ++++++.++.+.+..-+. +.. +.......+++. +
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----g~~--------------~~~n~w~~~Al~----l 834 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----GRP--------------QIENKWTSWALM----V 834 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----ccc--------------ccccchHHHHHH----H
Confidence 8887763 35677888776643 245555444433332110 000 000112234444 5
Q ss_pred HHHHHHCCcccCCccccccCchhhhhhhccccchHHHHHHhhhcCCCCCcE--EEeecccccCCcchhhHHhhhhhceeE
Q 007396 506 EWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFALIHLSQGSPI--RIARNLRMCNDCHTYTKLISVIYEREI 583 (605)
Q Consensus 506 ~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i 583 (605)
+++|.+.|+.||..++...+....+.+. ....+.+-..+++.+.+++... .+++.+ |..-.+|..++..+..+.|
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCC
Confidence 5778899999998887665522112111 1122334444555555554332 244433 1112478888888887755
Q ss_pred E
Q 007396 584 I 584 (605)
Q Consensus 584 ~ 584 (605)
+
T Consensus 912 ~ 912 (1060)
T PLN03218 912 V 912 (1060)
T ss_pred C
Confidence 4
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=528.35 Aligned_cols=437 Identities=19% Similarity=0.268 Sum_probs=407.3
Q ss_pred cChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcC----CCCcccHH
Q 007396 29 LKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQID----EPGAFDFN 100 (605)
Q Consensus 29 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~----~~~~~~~~ 100 (605)
|+..+|..++.+|.+ .+.|.++|..|.+.|+.||..+||.|| ..| ++|++++|.++|++|. .||..+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI---~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI---STCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 677899999999864 789999999999999999999999999 999 9999999999999998 48999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHc
Q 007396 101 TLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFK--VGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 101 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~ 178 (605)
+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 6789999999999999999
Q ss_pred CCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHH
Q 007396 179 CEKVEFASAIFKQMDQ----KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKC 254 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~ 254 (605)
+|++++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.|.+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999985 567899999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999995 68999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----hcC-------------------CHH
Q 007396 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG----RAG-------------------MLG 387 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~ 387 (605)
.||..||+.++.+|++.|++++|.++|+.|. +.|+.||..+|++++.++. +++ ..+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999998 5799999999999997743 222 246
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-CCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 388 EALELIQSM---PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQI-NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 388 ~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+|..+|++| ++.||..+|+.++.++...+..+.+..+++.+... .+++..+|+.|++.+.+. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999 89999999999998888888888888888876543 355788999999988432 368999999999
Q ss_pred hCCCCCCCc
Q 007396 464 SKGLNQSPG 472 (605)
Q Consensus 464 ~~~~~~~~~ 472 (605)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999998653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=520.36 Aligned_cols=487 Identities=20% Similarity=0.288 Sum_probs=431.0
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007396 93 EPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNS 171 (605)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (605)
.++..+|+++|.++.+.|++++|+++|++|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3678899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL 251 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~ 251 (605)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 252 GKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007396 332 PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSA 411 (605)
Q Consensus 332 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a 411 (605)
||..||+.++.+|++.|++++|.+++..|. +.|+.|+..+|+.||++|+++|++++|.++|++|. +||..+|++|+.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 999999999999999999999999999999 57999999999999999999999999999999996 6899999999999
Q ss_pred HHhcCChHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCCCccceEEECCEEEEEEecC
Q 007396 412 SKVHHNLEIGEIAAKNLFQIN-SHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS-KGLNQSPGFSLVEVARKVYKFVSQD 489 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 489 (605)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+..... .++.+.
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~~l 472 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIELL 472 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHHHH
Confidence 999999999999999999877 34788999999999999999999999999986 58877543211 234556
Q ss_pred CCCcchHHHHHHHHHHHHHHHHCCcccCCccccccCchhhhhhhccccchHH-HHHHhhhcCCCCCcEEEeecccccCCc
Q 007396 490 RSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEKRERLKGHSQKL-AIAFALIHLSQGSPIRIARNLRMCNDC 568 (605)
Q Consensus 490 ~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~hse~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (605)
...+..+++++.++ +.++.||..++...+..+.+.+.+.. .++. ...+++-+...+..+.+++.+..+|+-
T Consensus 473 ~r~G~~~eA~~~~~-------~~~~~p~~~~~~~Ll~a~~~~g~~~~-a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 473 GREGLLDEAYAMIR-------RAPFKPTVNMWAALLTACRIHKNLEL-GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HhcCCHHHHHHHHH-------HCCCCCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 67888899887654 45888998776655555544333211 1111 112344443344555677888999999
Q ss_pred chhhHHhhhhhceeEEE-------ecCCccccccCcc
Q 007396 569 HTYTKLISVIYEREIIV-------RDRKRFHRFKDGT 598 (605)
Q Consensus 569 ~~~~~~~s~~~~~~i~~-------rd~~~~h~~~~g~ 598 (605)
.+|.+++..|.++.+-. --.+..|.|--|-
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 99999999999986532 2234556776553
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=214.45 Aligned_cols=106 Identities=58% Similarity=0.888 Sum_probs=95.8
Q ss_pred ccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcccCCccccccCchhhh--------hhhccccchHHHH
Q 007396 472 GFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDVDEDEK--------RERLKGHSQKLAI 543 (605)
Q Consensus 472 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~hse~la~ 543 (605)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899877 9999999999998 344566778999999999988877655 5678999999999
Q ss_pred HHhhhcCCCCCcEEEeecc-cccCCcchhhHHhhhhhceeEEEecCCcccccc
Q 007396 544 AFALIHLSQGSPIRIARNL-RMCNDCHTYTKLISVIYEREIIVRDRKRFHRFK 595 (605)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~ 595 (605)
|||++++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-25 Score=250.91 Aligned_cols=412 Identities=11% Similarity=0.030 Sum_probs=288.7
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHH
Q 007396 42 KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALF 117 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 117 (605)
++.+.+..++..+.+. .+.++.+++.+. ..| ..|++++|.+.|+++.+ .+...+..+...+...|++++|.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLG---AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHH---HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344455555544432 223444555555 566 66666666666666533 233445556666666666666666
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---
Q 007396 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--- 194 (605)
Q Consensus 118 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 194 (605)
.|+++.+.+ +.+..++..+...+.+.|+.++|...+..+.+.+. .+...+..++..|.+.|++++|..+++.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 666666543 22445566666666666777777777776666543 2455666677777777777777777776652
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
.+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++.+.|+++.|..++..+.+.. +.+...+..+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 345677777777777777777777777776643 3455566667777777777777777777777654 3356677777
Q ss_pred HhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 351 (605)
+..+.+.|++++|.++++.+.+. +...|..+...+...|++++|...|+++... .|+..++..+..++...|+.+
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 77777777777777777776532 3456777777788888888888888888774 355566777788888888888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ-QNDVVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
+|.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|+++ ... ++..++..+...+...|+ .+|+..++++.
T Consensus 754 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 88888888874 33456778888888888889999999888887 333 356688888888888888 77999999988
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888888889999999999999999999988664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=248.07 Aligned_cols=419 Identities=12% Similarity=0.006 Sum_probs=361.4
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHh
Q 007396 33 ECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVK 108 (605)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 108 (605)
.+..++...++.+.+.+.+..+++... .+...+..+. .+| ..|++++|.+.|+++.. .+..+++.+...+.+
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLA---RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 344455556778999999999887642 3344555666 888 99999999999999854 456788999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAI 188 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (605)
.|++++|...|+++.+.+ +.+...+..+...+...|++++|..+++.+.+.. +.+..+|..+...|.+.|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 3456678888999999999999999999998765 44788999999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 189 FKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 189 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
|+++.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..+++.+.+.. +
T Consensus 624 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 624 FKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 998753 356789999999999999999999999998854 5568889999999999999999999999999876 4
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
.+...+..+...|.+.|++++|.+.|+.+. .++..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 567788889999999999999999999876 3445677888999999999999999999998853 4466788888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 421 (605)
|...|+.++|..+|+++.+ ..+++...+..+...+.+.|+ .+|.+.++++ ...|+ ..++..+...+...|++++|
T Consensus 780 ~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999984 335678889999999999999 8899999987 44454 45788888899999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
...++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 857 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 857 LPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=177.76 Aligned_cols=355 Identities=14% Similarity=0.165 Sum_probs=181.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-HHHHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP-DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLF-VQNSLIN 174 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~ 174 (605)
.+|..+...+-..|++++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.|...++.. |+.. ..+.+-+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 34555555555555555555555555553 23 23345555555555555555555555555442 2222 2222333
Q ss_pred HHHcCCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChh
Q 007396 175 MYGKCEKVEFASAIFKQMDQ--KS-VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALD 250 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~ 250 (605)
..-..|++.+|...+.+..+ |. .+.|+.|...+-..|+...|+..|++... +.|+ ...|..+...+...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcch
Confidence 34445555555555544432 21 23555555555555555555555555544 2333 345555555555555555
Q ss_pred hHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 251 LGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
.|...+....... +....++..+...|-..|.++-|+..+++..+.+ ...||.|..++-..|+..+|...+.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 5555555554433 2234444455555555555555555555544222 24555555555555555555555555554
Q ss_pred cCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-
Q 007396 328 EGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV- 403 (605)
Q Consensus 328 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 403 (605)
..|+. ...+.|...+...|.+++|..+|.... .+.|. ....+-|...|-+.|++++|...+++. .++|+-.
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 23332 344455555555555555555555444 22333 234455555555555555555555554 4555433
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.++.+...|...|+...|.+.+.+++..+|.-...+..|+.+|-.+|+..+|..-++...+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 5555555555555555555555555555555555555555555555555555555555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=179.66 Aligned_cols=383 Identities=14% Similarity=0.137 Sum_probs=325.8
Q ss_pred hccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-HHH
Q 007396 65 CASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-LFK 139 (605)
Q Consensus 65 ~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~ 139 (605)
.|+.+. +.+ ..|++++|..++..+.+ ..+..|..+..++...|+.+.|...|.+.++. .|+.+...+ +..
T Consensus 118 ~ysn~a---N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 118 AYSNLA---NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHH---HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 445555 888 89999999999998875 35678999999999999999999999998874 566554333 233
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCChhHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A 216 (605)
.....|++++|...+.+.++.... -...|+.|...+-..|++..|...|++...-| ..+|-.|...|-..+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 334569999999999999887532 45778999999999999999999999987644 35888899999999999999
Q ss_pred HHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 217 LKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 217 ~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
+..|.+.... .|+ ...+..+...|-..|.+|.|...+++.++.. +--...|+.|.+++-..|++.+|.+.+++..
T Consensus 272 vs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 272 VSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999998874 554 6788888888899999999999999999876 3357789999999999999999999999876
Q ss_pred C--C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-h
Q 007396 296 D--K-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-V 370 (605)
Q Consensus 296 ~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 370 (605)
. + -..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...|++.. .+.|+ .
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHH
Confidence 3 2 356788999999999999999999999987 66765 578999999999999999999999987 67887 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..|+-+...|-..|+.+.|.+.+.+. .+.|.-. ..+.|.+.+...|++.+|+..++..+++.|+-+..|..++..+.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 78999999999999999999999887 7788654 899999999999999999999999999999999999999888877
Q ss_pred cCChhHHHHHHHHH
Q 007396 449 AQRWYDVAKIRTEM 462 (605)
Q Consensus 449 ~g~~~~a~~~~~~m 462 (605)
-.+|.+-.+.+++.
T Consensus 503 vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 503 VCDWTDYDKRMKKL 516 (966)
T ss_pred HhcccchHHHHHHH
Confidence 77777755444444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-17 Score=191.25 Aligned_cols=411 Identities=10% Similarity=0.031 Sum_probs=298.5
Q ss_pred ccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCc---ccHHHH------------
Q 007396 41 CKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGA---FDFNTL------------ 102 (605)
Q Consensus 41 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~---~~~~~l------------ 102 (605)
-++.+.|...+..+++.. +.+...+..+- ..| +.|++++|+..|++..+ |+. ..|..+
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg---~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALG---QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 345677777777776653 22445555555 677 78888888888877654 321 123222
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++++.... +...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCH
Confidence 234567788888888888887753 223445666677777778888888888888776532 4555666666664 3567
Q ss_pred HHHHHHHHhcCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChh
Q 007396 183 EFASAIFKQMDQKS------------VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALD 250 (605)
Q Consensus 183 ~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~ 250 (605)
++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 88887777665321 1234456677888999999999999998853 334566778888899999999
Q ss_pred hHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC----e---------eeHHHHHHHHHhcCCHHH
Q 007396 251 LGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC----Q---------LTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~----~---------~~~~~li~~~~~~g~~~~ 317 (605)
+|...++.+.+... .+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 99999999987653 344555556666788999999999999876431 1 012245667889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-
Q 007396 318 ALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM- 396 (605)
Q Consensus 318 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 396 (605)
|..+++. ..++...+..+...+.+.|+.++|...|+...+. -+.+...+..++..|...|++++|++.++..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2344556677888899999999999999999842 2345788899999999999999999999987
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC------chHHHHHHHHHHcCChhHHHHHHHHHHh-CCCC
Q 007396 397 PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP------SDYVLLSNMYARAQRWYDVAKIRTEMAS-KGLN 468 (605)
Q Consensus 397 ~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~ 468 (605)
...|+ ...+..+..++...|+.++|..+++++.+..|+++ ..+..++.++...|++++|.+.+++... .|+.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 44554 44677788889999999999999999998876544 3556678999999999999999998864 3443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=180.21 Aligned_cols=288 Identities=11% Similarity=0.095 Sum_probs=184.1
Q ss_pred HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHCCChh
Q 007396 142 AKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS-------VASWSAIIAAHASNGLWS 214 (605)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~ 214 (605)
...|++++|...+.++++.+. .+..++..+...|.+.|++++|..+++.+.... ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344556666666666655532 234455555555555555555555555544211 123445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 215 ECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 215 ~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
+|+.+|+++.+.. ++ +..+++.++..|.+.|++++|.+.|+.+
T Consensus 125 ~A~~~~~~~l~~~--~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 125 RAEELFLQLVDEG--DF-----------------------------------AEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHcCC--cc-----------------------------------hHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 5555555555432 22 3344445555555555555555555544
Q ss_pred CCCCe--------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 295 ADKCQ--------LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 295 ~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
.+.+. ..|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 32211 123445666677778888888888777642 123446666777778888888888888887732
Q ss_pred CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 367 VPT--VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 367 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
.|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|..+++++.+..|++. .+..++
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 233 356777888888888888888888887 4567766677888888899999999999999888888754 455555
Q ss_pred HHHHH---cCChhHHHHHHHHHHhCCCCCCCc
Q 007396 444 NMYAR---AQRWYDVAKIRTEMASKGLNQSPG 472 (605)
Q Consensus 444 ~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 472 (605)
..+.. .|+.+++..+++.|.++++.++|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55553 558999999999999988888885
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=176.84 Aligned_cols=295 Identities=13% Similarity=0.080 Sum_probs=231.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHc
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECD---LFVQNSLINMYGK 178 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~ 178 (605)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999864 23445788888999999999999999999988643322 3568889999999
Q ss_pred CCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHH
Q 007396 179 CEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCT 255 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~ 255 (605)
.|++++|.++|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ ..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVE-------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHH--------------------
Confidence 9999999999999975 467789999999999999999999999998754 2221100
Q ss_pred HHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007396 256 HGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332 (605)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (605)
....+..+...+.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|.++|+++.+.+...
T Consensus 179 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 179 -----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred -----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 1122345666677777777777777776532 34466777888889999999999999988753222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSA 411 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a 411 (605)
...++..+..+|...|++++|...++.+.. ..|+...+..++..+.+.|++++|..+++++ ...|+...++.++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 245678888899999999999999999874 2577777788999999999999999999876 667999999988887
Q ss_pred HHh---cCChHHHHHHHHHHHhhC
Q 007396 412 SKV---HHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 412 ~~~---~g~~~~a~~~~~~~~~~~ 432 (605)
+.. +|+.+++..+++++.+..
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHH
Confidence 664 568889999888888643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-17 Score=186.78 Aligned_cols=413 Identities=11% Similarity=0.043 Sum_probs=244.8
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhc-cccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCC
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCA-SNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVE 111 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 111 (605)
++..-++.+.|.+.+..+++... ++.... .... .+. ..|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~---~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAP-PELDLAVEYWR---LVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHH---HHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 45556778888888888876542 222211 1111 223 45889999999998875 3 34567788888888999
Q ss_pred chHHHHHHHHHHHCCC------------------C--------------CCcchHH---------------------HHH
Q 007396 112 FEEALFLYNEMFERGV------------------E--------------PDNFTFP---------------------ALF 138 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll 138 (605)
+++|+..|+++..... . |+...+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999988754321 0 1110000 112
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CC---hhHHHHH----------
Q 007396 139 KACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KS---VASWSAI---------- 203 (605)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~l---------- 203 (605)
.++...|++++|...++++++..+. +..++..|...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3345668899999999988887543 678888888999999999999999888753 22 1123222
Q ss_pred --HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 204 --IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 204 --i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
...+.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.++.+.+... .+...+..+...|. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-h
Confidence 345678899999999999988754 44566677788888889999999999998887653 23444444444443 2
Q ss_pred CCHHHHHHHHhccCCCC------------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 007396 282 GCLEKGLCLFRMMADKC------------QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAG 348 (605)
Q Consensus 282 g~~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 348 (605)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34444544444332110 011223333444455555555555555442 232 223334444455555
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHH--------------------------------------------HHHHHHHHhcC
Q 007396 349 LVNEGLLCFDRMKLEYRIVPTVQHY--------------------------------------------GCVVDLMGRAG 384 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~~~~~--------------------------------------------~~li~~~~~~g 384 (605)
+.++|...|+.+.+... .+...+ ..+...+...|
T Consensus 510 ~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555554442111 011111 12233344455
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 385 MLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 385 ~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.++|.++++.-| ++...+..+...+...|+.++|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 588 ~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 588 KEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555555555322 22334455555666666666666666666666666666666666666666666666666665554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-17 Score=177.18 Aligned_cols=358 Identities=12% Similarity=0.050 Sum_probs=264.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (605)
......+.+.|++++|+..|++.++ +.|+...|..+..++...|++++|...+..+++.... +...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 3445566667777777777777665 3456666666666777777777777777777666432 455666667777777
Q ss_pred CCHHHHHHHHHhcC---------------------------------CCChhHHHHHHH---------------------
Q 007396 180 EKVEFASAIFKQMD---------------------------------QKSVASWSAIIA--------------------- 205 (605)
Q Consensus 180 g~~~~A~~~~~~m~---------------------------------~~~~~~~~~li~--------------------- 205 (605)
|++++|..-|.... ..+..++..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 77777765443211 001111111100
Q ss_pred -----HH----------HHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHH
Q 007396 206 -----AH----------ASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 206 -----~~----------~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
++ ...+++++|++.|++....+...|+ ...+..+...+...|+++.|...++..++.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 1235788999999999876423443 4567777777889999999999999999875 33466
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh
Q 007396 270 VETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACS 345 (605)
Q Consensus 270 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 345 (605)
.|..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 788899999999999999999997753 35678999999999999999999999999874 454 456777888899
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-------H-HHHHHHHHHHhcC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-------V-VWRSLLSASKVHH 416 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~a~~~~g 416 (605)
+.|++++|...|+...+ ..+.+...|..+...+...|++++|.+.|++. .+.|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999884 23345788999999999999999999999986 444431 1 1222222344469
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 417 NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++++|+.+++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998889999999999999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-16 Score=172.50 Aligned_cols=350 Identities=10% Similarity=0.011 Sum_probs=276.2
Q ss_pred CCCChHHHHHHHhhcCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 77 HWGSMDYACSIFRQIDE------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
+..+++.-.-.|...++ -+....-.++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 66677776667776665 123334556778889999999999999998874333 33455555666778999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
.+.++.+++..+. +...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 9999999988644 677888899999999999999999998864 356688899999999999999999999887643
Q ss_pred CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHH
Q 007396 228 CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSV 304 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~ 304 (605)
+.+...+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|++.... +...+..
T Consensus 175 --P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 --PPRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred --CCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 223333333 3447788999999999999887754445555566778899999999999999987633 4567888
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 007396 305 MISGLAMHGQGKE----ALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVD 378 (605)
Q Consensus 305 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 378 (605)
+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++... ..| +...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 8999999999986 89999999874 455 45788888899999999999999999884 234 4566777889
Q ss_pred HHHhcCCHHHHHHHHHHC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 379 LMGRAGMLGEALELIQSM-PIQQNDVVW-RSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
.|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++.+..|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999987 456765543 3456678999999999999999999998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-16 Score=168.99 Aligned_cols=350 Identities=11% Similarity=0.012 Sum_probs=259.7
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD-NFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 149 (605)
..| +.|+++.|...|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...|..+..++...|++++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 455 77777777777777543 66666777777777777777777777777764 333 3466667777777777777
Q ss_pred HHHHHHHHHHhCC----------------------------CC-chhHHHH-----------------------------
Q 007396 150 GMQIHGHVFKVGF----------------------------EC-DLFVQNS----------------------------- 171 (605)
Q Consensus 150 a~~~~~~~~~~g~----------------------------~~-~~~~~~~----------------------------- 171 (605)
|...+..+...+. .| +...+..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 7654433322110 00 0000000
Q ss_pred -HHHHH------HcCCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHH
Q 007396 172 -LINMY------GKCEKVEFASAIFKQMDQK------SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESILV 237 (605)
Q Consensus 172 -li~~y------~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~ 237 (605)
++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+ ...|.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~ 369 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYI 369 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHH
Confidence 01111 1235788999999887632 3457888888999999999999999999874 454 56788
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCC
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQ 314 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 314 (605)
.+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|..+...+.+.|+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 88888999999999999999998875 446788999999999999999999999987643 45667788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--------HHHHHHHHHHHhcCC
Q 007396 315 GKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV--------QHYGCVVDLMGRAGM 385 (605)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~ 385 (605)
+++|+..|++..+. .|+ ...+..+...+...|++++|...|+.... +.|+. ..++.....+...|+
T Consensus 449 ~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 449 IASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999874 444 56788888999999999999999999873 22321 112222334445799
Q ss_pred HHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 386 LGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+++|.+++++. .+.|+. ..+..+...+...|++++|...++++.++.+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999999986 556654 47888999999999999999999999998765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-16 Score=171.85 Aligned_cols=188 Identities=11% Similarity=0.019 Sum_probs=115.7
Q ss_pred HhcCCHHHHHHHHhccCCCCe--ee--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQ--LT--YSVMISGLAMHGQGKEALSIFSEMLREGLEP---DDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~--~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~ 351 (605)
...|++++|++.|+.+.+.+. .. -..+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 345666666666666654321 11 1113456666677777777776665432110 1223444455566667777
Q ss_pred HHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 007396 352 EGLLCFDRMKLEYR----------IVPT---VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHH 416 (605)
Q Consensus 352 ~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 416 (605)
+|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 77777666653210 0122 123455666777777788887777776 3334 3446777777777777
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 417 NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.++|+..++++++++|+++..+..++..+.+.|+|++|.++++.+.+..
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888888888887777777777777777777788888887777776643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-16 Score=166.17 Aligned_cols=327 Identities=9% Similarity=-0.009 Sum_probs=266.2
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 207 (605)
..-...++..+.+.|+++.|..+++..+...+.+ ......++......|++++|...|+++.+ .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3345667778889999999999999999887664 44444555667789999999999999874 3566888899999
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 287 (605)
.+.|++++|+..|++..... +.+...+..+..++...|+.+.|...+..+......+.. .+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHH
Confidence 99999999999999998843 345667788889999999999999999988877644333 33333 347889999999
Q ss_pred HHHHhccCCCC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHH
Q 007396 288 LCLFRMMADKC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE----GLLCFDR 359 (605)
Q Consensus 288 ~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~ 359 (605)
...++.+.+.+ ...+..+...+...|++++|+..++++.+.. ..+...+..+...+...|+.++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 99999876442 2334455678899999999999999999753 2245677778889999999986 8999999
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 360 MKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 360 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
... ..| +...+..+...+.+.|++++|...+++. ...|+. ..+..+..++...|++++|...++++.+.+|.++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 883 334 5678899999999999999999999987 455654 4777888899999999999999999999999887
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+..++.++...|++++|.+.+++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 767777889999999999999999987754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-15 Score=165.33 Aligned_cols=396 Identities=8% Similarity=-0.022 Sum_probs=298.6
Q ss_pred hHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHH
Q 007396 32 QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFV 107 (605)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 107 (605)
..++.+..-.++.+.+.+++....... ..+...+..+. ..+ +.|++++|..+|++..+ .+...+..+...+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA---~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVA---VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567777777888899998988887633 23343456666 788 99999999999999543 34566788889999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHH
Q 007396 108 KEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASA 187 (605)
Q Consensus 108 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (605)
..|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++++..+. +...+..+...+.+.|..+.|.+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999998862 23444 777888888999999999999999998755 66666778888999999999999
Q ss_pred HHHhcCCCChh--------HHHHHHHHHH-----HCCCh---hHHHHHHHHHHhCCCCCCChh-HHH----HHHHHHhcc
Q 007396 188 IFKQMDQKSVA--------SWSAIIAAHA-----SNGLW---SECLKLFGEMNNEKCWRPEES-ILV----SVLSACTHL 246 (605)
Q Consensus 188 ~~~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~g~~~p~~~-t~~----~ll~a~~~~ 246 (605)
.++.... ++. ....++..+. ..+++ ++|++.++.+...-...|+.. .+. ..+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 9998776 211 1222222222 22234 778999999886410233321 211 113455677
Q ss_pred CChhhHHHHHHHHHHhcCC-chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe-------eeHHHHHHHHHhcCCHHHH
Q 007396 247 GALDLGKCTHGSLIRNISA-LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ-------LTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~~~li~~~~~~g~~~~A 318 (605)
|+.++|...|+.+.+.+.+ |+- ....+...|...|++++|+.+|+++.+.+. ..+..+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999987642 322 222357799999999999999998764332 2345566688999999999
Q ss_pred HHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 319 LSIFSEMLREG-----------LEPDD---VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 319 ~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
...++++.... -.|+. ..+..+...+...|+.++|.+.++++.. ..+.+...+..+...+...|
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 99999998742 12332 2345566788899999999999999984 33445788899999999999
Q ss_pred CHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 385 MLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
++++|++.+++. ...|+. ..+..+...+...|++++|+.+++++++..|+++.+
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999998 666764 466677778899999999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-15 Score=161.57 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=147.3
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC--CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD--KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLV 350 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 350 (605)
+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCH
Confidence 34444577888888888876543 233446666677788888888888888887643 433 2333334445566899
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
++|...+++.. ...|+...|..+...+.+.|+.++|.+.+++. ...|+.. .+..+..++...|+.++|+..++++
T Consensus 593 ~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998887 34577888889999999999999999999887 5667554 7777777899999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 429 FQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-14 Score=156.50 Aligned_cols=416 Identities=9% Similarity=0.010 Sum_probs=267.0
Q ss_pred cChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHH---HHHHhCCCchHHHH
Q 007396 42 KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLI---RGFVKEVEFEEALF 117 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~ 117 (605)
++...|...+.++++......+.++ .++ .++ ..|+.++|+..+++...|+...+..+. ..+...|++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll---~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWL---QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHH---HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456666666666655432222333 555 566 667777777777776665444433333 34555577777777
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C
Q 007396 118 LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--K 195 (605)
Q Consensus 118 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~ 195 (605)
+|+++.+... -|...+..++..+...++.++|++.++.+.+. .|+...+-.++..+...++..+|.+.++++.+ |
T Consensus 124 ly~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 7777766531 12344555556666667777777777666655 23344444444444445555557777766653 2
Q ss_pred -ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH------HHHHHHHh-----ccCCh---hhHHHHHHHHH
Q 007396 196 -SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESIL------VSVLSACT-----HLGAL---DLGKCTHGSLI 260 (605)
Q Consensus 196 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~------~~ll~a~~-----~~~~~---~~a~~~~~~~~ 260 (605)
+...+..+..+..+.|-...|+++..+-... +.+...-. ...+.--. ...++ +.|..-++.+.
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3445566666667777777776665543221 11111111 01110000 01112 22333333333
Q ss_pred Hh-cC-CchHHH-HhH---HHhHHHhcCCHHHHHHHHhccCCCC--ee--eHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 007396 261 RN-IS-ALNVIV-ETS---LIDMYVKCGCLEKGLCLFRMMADKC--QL--TYSVMISGLAMHGQGKEALSIFSEMLREG- 329 (605)
Q Consensus 261 ~~-~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~f~~m~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 329 (605)
.. +. ++.... ..+ .+-++.+.|++.++++.|+.+.... +. +--.+..+|...+++++|+.+|+++....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 31 11 222111 223 3446678899999999999998543 23 44567889999999999999999997643
Q ss_pred ----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHH
Q 007396 330 ----LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYR----------IVPT---VQHYGCVVDLMGRAGMLGEALEL 392 (605)
Q Consensus 330 ----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 392 (605)
..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122333457788999999999999999999985211 0132 23455677888999999999999
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 393 IQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 393 ~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++++ ...| |...+..+...+...|....|+..++.+..++|++..+...++..+.+.|+|.+|.++.+...+..
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9998 3344 666888999999999999999999999999999999999999999999999999999998887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-13 Score=126.03 Aligned_cols=292 Identities=16% Similarity=0.181 Sum_probs=212.3
Q ss_pred hhHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-C--------------------------CCChHH
Q 007396 31 EQECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-H--------------------------WGSMDY 83 (605)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~--------------------------~g~~~~ 83 (605)
+..+..++.. +.+.++--++..|...|..-++.+--.|+.+...| . .|.+
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v-- 195 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV-- 195 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH--
Confidence 3444444433 45777788899999888776665544443222333 2 2222
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007396 84 ACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFE 163 (605)
Q Consensus 84 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 163 (605)
|. ++-+...++..+|..||.|+++-...+.|.++|++-.+...+.+..+||.+|.+.+-. .++.+..+|+...+.
T Consensus 196 Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 22 2223333567889999999999999999999999999888899999999999876543 348899999999999
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHH----HHhcC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHHHhC--CC-CCC
Q 007396 164 CDLFVQNSLINMYGKCEKVEFASAI----FKQMD----QKSVASWSAIIAAHASNGLWSE-CLKLFGEMNNE--KC-WRP 231 (605)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~----~~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g~-~~p 231 (605)
||..|+|+++.+.++.|+++.|++. +.+|+ +|...+|..+|..+.+.++..+ |...+.++... |+ ++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999998877654 45554 5788899999999999888755 44445554432 10 333
Q ss_pred ----ChhHHHHHHHHHhccCChhhHHHHHHHHHHhc----CCch---HHHHhHHHhHHHhcCCHHHHHHHHhccCCC---
Q 007396 232 ----EESILVSVLSACTHLGALDLGKCTHGSLIRNI----SALN---VIVETSLIDMYVKCGCLEKGLCLFRMMADK--- 297 (605)
Q Consensus 232 ----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--- 297 (605)
|...|...++.|.+..+.+.|.+++....... +.++ .+-|..+....+.....+.-..+|+.|...
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 55678899999999999999999988776321 2222 344666777788888888888999888643
Q ss_pred -CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 298 -CQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 298 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+..+-..++.+....|+++-.-++|..|+..|-
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 444555667777778888888888888877663
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-13 Score=143.65 Aligned_cols=397 Identities=10% Similarity=-0.007 Sum_probs=291.6
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHh
Q 007396 33 ECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVK 108 (605)
Q Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 108 (605)
.+..++...+..+.|.......+ .|++..+..++..+..| ..|+++.|.++|+++.+ | |...+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 33444445566777777777665 44444444444333678 88999999999999876 3 35557778888999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAI 188 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (605)
.++.++|++.++++... .|+...+..++..+...++..+|.+.++++++..+. +...+..++....+.|-...|.++
T Consensus 149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999875 566666644444444456666699999999999643 778888899999999999999999
Q ss_pred HHhcCCC---ChhHH--HHHHHHHHH---------CCC---hhHHHHHHHHHHhCCCCCCCh-hHH----HHHHHHHhcc
Q 007396 189 FKQMDQK---SVASW--SAIIAAHAS---------NGL---WSECLKLFGEMNNEKCWRPEE-SIL----VSVLSACTHL 246 (605)
Q Consensus 189 ~~~m~~~---~~~~~--~~li~~~~~---------~g~---~~~A~~~~~~m~~~g~~~p~~-~t~----~~ll~a~~~~ 246 (605)
..+-+.- ....| ...+.-.++ ..+ .+.|+.-++.+...-.-.|.. .-| .--+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 8876521 11111 001111111 112 345666666665421012322 222 2346677889
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---------eeeHHHHHHHHHhcCCHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---------QLTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---------~~~~~~li~~~~~~g~~~~ 317 (605)
++..++...++.+...+.+....+-.++.++|...++.++|+.+|+.+...+ ......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 9999999999999998877677888999999999999999999999875322 2224678899999999999
Q ss_pred HHHHHHHHHHcCC-----------CC--CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007396 318 ALSIFSEMLREGL-----------EP--DDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA 383 (605)
Q Consensus 318 A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 383 (605)
|..+++++.+.-. .| |-. .+..+...+...|++.+|++.++.+.. .-+-|......+.+.+...
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 9999999987311 12 222 334456678889999999999999984 3345788899999999999
Q ss_pred CCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 384 GMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 384 g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
|.+.+|++.++.. ...|+.. +......+....+++++|..+.+.+.+..|+++.+
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 9999999999876 4567544 66777888889999999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-13 Score=146.61 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=282.2
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCCcccHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPGAFDFNTLIR--GFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
..+ +.++++.|.++.+. ...+. . ..+. +....+...++...++.|.+.. +-+......+--.....|+.++|
T Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a 395 (987)
T PRK09782 321 PVLLKEGQYDAAQKLLAT-LPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREA 395 (987)
T ss_pred HHHHhccHHHHHHHHhcC-CCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 777 88888888877542 22222 2 2333 2233466777777788887652 11333333333344577899999
Q ss_pred HHHHHHHHHh-C-CCCchhHHHHHHHHHHcCCC---HHHHHHH-------------------------HHhcCC---C--
Q 007396 151 MQIHGHVFKV-G-FECDLFVQNSLINMYGKCEK---VEFASAI-------------------------FKQMDQ---K-- 195 (605)
Q Consensus 151 ~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------~~~m~~---~-- 195 (605)
.+++...... + -..+....+.|+..|.+.+. ..++..+ +..... .
T Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~ 475 (987)
T PRK09782 396 ADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSY 475 (987)
T ss_pred HHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCC
Confidence 9999988763 1 12355566688888888876 3333322 111111 2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+...|..+..++.. ++.++|+..|.+... ..|+......+..++...|+++.|...++.+.... |+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHH
Confidence 55677888877776 899999998888876 45776655555666678999999999999886653 3344466778
Q ss_pred hHHHhcCCHHHHHHHHhccCCCCeeeHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMADKCQLTYSVMIS---GLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
..+.+.|+.++|.+.|+...+.++..++.... .....|++++|+..+++..+ ..|+...+..+..++.+.|+.++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887655444443333 33445999999999999987 56788889999999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 353 GLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
|...|++... ..| +...+..+...+...|++++|.+.+++. ...|+ ...+..+..++...|++++|+..+++++
T Consensus 628 A~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999983 345 5677888888999999999999999987 55664 4589999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
+++|++..+.....+...+..+++.|.+-+++....++.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999988887765554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-13 Score=125.62 Aligned_cols=419 Identities=12% Similarity=0.091 Sum_probs=272.5
Q ss_pred cccccChhHHHHHHHhccC---hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhc----CCCC-
Q 007396 25 LNLRLKEQECLTILKTCKN---LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQI----DEPG- 95 (605)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~----~~~~- 95 (605)
+++.++...+..+-+.... ..++...+.-+++....|+.-..-. .+.++| +...+..|.+.+.-. |.-+
T Consensus 195 inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm--nigni~~kkr~fskaikfyrmaldqvpsink 272 (840)
T KOG2003|consen 195 INLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM--NIGNIHFKKREFSKAIKFYRMALDQVPSINK 272 (840)
T ss_pred ccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee--eecceeeehhhHHHHHHHHHHHHhhccccch
Confidence 5555555555444444332 3556666777778777776544322 223778 999999999887543 3212
Q ss_pred ---cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--------
Q 007396 96 ---AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFEC-------- 164 (605)
Q Consensus 96 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------- 164 (605)
....|.+.-.+.+.|++++|+.-|+...+. .||-.+-..++-++...|+-++..+.|..|+.....+
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 223455556788999999999999998875 5776654334444445689999999999998754322
Q ss_pred ----chhHHHHHHH-----HHHcCCC--HHHHH----HHHHhcCCCChh---HHH------------------HHHHHHH
Q 007396 165 ----DLFVQNSLIN-----MYGKCEK--VEFAS----AIFKQMDQKSVA---SWS------------------AIIAAHA 208 (605)
Q Consensus 165 ----~~~~~~~li~-----~y~~~g~--~~~A~----~~~~~m~~~~~~---~~~------------------~li~~~~ 208 (605)
+....|..|. -.-+... .+++. ++..-...+|-. -|- .-..-|.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 2233332221 1111111 11111 111111222211 010 0123467
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHH--HHHHH----------------------------------HHhccCChhhH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESIL--VSVLS----------------------------------ACTHLGALDLG 252 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~--~~ll~----------------------------------a~~~~~~~~~a 252 (605)
++|+++.|+++++-..... -+.-...- .+++. .....|+++.|
T Consensus 431 k~~d~~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 8899999988888775543 11111100 01111 11124677777
Q ss_pred HHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007396 253 KCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG 329 (605)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (605)
.+.+.+.+...-......|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 77777777655333333333 3445667788888888886654 345555556667777788888888888766542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHH
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSL 408 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 408 (605)
++-|...+..|...|-+.|+-.+|.+++-.-- .-++.+.++...|..-|....-+++|...|++. -++|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 34455677788888999999999988765443 145567889899999999999999999999998 578999999999
Q ss_pred HHHH-HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 409 LSAS-KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 409 l~a~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
+..| ++.|++..|..+++.+.+.-|.+....-.|+.++...|..
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9876 7789999999999999999999999999999998887753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-11 Score=124.97 Aligned_cols=326 Identities=13% Similarity=0.098 Sum_probs=227.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhc---CCCChhHHHHHHHHHHHCCChhHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQM---DQKSVASWSAIIAAHASNGLWSECLKLFG 221 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (605)
|++++|..++.++++..+. ....|..|...|-..|+.+++...+--. ...|..-|-.+.....+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7777777777777777543 5666777777777777777777655433 34456677777777777777777777777
Q ss_pred HHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHH----hHHHhHHHhcCCHHHHHHHHhccCC-
Q 007396 222 EMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVE----TSLIDMYVKCGCLEKGLCLFRMMAD- 296 (605)
Q Consensus 222 ~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~~f~~m~~- 296 (605)
+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-. -..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 777754 555555555566667777777777777777766543333222 2334556666666777777776543
Q ss_pred -C---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHHHHh
Q 007396 297 -K---CQLTYSVMISGLAMHGQGKEALSIFSEMLREG---------------------------LEPDDVVYVGVLSACS 345 (605)
Q Consensus 297 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~ 345 (605)
. +...+|.++..|.....++.|......+.... +.++... ..+.-+..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2 23467778888888888888887777776521 1222222 12222344
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVP--TVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
+....+....+..-.. +..+.| +...|.-+.++|...|++.+|..+|..+ +..-+...|--+..+|...|..++
T Consensus 389 ~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 4444455444444444 345333 5678999999999999999999999998 222356799999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccce
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSL 475 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 475 (605)
|.+.+++++...|.+..+-..|...|...|+.++|.+++..+..-+-...+++.|
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999887433222244444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-11 Score=126.63 Aligned_cols=411 Identities=14% Similarity=0.147 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCC------cccHHHHHHHHHhCCCchHHHH
Q 007396 45 EEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPG------AFDFNTLIRGFVKEVEFEEALF 117 (605)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 117 (605)
..|.++........ ..||.+.|.|. +.| -.|+++.+..+...+...+ ..+|-.+.++|-..|++++|..
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LA---n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLA---NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHH---HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 33444444444332 34667777777 777 8888888888777665422 3347778888888888888888
Q ss_pred HHHHHHHCCCCCCcc--hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC----CHHHHHHHHHh
Q 007396 118 LYNEMFERGVEPDNF--TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE----KVEFASAIFKQ 191 (605)
Q Consensus 118 l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~ 191 (605)
.|.+.... .||.+ .+..+...+.+.|+++.+...|+.+.+..+ .+..+.-.|...|+..+ ..+.|..++.+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 88776654 34443 344566777888888888888888877742 25566666666676654 44555555555
Q ss_pred cCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHH----HhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh--
Q 007396 192 MDQK---SVASWSAIIAAHASNGLWSECLKLFGEM----NNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN-- 262 (605)
Q Consensus 192 m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-- 262 (605)
..++ |...|-.+...+-+..-+.. +.+|... ...+ -.+.....+.+.......|+++.|...|......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 4432 23334333333332222211 3333221 1222 2233334444444444444444444444433322
Q ss_pred -cCCchH------HHHh---------------------------HHHhHHHhc-------CCHHHHHHHHhccC---CCC
Q 007396 263 -ISALNV------IVET---------------------------SLIDMYVKC-------GCLEKGLCLFRMMA---DKC 298 (605)
Q Consensus 263 -~~~~~~------~~~~---------------------------~li~~y~~~-------g~~~~A~~~f~~m~---~~~ 298 (605)
...++. .+-- ..|++|.+. +...+|..++.... ..+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 001111 0011 122222222 34445555555443 223
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcC
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLRE-GLEPDDVVYVGVLSACSH------------AGLVNEGLLCFDRMKLEYR 365 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~ 365 (605)
+..|+.+...+.....+..|.+-|....+. ...+|..+..+|.+.|.. .+..++|.++|.+..+ .
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~ 641 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--N 641 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--c
Confidence 445555555666666666666555444332 123566666666664432 2345667777776663 2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-C-CCCchHHH
Q 007396 366 IVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN-S-HHPSDYVL 441 (605)
Q Consensus 366 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~ 441 (605)
-+.|...-+.+.-.++..|++.+|..+|.+. .......+|-.+..+|...|++..|+++|+...+.. + +++.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3345666666777777788888888888776 122234577777788888888888888888776553 2 35566677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|+.++.+.|+|.+|.+.........
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7888888888888877776666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.4e-14 Score=136.84 Aligned_cols=255 Identities=14% Similarity=0.118 Sum_probs=111.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH-HHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV-LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
...+.+.|++++|++++++..... .+|+...|-.+ ...+...++.+.|.+.++.+...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 444555666666666664432221 13443333332 23334456666666666666655432 55566667776 6788
Q ss_pred CHHHHHHHHhccC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007396 283 CLEKGLCLFRMMA--DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG-LEPDDVVYVGVLSACSHAGLVNEGLLCFDR 359 (605)
Q Consensus 283 ~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 359 (605)
++++|.+++...- .++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887664 3456677888888999999999999999987533 345666777888889999999999999999
Q ss_pred hHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 360 MKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 360 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
..+ ..| +......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++..+.+|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 984 345 4778888999999999999988888776 1234556888999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.....++.++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-11 Score=123.42 Aligned_cols=287 Identities=12% Similarity=0.026 Sum_probs=170.9
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAI 188 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (605)
.|++++|.+.+....+.+-.| ...|.....+..+.|+++.+.+.+.++.+....+.....-.....+...|+++.|.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578888887776655432111 1123333344467788888888888887653322222222335677788888888888
Q ss_pred HHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 189 FKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 189 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
++++.+ .+......+...|.+.|++++|.+++..+.+.+ ..++ ..+..+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~-~~~~~l~------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDE-EHRAMLE------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCH-HHHHHHH-------------------------
Confidence 877764 245667777788888888888888888887766 3221 1111000
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
...|..++....+..+.+...++++.++ ..++.....+..++...|+.++|.+++++..+. .||.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 0111122222222333444445555443 224455566666777777777777777776652 3343211 223
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a 421 (605)
+....++.+++.+..+...++ .+-|+..+.++...+.+.|++++|.+.|++. ...|+...+..|...+...|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333447777777777776642 2234455667777777777777777777776 5667777777777777777777777
Q ss_pred HHHHHHHHhh
Q 007396 422 EIAAKNLFQI 431 (605)
Q Consensus 422 ~~~~~~~~~~ 431 (605)
.+.+++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 7777776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-11 Score=125.04 Aligned_cols=278 Identities=12% Similarity=0.016 Sum_probs=184.9
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------Chh------HHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-------SVA------SWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+-.+.+.+.|.+...+...|++..|...|+..... |.. +--.+...+-..++.+.|.++|......
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 33345555666666666666666666666554321 110 1111233344455666666666666553
Q ss_pred CCCCChh-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC-----CCCeee
Q 007396 228 CWRPEES-ILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA-----DKCQLT 301 (605)
Q Consensus 228 ~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~~ 301 (605)
.|.-+ .|.-++......+...+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|.... .+|+.+
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 34432 23333322223455666666666666544 4466677778888999888888888666554 224444
Q ss_pred HHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 007396 302 YSVMISGLAM------------HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT 369 (605)
Q Consensus 302 ~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 369 (605)
.-+|.+.|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+. ..-.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~ 679 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDF 679 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhC
Confidence 4445554432 356789999999988743 235567777888889999999999999999853 2345
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
..+|--+...|..+|++..|.+.|+.. ..+.+..+...|..++...|.+.+|.+.+..+....|.++..-..++-.
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 567888899999999999999999875 2234677889999999999999999999999999999988755444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-10 Score=104.77 Aligned_cols=396 Identities=10% Similarity=0.062 Sum_probs=261.5
Q ss_pred hhccccccccCccCCCChHHHHHHHhhcCCCCccc----HHHHHH--HHHhCCCch-HHHHHHHHHHHCC----------
Q 007396 64 FCASNLVATCALSHWGSMDYACSIFRQIDEPGAFD----FNTLIR--GFVKEVEFE-EALFLYNEMFERG---------- 126 (605)
Q Consensus 64 ~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~~~~----~~~li~--~~~~~g~~~-~A~~l~~~m~~~g---------- 126 (605)
.+-|.|+ .+-..|.+.++.-+++.|.+.++.. --.|.. .|-.+.++- .-.+-|-.|...|
T Consensus 117 ~~E~nL~---kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLL---KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHH---HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 3456677 5557889999999999998643221 111111 111111111 1112222222211
Q ss_pred ---------CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----
Q 007396 127 ---------VEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD---- 193 (605)
Q Consensus 127 ---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---- 193 (605)
.+-...||.++|.+.++....+.|.+++++......+.+..++|.+|.+-+-.-+ .+++.+|.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 2235568999999999999999999999998888778899999999876443333 45555554
Q ss_pred CCChhHHHHHHHHHHHCCChhH----HHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh-HHHHHHHHHH----hcC
Q 007396 194 QKSVASWSAIIAAHASNGLWSE----CLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL-GKCTHGSLIR----NIS 264 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~----~~~ 264 (605)
.||..|+|+++++.++.|+++. |++++.+|++-| +.|...+|..+|.-..+.++..+ +..+...+.. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 6899999999999999997764 567888999999 99999999999998888777643 3444444432 112
Q ss_pred ----CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC-----------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007396 265 ----ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC-----------QLTYSVMISGLAMHGQGKEALSIFSEMLREG 329 (605)
Q Consensus 265 ----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 329 (605)
+.|...+..-++.+.+..+.+-|.++-.-....+ .+-|..+....++....+.-+..|+.|+-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 3355666777788888889888888876554221 1235567778888888999999999998877
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CH--------HH-----HHHHHH-
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-ML--------GE-----ALELIQ- 394 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~~- 394 (605)
.-|+..+...++.|....+.++-..+++..++ .+|-.-+...-.-+...+++.. +. .. |..+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998888888887 4664444444444444444433 11 11 111111
Q ss_pred ------HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC---CCCCc--hHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 395 ------SM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN---SHHPS--DYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 395 ------~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+| ...-.....+..+-.+.+.|..++|-+++..+.+.+ |..+. +..-|.+.-........|..+++.|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 112223345555556678889999998888886554 32222 2234555555667778888888888
Q ss_pred HhCCCC
Q 007396 463 ASKGLN 468 (605)
Q Consensus 463 ~~~~~~ 468 (605)
...+..
T Consensus 588 ~~~n~~ 593 (625)
T KOG4422|consen 588 SAFNLP 593 (625)
T ss_pred HHcCch
Confidence 766654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-09 Score=109.65 Aligned_cols=391 Identities=12% Similarity=0.075 Sum_probs=296.6
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNE----MFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
+...++.|.+++++..+ .+...|-+....=-.+|+.+....+.++ +...|+..+...|..=..+|-..|.+-.
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 55567777777776654 4566676666666667777777766654 3445777777777777778888888888
Q ss_pred HHHHHHHHHHhCCCCc--hhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 150 GMQIHGHVFKVGFECD--LFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++..
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888888887776432 35777777888888888888888877664 355677777776667788888899999888
Q ss_pred hCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC--CCCeeeH
Q 007396 225 NEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DKCQLTY 302 (605)
Q Consensus 225 ~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~ 302 (605)
.. .+-....+.....-.-..|+...|+.++..+.+.... +..+|-+-+..-+....++.|..+|.+.. .+....|
T Consensus 578 ~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~ 654 (913)
T KOG0495|consen 578 EQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW 654 (913)
T ss_pred Hh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh
Confidence 75 3445555655566667789999999999999987744 78888889999999999999999998776 4455677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
.--+...--.++.++|++++++.++ .-|+- ..|..+...+-+.++++.|...|..-.+ .++-.+..|-.|...=-
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHH
Confidence 7666666778899999999998887 45665 4677777788888999999988876552 34445678888888888
Q ss_pred hcCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-----------------------
Q 007396 382 RAGMLGEALELIQSMPI-QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP----------------------- 436 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----------------------- 436 (605)
+.|.+-.|..++++... .| +...|-..+..-.++|+.+.|..+..++++..|.+.
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 99999999999998832 34 567999999999999999999999888887666533
Q ss_pred -------chHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 437 -------SDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 437 -------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
......+.++....+++.|.+.|.+..+.+ |+-|-.|.
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 334566777888888999999998888765 44454553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=129.78 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=80.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-LFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
-..+.+.|++++|+++++.-.....+|+...|-. +...+...++.+.|.+.++.+.+.+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3444555666666666644333221233333322 223333455666666666666555433 44455555555 45666
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 182 VEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 182 ~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
+++|.++++..-+ ++...+..++..+.+.++++++.+++++.......+++...|......+.+.|+.+.|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666554422 34445555666666666666666666665543312344555555556666666666666666666
Q ss_pred HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 260 IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..+. .+.|...
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccccccc
Confidence 6654 2245566666777777777766555554433 345566777777777777777777777777663 1225556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
...+..++...|+.++|.++..+..
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6667777777777777777766554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-10 Score=116.27 Aligned_cols=290 Identities=10% Similarity=0.011 Sum_probs=145.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 108 KEVEFEEALFLYNEMFERGVEPDNFT-FPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 108 ~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 346666666666555443 233322 22233444555666666666666655432222223333455555666666666
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 007396 187 AIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNI 263 (605)
Q Consensus 187 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 263 (605)
+.++.+.+ .+...+..+...|.+.|++++|.+++..+.+.+ +. +...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~-~~~~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LF-DDEEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CC-CHHHHHHHHH----------------------
Confidence 66666543 234455556666666666666666666666554 22 2111110000
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV--Y- 337 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~- 337 (605)
..+..++..-......+...+.++..+. .++..+..+...+...|+.++|.+++++..+. .||... +
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111111122333334444432 25556666667777777777777777777663 333321 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH--C-CCCCCHHHHHHHHHHHHh
Q 007396 338 VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQS--M-PIQQNDVVWRSLLSASKV 414 (605)
Q Consensus 338 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~a~~~ 414 (605)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122334556666666666553322222213444566666666666666666662 2 445666666666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 007396 415 HHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~ 430 (605)
.|+.++|.+++++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=118.87 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=187.6
Q ss_pred CCCChHHHHHHHhhcCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHccCChHHHH
Q 007396 77 HWGSMDYACSIFRQIDE--PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF--TFPALFKACAKLQALKEGM 151 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 151 (605)
..|+++.|++.+.+..+ |+... +-.......+.|+++.|.+.|.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 68999999999988765 33222 333346677889999999999998765 35553 3333467778899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHH----HHHHHHCCChhHHHHHHHHHH
Q 007396 152 QIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---SVASWSAI----IAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~ 224 (605)
+.++.+.+..+. +..+...+...|...|++++|.+.++.+.+. +...+..+ ..+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999744 6788899999999999999999999998754 22223211 111122222222233333333
Q ss_pred hCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC--Ceee-
Q 007396 225 NEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK--CQLT- 301 (605)
Q Consensus 225 ~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~- 301 (605)
... |+ ..+.+...+..+...+...|+.++|.+++++..+. |...
T Consensus 253 ~~~---p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 253 KNQ---PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHC---CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 221 10 00124555666666666777777777776665532 2211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007396 302 --YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV---VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376 (605)
Q Consensus 302 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 376 (605)
+..........++.+.+.+.+++..+. .|+.. ...++...|.+.|++++|.++|+... .....|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHH
Confidence 122222233456777888888877763 45544 44567778888999999999998533 23557888888889
Q ss_pred HHHHHhcCCHHHHHHHHHHC
Q 007396 377 VDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m 396 (605)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999888864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-10 Score=109.73 Aligned_cols=214 Identities=13% Similarity=0.136 Sum_probs=174.4
Q ss_pred ccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHH
Q 007396 245 HLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSI 321 (605)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 321 (605)
-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++..+.|+... ..|+.+|-.-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3577888888899988877543 3337777888999999999999998776 34667888888888888999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC
Q 007396 322 FSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ 399 (605)
Q Consensus 322 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 399 (605)
|++.+. +.|+. ..|..+.-+..+.+.++++...|+..++ .++..+++|+.....+...++++.|.+.|+.. .+.
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999987 55644 5777777777789999999999999986 55666899999999999999999999999886 444
Q ss_pred CC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 400 QN---------DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 400 p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|+ ..+-.+++-.-. .+++..|+.+++++.+++|.....|..|+.+-...|+.++|.++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44 223333333323 38999999999999999999999999999999999999999999987653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-11 Score=122.14 Aligned_cols=274 Identities=12% Similarity=0.074 Sum_probs=152.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHCCChhHHHHH
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ------KSVASWSAIIAAHASNGLWSECLKL 219 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~ 219 (605)
+..+|...|..+... ..-+..+..-+..+|...+++++|+++|+.+.+ .+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777788774443 333447777788888888899999999888764 255667666543221 122333
Q ss_pred HH-HHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC
Q 007396 220 FG-EMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC 298 (605)
Q Consensus 220 ~~-~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 298 (605)
+. .+.... +-. +.+|-++.+.|+-+++.+.|++.|++..+-|
T Consensus 409 Laq~Li~~~--~~s-----------------------------------PesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 409 LAQDLIDTD--PNS-----------------------------------PESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred HHHHHHhhC--CCC-----------------------------------cHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 32 232222 222 3344444444444555555555554444322
Q ss_pred ---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHH
Q 007396 299 ---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHY 373 (605)
Q Consensus 299 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 373 (605)
..+|+.+..-+.....+|.|...|+..+. +.|.. ..|..+...|.+.+.++.|+-.|+.+. .+.|. ....
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~ 526 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVIL 526 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHH
Confidence 23444444444455555555555555442 23322 234444455556666666666665554 33342 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
.++...+-+.|+.++|++++++. -..| |+..--.....+...++.++|...++++.+.-|++...|..++.+|-+.|+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 44555556666666666666665 2222 222222233344556667777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHhCC
Q 007396 452 WYDVAKIRTEMASKG 466 (605)
Q Consensus 452 ~~~a~~~~~~m~~~~ 466 (605)
.+.|..-|.-+.+.+
T Consensus 607 ~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 607 TDLALLHFSWALDLD 621 (638)
T ss_pred chHHHHhhHHHhcCC
Confidence 777777776666544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-09 Score=103.84 Aligned_cols=408 Identities=10% Similarity=0.001 Sum_probs=313.8
Q ss_pred HHHHHHHHHhCCCCchhhccccccccCccCCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 48 KKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
+.|+...++. ++.++.+|-+.+ .....++|+.++.+..+ | +...|. +|++..-++.|..+++..++
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV------elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV------ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH------hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 344566666666 34466678888877665 3 333444 45556668889999999887
Q ss_pred CCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----C
Q 007396 125 RGVEPDNFTFPALFKACAKLQALKEGMQIHGHVF----KVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-----K 195 (605)
Q Consensus 125 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~ 195 (605)
. ++-+...|.+....=-..|+.+....+.++-+ ..|+..+..-|-.=...+-+.|..--+..+...... .
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 5 67778888777776677888888888877654 457777777777777777777887777777766542 1
Q ss_pred -ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 196 -SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 196 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
--.+|+.-...|.+.+.++-|..+|....+. ++-+...|......=-..|..+.-..+++.++..- +.....|-..
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ 590 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMY 590 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHH
Confidence 2358999999999999999999999998874 34566677777776677889999999999998765 3455667677
Q ss_pred HhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 351 (605)
..-+-..|++..|..++...-+. +...|-+-+.....+.++++|..+|.+... ..|+...|.--+..--..++++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHH
Confidence 77788899999999998877533 456788888889999999999999999886 5667776666666556679999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
+|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..- ..-|+. ..|-.|...--+.|++..|..++++..
T Consensus 669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999999998853 3333567888888999999999999988765 444654 488888888888999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
-.+|.+...|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 9999999999999999999999999999888877643 55565664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-10 Score=114.05 Aligned_cols=275 Identities=8% Similarity=0.022 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHH--HHHHHHhccCChhhHH
Q 007396 179 CEKVEFASAIFKQMDQK--SVA-SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILV--SVLSACTHLGALDLGK 253 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~--~ll~a~~~~~~~~~a~ 253 (605)
.|+++.|++.+...++. +.. .|-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68888888877766543 222 332233444778888888888888876 345554333 2345667788888888
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee-----------eHHHHHHHHHhcCCHHHHHHHH
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL-----------TYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~ 322 (605)
..++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.... .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888776 446778888888888999999999888887754322 3334444444455566667777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 323 SEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
+.+-+. .+.+......+..++...|+.++|...++...+ ..|+.... ++.+....|+.+++.+.+++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 766432 345667888899999999999999999998874 34554322 233334569999999999887 55665
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 402 DV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 402 ~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.. .+..+...|...+++++|.+.|+++.+..|+ ...|..|..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 6778888999999999999999999999997 45678999999999999999999987754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-11 Score=121.63 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=192.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcC--CchHHHHhHHHhHHHhcCCHHHHHH
Q 007396 212 LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS--ALNVIVETSLIDMYVKCGCLEKGLC 289 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~ 289 (605)
+.++|+..|...... +.-+.....-+..+|...+++++++.+|+.+.+... -.+..+|++.+--+-+.=.+.---+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 467888888884443 344456666778888888888888888888886542 2256667766654433222211111
Q ss_pred HHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 290 LFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 290 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
-+-.+....+.+|.++.++|..+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 12222344578999999999999999999999999987 667 56788888888888999999999999876 36
Q ss_pred ChHHHHHH---HHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 369 TVQHYGCV---VDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 369 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
++.+|++. .-.|.+.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|+++++++..++|.|+-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 77777764 55689999999999999998 78885 456677777889999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 007396 444 NMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
..+...+++++|.+.++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-09 Score=100.18 Aligned_cols=393 Identities=10% Similarity=0.018 Sum_probs=291.2
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (605)
..+++..|+.+|++... ++...|-.-+..=.++.....|..++++....=...|..=|. -+-.=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHH
Confidence 67788889999999765 677778888888899999999999999988753333433222 22233456999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhC-CCCC
Q 007396 154 HGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD--QKSVASWSAIIAAHASNGLWSECLKLFGEMNNE-KCWR 230 (605)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~ 230 (605)
|+.-.+. .|+...|++.|+.=.+-..++.|+.++++.. .|++.+|--...-=.++|+...|..+|....+. |.-.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9988766 7999999999999999999999999999865 689999988888888999999999999987763 1001
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-hHHHHhHHHhHHHhcCCHHHHHHHH--------hccCCCC---
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL-NVIVETSLIDMYVKCGCLEKGLCLF--------RMMADKC--- 298 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f--------~~m~~~~--- 298 (605)
-+...|++...-=.+...++.|+-++...++.-+.. ....|..+...--+.|+......+. +.+...|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 122334444333355678899999999988764322 2556666666666777766555443 2333333
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCCHHHHHHHHHHhHHhcCCCC
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-------VVYVGVLSAC---SHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++|+...+ -++-
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 456666777777789999999999999874 55532 1222221222 256889999999988873 3333
Q ss_pred ChHHHHHHHHHH----HhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 369 TVQHYGCVVDLM----GRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 369 ~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
...|+.-+=-+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|.+-.++.-.+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 455665554444 4678899999999776 77888889999999888999999999999999999999888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCCccce
Q 007396 444 NMYARAQRWYDVAKIRTEMASKGLNQSPGFSL 475 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 475 (605)
..-...|++|.|..+|+...+...--.|..-|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 88888999999999999888755433343333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-09 Score=99.07 Aligned_cols=314 Identities=11% Similarity=0.080 Sum_probs=217.6
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh-HHHHHHHHHHHCCChhHHHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA-SWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~ 218 (605)
..-..|....|...+...+.. -+..|.+-+....-.-+.+.+..+....+..+.. .=--+..+|-.....++++.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777766665533 2234444444433344555555554444432211 11123344555557777877
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcC--CchHHHHhHHHhHHHhcCCHHH-HHHHHhccC
Q 007396 219 LFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS--ALNVIVETSLIDMYVKCGCLEK-GLCLFRMMA 295 (605)
Q Consensus 219 ~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~~~f~~m~ 295 (605)
=.+.....| ++-+...-+-...+.-...++++|..+|+.+.+..+ -.|..+|+.++-.--.+.++.- |..+++ +.
T Consensus 249 k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id 326 (559)
T KOG1155|consen 249 KKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID 326 (559)
T ss_pred HHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc
Confidence 777777777 444443333333444567788999999999888742 1245666655533322222221 222222 22
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHH
Q 007396 296 DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHY 373 (605)
Q Consensus 296 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 373 (605)
+--+.|...+.+-|...++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+-++... .+.| |-..|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAW 401 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAW 401 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHH
Confidence 22345666677778888999999999999987 45554 567777778999999999999999988 3334 66788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|+..|.++...+..+...|+.|++.|.+.++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 89999999999999999999998 6677 566999999999999999999999999999988788999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 007396 452 WYDVAKIRTEMAS 464 (605)
Q Consensus 452 ~~~a~~~~~~m~~ 464 (605)
.++|.+.+++..+
T Consensus 482 ~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 482 LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-09 Score=109.44 Aligned_cols=315 Identities=13% Similarity=0.081 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (605)
..|++++|.+++.++.. ++...|.+|...|-+.|+.++++..+-..-..+ +-|...|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34666666666666544 344556666666666666666655543332221 12334555555555566666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh----h----HHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 154 HGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV----A----SWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
|.++++..+. +....-.-+.+|-+.|+...|..-|.++-+.+. . .--.++..|...++.+.|.+.++....
T Consensus 230 y~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666533 333333345566666666666665555543221 1 111223344445555555555555544
Q ss_pred CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh---------------------------cCCchHHH-HhHHHhH
Q 007396 226 EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN---------------------------ISALNVIV-ETSLIDM 277 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~li~~ 277 (605)
.+.-..+..+++.++..+.+...++.+.......... +..++..+ ...+--.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2212333344444455555555555544444333331 11112222 1111111
Q ss_pred HHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 353 (605)
..+.+...+++..|-.-. ..++..|.-+..+|.+.|++.+|+.+|..+...-.--+...|..+..+|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 122222333332221111 1122344445555555555555555555555433223334555555555555555555
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 354 LLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.+.|+.... ..| +...--.|...+-+.|+.++|.+.+..+
T Consensus 469 ~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 555555542 122 2233334444555555555555555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-09 Score=98.84 Aligned_cols=267 Identities=12% Similarity=0.078 Sum_probs=165.4
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCCCHHHH
Q 007396 109 EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECD---LFVQNSLINMYGKCEKVEFA 185 (605)
Q Consensus 109 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A 185 (605)
+.++++|+++|-+|.+.. +-...+..++.+.|.+.|..+.|..+|+.+.++.--+. ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998742 22333566778888899999999999999887632111 23445567778899999999
Q ss_pred HHHHHhcCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 186 SAIFKQMDQKS---VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 186 ~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+ -.+..+- |
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~e----I---------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVE----I---------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhH----H----------------------
Confidence 99999988643 3466778899999999999999999888765 2332211 1
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVG 339 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (605)
...|--|...+....+++.|..++.+..+.| +..=-.+...+...|+++.|.+.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1112223333333445555555555544322 22222344456667777777777777766543333345566
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQ-SMPIQQNDVVWRSLLSA 411 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~a 411 (605)
|..+|.+.|+.+++..++..+.+. .++...-..+.+......-.+.|...+. .+.-+|+...+..|+..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 667777777777777777766632 2333333444444444444455554443 33556666665555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-09 Score=98.25 Aligned_cols=293 Identities=14% Similarity=0.092 Sum_probs=198.9
Q ss_pred HHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 007396 102 LIRGFVK--EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179 (605)
Q Consensus 102 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (605)
+..++.+ .|++.+|..+..+-.+.+-.| ...|.....+.-..||.+.+-+++.++.+....++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444433 589999999998877766443 2346666677778899999999999998886677788888888888899
Q ss_pred CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 180 EKVEFASAIFKQMD---QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 180 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
|+++.|+.-++++. .++.........+|.+.|++.....++..|.+.| +--|+..- +
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~l~~~e~~-----------------~-- 226 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-LLSDEEAA-----------------R-- 226 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-CCChHHHH-----------------H--
Confidence 99999988777654 4677888889999999999999999999999888 44443210 0
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (605)
....+|+.+++=....+..+.-...+++.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|.
T Consensus 227 ---------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 227 ---------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ---------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 012233334433333333333344455544 23455555666667777788888888777777766665
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSAS 412 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~ 412 (605)
- ..+-.+.+.++.+.-.+..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+...|+-+..++
T Consensus 298 L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 298 L----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred H----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 2 222345566666666666666655444444 55666777777777777777777765 6667777777777777
Q ss_pred HhcCChHHHHHHHHHHHh
Q 007396 413 KVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~ 430 (605)
.+.|+.++|.+..++.+.
T Consensus 372 ~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 372 DQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 777777777777776653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-09 Score=100.80 Aligned_cols=386 Identities=10% Similarity=0.020 Sum_probs=249.8
Q ss_pred Ccc-CCCChHHHHHHHhhcCC----CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch----HHHHHHHHHc
Q 007396 74 ALS-HWGSMDYACSIFRQIDE----PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFT----FPALFKACAK 143 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~ 143 (605)
.-| ......+|+..++-+.+ ||.-. --.+...+.+...+.+|+..|+-.+..-...+..+ .+.+.-.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 777 77777888888876654 33222 22344567778889999999987766422222222 3333345678
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC----------------CChhHHHH-----
Q 007396 144 LQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ----------------KSVASWSA----- 202 (605)
Q Consensus 144 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~~~~~~~~----- 202 (605)
.|+++.|...|++..+. .|+..+.-.|+-++.--|+-++..+.|..|.. |+....|.
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 89999999999999877 47777766777788888999999999988752 22222222
Q ss_pred HHHHHHHCC--ChhHHHHHHHHHHhCCCCCCChhH-H------------H--------HHHHHHhccCChhhHHHHHHHH
Q 007396 203 IIAAHASNG--LWSECLKLFGEMNNEKCWRPEESI-L------------V--------SVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 203 li~~~~~~g--~~~~A~~~~~~m~~~g~~~p~~~t-~------------~--------~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
++.-+-+.. +.++++-.-.++..-- +.||-.. + . .-...+.+.|+++.|.+++...
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 222222222 1223332222222222 3333210 0 0 0112356789999999988877
Q ss_pred HHhcCCchHHHHhHHHhHH------------------------------------HhcCCHHHHHHHHhccCCCCeeeHH
Q 007396 260 IRNISALNVIVETSLIDMY------------------------------------VKCGCLEKGLCLFRMMADKCQLTYS 303 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y------------------------------------~~~g~~~~A~~~f~~m~~~~~~~~~ 303 (605)
.+..-..-....|.|--.+ ...|++++|.+.|++....|...-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 6553322222222221111 2346778888888877776654433
Q ss_pred HHH---HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 304 VMI---SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 304 ~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|.+++-+... -++.|+...+-|.++|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 332 2466778899999988877642 233555666777888888888999988877652 4455788999999999
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
-+.|+-..|.+..-.- ..-| +..+..-|..-|....-++.++..|++..-+.|+...--..+...+-+.|++..|..+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998876443 3333 4556666667778888899999999999888886443334445566788999999999
Q ss_pred HHHHHhC
Q 007396 459 RTEMASK 465 (605)
Q Consensus 459 ~~~m~~~ 465 (605)
++....+
T Consensus 683 yk~~hrk 689 (840)
T KOG2003|consen 683 YKDIHRK 689 (840)
T ss_pred HHHHHHh
Confidence 9988654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-12 Score=87.52 Aligned_cols=50 Identities=44% Similarity=0.808 Sum_probs=46.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc
Q 007396 94 PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK 143 (605)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (605)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-08 Score=95.72 Aligned_cols=416 Identities=7% Similarity=0.019 Sum_probs=304.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCc-ccHHHHHHHHHhCCCchHHHHHH
Q 007396 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGA-FDFNTLIRGFVKEVEFEEALFLY 119 (605)
Q Consensus 44 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~ 119 (605)
...|+.|+..++... ..+..+|-.-+ .+= ++..+..|+.+|++... |-+ ..|-.-+..=-..|+...|.++|
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYa---e~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYA---EFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHH---HHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467888888887765 34555565556 777 89999999999998654 332 23555555555669999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC----
Q 007396 120 NEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---- 195 (605)
Q Consensus 120 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---- 195 (605)
++-.+ ..|+...|.+.++.=.+.+.++.|..+++..+-. .|++..|-.....=.++|.+..|+.+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 98776 5899999999999999999999999999998765 488999988888888999999999999887631
Q ss_pred --ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHhccCChhhHHHH--------HHHHHHhc
Q 007396 196 --SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--ESILVSVLSACTHLGALDLGKCT--------HGSLIRNI 263 (605)
Q Consensus 196 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~~~~~~~~~a~~~--------~~~~~~~~ 263 (605)
+...+++...-=.++..++.|.-+|+-..+. ++-+ ...|.....-=-+-|+....... ++.+++.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2234444444445677888999999888774 3433 34444444433445554433322 33444433
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe-----eeHHHHHH--------HHHhcCCHHHHHHHHHHHHHcCC
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ-----LTYSVMIS--------GLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+.|-.+|--.++.-...|+.+...++|++....-+ ..|.--|- .=....+.+.+.++|+..++. +
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 44566777777888888999999999998753211 12322221 223467899999999999872 3
Q ss_pred CCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHH
Q 007396 331 EPDDVVYVGVLSACS----HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVV 404 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 404 (605)
+-...||.-+--.|+ +..++..|.+++.... |.-|...++...|..=.+.+.++....++++. ...| +..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 444567776655544 5688999999999887 88999999999999999999999999999987 6666 4569
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEE
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVE 477 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 477 (605)
|......-...|+.+.|..+|+-+.+...-+ ...+-..++.-...|.++.|..+++++.++.-.. ..||.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~---kvWis 545 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV---KVWIS 545 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc---hHHHh
Confidence 9998888899999999999999988764222 2234455555568899999999999998865322 16774
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-10 Score=104.44 Aligned_cols=198 Identities=11% Similarity=0.009 Sum_probs=162.7
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.....+..+...|.+.|++++|.+.|++..+. +...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567778889999999999999999876532 45677888889999999999999999998753 234566777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|...|+..............+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998843222234566777888899999999999999887 44444 5578888889999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888899999999999999999887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.5e-11 Score=121.10 Aligned_cols=267 Identities=12% Similarity=0.114 Sum_probs=193.1
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC
Q 007396 218 KLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297 (605)
Q Consensus 218 ~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 297 (605)
.++-.|...| +.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. ++
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 4567788889 9999999999999999999999999 9999998888899999999999999999887766 67
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
...+|..+..+|.++|+... ++..++ -...+...++..|....-..++..+.-..+.-||... .+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HH
Confidence 77899999999999999865 333333 1223445566666666666666654433345555543 55
Q ss_pred HHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHH
Q 007396 378 DLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHH-NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (605)
....-.|.++.+.+++..+|...-......++.-+.... .+++-....+...+ .| ++.+|..+...-..+|+.+.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHH
Confidence 566667888899999988864322112222344444332 33333333333333 34 6889999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcccCCccccccC
Q 007396 457 KIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSPDISQVLRDV 525 (605)
Q Consensus 457 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 525 (605)
.++..|+++|+.-.+.+-|. ++.| .+....++.+.+.|++.|+.|++.|+...+
T Consensus 225 ~ll~emke~gfpir~HyFwp--------Ll~g-------~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWP--------LLLG-------INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHHcCCCcccccchh--------hhhc-------CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999877777775 3333 222334555668899999999998875443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-08 Score=101.36 Aligned_cols=422 Identities=11% Similarity=0.008 Sum_probs=286.1
Q ss_pred ChhHHHHHHHhcc---ChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhh--cCCCCcccHHHHH
Q 007396 30 KEQECLTILKTCK---NLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQ--IDEPGAFDFNTLI 103 (605)
Q Consensus 30 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~--~~~~~~~~~~~li 103 (605)
+...+..+++-+- +...+.-+-+.+...+..|+..-| +. ++| -.|+++.|..+... +.+.|........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~a---q~l~~~~~y~ra~~lit~~~le~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LA---QVLYLGRQYERAAHLITTYKLEKRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HH---HHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3444555555332 134444455555555555544333 34 566 77788888777654 5668888888888
Q ss_pred HHHHhCCCchHHHHHHH----HHHHC-------C--CCCCcch----HHHHH-------HHHHccCChHHHHHHHHHHHH
Q 007396 104 RGFVKEVEFEEALFLYN----EMFER-------G--VEPDNFT----FPALF-------KACAKLQALKEGMQIHGHVFK 159 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~----~m~~~-------g--~~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~ 159 (605)
..+.+..++++|+.++. .+... + +.+|..- -+.-. ..+....+.++|+..+.+.+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 89999999999999988 33110 0 1122111 01111 123344567777777777665
Q ss_pred hCCCCchhHHHHHHHHHHc-----------------C-CCHHHHHHHHHhc----C----------------CCChhHHH
Q 007396 160 VGFECDLFVQNSLINMYGK-----------------C-EKVEFASAIFKQM----D----------------QKSVASWS 201 (605)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~-----------------~-g~~~~A~~~~~~m----~----------------~~~~~~~~ 201 (605)
..+. .-..+-.|+....- + .+.+.-+.+|+-. . +.|+...-
T Consensus 170 ~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 170 ADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred cchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 4322 11111112211110 0 0111122222211 0 11333344
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
.-..-+...+++.+.+++++...+.. ++....+..-|.++...|+-..-..+=..+++.- |....+|-++.--|.-.
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 44556778899999999999998864 6666666666777788888777666666777664 55788899999999999
Q ss_pred CCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 282 GCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 282 g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+- ++-..-.+.-+..-|.+.++.+.|.++|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999876544 468999999999999999999999887663 11122233334456788999999999999
Q ss_pred HhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC--CC------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 359 RMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM--PI------QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 359 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~------~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
+.. ++.| |+...+-+.-..-..+.+.+|..+|+.. ++ ++ -..+|+.|..+|++.+..++|+..+++.
T Consensus 405 ~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 887 6666 4666676666667778899999988775 11 11 2346888899999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 429 FQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999988764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-09 Score=99.19 Aligned_cols=340 Identities=13% Similarity=0.129 Sum_probs=225.7
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchH--HHHHHHHHccCChHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTF--PALFKACAKLQALKEGMQIH 154 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~ 154 (605)
+.|....|+..|-.....-+..|.+-+....-..+.+.+.. ... |...|..-+ -.+..++-...+.+++.+-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888877665555566665543332223332222 221 122222211 12345666667888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHCCChhHHHHHHHH-HHhCC
Q 007396 155 GHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK------SVASWSAIIAAHASNGLWSECLKLFGE-MNNEK 227 (605)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g 227 (605)
......|+.-+...-+-...+.-...|+|.|+.+|+++.+. |..+|..++ |+++.+..-+ .+.+ ..+-+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs--~LA~~v~~id 326 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLS--YLAQNVSNID 326 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHH--HHHHHHHHhc
Confidence 88888888777666666666667788899999999998754 445666655 3444332222 1111 11111
Q ss_pred CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHH
Q 007396 228 CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSV 304 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~ 304 (605)
+--+.|...+.+-|+-.++.+.|...|+..++.+ +....+|+.+.+-|....+...|.+-++... ..|-..|-.
T Consensus 327 --KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYG 403 (559)
T KOG1155|consen 327 --KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYG 403 (559)
T ss_pred --cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhh
Confidence 2334567777777888888888888888888877 4467788888888888888888888888665 445678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA 383 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 383 (605)
+.++|.-.+...-|+-.|++... ++| |...+.+|..+|.+.++.++|...|..... .| ..+...+..|.++|-+.
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEEL 479 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHH
Confidence 88888888888888888888877 455 456788888888888888888888888873 22 33567788888888888
Q ss_pred CCHHHHHHHHHHC-------C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 384 GMLGEALELIQSM-------P-IQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 384 g~~~~A~~~~~~m-------~-~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
++..+|...|++- + +.|... .-.-|..-+.+.+++++|..........+
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 8888888777654 2 233222 22224445567777777777666555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=94.41 Aligned_cols=300 Identities=10% Similarity=0.087 Sum_probs=198.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CChh------HHHHHHHHHHHCCChhHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-KSVA------SWSAIIAAHASNGLWSECL 217 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~~~~~~g~~~~A~ 217 (605)
++.++|...|-+|.+... .+..+.-+|.+.|-..|..|.|.++-+.+.+ ||.. +.-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 677788888888877532 2455666777888888888888888777654 3322 3344556677777777777
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC
Q 007396 218 KLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK 297 (605)
Q Consensus 218 ~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 297 (605)
++|..+.+.+ .- -......|+..|-+..++++|+++-+++.+.
T Consensus 128 ~~f~~L~de~--ef-----------------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 128 DIFNQLVDEG--EF-----------------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHHHHhcch--hh-----------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 7777776655 11 1223334556666666666666666555433
Q ss_pred Ceee--------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 298 CQLT--------YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY-VGVLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 298 ~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
+... |.-+...+....+.+.|..++.+..+. .|+.+-- ..+.......|+++.|.+.++.+.+ .+..-
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~y 247 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEY 247 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHH
Confidence 3222 334555566678899999999999875 3444322 3345678889999999999999984 34344
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
-..+...|..+|...|+.++...++.++ ...+....-..+-.--....-.+.|...+.+.++..|+ ...+..|+....
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l 326 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhh
Confidence 4678888999999999999999999887 44455554445544444445567777777777777786 344455555543
Q ss_pred ---HcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEE
Q 007396 448 ---RAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFV 486 (605)
Q Consensus 448 ---~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 486 (605)
..|++.+...+++.|....++..|.+....-+-..|.|.
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 346788889999999877777666544433333344443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=83.27 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH 245 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~ 245 (605)
||+++||++|.+|++.|++++|+++|++|.+.| ++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999 99999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-09 Score=98.29 Aligned_cols=248 Identities=12% Similarity=0.066 Sum_probs=114.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
|+|.+|.++..+-.+.+ +-....|.....+.-+.|+.+.+..+..++.+....++..++-+........|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 44455554444444433 2222333334444444455555555555544443344444444445555555555555444
Q ss_pred HhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 291 FRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-------VVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 291 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
.++.. .+++........+|.+.|++.+...++.+|.+.|.--|. .++..++.=+...+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 43322 333444455555555555555555555555555443332 24444554444444444444444444
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 361 KLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 361 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.. ...-++..-.+++.-+.++|+.++|.+++++. +-.-|.. -..+-.+.+-++.+.-++..++..+..|++|..+
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 32 22233334444555555555555555555443 1111111 1112223444455555555555555555555555
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 440 VLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..|+..|.+.+.|.+|.+.|+...+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555555554433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-09 Score=109.87 Aligned_cols=393 Identities=13% Similarity=0.039 Sum_probs=227.0
Q ss_pred HHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCC----CcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 007396 49 KVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEP----GAFDFNTLIRGFVKEVEFEEALFLYNEMF 123 (605)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 123 (605)
.++..+...|+.|+.++|..++ .-| ..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLi---arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLI---ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHH---HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 3567778889999999999999 889 999999988 88877653 3345777777777777766654
Q ss_pred HCCCCCCcchHHHHHHHHHccCChHH---HHHHHHHHH----HhCC-----------------CCchhHHHHHHHHHHcC
Q 007396 124 ERGVEPDNFTFPALFKACAKLQALKE---GMQIHGHVF----KVGF-----------------ECDLFVQNSLINMYGKC 179 (605)
Q Consensus 124 ~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~y~~~ 179 (605)
.|-..||..++.+|...||+.. .++.+..+. ..|+ -||.. .++....-.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 5667778888888877777554 222121111 1121 11111 112222223
Q ss_pred CCHHHHHHHHHhcC----------------------------------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 180 EKVEFASAIFKQMD----------------------------------QKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 180 g~~~~A~~~~~~m~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
|-++.+.+++..++ .++..++.+++..-..+|+.+.|..++.+|++
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 33444444433222 24667788888888889999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHH-----------hcc
Q 007396 226 EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLF-----------RMM 294 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f-----------~~m 294 (605)
.| ++.+.+-|-.++-+ .++...+..+...|...|+.|+..++.-.+-...+.|....+.... ..|
T Consensus 233 ~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 233 KG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred cC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 99 88888877777655 7777788888888889999998888877666665544332221111 000
Q ss_pred CCC-----------------------------CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH-HHHHHHHH
Q 007396 295 ADK-----------------------------CQLTYSVMISGLAMHGQGKEALSIFSEMLRE--GLEPDD-VVYVGVLS 342 (605)
Q Consensus 295 ~~~-----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-~t~~~ll~ 342 (605)
... ....|. ++.-...+|..++..++...|..- ...|+. ..|..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 000 001222 222233357777777777666431 122222 23444443
Q ss_pred HHhccC----------------------CHHHHHHHHHHhHHh---------------cCCCC-------ChHHHHHHHH
Q 007396 343 ACSHAG----------------------LVNEGLLCFDRMKLE---------------YRIVP-------TVQHYGCVVD 378 (605)
Q Consensus 343 a~~~~g----------------------~~~~a~~~~~~~~~~---------------~~~~p-------~~~~~~~li~ 378 (605)
-|.+.- +..+..+......+. ....| -...-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 333211 111111111110000 00000 0011223344
Q ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHcCChhHH
Q 007396 379 LMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---HPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a 455 (605)
.+.+.-+..+++..-++..-.-=...|..|+.-+..+...+.|..+.+++...+.. +...+..+.+.+.+.+...++
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 44444444444443333310001146777778788888888888887777665432 445677788888888888888
Q ss_pred HHHHHHHHh
Q 007396 456 AKIRTEMAS 464 (605)
Q Consensus 456 ~~~~~~m~~ 464 (605)
.++++++.+
T Consensus 548 ~tiL~e~ks 556 (1088)
T KOG4318|consen 548 STILYEDKS 556 (1088)
T ss_pred HHHHhhhhH
Confidence 888888876
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-09 Score=112.18 Aligned_cols=260 Identities=13% Similarity=0.011 Sum_probs=186.5
Q ss_pred ChhHHHHHHHHHHH-----CCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHh---------ccCChhhHHHHHHHHH
Q 007396 196 SVASWSAIIAAHAS-----NGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACT---------HLGALDLGKCTHGSLI 260 (605)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~---------~~~~~~~a~~~~~~~~ 260 (605)
+...|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++. ..++++.|...++.++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 45566666666322 23467999999999874 454 444544444332 2345789999999999
Q ss_pred HhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 007396 261 RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV-V 336 (605)
Q Consensus 261 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 336 (605)
+.. +.+...+..+...+...|++++|...|++..+. +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 886 446788888999999999999999999987633 3457888889999999999999999999884 55532 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASK 413 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~ 413 (605)
+..++..+...|++++|...++++... ..| ++..+..+...|...|+.++|.+.++++ +..|+.. .++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566789999999999988742 234 3555777888899999999999999987 4556544 4555555666
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..| +.+...++.+.+..-..+..+..+...|+-.|+-+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4788878777765433333333477778888888877776 7776644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-09 Score=104.98 Aligned_cols=231 Identities=15% Similarity=0.095 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHh-----c-CCchH-HHHhHHHhHHHhcCCHHHHHHHHhccCC-------C-
Q 007396 233 ESILVSVLSACTHLGALDLGKCTHGSLIRN-----I-SALNV-IVETSLIDMYVKCGCLEKGLCLFRMMAD-------K- 297 (605)
Q Consensus 233 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 297 (605)
..|+..+...|...|+++.|..++...++. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777788888888888888777654 1 12222 2234567788888888888888877641 1
Q ss_pred C---eeeHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 007396 298 C---QLTYSVMISGLAMHGQGKEALSIFSEMLR-----EGLEPD-D-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYR-- 365 (605)
Q Consensus 298 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 365 (605)
+ ..+++.|..+|...|++++|...+++..+ .|..+. . .-++.+...|...+.+++|..++....+-+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 34677788888999998888887776643 222222 2 2466677788999999999999887764333
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-------C--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 366 IVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-------P--IQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 366 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~--~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
+.++ ..+|+.|...|...|++++|++++++. . ..+. ...++.|..+|.+.++.+.|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467999999999999999999999887 1 1222 346788888999999999999999886543
Q ss_pred ----CCCC---CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 432 ----NSHH---PSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 432 ----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+|.. ..+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 3568889999999999999999998876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-08 Score=93.79 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=177.1
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 286 (605)
+.-.|+.-.|...|+...... .. +...|.-+..+|.+..+.++..+.|+...+.+ +.|+.+|..-..++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 456789999999999998865 22 23338888888999999999999999999987 4477788888889999999999
Q ss_pred HHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 007396 287 GLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLE 363 (605)
Q Consensus 287 A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 363 (605)
|..=|++...- ++..|--+-.+.-+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999988754 4556666666777888999999999999885 444456788888999999999999999998872
Q ss_pred cCCCCC---------hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 364 YRIVPT---------VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 364 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
+.|. +.+--.++..- -.+++..|.+++++. .+.|.. ..+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 22222222222 348999999999988 666654 488999999999999999999999988763
Q ss_pred CCCCchHHHHHHHH
Q 007396 433 SHHPSDYVLLSNMY 446 (605)
Q Consensus 433 ~~~~~~~~~l~~~~ 446 (605)
.+-.-++.+|
T Consensus 568 ----rt~~E~~~a~ 577 (606)
T KOG0547|consen 568 ----RTESEMVHAY 577 (606)
T ss_pred ----HhHHHHHHHH
Confidence 3333444444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-07 Score=89.24 Aligned_cols=302 Identities=10% Similarity=-0.029 Sum_probs=210.7
Q ss_pred CCcchHHHHHHHHHc--cCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHH---
Q 007396 129 PDNFTFPALFKACAK--LQALKEGMQIHGHVFKV-GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSA--- 202 (605)
Q Consensus 129 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~--- 202 (605)
|+..+...-+.+++. .++-..+.+.+-.+... -++.|+....++..+|...|+.++|...|++...-|+.+...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333444444555443 34555555555544443 356678888999999999999999999999877555443332
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
..-.+.+.|++++...+...+.... .-+...|..-+...-..++++.|..+-+..++.. +-++..+-.-...+...|
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 2334567888888888877776532 2333333333444455677788887777777665 334555555566777889
Q ss_pred CHHHHHHHHhccC--C-CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-hccCCHHHHHHHH
Q 007396 283 CLEKGLCLFRMMA--D-KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL-SAC-SHAGLVNEGLLCF 357 (605)
Q Consensus 283 ~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~-~~~g~~~~a~~~~ 357 (605)
+.++|.-.|+... . -+..+|.-++..|...|++.+|.-+-+...+. +.-+..+...+. ..| -....-++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999999998654 3 36789999999999999999998877765542 333445554442 222 2334457888888
Q ss_pred HHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 358 DRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 358 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
+... .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...+...+.+.+|...|..+++++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8765 45565 455677788888999999999999886 667899999999999999999999999999999999986
Q ss_pred Cc
Q 007396 436 PS 437 (605)
Q Consensus 436 ~~ 437 (605)
..
T Consensus 505 ~~ 506 (564)
T KOG1174|consen 505 KR 506 (564)
T ss_pred hH
Confidence 44
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-08 Score=94.49 Aligned_cols=192 Identities=13% Similarity=0.006 Sum_probs=117.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMY 176 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 176 (605)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++..++.... +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 445666677777777777777777776643 223445666666777777777777777777766533 455666667777
Q ss_pred HcCCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh
Q 007396 177 GKCEKVEFASAIFKQMDQK-----SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL 251 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~ 251 (605)
...|++++|.+.|++.... ....+..+...+...|++++|...|.+..... +.+...+..+...+...|+++.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776431 23355556666777777777777777766543 2234455555555566666666
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 252 GKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
|...++...+. .+.+...+..+...+...|+.++|..+++.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666655554 233344444455555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=94.23 Aligned_cols=230 Identities=13% Similarity=0.122 Sum_probs=178.8
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh
Q 007396 201 SAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK 280 (605)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 280 (605)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+++.|..++.+-++.- +-|+....-+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 56788899999999999999888774 4667788888889999999999998888887764 4455555666777778
Q ss_pred cCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007396 281 CGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 357 (605)
.++.++|.++++...+. ++.+..++..+|.-.++++-|+..++++.+.|+. +...|..+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888876633 4566666777788888888888888888888865 5567777777777777777777666
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.+... -.-+.++| ..+|-.|.......||+..|.+.|+-.+..++++..
T Consensus 382 ~RAls-------------------tat~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALS-------------------TATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHh-------------------hccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 65542 11112222 225666666667789999999999999999999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.++.|.-.-.+.|+.++|..+++......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-08 Score=96.01 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=147.6
Q ss_pred ChhhHHHHHHHHHHhc-CC--chHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNI-SA--LNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSI 321 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~-~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 321 (605)
..+.+..-+.+++... .. .....|..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455556666666432 12 2245677888889999999999999987753 3467899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CC
Q 007396 322 FSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PI 398 (605)
Q Consensus 322 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 398 (605)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.|++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999987 4565 46777788888889999999999998874 3454332222233345677899999999664 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 399 QQNDVVWRSLLSASKVHHNLEIGEIAAKNLF-------QINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 399 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
.|+...| .......|+...+ ..++.+. ++.|..+..|..++..|.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 1222335555443 2444444 44455667899999999999999999999999987653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-07 Score=90.95 Aligned_cols=279 Identities=11% Similarity=0.006 Sum_probs=212.8
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 162 FECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
...+..+.....+-+...+++.+..++++.+-+.| ...+..-|..+...|+..+-+.+=.+|.+.- +-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 34456666667777788899999999999987654 4466677888999999998888888888863 667889999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQG 315 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 315 (605)
+.--|-..|...+|++.|....... +.-...|-.+...|+-.|..++|...+....+ ..-..+--+.--|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 9988888899999999999887665 22456788899999999999999887765431 1112222344457889999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCC----ChHHHHHHHHHHHhcCCHHHH
Q 007396 316 KEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEY-RIVP----TVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A 389 (605)
+.|.+.|.+... +-|+. ..++-+.-...+.+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998875 56654 455555555566889999999998876211 1111 234578888999999999999
Q ss_pred HHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 390 LELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 390 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
...+++. .. +.+..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|..+
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999987 33 34677888999899999999999999999999999876655555433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-07 Score=101.66 Aligned_cols=240 Identities=9% Similarity=0.009 Sum_probs=141.6
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------cCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCCh
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYG---------KCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLW 213 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 213 (605)
++++|.+.+++.++..+. +...|..+..+|. ..+++++|...+++..+ .+..+|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 456677777777666432 3444554444433 22346777777776653 2455666777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
++|...|++..+.+ +.+...+..+..++...|++++|...++.+.+.... +...+..+...+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777777643 334555666666777777777777777777776533 222233344445567778888877776
Q ss_pred cCC---C-CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 007396 294 MAD---K-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVG-VLSACSHAGLVNEGLLCFDRMKLEYRIVP 368 (605)
Q Consensus 294 m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 368 (605)
... + +...+..+...|...|+.++|...+.++... .|+..+... +...+...| +++...++.+.+...-.|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 542 2 2344666667777788888888888776542 444443333 333445555 466666666654333334
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
....+.. ..|.-.|+-+.+..+ +++
T Consensus 508 ~~~~~~~--~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 508 NNPGLLP--LVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred cCchHHH--HHHHHHhhhHHHHHH-HHh
Confidence 3333323 334445555555555 555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-07 Score=91.75 Aligned_cols=399 Identities=13% Similarity=0.048 Sum_probs=244.4
Q ss_pred CCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-
Q 007396 58 GFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF- 132 (605)
Q Consensus 58 g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~- 132 (605)
.+..|+.+|..|. -.. .+|+++.+-+.|++... .....|+.+-..|+-.|.-..|+.+++.-......|+..
T Consensus 318 ~~qnd~ai~d~Lt---~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLT---FALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3456777777776 555 89999999999988654 345569999889999999899999988876554335443
Q ss_pred hHHHHHHHHHc-cCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHcC-----------CCHHHHHHHHHhcCCC-
Q 007396 133 TFPALFKACAK-LQALKEGMQIHGHVFKV--GF--ECDLFVQNSLINMYGKC-----------EKVEFASAIFKQMDQK- 195 (605)
Q Consensus 133 t~~~ll~~~~~-~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~~~- 195 (605)
.+...-+.|.+ .+..+++..+-.+++.. |. ......|-.+.-+|... ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445543 47777777777777662 11 11234444444444422 1234455556655322
Q ss_pred --ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhH
Q 007396 196 --SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETS 273 (605)
Q Consensus 196 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (605)
|..+---+.--|+-.++.+.|++..++..+-+ -.-+...+..+.-.++..+++..|..+.+.....- +.|-...-.
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 22222222333566677888888888877764 35566666666666677777777877776665321 011111111
Q ss_pred HHhHHHhcCCHHHHHHHHh--------------------------ccC-----CCCee-eHHHHHHHHHhcCCHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFR--------------------------MMA-----DKCQL-TYSVMISGLAMHGQGKEALSI 321 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~--------------------------~m~-----~~~~~-~~~~li~~~~~~g~~~~A~~~ 321 (605)
-+..-...++.++|..... .+. ..+.. ++..+. +.+. -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccc
Confidence 1111222333333332221 111 00111 111111 1111 000000000
Q ss_pred HHHHHHcCCC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 007396 322 FSEMLREGLE--PDD------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELI 393 (605)
Q Consensus 322 ~~~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 393 (605)
.. |...-+. |+. ..+......+...+..++|...+.+..+ -..-....|......+...|.+++|.+.|
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00 1111122 221 2344455567788888899888777762 22334566777777888899999999988
Q ss_pred HHC-CCCCCHH-HHHHHHHHHHhcCChHHHHH--HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 394 QSM-PIQQNDV-VWRSLLSASKVHHNLEIGEI--AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 394 ~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
... .+.|+.+ +..++...+...|+...|.. ++..+.+.+|.++..|..|+.++-+.|+.++|.+.|....+..
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 876 6778765 88899999999999888888 9999999999999999999999999999999999999887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-07 Score=96.48 Aligned_cols=231 Identities=12% Similarity=0.046 Sum_probs=160.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhC-----CCCCCChhHHH-HHHHHHhccCChhhHHHHHHHHHHh-----c--CCc
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNE-----KCWRPEESILV-SVLSACTHLGALDLGKCTHGSLIRN-----I--SAL 266 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~-----~--~~~ 266 (605)
...+...|...|++++|+.+++...+. |...|...+.. .+...+...+.+++|..+|+.+... | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333666677777777777777665542 11134433332 3555666777777777777776642 1 112
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCC-------C---Ce-eeHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMAD-------K---CQ-LTYSVMISGLAMHGQGKEALSIFSEMLRE---GLEP 332 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 332 (605)
-..+++.|..+|.+.|++++|...+++..+ . .+ ..++.++..+...+++++|..++++..+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 234566677788888888888777765431 1 11 24666777888999999999999876542 2333
Q ss_pred CH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC------
Q 007396 333 DD----VVYVGVLSACSHAGLVNEGLLCFDRMKLEY----R-IVPT-VQHYGCVVDLMGRAGMLGEALELIQSM------ 396 (605)
Q Consensus 333 ~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m------ 396 (605)
+. .+++.|...|.+.|++++|..+|+++.... + ..+. ...++-|...|.+.++..+|.++|.+.
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33 478999999999999999999999887532 1 1222 456788888999999999998888765
Q ss_pred --CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 397 --PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 397 --~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
+-.|+.. +|..|...|...|+++.|+++.+.+..
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3456654 899999999999999999999998874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-05 Score=79.67 Aligned_cols=393 Identities=13% Similarity=0.102 Sum_probs=217.2
Q ss_pred hhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC------CCCCcchHH
Q 007396 63 PFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG------VEPDNFTFP 135 (605)
Q Consensus 63 ~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~ 135 (605)
..+|...+ .+. ..|-++-+.+++++-.+-++..-+--|..++..+++++|-+.+...+... .+-+...|.
T Consensus 138 ~rIW~lyl---~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 138 DRIWDLYL---KFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred ccchHHHH---HHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 33444444 444 56666666666666555455555666666666777777666666654321 122223344
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHcCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGF--ECD--LFVQNSLINMYGKCEKVEFASAIFKQMDQK--SVASWSAIIAAHAS 209 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~ 209 (605)
-+-...++..+.-....+ +.+++.|+ -+| -..|++|.+.|.+.|.++.|..+|++..+. .+.-|+.+.+.|++
T Consensus 215 elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 333333333222211111 11222222 222 357888888888999999998888875532 22223333333332
Q ss_pred C----------------C------ChhHHHHHHHHHHhCCCC----------CCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 210 N----------------G------LWSECLKLFGEMNNEKCW----------RPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 210 ~----------------g------~~~~A~~~~~~m~~~g~~----------~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
- | +++-.+.-|+.+...+.+ +-+..++..-.. ...|+..+-...+.
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHH
Confidence 1 1 122223333333322100 111111111111 12234445555666
Q ss_pred HHHHhc-----CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee-------eHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 258 SLIRNI-----SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL-------TYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 258 ~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
++++.- +..-...|..+.+.|-..|+++.|..+|++..+-+-. +|..-...=.++.+++.|+++.++.
T Consensus 372 eAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 372 EAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 666431 1112356788899999999999999999988755432 4555555556788899999988877
Q ss_pred HHcCC----------CC-CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007396 326 LREGL----------EP-DD------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 326 ~~~g~----------~p-~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 388 (605)
....- .| .. ..|...+..--..|-++....+++.+. +..+. ++...-.....+-...-+++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii-dLria-TPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII-DLRIA-TPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhcC-CHHHHHHHHHHHHhhHHHHH
Confidence 53211 11 11 123333333344577888888888887 34432 22222222233445567899
Q ss_pred HHHHHHHC-C-C-CCCHH-HHHHHHHHHHh---cCChHHHHHHHHHHHhhCCCC-Cc-hHHHHHHHHHHcCChhHHHHHH
Q 007396 389 ALELIQSM-P-I-QQNDV-VWRSLLSASKV---HHNLEIGEIAAKNLFQINSHH-PS-DYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 389 A~~~~~~m-~-~-~p~~~-~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+.+++++- + + -|++. +|++.+.-+.+ ....+.|..+|+++++..|+. .. .|...+..-.+-|....|.+++
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999886 2 2 35655 89998886643 246899999999999987752 22 2333333334557777788877
Q ss_pred HHHH
Q 007396 460 TEMA 463 (605)
Q Consensus 460 ~~m~ 463 (605)
++..
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 7753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-05 Score=80.92 Aligned_cols=394 Identities=14% Similarity=0.124 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhhccccccccCccCCCChHHHHHHHhhcCCCCcccHHH--HHHHH--HhCCCchHHHHHH
Q 007396 44 LEEFKKVHAHVLKWGFFWNPFCASNLVATCALSHWGSMDYACSIFRQIDEPGAFDFNT--LIRGF--VKEVEFEEALFLY 119 (605)
Q Consensus 44 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g~~~~A~~l~ 119 (605)
.+.+.+.-..++..+..+....+-.++ .+-+.+.+++|+.+.+.-..- .+++. +=.+| .+.+..++|+..+
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvV---alIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVV---ALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHh---hhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 566777777777766433333444444 333777888888666554321 11222 22333 3567778888777
Q ss_pred HHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh
Q 007396 120 NEMFERGVEPDNF-TFPALFKACAKLQALKEGMQIHGHVFKVGFEC-DLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV 197 (605)
Q Consensus 120 ~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 197 (605)
+ |..++.. +...-...|-+.+++++|..+|+++.+.+.+. |...-..++..- -.-.+. +.+..+....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCc
Confidence 7 3333333 55555566777888888888888887765321 111111111110 001111 2222222111
Q ss_pred hHHHHH---HHHHHHCCChhHHHHHHHHHHhCCC--C---CCC-h------hH-HHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 198 ASWSAI---IAAHASNGLWSECLKLFGEMNNEKC--W---RPE-E------SI-LVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 198 ~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~--~---~p~-~------~t-~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
.+|..+ ...+...|++.+|+++++...+.+. + .-+ . .+ -.-+.-++-..|+-++|..++..+++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 122211 2234445555555555554411000 0 000 0 00 01112222344555555555555554
Q ss_pred hcCCch--------------------------------------------------HHHHhHHHhHHHhcCCHHHHHHHH
Q 007396 262 NISALN--------------------------------------------------VIVETSLIDMYVKCGCLEKGLCLF 291 (605)
Q Consensus 262 ~~~~~~--------------------------------------------------~~~~~~li~~y~~~g~~~~A~~~f 291 (605)
...... ...-+.++.+|. +..+.+.++-
T Consensus 253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~ 330 (652)
T KOG2376|consen 253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELS 330 (652)
T ss_pred hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHH
Confidence 432111 111122222222 2233333333
Q ss_pred hccCCCC-eeeHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------
Q 007396 292 RMMADKC-QLTYSVMISGL--AMHGQGKEALSIFSEMLREGLEPDD--VVYVGVLSACSHAGLVNEGLLCFD-------- 358 (605)
Q Consensus 292 ~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~-------- 358 (605)
...+... ...+..++... ++.....+|.+++...-+. .|+. ......+......|+++.|.+++.
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 3333222 12333333322 2223466777777766653 3443 344445556678899999999998
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--------PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
.+. +.+.. +.+...++.+|.+.++.+.|.+++.+. .-.+.. .+|.-+...-.++|+.++|..+++++.
T Consensus 409 s~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 444 23333 455667888898888877676666554 222222 244444444567899999999999999
Q ss_pred hhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 430 QINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
+.+|++..+...++.+|++. +.+.|..+-+
T Consensus 486 k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999999887 4566655443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-07 Score=88.53 Aligned_cols=218 Identities=11% Similarity=-0.006 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHH
Q 007396 212 LWSECLKLFGEMNNEKCWRPE--ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLC 289 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 289 (605)
..+.++.-+.++.......|+ ...|......+...|+.+.|...|...++.. +.+...|+.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344455555555432211222 1234444445555566666666666555554 3356677777888888888888888
Q ss_pred HHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 290 LFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 290 ~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
.|+...+. +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 88776532 3456777777888888888888888888763 45443222222233456788888888866552 22
Q ss_pred CCChHHHHHHHHHHHhcCCHHH--HHHHHHHC-CC----CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 367 VPTVQHYGCVVDLMGRAGMLGE--ALELIQSM-PI----QQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.|+...+ .++..+ .|+..+ +.+.+.+- .. .|+ ...|..+...+...|+.++|+..|+++.+.+|.+..
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3332222 233332 444433 33222221 11 122 247888889999999999999999999999975443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-05 Score=74.00 Aligned_cols=295 Identities=10% Similarity=-0.033 Sum_probs=196.7
Q ss_pred CCCchhHHHHHHHHHHcC--CCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh
Q 007396 162 FECDLFVQNSLINMYGKC--EKVEFASAIFKQMD-----QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES 234 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 234 (605)
..|........+.+|+.+ ++-..|...|-.+. ..|+.....+...+...|+.++|+..|++.+. +.|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhh
Confidence 344444444455555543 44334443332222 34677888899999999999999999998875 445443
Q ss_pred H-HHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe---eeHHHHHHHHH
Q 007396 235 I-LVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ---LTYSVMISGLA 310 (605)
Q Consensus 235 t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~ 310 (605)
+ .....-.+.+.|+++....+...+....- .....|-.-........++..|+.+-++..+-|. ..|-.-...+.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 2 11122223566777777777666654331 1122222223334445678888888877664444 34443445788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHHh-cCCHH
Q 007396 311 MHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV-DLMGR-AGMLG 387 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~ 387 (605)
+.|+.++|.-.|+..+. +.| +-..|..|+.+|...|...+|...-+...+ -+..+..+.+.+. ..+.- .-.-+
T Consensus 346 ~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred hccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHH
Confidence 88999999999998876 554 457899999999999999998887766653 3334444444331 22222 12247
Q ss_pred HHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|..++++. .++|+-. ..+.+...|...|..+.++.++++.+...|+ ....+.|++.+...+.+.+|.+.|......
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888886 7788755 6677777889999999999999999888774 678889999999999999999988777653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-07 Score=80.75 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMG 381 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 381 (605)
-+.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +..+.|-..-.+|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHH
Confidence 3455677777777777777777763 4443 467777777777888888888777776 3344 3456666667777
Q ss_pred hcCCHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 382 RAGMLGEALELIQSM---PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m---~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
..|++++|...|++. |.-|. ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888776 32232 34788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 007396 458 IRTEMASKGL 467 (605)
Q Consensus 458 ~~~~m~~~~~ 467 (605)
.++....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9988887665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.4e-05 Score=75.51 Aligned_cols=381 Identities=11% Similarity=0.055 Sum_probs=244.1
Q ss_pred cCCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHHccCChHHHH
Q 007396 76 SHWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN-FTFPALFKACAKLQALKEGM 151 (605)
Q Consensus 76 y~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 151 (605)
+..|+-++|......-.. ++.+.|..+.-.+-...++++|+..|...... .||. ..+.-+--.-++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 378899999988877665 45677998888888888999999999999875 4554 34544444456778888777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CChhHHHHH------HHHHHHCCChhHHHHHH
Q 007396 152 QIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-----KSVASWSAI------IAAHASNGLWSECLKLF 220 (605)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~ 220 (605)
..-..+.+..+. ....|..+..++.-.|+...|..+.++..+ ++...+.-. .......|..++|++.+
T Consensus 130 ~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 777776666432 556778888888888999999888877652 333333222 23456788888888877
Q ss_pred HHHHhCCCCCCChhHHH-HHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH-HHHhccCCCC
Q 007396 221 GEMNNEKCWRPEESILV-SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL-CLFRMMADKC 298 (605)
Q Consensus 221 ~~m~~~g~~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~~~ 298 (605)
..-... ..|...+. .-...+.+.+++++|..++..++... +.+...|..+..++.+-.+.-++. .+|....+.-
T Consensus 209 ~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 664432 23333332 33455678899999999999988875 334455555556665444444444 6666554221
Q ss_pred ee--eHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHhHHhcC------
Q 007396 299 QL--TYSVMISGLAM-HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN----EGLLCFDRMKLEYR------ 365 (605)
Q Consensus 299 ~~--~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~~~------ 365 (605)
.. .-.-+--.... ..-.+..-+++..+.+.|+.+- |..+.+-+-.....+ -+..+...+.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D 360 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSG-TGMFNFLD 360 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhccc-ccCCCccc
Confidence 10 00000001111 2223344556777778887643 333333332222111 12222222221 11
Q ss_pred ----CCCChH--HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 366 ----IVPTVQ--HYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 366 ----~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
-+|... ++-.++..|-+.|+++.|+..++.. +-.|+.+ .|..-...+...|+++.|...++++.+++-.|..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 134443 4556788899999999999999987 6567765 5656667788899999999999999999876554
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
.-.--+.-..++.+.++|.++.....+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 444556666788999999999988877664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-05 Score=75.75 Aligned_cols=362 Identities=10% Similarity=0.156 Sum_probs=190.0
Q ss_pred hHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH
Q 007396 81 MDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFER-GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFK 159 (605)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 159 (605)
++.+...+.+|+. .|-.-+..+..+|+.......|+..+.. -+.-....|...+......+-++.+..+++..++
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3444444444442 4555555666666666666666665543 1222233455555555555666666666666654
Q ss_pred hCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHCCChh---HHHHHHHHHHhC
Q 007396 160 VGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK----------SVASWSAIIAAHASNGLWS---ECLKLFGEMNNE 226 (605)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~ 226 (605)
.. +..-+.-|..+++.+++++|.+.+...... +-..|+.+-...+++-+.- ....+++.+..
T Consensus 167 ~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~- 241 (835)
T KOG2047|consen 167 VA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR- 241 (835)
T ss_pred cC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-
Confidence 42 223445555666666666666666555422 2234544444444332222 22223333322
Q ss_pred CCCCCCh--hHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC----------------------
Q 007396 227 KCWRPEE--SILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG---------------------- 282 (605)
Q Consensus 227 g~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---------------------- 282 (605)
.-+|. ..+.+|..-|.+.|.++.|+.++++.+..-. .+.-++.+.++|+...
T Consensus 242 --rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 242 --RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred --cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 22333 2345555566666666666666655554321 2222333333333211
Q ss_pred CHHHHHHHHhccCCC---------------CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHH
Q 007396 283 CLEKGLCLFRMMADK---------------CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD------VVYVGVL 341 (605)
Q Consensus 283 ~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll 341 (605)
+++-...-|+.+..+ ++..|..-+. ...|+..+-...|.+..+. +.|-. ..|..+.
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHH
Confidence 122222333332211 2223332222 3356677777777777764 44432 3566677
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCC---------------
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPT---VQHYGCVVDLMGRAGMLGEALELIQSM---PIQQ--------------- 400 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--------------- 400 (605)
.-|-..|+++.|..+|++..+ -..+.- ..+|..-.++=.+..+++.|++++++. |-.|
T Consensus 395 klYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 777888888888888887763 222211 345666666667777888888888776 2211
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 401 --NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 401 --~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+..+|..++..--..|-++....++++++++..-.|......+..+....-++++.+++
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12355555665566677777777888877776555544444444445555566666665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=86.41 Aligned_cols=220 Identities=8% Similarity=-0.056 Sum_probs=118.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHCCC
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--K-SVASWSAIIAAHASNGL 212 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 212 (605)
.+.++|.+.|.+.+|...++..++.. |-+.+|-.|-.+|-+..+...|+.+|.+-.+ | |+.-..-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 34445555555555555555554442 2333444455555555555555555554432 2 22222334444555555
Q ss_pred hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 213 WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 213 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
.++|+++|+...+.. +.+......+...+.-.+++|.|..++..+.+.|.. +...|+.+.-.+.-.+++|-++.-|.
T Consensus 306 ~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 566666666555543 334444445555555555666666666666666533 45555555555555666666665555
Q ss_pred ccC----CCC--eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 293 MMA----DKC--QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 293 ~m~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
+.. +++ ...|-.+.......|++.-|.+.|+-..... .-+...++.|.-.-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 432 222 2345555555566677777777776665432 1123466666666667777777777777665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-06 Score=87.74 Aligned_cols=256 Identities=10% Similarity=0.019 Sum_probs=159.7
Q ss_pred HHHHcCCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-cc---
Q 007396 174 NMYGKCEKVEFASAIFKQMDQ--KSVA-SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACT-HL--- 246 (605)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-~~--- 246 (605)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..|. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccc
Confidence 445677888888888766543 2433 34455667777788888888888887754 55555544444433 11
Q ss_pred --CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCH-HHHHHHHH
Q 007396 247 --GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQG-KEALSIFS 323 (605)
Q Consensus 247 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 323 (605)
.+.+.-.++++.+...-+..+. ...+.-.+.....+ ..+...+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~---------------------------------~~rl~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDA---------------------------------PRRLPLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccc---------------------------------hhHhhcccCCHHHHHHHHHHHHH
Confidence 1223333333333222211110 00011111111112 24455666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-------------CCCCChH--HHHHHHHHHHhcCCHHH
Q 007396 324 EMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY-------------RIVPTVQ--HYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~ 388 (605)
.+...|++ .+|+.|-..|......+-...++....... .-+|+.. ++..+...|-..|++++
T Consensus 136 ~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 67777765 355555555655555554555555443211 1123332 44566788889999999
Q ss_pred HHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 389 ALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 389 A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|++++++. ...|+.+ .|..-...+...|++++|.+.++.+.++++.|...-.-.+..+.++|+.++|.+++......+
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999976 6667754 777778889999999999999999999999888777788888899999999999999887776
Q ss_pred CC
Q 007396 467 LN 468 (605)
Q Consensus 467 ~~ 468 (605)
..
T Consensus 293 ~~ 294 (517)
T PF12569_consen 293 VD 294 (517)
T ss_pred CC
Confidence 53
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-05 Score=81.64 Aligned_cols=198 Identities=8% Similarity=-0.112 Sum_probs=108.5
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL-EPDD--VVYVGVLS 342 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~ 342 (605)
.....+...+...|++++|.+.+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3334455566667777777777766542 2344556666667777777777777776665321 1222 23445556
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCCHHHHHHH---HHHC-CCCCC---HHHHHHHHHHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHY-G--CVVDLMGRAGMLGEALEL---IQSM-PIQQN---DVVWRSLLSAS 412 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p~---~~~~~~ll~a~ 412 (605)
.+...|+.++|..+++.........+..... + .++..+...|..+.+.++ .... +..|. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 6667777777777777664211111111111 1 222223333322222222 1111 11011 12222455566
Q ss_pred HhcCChHHHHHHHHHHHhhCCC---------CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSH---------HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|+.+.|..+++.+...... ..........++...|++++|.+.+.......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788888888888887653211 23445667777889999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=85.32 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=116.2
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS- 345 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~- 345 (605)
+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHH
Confidence 3334444445667788888888888765 34455566788899999999999999999863 444 34444554443
Q ss_pred ---ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCh-H
Q 007396 346 ---HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNL-E 419 (605)
Q Consensus 346 ---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~-~ 419 (605)
..+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++++. ...|+ ..+...++.+....|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 23468999999999874 45678888999999999999999999998885 44454 44777777777777877 7
Q ss_pred HHHHHHHHHHhhCCCCC
Q 007396 420 IGEIAAKNLFQINSHHP 436 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~ 436 (605)
.+.+.+.++....|..+
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 78889999998888755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-05 Score=73.76 Aligned_cols=375 Identities=15% Similarity=0.069 Sum_probs=219.1
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~ 152 (605)
..|++++|..++..+.+ ++...|-.|.-.+.-.|.+.+|..+-... |+.. .-..++...-+.++-++-..
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHH
Confidence 78888888888776543 45555666665555567777776665443 2333 23334455556677777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHH-HHHHHCCChhHHHHHHHHHHhCCCC
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAII-AAHASNGLWSECLKLFGEMNNEKCW 229 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~ 229 (605)
+++.+-.. ..-.-+|..+.--.-.+.+|.+++.++.. |+....|.-+ -+|.+...++-+.+++.--... +
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~ 215 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--F 215 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--C
Confidence 77666432 12223344443334458899999988765 3444555443 4567777788888887776653 2
Q ss_pred CCChhHHHHHHHHHhccCChhhHHH--------------HHHHHHHhcC------C------c-----hHHHHhHHHhHH
Q 007396 230 RPEESILVSVLSACTHLGALDLGKC--------------THGSLIRNIS------A------L-----NVIVETSLIDMY 278 (605)
Q Consensus 230 ~p~~~t~~~ll~a~~~~~~~~~a~~--------------~~~~~~~~~~------~------~-----~~~~~~~li~~y 278 (605)
+-+.+..+.......+.=.-..|++ ..+.+.+.++ + | -+..--.|+--|
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 2233333322222222111111111 1112222110 0 0 012233456678
Q ss_pred HhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQ-------GKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLV 350 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 350 (605)
.+.+++++|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|.. --.++.+++.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 899999999999988876554444332223344443 344555555443444433332 122334444455678
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHH-HHHhcCChHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMP-IQ-QNDVVWRSLLS-ASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~-a~~~~g~~~~a~~~~~~ 427 (605)
++..-+++.+. .+=...|...+ .+.++++..|.+.+|+++|-++. .+ .|..+|.+++. +|..++..+.|-.++
T Consensus 376 ddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~-- 451 (557)
T KOG3785|consen 376 DDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM-- 451 (557)
T ss_pred HHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH--
Confidence 88888888887 34444455554 47788999999999999998872 12 35667777665 567888888776554
Q ss_pred HHhhC-CCC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 428 LFQIN-SHH-PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 428 ~~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
++.+ |.+ .......++-|.+++.+--|.+.|+.+...+..|
T Consensus 452 -lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 452 -LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred -HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 4444 222 2334566778889999999999999888766443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-06 Score=73.97 Aligned_cols=166 Identities=11% Similarity=-0.032 Sum_probs=92.1
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLS 342 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 342 (605)
+..++..+...|.+.|..+.|.+-|+... ..+....|....-+|..|++++|...|++....-.-|. ..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 34445555555555555555555555433 22344555555556666666666666666655322221 245666665
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
+..+.|+.+.|..+|++..+ -.+-.......+.....+.|++..|..+++.. ...++..+.-..+..-...||.+.
T Consensus 148 Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 56666666666666666652 11122344555666666666666666666665 223455555555555566666666
Q ss_pred HHHHHHHHHhhCCC
Q 007396 421 GEIAAKNLFQINSH 434 (605)
Q Consensus 421 a~~~~~~~~~~~~~ 434 (605)
+-+.-.++.+.-|.
T Consensus 226 a~~Y~~qL~r~fP~ 239 (250)
T COG3063 226 AQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHHHhCCC
Confidence 66666666665554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-05 Score=77.15 Aligned_cols=195 Identities=8% Similarity=-0.053 Sum_probs=107.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcchHH-HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH---HH
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGV-EPDNFTFP-ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQN---SL 172 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~l 172 (605)
.|..+...+...|+++++...+....+... .++..... .....+...|+++++...++.+++..+. |...++ .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHH
Confidence 355555566666777777666666554321 11211111 1122344568888888888888776433 333333 12
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh
Q 007396 173 INMYGKCEKVEFASAIFKQMDQKS---VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
.......|..+.+.+.++.....+ ...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCH
Confidence 222223455666666665432222 2233444556777888888888888877743 33445555566666666777
Q ss_pred hhHHHHHHHHHHhcCC-ch--HHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 250 DLGKCTHGSLIRNISA-LN--VIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 250 ~~a~~~~~~~~~~~~~-~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
++|...+....+.... ++ ...|..+...+...|++++|..+|++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777766666654321 12 1234455566666666666666666543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-05 Score=88.96 Aligned_cols=323 Identities=10% Similarity=-0.018 Sum_probs=203.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CCC------hh--HHHHHHHHHHHC
Q 007396 143 KLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD----QKS------VA--SWSAIIAAHASN 210 (605)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~------~~--~~~~li~~~~~~ 210 (605)
..|+++.+...++.+-......+..........+...|++++|...++... ..+ .. ....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345666555555443111111223333445556667899999988887642 111 11 122233456689
Q ss_pred CChhHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHhccCChhhHHHHHHHHHHh----cC-CchHHHHhHHHhHHHhc
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEE----SILVSVLSACTHLGALDLGKCTHGSLIRN----IS-ALNVIVETSLIDMYVKC 281 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~ 281 (605)
|++++|...+++....- -..+. .....+...+...|+++.|...+...... |. .........+...+...
T Consensus 466 g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 99999999999876632 12222 23344555667899999999998887743 21 11234556677788899
Q ss_pred CCHHHHHHHHhccCC-------CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhc
Q 007396 282 GCLEKGLCLFRMMAD-------KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE--GLEPD--DVVYVGVLSACSH 346 (605)
Q Consensus 282 g~~~~A~~~f~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~ 346 (605)
|++++|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876431 11 122344555677789999999999887653 11222 2344445567778
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHCCC-C-CCH----HHHHHHHHHHHhc
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTVQHY-----GCVVDLMGRAGMLGEALELIQSMPI-Q-QND----VVWRSLLSASKVH 415 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~a~~~~ 415 (605)
.|+.++|.+.+.....-.........+ ...+..+...|+.+.|.+++..... . ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875311111111111 1122445568999999999877621 1 111 1244566678889
Q ss_pred CChHHHHHHHHHHHhhCCC------CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 416 HNLEIGEIAAKNLFQINSH------HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|+.++|...++++...... ...++..++.+|.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998875311 23456788889999999999999999988754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-05 Score=79.97 Aligned_cols=299 Identities=13% Similarity=0.037 Sum_probs=162.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC--hhHH-HHHHHHHHHC----
Q 007396 138 FKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS--VASW-SAIIAAHASN---- 210 (605)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~-~~li~~~~~~---- 210 (605)
...+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..++..+..+| -..| ..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34556889999999999775444 33356777888899999999999999999998643 3344 4444444222
Q ss_pred -CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh-hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH
Q 007396 211 -GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL-DLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL 288 (605)
Q Consensus 211 -g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 288 (605)
...+....+|+++... -|.......+.-.+.....+ ..+..+.....+.|+|+ +++.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2567778888888764 35544444333323222222 23455556666777543 5555666665443333333
Q ss_pred HHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 289 CLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV--VYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 289 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
+++...... +...+.+.... ....-.|... ++.-+...|...|+.++|..+.+..+. .
T Consensus 164 ~l~~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---h 223 (517)
T PF12569_consen 164 SLVEEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---H 223 (517)
T ss_pred HHHHHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---c
Confidence 333222100 00000000000 0000122221 233334455566666666666666652 2
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC--CC------
Q 007396 367 VPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS--HH------ 435 (605)
Q Consensus 367 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~------ 435 (605)
.|+ ++.|..-...|-+.|++.+|.+.++.. ...+ |..+-+-....+.+.|++++|+.++....+.+- ..
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 343 455666666666666666666666655 2222 333444444455666666666666666655442 10
Q ss_pred -CchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 436 -PSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
......-+.+|.+.|++..|++-+..+.
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0112346677778888777776665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00018 Score=74.62 Aligned_cols=305 Identities=17% Similarity=0.078 Sum_probs=168.6
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHH
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESIL 236 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~ 236 (605)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-.... -.|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~-~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS-EQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-cCCCcchHH
Confidence 3456778888888888888888888888887653 234578888888888888888888887655432 2243 3333
Q ss_pred HHHHHHH-hccCChhhHHHHHHHHHHh--c--CCchHHHHhHHHhHHHhcC-----------CHHHHHHHHhccCCC---
Q 007396 237 VSVLSAC-THLGALDLGKCTHGSLIRN--I--SALNVIVETSLIDMYVKCG-----------CLEKGLCLFRMMADK--- 297 (605)
Q Consensus 237 ~~ll~a~-~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~m~~~--- 297 (605)
...-..| .+.+.++++..+-..+++. + -......|-.+.-+|...- ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333444 3455666666655555541 1 0112223333333333211 123444555544322
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC----------
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIV---------- 367 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---------- 367 (605)
|+...-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|+.+.+....++|..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2211111222345556666666666666655444444555444444455555555555444443333320
Q ss_pred --------------------------------------------------------------------------------
Q 007396 368 -------------------------------------------------------------------------------- 367 (605)
Q Consensus 368 -------------------------------------------------------------------------------- 367 (605)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred ---CC--------hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 368 ---PT--------VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 368 ---p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
|+ ...|....+.+.+.+..++|...+.+. .+.|- ...|......+...|+.++|.+.|...+.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 00 112233444455555555555554444 33332 224444445556667777777777777778887
Q ss_pred CCchHHHHHHHHHHcCChhHHHH--HHHHHHhCC
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAK--IRTEMASKG 466 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~ 466 (605)
++.....++.++...|+..-|.. ++..+.+.+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 77777788888887777666665 666666644
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=93.21 Aligned_cols=201 Identities=10% Similarity=0.020 Sum_probs=170.1
Q ss_pred CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-C-------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 265 ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-C-------QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 265 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
+-+...|-..|......+++++|++++++.... | .-.|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345677888899999999999999999887633 2 347889988888889888999999999873 222357
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC---CHHHHHHHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ---NDVVWRSLLSAS 412 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~ 412 (605)
|..|+..|.+.+..++|-++|+.|.++++ -....|...++.+.+.+.-++|.+++++. ..-| ......-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998777 66788999999999999999999999886 2223 334555566666
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
.++||.+.+..+|+.++...|.....|...+++-.+.|..+.+..+|++..+.++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999988764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.5e-05 Score=86.18 Aligned_cols=357 Identities=7% Similarity=-0.111 Sum_probs=218.4
Q ss_pred CCCChHHHHHHHhhcCCCCccc--HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFD--FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIH 154 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 154 (605)
..|++.+|..........+... .......+...|+++.+..+++.+.......+..........+...|+++++...+
T Consensus 353 ~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l 432 (903)
T PRK04841 353 AQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLL 432 (903)
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555554443322111 11112234456777776666666532211122223333344556779999999998
Q ss_pred HHHHHhCCC------Cc--hhHHHHHHHHHHcCCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHHCCChhHHHH
Q 007396 155 GHVFKVGFE------CD--LFVQNSLINMYGKCEKVEFASAIFKQMDQ----KSV----ASWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 155 ~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~ 218 (605)
..+.+.--. +. ......+...+...|++++|...+++..+ .+. ..++.+...+...|++++|..
T Consensus 433 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~ 512 (903)
T PRK04841 433 ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALA 512 (903)
T ss_pred HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887654111 11 12223334556789999999998887532 222 245666677888999999999
Q ss_pred HHHHHHhCCC-C-CC--ChhHHHHHHHHHhccCChhhHHHHHHHHHHh----cCC---chHHHHhHHHhHHHhcCCHHHH
Q 007396 219 LFGEMNNEKC-W-RP--EESILVSVLSACTHLGALDLGKCTHGSLIRN----ISA---LNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 219 ~~~~m~~~g~-~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~y~~~g~~~~A 287 (605)
.+.+...... . .+ ...++..+...+...|+++.|...+++.... +.. .....+..+...+...|++++|
T Consensus 513 ~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 513 MMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9988764310 0 11 1234455666778899999999998877643 211 1234455666778888999999
Q ss_pred HHHHhccCCC-----C---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCCHHHH
Q 007396 288 LCLFRMMADK-----C---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVY-----VGVLSACSHAGLVNEG 353 (605)
Q Consensus 288 ~~~f~~m~~~-----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~-----~~ll~a~~~~g~~~~a 353 (605)
...+++.... + ...+..+...+...|+.++|...+.+.....-.. ....+ ...+..+...|+.+.|
T Consensus 593 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 672 (903)
T PRK04841 593 EQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAA 672 (903)
T ss_pred HHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHH
Confidence 9988775321 1 2234445667888999999999998885421111 11111 1112344557899999
Q ss_pred HHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCChHHHH
Q 007396 354 LLCFDRMKLEYRIVPT---VQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQND-VVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~a~~~~g~~~~a~ 422 (605)
.+++...... ..... ...+..+..++...|+.++|...+++. +..++. .+...+..++...|+.++|.
T Consensus 673 ~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 673 ANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998776521 11111 111345667788899999999988876 222222 25666667889999999999
Q ss_pred HHHHHHHhhCCC
Q 007396 423 IAAKNLFQINSH 434 (605)
Q Consensus 423 ~~~~~~~~~~~~ 434 (605)
..+.+++++...
T Consensus 752 ~~L~~Al~la~~ 763 (903)
T PRK04841 752 RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHhCc
Confidence 999999988644
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-08 Score=60.14 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=27.8
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 161 GFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.8e-07 Score=88.07 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=169.5
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCe---eeHHHHHHHHHhcCCHHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQ---LTYSVMISGLAMHGQGKEALS 320 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~ 320 (605)
.+.|++..|.-.|+..++.. +.+...|--|.......++-..|+..+++..+-|+ ...-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888887776 44777888888888888888888888887765544 455556667888888889999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 007396 321 IFSEMLREGLE--------PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALEL 392 (605)
Q Consensus 321 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 392 (605)
.++.-.....+ ++...-.. ..+.....+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888653211 00000000 122333345566677777776667678889999999999999999999999
Q ss_pred HHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 393 IQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 393 ~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|+.. .++|+. ..||-|...+....+.++|+..+.+++++.|.-..+...|+-.|...|.+++|.+.|=....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9987 778865 59999999999999999999999999999999888889999999999999999999877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0004 Score=70.76 Aligned_cols=410 Identities=13% Similarity=0.053 Sum_probs=246.2
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCc
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEF 112 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 112 (605)
.|...++.++|....+..++..+. +.+.|..+- -++ ...++++|.+.|..... .|...|--+--.-++.|++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~g---l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLG---LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc-cchhHHHHH---HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 344456677777776666664433 345555544 445 77899999999987643 4566676665556677888
Q ss_pred hHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCchhHHHHHH------HHHHcCCCHHH
Q 007396 113 EEALFLYNEMFERGVEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVGF-ECDLFVQNSLI------NMYGKCEKVEF 184 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li------~~y~~~g~~~~ 184 (605)
+...+.-.+..+. .|. ...|.....+.--.|+...|..+.+...+.-. .|+...+.-.. ....+.|..++
T Consensus 126 ~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 126 EGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 8888888777775 344 34677777777778999999999999887752 45554443332 33457788899
Q ss_pred HHHHHHhcCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-c-cCChhhHHHHHHHH
Q 007396 185 ASAIFKQMDQK--S-VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACT-H-LGALDLGKCTHGSL 259 (605)
Q Consensus 185 A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-~-~~~~~~a~~~~~~~ 259 (605)
|.+.+..-... | ...-.+-...+.+.++.++|..++..+... .||...|...+..+. + .+..+....++...
T Consensus 204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98888765532 2 223334566788999999999999999885 477777766655554 2 33333333555544
Q ss_pred HHhc---CCchHHHHhHHHhHHHhcCCH-HHHHHHHhccCCCC-eeeHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC
Q 007396 260 IRNI---SALNVIVETSLIDMYVKCGCL-EKGLCLFRMMADKC-QLTYSVMISGLAMHGQGKEALSIFSEMLR----EGL 330 (605)
Q Consensus 260 ~~~~---~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~ 330 (605)
.+.- -.|-.... .+++. .++ +..-.++..+.+++ +..+..+...|-.-...+-..++.-.+.. .|.
T Consensus 281 s~~y~r~e~p~Rlpl-svl~~----eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPL-SVLNG----EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred hhcCcccccchhccH-HHhCc----chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 4321 11111111 11111 111 22223333333333 23444444444332222211112222211 111
Q ss_pred ----------CCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCC
Q 007396 331 ----------EPDDV--VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMP 397 (605)
Q Consensus 331 ----------~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 397 (605)
.|... |+..+...+-..|+++.|..+.+... +-.|+ ++.|..=...+...|.+++|..++++..
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34443 44456667788899999999998887 33455 4666666788888999999999998872
Q ss_pred -C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hH--HHHHHHHHHcCChhHHHHHHHHHH
Q 007396 398 -I-QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS-------DY--VLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 398 -~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~--~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+ .||..+-.--..-..+..+.++|.++.....+.+..-.. .| ..=+.+|.+.|++..|++=|..+.
T Consensus 433 elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 433 ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2 355544434444556778889998888887776542100 11 223567788888888776555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=84.60 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=113.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHHhcC
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQH---YGCVVDLMGRAG 384 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g 384 (605)
.+...|++++|++++.+- .+.......+..+...++++.|.+.++.|. .+..|... ..+.+..+.-.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCch
Confidence 456679999999988752 345666677889999999999999999998 33444322 223333333345
Q ss_pred CHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh-hHHHHHHHH
Q 007396 385 MLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW-YDVAKIRTE 461 (605)
Q Consensus 385 ~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 461 (605)
.+.+|.-+|+++ ...++..+.+.+..+....|++++|+.++++.++.+|.++.+...++-+..-.|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999999 44577888999999999999999999999999999999999999999999999998 667788888
Q ss_pred HHhC
Q 007396 462 MASK 465 (605)
Q Consensus 462 m~~~ 465 (605)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-05 Score=73.19 Aligned_cols=370 Identities=12% Similarity=0.078 Sum_probs=223.4
Q ss_pred CCCChHHHHHHHhhcCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 77 HWGSMDYACSIFRQIDE------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
...++..|+.+++--.. .++..| +...+.+.|++++|+..|..+.+.. .|+...+..+.....-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 67788888888765432 122223 4456778899999999999887754 45555566666555667888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWR 230 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 230 (605)
.++-... ..++-....|++.-.|.|+-++-..+-+.+.... .---++.+..-..-.+++|+++|.+.... .
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n 181 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD---N 181 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 8866543 2233334445566667777776666555554321 11223334333445689999999999875 4
Q ss_pred CChhHHHHHHHHH-hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh--cCCHHHH--HHHHhccC----------
Q 007396 231 PEESILVSVLSAC-THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK--CGCLEKG--LCLFRMMA---------- 295 (605)
Q Consensus 231 p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A--~~~f~~m~---------- 295 (605)
|+-...+.-+..| .+..-++.+.+++.-..+.- +.++...|....-..+ .|+..++ .++-+...
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 7777777666555 66777777888877666653 3344444444433333 2332222 12222221
Q ss_pred CCCee---------------------eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hccCC
Q 007396 296 DKCQL---------------------TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC-----SHAGL 349 (605)
Q Consensus 296 ~~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-----~~~g~ 349 (605)
..|.+ .--.++--|.++++.++|..+.+++.- ..|-....-.+..+- .....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 12222 112233447788999999988877642 344443333333221 12223
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007396 350 VNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMP--IQQNDVVWRSLLSASKVHHNLEIGEIAAK 426 (605)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 426 (605)
+.-|.+.|+..- ..+..-| +.--.++...+.-..++++.+-.++.+. +..|...--.+..+....|++.+|+++|-
T Consensus 339 lKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 556677666543 2333322 2223455555666667888888887772 23334444457788899999999999998
Q ss_pred HHHhhCCCCCchHH-HHHHHHHHcCChhHHHHHHHHH
Q 007396 427 NLFQINSHHPSDYV-LLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 427 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 462 (605)
++...+..|..+|. .|+..|.++|+..-|..++-.+
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88777655666664 5788999999999887766433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=73.31 Aligned_cols=373 Identities=9% Similarity=-0.003 Sum_probs=215.5
Q ss_pred CCCChHHHHHHHhhcCCC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH-HHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEP---GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA-LFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~ 152 (605)
+..++++|.+++..-.++ +....+.|...|-...++..|-+.|+++-.. .|...-|.. -...+-+.+.+..|..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 566778888877665543 4455667777788888888888888888764 344333321 1223345566777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHH--H--HHcCCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 153 IHGHVFKVGFECDLFVQNSLIN--M--YGKCEKVEFASAIFKQMD-QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~--~--y~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+...|... ....+..+. + .-..+++..++.++++.+ +.+..+-+.......+.|+++.|++-|+...+-+
T Consensus 100 V~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 100 VAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 77666422 222222111 1 224678888888888888 4555566666666678899999999998877765
Q ss_pred CCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-------------h---------------HHHHhHHHhHHH
Q 007396 228 CWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL-------------N---------------VIVETSLIDMYV 279 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~li~~y~ 279 (605)
+..| ...|+..+. ..+.++.+.|.....+++++|+.. | +..+|.-...+.
T Consensus 175 Gyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 175 GYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 3444 455665554 446688888888888888776421 1 122344444567
Q ss_pred hcCCHHHHHHHHhccCCC-----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADK-----CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
+.|+.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-+..... -...||..++-.||+..-++.|-
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 889999999999999855 56666554322 224445555555555554332 23579999999999999888888
Q ss_pred HHHHHhHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCh---HHHHHHHHHH
Q 007396 355 LCFDRMKLEYRI-VPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQ--NDVVWRSLLSASKVHHNL---EIGEIAAKNL 428 (605)
Q Consensus 355 ~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~---~~a~~~~~~~ 428 (605)
.++.+-.. ... -.+...|+.|=......-..++|.+-++.+...- .......-+.--+..++- ..+.+-+++.
T Consensus 331 DvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~ 409 (459)
T KOG4340|consen 331 DVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDET 409 (459)
T ss_pred HHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 87754321 110 1123334433222233345566655544431000 000011111111111111 1122223333
Q ss_pred HhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 429 FQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+++-. .....-.+.|++..++..+.++|..-.+
T Consensus 410 LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 410 LEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 33211 1334556678888899999999876654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-05 Score=70.06 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=74.5
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhc---cCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRM---MADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL-- 341 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-- 341 (605)
|...+..-..+|...|++..|+.=++. +...++...--+-..+-..|+.+.++...++-.+ +.||.......-
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKK 265 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHH
Confidence 444444445555555555555443332 2233344444444455555555555555555554 445543211100
Q ss_pred -----------HHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HH
Q 007396 342 -----------SACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DV 403 (605)
Q Consensus 342 -----------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~ 403 (605)
......+++.++.+-.+...+ ..|. ...+..+-..+...|++.+|++...+. .+.|| +.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 011122333333333333331 1222 112223334444555566665555444 44444 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
++.--..+|.....++.|+.-++.+.+.++++.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 555555555555556666666666666655543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-05 Score=79.81 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=113.7
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 318 (605)
.+.+......+.+|..+++.+.+... ...-|..+.+.|+..|+++.|+++|-+.. .++-.|..|.+.|++++|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34444555666667766666665432 23345556677777777777777776543 345566677777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCC
Q 007396 319 LSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPI 398 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 398 (605)
.++-.+.. |.......|.+-..-.-..|.+.+|.++|-.+. .|+. -|.+|-+.|..++..++.++-.
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h- 877 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHH- 877 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhC-
Confidence 77665543 233333444444445556677777766654332 2432 4566777777777777776652
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 399 QQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 399 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
|+ ..|...+..-+...|++..|+.-|-+. .-+-.-+++|-..+.|++|.++-+
T Consensus 878 -~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 878 -GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred -hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 22 225555555666667777766655443 234455667777777777766543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-05 Score=74.28 Aligned_cols=370 Identities=11% Similarity=0.050 Sum_probs=218.9
Q ss_pred CCCChHHHHHHHhhcC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQID---EPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~ 152 (605)
..|+++.|..+|-+.. .+|.+.|..-..+|+..|++++|++=-.+-++ +.|+.. .|+-...++.-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 7899999999998754 36788899999999999999999876666655 466654 78888888888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHh------cC-CC------ChhHHHHHHHHHHHC---------
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQ------MD-QK------SVASWSAIIAAHASN--------- 210 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~------m~-~~------~~~~~~~li~~~~~~--------- 210 (605)
-|.+-++... .+...++.|.+++... . .+-+.|.. +. .| .-..|..++..+-++
T Consensus 92 ay~~GL~~d~-~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKDP-SNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcCC-chHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9988877753 3677788888887111 0 11111111 00 00 011233333322111
Q ss_pred -CChhHHHHHHHHH-----HhCCC------CCCC---------h-------------hHHHHHHHHHhccCChhhHHHHH
Q 007396 211 -GLWSECLKLFGEM-----NNEKC------WRPE---------E-------------SILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 211 -g~~~~A~~~~~~m-----~~~g~------~~p~---------~-------------~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
.+...|...+... ...|. ..|. . .-...+.++.-+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 0111111111100 00000 0110 0 11233444444555555566656
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee----------eHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL----------TYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
....... .++.-++....+|...|.+......-+...+.+-. ....+..+|.+.++++.|+..|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 5555554 34555555666666666665554444333222110 11123334555566666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHH
Q 007396 327 REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQ-HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDV 403 (605)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 403 (605)
..-..||..+ +....+++....+... -+.|... -.-.=...+.+.|++.+|...+.++ ...| |..
T Consensus 326 te~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 4433433221 1122233333222221 2223221 1111144567789999999999887 4445 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.|....-+|.+.|++..|+.-.+...+++|+....|..-+.++....+|+.|.+.|.+..+.+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888889999999999999999999999988889888888888999999999998887755
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-05 Score=71.74 Aligned_cols=289 Identities=17% Similarity=0.144 Sum_probs=161.8
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHH-HHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSA-IIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~ 207 (605)
.--+.+++.-+.+..+++.+.+++..-.+...+ +....+.|..+|-...++..|...++++.. |...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 334666666666777777777777666555422 555666677777777777777777777654 22222221 23445
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 287 (605)
-+.+.+.+|+++...|.+. |+...-..-+.+.. .-..+++..+
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~ 131 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAI---------------------------------KYSEGDLPGS 131 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHH---------------------------------hcccccCcch
Confidence 5667777777777766542 22111111111111 1123344444
Q ss_pred HHHHhccC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 007396 288 LCLFRMMA-DKCQLTYSVMISGLAMHGQGKEALSIFSEMLRE-GLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYR 365 (605)
Q Consensus 288 ~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 365 (605)
..+.++.+ +.+..+.+.......+.|++++|.+-|+...+- |..| ...|+..+ +..+.|+.+.|+++..+++ +.|
T Consensus 132 rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIi-eRG 208 (459)
T KOG4340|consen 132 RSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEII-ERG 208 (459)
T ss_pred HHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHH-Hhh
Confidence 44444444 233333333333344455555555555544432 2222 23333332 2223444555555444444 223
Q ss_pred CC-------------CC--------hHHHHHHHH-------HHHhcCCHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 007396 366 IV-------------PT--------VQHYGCVVD-------LMGRAGMLGEALELIQSMPI----QQNDVVWRSLLSASK 413 (605)
Q Consensus 366 ~~-------------p~--------~~~~~~li~-------~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~a~~ 413 (605)
+. || ..+-+.++. .+.+.|+++.|.+-+..||- ..|++|...+.-. -
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n 287 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-N 287 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-c
Confidence 22 11 122233333 35678999999999999952 3466666554322 3
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
..+++..+.+-++-+++++|-.+.++..++-.|++..-++-|..++.+
T Consensus 288 ~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 456677778888888889988888999999999999999999888754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-07 Score=58.00 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=27.3
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888874
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00043 Score=73.76 Aligned_cols=256 Identities=12% Similarity=0.121 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+ .-|+..|..++.++.+.|.+++-..++..+
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik-------adDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK-------ADDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444555554444443 35799999999999999999988754 246778999999999999999999988888
Q ss_pred HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-----------------------CeeeHHHHHHHHHhcCCHH
Q 007396 260 IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-----------------------CQLTYSVMISGLAMHGQGK 316 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~ 316 (605)
.+..-+|. +-+.||-+|++.+++.+-++++..-... ++..|..+...+...|+++
T Consensus 1160 Rkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1160 RKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 87766654 4457999999999998877765422111 2234555566666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.|.+.-++.. +..||-.+-.+|...+.+.-| +|. ..++.....-..-++..|-..|.+++...+++..
T Consensus 1238 ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1238 GAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6665554432 346777777777766554433 232 1223334555667888888888888888888775
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 397 -PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 397 -~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.+. ....|.-|.-.|.+.. .+...+.++-.... ...--+++++..+.-|.+..=++.+..+
T Consensus 1306 LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5432 3345665555555543 33333333322221 1112466777777777777766655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-05 Score=74.12 Aligned_cols=180 Identities=8% Similarity=-0.009 Sum_probs=117.8
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---e---eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---Q---LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV---- 335 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 335 (605)
.....+..+...|.+.|++++|...|+++...+ . ..|..+..+|.+.|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 345566677777888888888888888765322 1 35566777888888888888888888764 33221
Q ss_pred HHHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Q 007396 336 VYVGVLSACSHA--------GLVNEGLLCFDRMKLEYRIVPTVQ-HYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWR 406 (605)
Q Consensus 336 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 406 (605)
++..+..++... |+.++|.+.|+.+... .|+.. .+..+... .. ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHHHH-----------HHHHH
Confidence 344444444443 6677777777777643 23321 22111111 00 00000 00112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+...+...|+.+.|...++++.+..|++ +..+..++.+|...|++++|.++++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556788999999999999999987764 467889999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00014 Score=74.53 Aligned_cols=254 Identities=11% Similarity=0.112 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 179 CEKVEFASAIFKQMDQKSVA--SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
...+.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.++-
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHH
Confidence 34444555555544443332 24444455555555555555554321 1233444555555555554443
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-- 334 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 334 (605)
.+. .|.+..+..|-+-..-.-+.|++.+|+++|-.+..|+ ..|..|-++|..++.+.+..+- .||.
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~-----~aiqmydk~~~~ddmirlv~k~-----h~d~l~ 882 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD-----KAIQMYDKHGLDDDMIRLVEKH-----HGDHLH 882 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch-----HHHHHHHhhCcchHHHHHHHHh-----Chhhhh
Confidence 322 2223334444444444555555555555555554443 2355566666666666655543 2332
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCC---CC-HHHHHHHH-
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQ---QN-DVVWRSLL- 409 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~-~~~~~~ll- 409 (605)
.|-..+..-+...|++..|...|-+.. -|.+-+.+|-..+.+++|.++-+.-+-. .. ...|.--+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 455566667777888888888776554 2567788898899999998887765211 11 12343222
Q ss_pred -----HHHHhcCChHHHHHH-------------HHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 410 -----SASKVHHNLEIGEIA-------------AKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 410 -----~a~~~~g~~~~a~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+-++|-++.|... .+...+ ..-+.....+..-+...|++++|.+-+-+..+.+
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 223455555554433 222222 1234566777778889999999988887776654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=71.45 Aligned_cols=118 Identities=5% Similarity=0.012 Sum_probs=92.6
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HhcCC--hHHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSAS-KVHHN--LEIG 421 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~-~~~g~--~~~a 421 (605)
.++.+++...++...+ .-+.+...|..+...|...|++++|.+.|++. ...|+ ...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566677666766663 23456778888888888889999998888887 55564 44777777664 56666 5899
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+++++++.+|+++..+..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999988754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00086 Score=71.59 Aligned_cols=248 Identities=10% Similarity=0.051 Sum_probs=144.2
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 107 VKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 107 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
..++-+++|..+|+..- .+......++. ..+++++|.++-+.. -.+.+|+.+..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 34455666666666542 23333333333 234555555444333 24567777777777777777777
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH-----HHHH
Q 007396 187 AIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG-----SLIR 261 (605)
Q Consensus 187 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~-----~~~~ 261 (605)
+-|-+. .|+..|..+|....+.|.|++-.+.+...++.. -.|... +.++-||++.+++.+-+++.. .+..
T Consensus 1125 eSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1125 ESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQ 1199 (1666)
T ss_pred HHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHH
Confidence 766443 355667777777777777777777776665554 344433 345666666666554443321 0000
Q ss_pred hc--------------CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 262 NI--------------SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 262 ~~--------------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
.| +-.++.-|.-|...+...|+++.|...-++. .++.+|.-.-.+|...+.+.-| +|-.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCG 1272 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICG 1272 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcC
Confidence 00 0012334445555555666666665544332 2456888888888776655433 3332
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc
Q 007396 328 EGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRA 383 (605)
Q Consensus 328 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 383 (605)
..+-....-..-++.-|...|-+++-..+++... |+.. ....|+-|.-.|++-
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc
Confidence 2233445567778999999999999998887655 5432 345677777777764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0014 Score=66.17 Aligned_cols=335 Identities=15% Similarity=0.133 Sum_probs=185.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--c
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNS--LINMYG--K 178 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 178 (605)
++-+.++|++++|+..-.++...+ +-|...+..=+-+..+.+.+++|..+.+ ..+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 345566778888888888887754 2233445555556667777777774332 2221 111111 223343 7
Q ss_pred CCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHhccCChhhHHHHH
Q 007396 179 CEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--ESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
.+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+++ .+| ...-..++.+-.... +
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d~~~r~nl~a~~a~l~----~---- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQDEERRANLLAVAAALQ----V---- 161 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHhhh----H----
Confidence 7888888888886665555566666667788899999999999887765 332 222223332221110 0
Q ss_pred HHHHHhcCCchHHHHhH---HHhHHHhcCCHHHHHHHHhcc--------CCCCee----------eHHHHHHHHHhcCCH
Q 007396 257 GSLIRNISALNVIVETS---LIDMYVKCGCLEKGLCLFRMM--------ADKCQL----------TYSVMISGLAMHGQG 315 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~ 315 (605)
..+......| ..+|.. ....+...|++.+|+++++.. ...|.- .---|.-.+...|+-
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111111111 112222 334566788999999888776 211111 122244467788999
Q ss_pred HHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHH--HHHHHHHhHHhc----------CCCCChHHHHHHHHH
Q 007396 316 KEALSIFSEMLREGLEPDDV----VYVGVLSACSHAGLVNE--GLLCFDRMKLEY----------RIVPTVQHYGCVVDL 379 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~~~~~~----------~~~p~~~~~~~li~~ 379 (605)
++|..++...++.. .+|.. .-|.|+ +...-.++-. ++..++...... .-.-...--++++.+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988764 34442 222222 2222222211 222222211100 000011112344444
Q ss_pred HHhcCCHHHHHHHHHHCCC-CCCHHHHHHHHHHH-Hhc-CChHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHcCChhHH
Q 007396 380 MGRAGMLGEALELIQSMPI-QQNDVVWRSLLSAS-KVH-HNLEIGEIAAKNLFQINSHH-PSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~a~-~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 455 (605)
| .+.-+.+.++-...+. .|. ..+.+++..+ ... .....+..++....+..|.+ ..+...++......|+|+.|
T Consensus 319 ~--tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred H--hhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4 3556778888877753 344 3444454443 222 24677778888887777875 34555677788899999999
Q ss_pred HHHHH
Q 007396 456 AKIRT 460 (605)
Q Consensus 456 ~~~~~ 460 (605)
.+++.
T Consensus 396 ~~il~ 400 (652)
T KOG2376|consen 396 LEILS 400 (652)
T ss_pred HHHHH
Confidence 99999
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.35 E-value=5e-05 Score=71.76 Aligned_cols=182 Identities=13% Similarity=0.035 Sum_probs=126.7
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc--hHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---ee---eH
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL--NVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QL---TY 302 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~---~~ 302 (605)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+++.+.+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345677778888899999999999999998765321 23467788999999999999999999886332 22 35
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 007396 303 SVMISGLAMH--------GQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHY 373 (605)
Q Consensus 303 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 373 (605)
..+..++.+. |+.++|.+.|+++.+. .|+.. ....+... .. . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HHH
Confidence 5555566554 7889999999999874 45442 22111111 00 0 00000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM----PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
..+...|.+.|++++|...+++. |-.|. ...|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788999999999988887 22332 45888899999999999999998888876654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-05 Score=68.16 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC
Q 007396 320 SIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI 398 (605)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 398 (605)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34443 34455666777777777777777762 12235666777777777777777777777776 34
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 399 QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 399 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
.| +...|..+..++...|+.++|+..++++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 4456777777777777777777777777777777777665555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=80.39 Aligned_cols=228 Identities=8% Similarity=0.060 Sum_probs=166.1
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhc-C---CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-C-eeeHHH
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNI-S---ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-C-QLTYSV 304 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~~ 304 (605)
-....|...|.-..+.++++.|+++.+++++.= + +.-..+|.+++++-..-|.-+...++|++..+- | ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 345667777777788888888888888877531 1 223467888888888888888888999888754 3 356888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT---VQHYGCVVDLMG 381 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~ 381 (605)
|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+ .-|. .....-.+++-.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHh
Confidence 888899999999999999999875 444557888888888888888899999888874 2343 445566677778
Q ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCc-hHHHHHHHHHHcCChhHHH
Q 007396 382 RAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPS-DYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~ 456 (605)
+.|+.+.+..+|+.. .-.| ....|+.++..-.++|+.+.++.+|+++..+... ... .|.-.+..--..|+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 889999999999887 2223 4558999999999999999999999999887632 332 3334444334446655555
Q ss_pred HHHHHH
Q 007396 457 KIRTEM 462 (605)
Q Consensus 457 ~~~~~m 462 (605)
.+-.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=68.36 Aligned_cols=95 Identities=6% Similarity=-0.153 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
.+..+...+.+.|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++..+..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4556788889999999999999987 5556 4568999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 007396 450 QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 450 g~~~~a~~~~~~m~~~~ 466 (605)
|+.++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998755
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0017 Score=67.99 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred hhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-C--------CCCCcc
Q 007396 63 PFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFER-G--------VEPDNF 132 (605)
Q Consensus 63 ~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~ 132 (605)
..+--+++. ..+| .-|++|.|.+-..-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .
T Consensus 726 ~~TRkaml~-FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 726 ESTRKAMLD-FSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred HHHHHhhhc-eeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 333344441 2677 9999999988777664 4567999999999999998888777776432 1 1122 2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHCC
Q 007396 133 TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKS-VASWSAIIAAHASNG 211 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g 211 (605)
+=.-+.-.....|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-..-. -.||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22222223457799999999999876553 33456777899999998865432211 125555555566678
Q ss_pred ChhHHHHHHHHH
Q 007396 212 LWSECLKLFGEM 223 (605)
Q Consensus 212 ~~~~A~~~~~~m 223 (605)
+.+.|++.|++.
T Consensus 873 Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 873 DIEAALEYYEKA 884 (1416)
T ss_pred cHHHHHHHHHhc
Confidence 888888888764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-05 Score=77.76 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=169.3
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
+++|--..-..+...+.++|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 445556666788899999999999999999875 788899999999999999999988877 5788899998888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
..-...-+++|.++++....+. -..+.....+.++++++.+.|+.- .+.|- ..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8877778899999988765321 111122233468899999988764 55553 4588888888899999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYE 500 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (605)
|.+.|.....++|++...++.+..+|.+.|+-.+|...+++..+-+.. +|.-+.|-.+ ++-+ -++.+++.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENyml--vsvd--vge~eda~~ 608 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYML--VSVD--VGEFEDAIK 608 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhh--hhhh--cccHHHHHH
Confidence 999999999999999999999999999999999999999999887743 3554444222 2222 245566665
Q ss_pred HHHHH
Q 007396 501 MIHQM 505 (605)
Q Consensus 501 ~l~~l 505 (605)
...++
T Consensus 609 A~~rl 613 (777)
T KOG1128|consen 609 AYHRL 613 (777)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0018 Score=61.03 Aligned_cols=300 Identities=11% Similarity=0.044 Sum_probs=187.4
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCcchHH-HHHHHHHccCChHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLI---RGFVKEVEFEEALFLYNEMFERGVEPDNFTFP-ALFKACAKLQALKEGMQ 152 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~ 152 (605)
..|++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .-...+.+.|.+++|..
T Consensus 50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHH
Confidence 566777777777777666666666654 356666777777766666665 356532111 11123456677777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE 232 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~ 232 (605)
-|+.+++.... .. ....++.+.-..++-+.+ ...+..+...|+...|+.....+.+.. +.|
T Consensus 128 DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd 188 (504)
T KOG0624|consen 128 DFDQVLQHEPS--NG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ--PWD 188 (504)
T ss_pred HHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC--cch
Confidence 77777665422 11 011112221112221111 123444556788888888888887753 556
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCee------eHHHH-
Q 007396 233 ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQL------TYSVM- 305 (605)
Q Consensus 233 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~------~~~~l- 305 (605)
...+..-..+|...|.+..|..=+..+.+..-+ +....--+-..+-+.|+.+.++...++..+-|+. .|-.+
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 777777777778888888777666666665533 4444445667777888888888888877654432 12211
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHH
Q 007396 306 --------ISGLAMHGQGKEALSIFSEMLREGLEPDDV---VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHY 373 (605)
Q Consensus 306 --------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 373 (605)
+......+++.++++..+...+....-..+ .+..+-.++...|.+.+|.+.-.+.. .+.|+ +.++
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l 344 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHH
Confidence 123456788888888888877643321223 34445566778899999999888887 55665 7888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
.--..+|.-...+++|..-|+.. ...++
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 88888999888999999999887 44443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00028 Score=70.38 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=202.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHcCCCH
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECD-LFVQNSLINMYGKCEKV 182 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 182 (605)
.+....|+++.|+.+|-+..... ++|...|+.-..+++..|++++|.+=-.+.++.. |+ ..-|+.+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 45567899999999999988765 4478889999999999999999887666666554 44 45688888888888999
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHH--HHhCCCCCCCh--------hHHHHHHHHHhccC--
Q 007396 183 EFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGE--MNNEKCWRPEE--------SILVSVLSACTHLG-- 247 (605)
Q Consensus 183 ~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~g~~~p~~--------~t~~~ll~a~~~~~-- 247 (605)
++|...|.+-.+. |...++-+..++.-.. .+.+.|.. |.. + +.-++ .+|..++...-+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~-~-l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHE-K-LANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHH-H-hhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999876543 4556776776662110 01111110 000 0 01111 12222222221100
Q ss_pred -----ChhhHHHHHHHHHH--------h-------cCCc----------------------hHHHHhHHHhHHHhcCCHH
Q 007396 248 -----ALDLGKCTHGSLIR--------N-------ISAL----------------------NVIVETSLIDMYVKCGCLE 285 (605)
Q Consensus 248 -----~~~~a~~~~~~~~~--------~-------~~~~----------------------~~~~~~~li~~y~~~g~~~ 285 (605)
+.....+.+..+.. . +..| -..-...+.++.-+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 00000111110000 0 0000 0112344555555666666
Q ss_pred HHHHHHhccCCC--CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CH----HHHHHHHHHHhccCCHHHHHHHH
Q 007396 286 KGLCLFRMMADK--CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP--DD----VVYVGVLSACSHAGLVNEGLLCF 357 (605)
Q Consensus 286 ~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~----~t~~~ll~a~~~~g~~~~a~~~~ 357 (605)
.|.+-++....- ++.-++....+|...|.+.+....-....+.|..- |. ..+..+..++.+.++.+.+..+|
T Consensus 242 ~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 242 TAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 666666654432 23334555566777777777666666655544321 10 12222334566667777888877
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
.+...++. .|+ .+.+....+++....+.. -+.|+.. --..-...+.+.|++..|...+.++++.+|+|
T Consensus 322 ~kaLte~R-t~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 322 QKALTEHR-TPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHHhhhhc-CHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 77664322 222 223333444444444443 2344432 22333566889999999999999999999999
Q ss_pred CchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 436 PSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+..|...+-+|.+.|.+..|.+=-+...+.+
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999998777666653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=75.33 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=170.0
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHH
Q 007396 162 FECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLS 241 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 241 (605)
++|--.....+...+..+|-...|..+|+++ ..|.-+|-.|...|+..+|..+..+-.+ . +||...|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-K--DPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-C--CCcchhHHHhhh
Confidence 3444456667788899999999999999986 5788899999999999999999988777 3 799999999998
Q ss_pred HHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHH
Q 007396 242 ACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 242 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 318 (605)
...+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+-+ ..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 888887788888887765432 11222222334788999999998655443 45788888888889999999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 319 LSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+.. +.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999988876 56766 579999999999999999999999888 455 455666777777788889999999988877
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00037 Score=68.16 Aligned_cols=177 Identities=13% Similarity=0.043 Sum_probs=102.3
Q ss_pred HHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 284 LEKGLCLFRMMADK---CQLTYSVMISGLAMHGQG--KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 284 ~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
+++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+... -|..+|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555544322 233444443333344432 455666666665321 134556655556666666777777776
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhc---CC----HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHH
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRA---GM----LGEALELIQSM-PIQQ-NDVVWRSLLSASKVH----HNLEIGEIAA 425 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~----g~~~~a~~~~ 425 (605)
++.+. . .-+...|+.....+.+. |. .+++.++..++ ...| |...|+-+...+... ++..+|...+
T Consensus 167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66632 1 22334444443333332 22 23556665443 5555 445888888888763 3456688888
Q ss_pred HHHHhhCCCCCchHHHHHHHHHHcC------------------ChhHHHHHHHHHH
Q 007396 426 KNLFQINSHHPSDYVLLSNMYARAQ------------------RWYDVAKIRTEMA 463 (605)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 463 (605)
.++.+.+|.++.....|++.|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888888889999998632 2366888888774
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00018 Score=76.54 Aligned_cols=371 Identities=11% Similarity=0.017 Sum_probs=202.8
Q ss_pred Ccc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHHccCChH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDNFTFPALFKACAKLQALK 148 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~ 148 (605)
..| ...++..|.+.|+...+ .+..+|..+...|++..+++.|..+.-..-+.. ...-...|..+.-.+...++..
T Consensus 500 ~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h 579 (1238)
T KOG1127|consen 500 QIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH 579 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence 666 55577788888887665 456678888888888888888887732221110 0000111222233345567777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHH---HHHHHHHCCChhHHHHHHHHHHh
Q 007396 149 EGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSA---IIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 149 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
.+..-|+...+..+. |...|..|..+|..+|++..|.++|++...-++.+|-. ....-+..|.+.+|+..+.....
T Consensus 580 ~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 580 GAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 787778777777644 77888888888888888888888887776544443322 22334567888888888877654
Q ss_pred CCC-----CCCChhHHHHHHHHHhccCChhhHHHHHHHH-------HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 226 EKC-----WRPEESILVSVLSACTHLGALDLGKCTHGSL-------IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 226 ~g~-----~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
... ..--..++..+...+...|-...+..+++.. .......+...|..+ .+|...|-.
T Consensus 659 ~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q 728 (1238)
T KOG1127|consen 659 AFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQ 728 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHH
Confidence 210 0001122222222222223222232222222 222212222222222 223333433
Q ss_pred cCCCCee--eHHHHHHH-HHhcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------c-CCHHHHHHH
Q 007396 294 MADKCQL--TYSVMISG-LAMHGQG---K---EALSIFSEMLREGLEPDDVVYVGVLSACSH-------A-GLVNEGLLC 356 (605)
Q Consensus 294 m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~-g~~~~a~~~ 356 (605)
.. ++.+ .+..++.. +-..+.. + -+.+.+-.-++ ...+..+|..|...|.+ . .+...|...
T Consensus 729 ~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c 805 (1238)
T KOG1127|consen 729 EE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRC 805 (1238)
T ss_pred hc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHH
Confidence 33 3311 11111111 1111111 1 01111111111 11123344444433322 1 223466667
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 357 FDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+...++ -...+...|+.|--+ +..|++.-|.-.|-+- -..| ...+|..+.-.|..+.|++.|...|.+...++|.
T Consensus 806 ~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 806 CKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 766663 122344555555444 6667777777766544 2334 4568988888899999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
|...+.-........|+.-++..+|..
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888887777777778888888888776
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.2e-05 Score=74.73 Aligned_cols=223 Identities=12% Similarity=0.042 Sum_probs=166.3
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHH
Q 007396 206 AHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLE 285 (605)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 285 (605)
-+.++|+..+|.-.|+...+.. +-+...|..|....+..++-..|...+.+..+.. +-|..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3567888888888888887765 4566777777777777778788888888887776 447777888888888888888
Q ss_pred HHHHHHhccCCCC-eeeHHHHH---------HHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007396 286 KGLCLFRMMADKC-QLTYSVMI---------SGLAMHGQGKEALSIFSEMLR-EGLEPDDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 286 ~A~~~f~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
.|...++.-.... ...|...- ..+.......+..++|-++.. .+.++|......|.-.|.-.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887652110 00000000 122222334456666666654 454467777777777788899999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 355 LCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 355 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
..|+.+. .+.| |...||.|...++...+.++|...|++. .++|+-+ ++..|.-+|...|.+++|...|=.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999998 4456 5678999999999999999999999998 8889865 8888999999999999999999888877
Q ss_pred CCC
Q 007396 432 NSH 434 (605)
Q Consensus 432 ~~~ 434 (605)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=53.73 Aligned_cols=35 Identities=54% Similarity=0.851 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN 131 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 131 (605)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-06 Score=52.56 Aligned_cols=34 Identities=50% Similarity=0.914 Sum_probs=31.2
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (605)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00014 Score=78.50 Aligned_cols=139 Identities=8% Similarity=0.026 Sum_probs=112.3
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 376 (605)
++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 356777788888999999999999999987 678764 666777888999999999999998873 333356777888
Q ss_pred HHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 377 VDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|...|+++.+...+-...|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88899999999999999998 23444 568889999999999999999999999888655444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.1e-05 Score=63.76 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
....-.+...+...|++++|..+|+-+ .+.|. ..-|-.|..+|...|++++|+..+.++..++|+++.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445566677899999999999988 45564 4588999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 007396 448 RAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~ 464 (605)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998875
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00026 Score=64.32 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=115.7
Q ss_pred HHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 353 (605)
-+-.|.+.|+++......+.+..+. ..|...++.+++...+++..+.. ..|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4557888888888766654433221 01223566788888888877742 34567888888899999999999
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHH-HHhcCC--HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 354 LLCFDRMKLEYRIVP-TVQHYGCVVDL-MGRAGM--LGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
...|++..+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999883 334 57778888876 467777 59999999998 55664 55888888899999999999999999
Q ss_pred HHhhCCCCCchH
Q 007396 428 LFQINSHHPSDY 439 (605)
Q Consensus 428 ~~~~~~~~~~~~ 439 (605)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998866544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00054 Score=74.77 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=130.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCC
Q 007396 133 TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGL 212 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 212 (605)
.+..|+..+...+++++|.++.+...+..+. ....|-.+...|...++.+++..+ .++.......+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~ 98 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccc
Confidence 4555566665666666666666654444321 122222222244455554443333 23333334444
Q ss_pred hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 213 WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 213 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
+.-+..+...|... .-+...+-.+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.
T Consensus 99 ~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 WAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 43333444444442 2344466666677777777777777777777766 55788888888888888 8888888776
Q ss_pred ccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH
Q 007396 293 MMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQH 372 (605)
Q Consensus 293 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 372 (605)
+.. ..|...+++.++.++|.++... .|+...+. .++.+.+....+..--..+
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHHH
Confidence 553 3367777888888888888773 44433221 1222222222222223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
+--+..-|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 445555666667777777777766 4444 3335555555553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0014 Score=64.10 Aligned_cols=221 Identities=13% Similarity=0.007 Sum_probs=104.4
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChh-HHHHHHHHHhccC-ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEES-ILVSVLSACTHLG-ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCL 284 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 284 (605)
+...++.++|+.++.++.+. .|+.. .+..--.++...+ .++++...++.+.+.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33444555555555555542 23222 2222222223333 3455555555555443 22333444443344444432
Q ss_pred --HHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CC----HHH
Q 007396 285 --EKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA---GL----VNE 352 (605)
Q Consensus 285 --~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~ 352 (605)
+++..+++.+.+ +|..+|+...-.+...|+++++++.+.++++.+.. |...|+.....+.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 445555555442 23455666666666666666777777766664433 233343333333332 11 234
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC----------
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA----GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHH---------- 416 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g---------- 416 (605)
...+...+.. -.+-|...|+.+..+|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 5555544442 1122445565555555552 2334566666554 3333 3335555666554321
Q ss_pred --------ChHHHHHHHHHHHhhCCC
Q 007396 417 --------NLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 417 --------~~~~a~~~~~~~~~~~~~ 434 (605)
..+.|..+++.+.+.+|-
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcH
Confidence 235677777776555553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00038 Score=63.39 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHH
Q 007396 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSL 408 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 408 (605)
.|+......+-.++...|+-+....+...... .-..+.......+....+.|++.+|...|.+. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433224455566666777777666665542 22334455555777777888888888888777 334456678777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+|.+.|+.+.|...+.+.+++.|.++..++.|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7788888888888888888888888888888888888888888888888877766543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.1e-06 Score=51.31 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP 129 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 129 (605)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.028 Score=60.08 Aligned_cols=379 Identities=14% Similarity=0.126 Sum_probs=180.1
Q ss_pred CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI 153 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (605)
+.|+.++|..+++.... .|..|...+-..|...++.++|..+|+..... -|+......+..++.+.+++.+-.++
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432 24555666666666666667777776666553 35555555566666666655554433
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCCC----------HHHHHHHHHhcCCCC-h----hHHHHHHHHHHHCCChhHHHH
Q 007396 154 HGHVFKVGFECDLFVQNSLINMYGKCEK----------VEFASAIFKQMDQKS-V----ASWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 154 ~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~m~~~~-~----~~~~~li~~~~~~g~~~~A~~ 218 (605)
--++-+. ++.+...+=++++.+...-. +.-|.+.++.+.+.+ . .-.-.-....-..|.+++|++
T Consensus 133 a~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~ 211 (932)
T KOG2053|consen 133 ALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE 211 (932)
T ss_pred HHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH
Confidence 3333332 22344444445555443211 233445555544332 1 001111122334566666666
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----------------cC
Q 007396 219 LFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----------------CG 282 (605)
Q Consensus 219 ~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----------------~g 282 (605)
++..=.......-+...-+--+.-+...+++.+..++-.++...|.+. |...++.+.+ .+
T Consensus 212 ~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~ 287 (932)
T KOG2053|consen 212 FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSK 287 (932)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 663322221022233333344555556666666666666666665332 3332222221 11
Q ss_pred CHHHHHHHHhccCCC-CeeeHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 283 CLEKGLCLFRMMADK-CQLTYSVMISGLA---MHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 283 ~~~~A~~~f~~m~~~-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
.++...+..++.... .--.|-+-+.++. .-|+.+++...|-+- -|-+| .|..=+..|...=..++-..++.
T Consensus 288 ~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~ 362 (932)
T KOG2053|consen 288 SLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMS 362 (932)
T ss_pred hHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHH
Confidence 122222222111111 1112222222222 335555544433222 12232 11112222222222333333333
Q ss_pred HhHHhcCCCCChH-------HHHHHHHHHHhcCCH-----HHHHHHHHHC------C------CCCCH---------HHH
Q 007396 359 RMKLEYRIVPTVQ-------HYGCVVDLMGRAGML-----GEALELIQSM------P------IQQND---------VVW 405 (605)
Q Consensus 359 ~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m------~------~~p~~---------~~~ 405 (605)
.... ..++.. -+.+.+....-.|.+ +.-..++.+. + .-|+. .+.
T Consensus 363 ~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 363 KLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred Hhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 3321 111111 122333332233321 1222222221 1 11221 145
Q ss_pred HHHHHHHHhcCChH---HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 007396 406 RSLLSASKVHHNLE---IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQS 470 (605)
Q Consensus 406 ~~ll~a~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 470 (605)
+.|+..|++.++.. +|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+.-+.|..+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 67778888887754 567777777788888888888999999999999999999998877777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00041 Score=63.15 Aligned_cols=152 Identities=11% Similarity=0.089 Sum_probs=93.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
.-..+...|+-+....+..+.... -.-|..............|++.+|...|++... .-++|...|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 444555566666666555554321 111223333455666666777777777766652 44556677777777777777
Q ss_pred CHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 385 MLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
++++|..-|.+. .+.|+ ....+.|.-.+.-.|+.+.|+.++.......+.++..-..|..+....|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777776666555 33443 3456666666677777777777777776666666666666777777777777776554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-05 Score=63.73 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...+++..+.+|.++..+..++..|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345556667777888888888888776 4344 45577777778888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.++...+.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8999999988888877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00035 Score=69.79 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=101.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455677777888999999999999843 254 4556788888888888999988887 3344 4556666667788
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
..++.+.|+.+++++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=49.82 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=26.7
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (605)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00072 Score=66.95 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=80.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 421 (605)
....|..++|+..++.+.. ..+-|+.......+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456777777777777663 33344555566667777777777777777776 45565 34666666777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+..++.....+|+++..|..|..+|...|+..++...+.++.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 777777777777777777777777777777777666665543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.005 Score=61.23 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=84.7
Q ss_pred CCCChHHHHHHHhhcCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 77 HWGSMDYACSIFRQIDE------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
-..++.+++..-+.++. |+...+...+.+......-..+-.++. +... ..-...-|...+.. ...|+++.|
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~~-~~~~~~d~A 325 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQT-YLAGQYDEA 325 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHHH-HHhcccchH
Confidence 34566777777777765 233334444444333322222222222 2221 01112224433332 245667777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KS-VASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+..++.+++.-+ -|+.......+.+.+.++.++|.+.|+.+.. |+ ...+-.+..+|.+.|++++|+.+++......
T Consensus 326 ~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 326 LKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 777776665532 2555555566666666666666666666653 22 3345555666666666666666666665543
Q ss_pred CCCCChhHHHHHHHHHhccCCh
Q 007396 228 CWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 228 ~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
+-|...|..+..+|...|+.
T Consensus 405 --p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 405 --PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred --CCCchHHHHHHHHHHHhCch
Confidence 33444444444444444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0091 Score=62.80 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=75.5
Q ss_pred chhhccccccccCcc-CCCChHHHHHHHhhcCC-------------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007396 62 NPFCASNLVATCALS-HWGSMDYACSIFRQIDE-------------PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGV 127 (605)
Q Consensus 62 ~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~-------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 127 (605)
+..+|..+. .|+ +..++|-|.-.+..|.. ++ ..=....-.-.+.|..++|+.+|++-.+
T Consensus 756 S~~vW~nmA---~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 756 SDSVWDNMA---SMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhHHHHHHH---HHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 456778888 899 98889888877777753 21 1111111223456889999999998876
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
|..+=+.|-..|.+++|.++-+.=-+..+. .+|..-..-+-..++.+.|++.|++..
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 334445566779999998876543222222 344444455556788888888887764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0018 Score=70.03 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
++..+-.|.....+.|.+++|..+++...+ +.|| ......+..++.+.+.+++|....+...+.. +.+....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 466677777777888888888888888777 4555 4455666677777777777777777777765 3355666667
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL 341 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (605)
..++.+.|++++|..+|++...++ ..+|.....++...|+.++|...|++..+. ..|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 777777777777777777766433 345666666777777777777777777653 344445555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00034 Score=69.83 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccC
Q 007396 168 VQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLG 247 (605)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~ 247 (605)
...+|+..+...++++.|.++|+++.+.++..+..++..+...++..+|++++.+..... +-|...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcC
Confidence 344566667778899999999999988777777778888888888899999999888653 445555555556677778
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA 295 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 295 (605)
+++.|..+.+++.+.. +.+-.+|..|...|.+.|+++.|+..++.++
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888887765 3455677778888888888888887777765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0034 Score=67.31 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=56.8
Q ss_pred HHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSM-PIQ-QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.|...+++. ... .+...|+.|.-. ...|++.-+...|=+....+|.+..+|..+.-.+....+++.|...|......
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 455556554 222 345577766555 66678888888888888888888888888888888888888888888877764
Q ss_pred C
Q 007396 466 G 466 (605)
Q Consensus 466 ~ 466 (605)
.
T Consensus 880 d 880 (1238)
T KOG1127|consen 880 D 880 (1238)
T ss_pred C
Confidence 4
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.015 Score=53.34 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=97.8
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD 334 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 334 (605)
+.+.+.......+......-...|.+.|++++|++.......-+....| ...+.+..+.+-|.+.+++|++- .+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444433444344444445677777888887777763322322222 23355666777777777777752 244
Q ss_pred HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHH
Q 007396 335 VVYVGVLSACS----HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSL 408 (605)
Q Consensus 335 ~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 408 (605)
.|.+-|..++. ..+.+.+|.-+|++|.. ...|++.+.+.+.......|++++|..++++. ....+..+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 56665555543 33456777777777763 34566666666666666777777777777665 222233444444
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhhCCCCC
Q 007396 409 LSASKVHH-NLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 409 l~a~~~~g-~~~~a~~~~~~~~~~~~~~~ 436 (605)
+..-...| +.+.-.+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44333333 33444556666666666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=47.13 Aligned_cols=31 Identities=48% Similarity=0.839 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGV 127 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 127 (605)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-05 Score=46.48 Aligned_cols=31 Identities=45% Similarity=0.725 Sum_probs=24.7
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0005 Score=53.61 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
+..+...+.+.|++++|...+++. ...|+ ...+..+...+...++++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33443 3567777778888899999999999999888888888888899999999
Q ss_pred ChhHHHHHHHHHHhC
Q 007396 451 RWYDVAKIRTEMASK 465 (605)
Q Consensus 451 ~~~~a~~~~~~m~~~ 465 (605)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888877653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.004 Score=56.94 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=148.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
|+-+.-.|.+..++..-...... +-+...-.-+-.+|...|...... ..+.... .+.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcch
Confidence 34455667888877666554332 234444455556666666544322 1222222 2223333323332333344
Q ss_pred HHHHH-HHHhccCCCCe---eeHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 284 LEKGL-CLFRMMADKCQ---LTYS-VMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 284 ~~~A~-~~f~~m~~~~~---~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
.++-. ++.+.+..+.. .+|. .-...|+..|++++|++...... ..+....+ ...+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33332 33333333221 1222 22345888999999999887621 22222222 233456678889999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHH----hcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMG----RAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
.|.. -.+..+.+.|..++. -.+.+.+|.-+|++| ...|+..+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 8873 134455565665554 346788999999999 367888899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCChhHHH-HHHHHHHh
Q 007396 433 SHHPSDYVLLSNMYARAQRWYDVA-KIRTEMAS 464 (605)
Q Consensus 433 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 464 (605)
++++.+...++-.-.-.|+-.++. +.+.+.+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999888888887777788765543 44444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0019 Score=54.86 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC
Q 007396 321 IFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI 398 (605)
Q Consensus 321 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 398 (605)
.+++... ..|+. .....+...+...|++++|...|+.+.. ..+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 44543 3455666777888999999999988874 22346778888888999999999999988877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 399 QQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 399 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.| +...+..+...+...|+.+.|...+++..+.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 4557777888889999999999999999999987654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=55.93 Aligned_cols=114 Identities=10% Similarity=0.050 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~ 420 (605)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666664332221 1223333445566667777777766665 112332 133344555666777777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
|+..++... ..+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777765522 1222445566777777777777777777764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.008 Score=54.58 Aligned_cols=163 Identities=14% Similarity=0.131 Sum_probs=112.2
Q ss_pred HhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 007396 271 ETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVM---ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA 347 (605)
Q Consensus 271 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (605)
|..++-+...+|+.+.|...++.+..+=+-++... ..-+-..|++++|+++++.+.+.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 44455555667777777777776543222222111 112445788999999999998865 44556776655555666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHH---HhcCChHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSAS---KVHHNLEIGE 422 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~---~~~g~~~~a~ 422 (605)
|..-+|.+-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|... .+..+...+ ....+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788887777774 56678999999999999999999999999998 4455433 444554443 3345788899
Q ss_pred HHHHHHHhhCCCCC
Q 007396 423 IAAKNLFQINSHHP 436 (605)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (605)
..+++.+++.|.+.
T Consensus 212 kyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 212 KYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHhChHhH
Confidence 99999999988544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=8e-05 Score=57.30 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 383 AGMLGEALELIQSM-PIQQ---NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666677766666 2222 344555567777777777777777777 555666656666778888888888888887
Q ss_pred HHH
Q 007396 459 RTE 461 (605)
Q Consensus 459 ~~~ 461 (605)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.1 Score=52.85 Aligned_cols=337 Identities=9% Similarity=0.037 Sum_probs=198.1
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHH
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIA 205 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~ 205 (605)
+-|..+|..||+-+... ..++++..+++++..- +.....|..-|..-.+..+++..+++|.+... -++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44778999999977655 9999999999998663 44678899999999999999999999998764 47778888776
Q ss_pred HHHH-CCChh----HHHHHHHHH-HhCCCCCCChh----HHHHHHHHHhccC------ChhhHHHHHHHHHHhcCCchHH
Q 007396 206 AHAS-NGLWS----ECLKLFGEM-NNEKCWRPEES----ILVSVLSACTHLG------ALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 206 ~~~~-~g~~~----~A~~~~~~m-~~~g~~~p~~~----t~~~ll~a~~~~~------~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
---+ +|+.. ...+.|+-. .+.| +.+-.. .|...+...-..| +++..++++..++...+..=..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 3322 23332 233444433 3344 444332 2334444433344 4556677777777655443344
Q ss_pred HHhHHHhHH-------------HhcCCHHHHHHHHhccC------CCCee---------------eHHHHHHH-------
Q 007396 270 VETSLIDMY-------------VKCGCLEKGLCLFRMMA------DKCQL---------------TYSVMISG------- 308 (605)
Q Consensus 270 ~~~~li~~y-------------~~~g~~~~A~~~f~~m~------~~~~~---------------~~~~li~~------- 308 (605)
.|+-....- -+...+..|.+++++.. .++.. .|-.+|.-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 453221110 11223455666665442 11111 13222210
Q ss_pred ------------------------------------------HHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 007396 309 ------------------------------------------LAMHGQ-------GKEALSIFSEMLREGLEPDDVVYVG 339 (605)
Q Consensus 309 ------------------------------------------~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ 339 (605)
+...|+ -+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 2233333333322111112222222
Q ss_pred HHHHHh---ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCC-CHHHHHHHHHHH
Q 007396 340 VLSACS---HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 340 ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~a~ 412 (605)
+..--- .....+....+++++.......|+ .+|.+++..-.|..-+..|..+|.+. +..+ ++.+.++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 211100 001234444555555544344444 35677788888888899999999888 3334 566777887766
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
+ .+|.+.|.++|+--++.-++++..-...++-+...++-..+..+|++...+++.+
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 5 4678889999999888888777766677788888888889999999988875543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0035 Score=53.99 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=86.1
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-c---hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch--hHHHH
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN-F---TFPALFKACAKLQALKEGMQIHGHVFKVGFECDL--FVQNS 171 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ 171 (605)
.|..++..+ ..++...+...++.+.... |+. + ..-.+...+...|++++|...|+.+......++. ...-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 345555555 4778888888888888763 333 2 2233445667789999999999998887643332 34445
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQK--SVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
|...+...|++++|+..++....+ ....+......|.+.|++++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888889999999998776543 2345666777888899999998888753
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0042 Score=68.04 Aligned_cols=211 Identities=10% Similarity=0.044 Sum_probs=133.7
Q ss_pred hhhccccccccCcc-CCCChHHHHHHHhhcCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCC---------
Q 007396 63 PFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEP--------- 129 (605)
Q Consensus 63 ~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------- 129 (605)
...+-.|+ ..| ..+++++|.++.+...+ |+... |-.+...+.+.++..++..+ .+... ...
T Consensus 31 ~~a~~~Li---~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~ 104 (906)
T PRK14720 31 FKELDDLI---DAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH 104 (906)
T ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH
Confidence 34455666 777 88888888887775443 44333 23333345555555555444 22221 112
Q ss_pred ----------CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhH
Q 007396 130 ----------DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVAS 199 (605)
Q Consensus 130 ----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~ 199 (605)
+...+..+..+|-+.|+.+++.++++++++.. ..|+.+.|.+...|+.. ++++|++++.+.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------- 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA------- 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------
Confidence 22566677777778888888888888888887 34788888888888888 888888887664
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh-cCCchHHHHhHHHhHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN-ISALNVIVETSLIDMY 278 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y 278 (605)
+..|...+++.++.+++.++.... |+.+.+ -.++.+.+... |..--+.++--+-+.|
T Consensus 176 ----V~~~i~~kq~~~~~e~W~k~~~~~---~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 176 ----IYRFIKKKQYVGIEEIWSKLVHYN---SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred ----HHHHHhhhcchHHHHHHHHHHhcC---cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 333777778888888888887743 433222 12222223221 3333455666677778
Q ss_pred HhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHH
Q 007396 279 VKCGCLEKGLCLFRMMADK---CQLTYSVMISGLA 310 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 310 (605)
-+..+++++..+|+.+.+. |.....-++..|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888888888888877643 4445555666655
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=54.45 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLLSNMY 446 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 446 (605)
.+...+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444445555555555555544 11222 1233444555555556666666666655555443 23455555556
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 007396 447 ARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~ 465 (605)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 6666666666666555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0018 Score=53.35 Aligned_cols=104 Identities=9% Similarity=0.013 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLL 409 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 409 (605)
++..+...+...|++++|...|..+.....-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777777764321111 1344555677777777777777777765 22233 34566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.++...|+.+.|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.11 Score=52.55 Aligned_cols=394 Identities=11% Similarity=0.094 Sum_probs=234.0
Q ss_pred CCchhhccccccccCccCCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH
Q 007396 60 FWNPFCASNLVATCALSHWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPA 136 (605)
Q Consensus 60 ~~~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 136 (605)
+-|...|+.|| .-+....+++++..++++.. | ....|..-|..-....+++....+|.+.+..-+ +...|..
T Consensus 17 P~di~sw~~li---re~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLI---REAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHH---HHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 45788999999 88833399999999999876 4 456799999999999999999999999887643 4555666
Q ss_pred HHHHHHcc-CChHHH----HHHHHHHH-HhCCCCc-hhHHHHHHHHH---------HcCCCHHHHHHHHHhcCC-C----
Q 007396 137 LFKACAKL-QALKEG----MQIHGHVF-KVGFECD-LFVQNSLINMY---------GKCEKVEFASAIFKQMDQ-K---- 195 (605)
Q Consensus 137 ll~~~~~~-~~~~~a----~~~~~~~~-~~g~~~~-~~~~~~li~~y---------~~~g~~~~A~~~~~~m~~-~---- 195 (605)
-|.-..+. ++.... .+.|+... +.|+++- -..|+.-++.. ....+++..++++.++.. |
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 55543332 333332 33344333 3454332 34466655543 334467778888877753 1
Q ss_pred -----ChhHHHHHHHHH-------HHCCChhHHHHHHHHHHh--CCCCCCChhH---------------HHHHHH-----
Q 007396 196 -----SVASWSAIIAAH-------ASNGLWSECLKLFGEMNN--EKCWRPEESI---------------LVSVLS----- 241 (605)
Q Consensus 196 -----~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~p~~~t---------------~~~ll~----- 241 (605)
|-..|..=|... -+...+..|.+++++... .| +.-+..+ +...|.
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~G-L~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRG-LNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-hcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111111111110 112233344444444321 01 1000000 111111
Q ss_pred --------------------------------------------HHhccCCh-------hhHHHHHHHHHHhcCCchHHH
Q 007396 242 --------------------------------------------ACTHLGAL-------DLGKCTHGSLIRNISALNVIV 270 (605)
Q Consensus 242 --------------------------------------------a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~ 270 (605)
.+...|+. +++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111221 223333333333222223333
Q ss_pred HhHHHhHHHhcC---CHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 007396 271 ETSLIDMYVKCG---CLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLS 342 (605)
Q Consensus 271 ~~~li~~y~~~g---~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 342 (605)
|.++.+.--..- ..+.....+++.. ..-..+|...++.-.+..-.+.|..+|.+..+.+..+ +.....+++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 333322111111 1233333333333 1224678888888888888999999999999998888 5567777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCH--HHHHHHHHHHHhcCC
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQND--VVWRSLLSASKVHHN 417 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~--~~~~~ll~a~~~~g~ 417 (605)
-+| .++.+-|.++|+.=.+++|- ++.--...++-+...|+-..|..+|++. .+.|+. .+|..+|.-=..-|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 655 58889999999987765553 3455567888889999999999999988 234443 499999999999999
Q ss_pred hHHHHHHHHHHHhhCCCC----CchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 418 LEIGEIAAKNLFQINSHH----PSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
.....++-++....-|.+ ...-..+++.|.-.+.+..-..-++.|
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999988877665521 123456677777776655444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00033 Score=51.44 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC-ChhHHHHHHHHHHhC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ-RWYDVAKIRTEMASK 465 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 465 (605)
+..+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45688888999999999999999999999999999999999999999999 799999999887753
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=65.03 Aligned_cols=95 Identities=6% Similarity=-0.086 Sum_probs=48.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|...|+++.. --+.+...|..+..+|.+.|++++|...+++. .+.|+ ...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445556666666555552 11123444555555555555555555555554 33332 2345555555555555555
Q ss_pred HHHHHHHHHhhCCCCCchH
Q 007396 421 GEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~ 439 (605)
|+..++++++++|.++...
T Consensus 89 A~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 5555555555555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.12 Score=50.65 Aligned_cols=84 Identities=20% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..+++++-.++-.. .-++.-|..+++.+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 3333444444555444444433331 24444444555555555555544443211 112234445555555
Q ss_pred hcCCHHHHHHHHHHC
Q 007396 382 RAGMLGEALELIQSM 396 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m 396 (605)
+.|+..+|..++.++
T Consensus 249 ~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI 263 (319)
T ss_pred HCCCHHHHHHHHHhC
Confidence 555555555555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.019 Score=52.32 Aligned_cols=183 Identities=10% Similarity=0.067 Sum_probs=130.0
Q ss_pred cCCHHHHHHHHhccCCC--------Ce-eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCCH
Q 007396 281 CGCLEKGLCLFRMMADK--------CQ-LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL-SACSHAGLV 350 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~--------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 350 (605)
..+.++..+++..+... +. ..|..++-+....|+.+.|...++++... + |.+.-...+= .-+-..|..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 45778888888776521 11 23444555667788899999999998875 3 5543222111 123446889
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
++|.++++.+..+. +.|..+|-.=+.+.-..|+.-+|.+-+.+. .+-.|...|.-|-..|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988542 445666766666666777777777766555 34568889999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHHcC---ChhHHHHHHHHHHhCCC
Q 007396 429 FQINSHHPSDYVLLSNMYARAQ---RWYDVAKIRTEMASKGL 467 (605)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~ 467 (605)
.-..|.++..+..++..+...| +.+-|.+++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999988888888876655 45667788887776543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.11 Score=50.91 Aligned_cols=108 Identities=9% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKV 414 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 414 (605)
.+.+.-+.-|...|....|.++-. ++.+ |+...|...+.+|+..+++++-.++... +..+..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355556666777888888777654 4444 8899999999999999999998887654 3345789999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
.|+..+|.....++ .+..-+.+|.++|+|.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 99999998887772 2256788999999999998754
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=49.56 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677788888888888888888877778888888888888888888888777654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0031 Score=56.12 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
.+..+...+.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++.+..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555566666666666554 21221 246666677777777888888888887777777777777777777
Q ss_pred HHcCC--------------hhHHHHHHHHHHh
Q 007396 447 ARAQR--------------WYDVAKIRTEMAS 464 (605)
Q Consensus 447 ~~~g~--------------~~~a~~~~~~m~~ 464 (605)
...|+ +++|.+++++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 77665 4555566555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0066 Score=58.92 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----------
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS--ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHY----------- 373 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----------- 373 (605)
.++...|+.++|...--..++.. +. ..+..+++ ++...++.+.+...|++.. .+.|+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 35677888888888776665532 21 12222333 3445678888888888776 344543221
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 374 --GCVVDLMGRAGMLGEALELIQSM-PIQQ-----NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 374 --~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
.-=.....+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.--++.++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11223456789999999999887 5444 445666666778899999999999999999999888888888999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCC
Q 007396 446 YARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
+...++|++|.+-++...+..-.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999988765443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0069 Score=53.89 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=76.6
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD--DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCV 376 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 376 (605)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+... ..| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 4556666667777777777777777765433322 24566666667777777777777776663 223 34445555
Q ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 377 VDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
...|...|+...+..-++.. ...+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55565555554443322211 012577888888888888765 5556666655554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=49.69 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFERGV-EPDNFTFPALFKACAKLQ--------ALKEGMQIHGHVFKVGFECDLFVQN 170 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (605)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.++++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456677777999999999999999999 899999999999987653 2345778999999999999999999
Q ss_pred HHHHHHHc
Q 007396 171 SLINMYGK 178 (605)
Q Consensus 171 ~li~~y~~ 178 (605)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.041 Score=56.47 Aligned_cols=233 Identities=14% Similarity=0.076 Sum_probs=126.7
Q ss_pred hHHHHHHHHHccCChHHH--HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHC
Q 007396 133 TFPALFKACAKLQALKEG--MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASN 210 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a--~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 210 (605)
.++..=++|.+.++..-- ..-++++.+.|-.|+..... ..++-.|.+.+|.++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH------------------c
Confidence 355555666666654432 23345667778777766433 455668889999998865 4
Q ss_pred CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
|....|+++|..|+--. ...-+...|..++-+.+...-.+. ..++.--.+-..++...|+.++|..+
T Consensus 659 G~enRAlEmyTDlRMFD-----------~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMFD-----------YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred CchhhHHHHHHHHHHHH-----------HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55555666665553211 111122233333333322221111 00111112344566667777777654
Q ss_pred HhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 007396 291 FRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV 370 (605)
Q Consensus 291 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 370 (605)
...+|-.+-+.++-+++-. .+..+...+..-+-+...+..|-++|..|-.
T Consensus 726 ------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 726 ------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred ------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 3344545555555554432 2333444444444455566667777776642
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCCCHH-HHHHH----------HHHHHhcCChHHHHHHHHHHHhh
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSMP-IQQNDV-VWRSL----------LSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-~~~~l----------l~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
...++++....+++++|..+-++.| +.||+. -|... -.||.+.|+-.+|.++++++...
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2356777777888888888877774 445543 22222 24567778888888888877543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0033 Score=55.68 Aligned_cols=93 Identities=8% Similarity=-0.095 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
...|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|+.++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777788888888888776 33332 2478888888999999999999999999999888888888888
Q ss_pred HHH-------HcCChhHHHHHHHHH
Q 007396 445 MYA-------RAQRWYDVAKIRTEM 462 (605)
Q Consensus 445 ~~~-------~~g~~~~a~~~~~~m 462 (605)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888666666544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0098 Score=57.44 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=95.1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA-CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
+|-.++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 577777777777778888888888875422 222333333332 33357777799999999864 44567788889999
Q ss_pred HHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 380 MGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
+.+.|+.+.|..+|++. ..-|.. ..|...+.-=.+.|+.+....+.+++.+.-|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987 222333 499999999999999999999999999987763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0053 Score=61.59 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHh
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGR 382 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 382 (605)
....+...|++++|++.|++.++. .| +...|..+..++...|++++|...++.+.. +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 44 456777888899999999999999999983 344 56788889999999
Q ss_pred cCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007396 383 AGMLGEALELIQSM-PIQQNDVVWRSLLSAS 412 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~ 412 (605)
.|++++|...|++. .+.|+......++.-|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5667665555454433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=47.19 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+...+.+.|++++|.+.|++. ...|+. ..|..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445677889999999999887 555654 4888888899999999999999999999998764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=61.73 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..|..+.-.....|++++|...++++.+++| +...|..++..|...|+.++|...+++....+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444444444445666666666666666665 34556666666666666666666666555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.28 Score=51.12 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=57.6
Q ss_pred hhhhhhccCCCCCCCCCccccccCh-hHHHHHHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHH
Q 007396 7 LHQSLLLTQPEEPPKGPELNLRLKE-QECLTILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYA 84 (605)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A 84 (605)
.+..+++ .|+.|-..-++++.... +..-.++.+ -.+++|.+.... .|.+.+|..|. ..- ..-.++.|
T Consensus 643 lld~Il~-~pE~pnk~~ii~~~ikslrD~~~Lve~-vgledA~qfiEd------nPHprLWrllA---e~Al~Kl~l~tA 711 (1189)
T KOG2041|consen 643 LLDKILL-TPENPNKTCIIEVMIKSLRDVMNLVEA-VGLEDAIQFIED------NPHPRLWRLLA---EYALFKLALDTA 711 (1189)
T ss_pred EHhhHhc-CcCCCCcceEEEEEehhhhhHHHHHHH-hchHHHHHHHhc------CCchHHHHHHH---HHHHHHHhhhhH
Confidence 3334433 44555555555554333 222223332 224444433321 46666666555 333 44455666
Q ss_pred HHHHhhcCC-CCc---------c---cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHH
Q 007396 85 CSIFRQIDE-PGA---------F---DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGM 151 (605)
Q Consensus 85 ~~~f~~~~~-~~~---------~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 151 (605)
+..|-+... +.+ . .-.+=|.+| -|++++|.++|-+|-++.+ .+....+.||+-...
T Consensus 712 E~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~ 780 (1189)
T KOG2041|consen 712 EHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVY 780 (1189)
T ss_pred hhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHH
Confidence 666655433 111 0 112223333 3778888888877654421 233444555555444
Q ss_pred H
Q 007396 152 Q 152 (605)
Q Consensus 152 ~ 152 (605)
+
T Consensus 781 q 781 (1189)
T KOG2041|consen 781 Q 781 (1189)
T ss_pred H
Confidence 4
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.005 Score=47.71 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+...+...|++++|...+++..+.. ..+...+..+...+...+++++|.+.|+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554421 1112333344444444455555555554443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.25 Score=48.10 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHhcC---CCChhHHHHHHH--HHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHH
Q 007396 179 CEKVEFASAIFKQMD---QKSVASWSAIIA--AHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGK 253 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~ 253 (605)
.|+-..|+++-.+.. ..|....-.++. +-.-.|++++|.+-|+.|.... ..-..-+..+.-..-+.|+.+.|.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHH
Confidence 455566655554432 223333333332 2334577777777777776421 111222333444445667777777
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC-----CCCee--eHHHHHHHHH---hcCCHHHHHHHHH
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA-----DKCQL--TYSVMISGLA---MHGQGKEALSIFS 323 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~ 323 (605)
++-+..-..-. .-...+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+ -.-+...|...-.
T Consensus 175 ~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 77666655442 234566778888888888888888887544 33332 1222332221 1234556666555
Q ss_pred HHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CC
Q 007396 324 EMLREGLEPDDVV-YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PI 398 (605)
Q Consensus 324 ~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 398 (605)
+..+ +.||-+. -.....++.+.|++.++-.+++.+- ...|.+..+.. ..+.+.|+. +..-+++. ..
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhc
Confidence 5554 6677643 3334567889999999999999887 33566655433 334566653 22222222 34
Q ss_pred CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhCC
Q 007396 399 QQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA-QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 399 ~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 466 (605)
+||.. +...+..+-...|++..|..-.+.+....|. .+.|..|.++-... |+-.++...+.+..+.-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 66544 6667777888899999999999999999886 67888888887554 99999998888777643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.023 Score=55.12 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHH
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA-GLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLM 380 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 380 (605)
+..|...|++..|-..+.++ ...|... |++++|.++|++...-+..... ..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 45556666666655554443 3345555 7777777777776532221111 24556677788
Q ss_pred HhcCCHHHHHHHHHHCC---CC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 381 GRAGMLGEALELIQSMP---IQ-----QNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+.|++++|.++|++.. .. .+.. .+-..+-++...||...|...+++....+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888761 11 1111 2222233456678888899999888888775
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0035 Score=58.75 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH---hcCChHHHHHHHHHHHhhCCCCCchHHH
Q 007396 367 VPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK---VHHNLEIGEIAAKNLFQINSHHPSDYVL 441 (605)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (605)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++. ......++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346889999999999999999999999887 4444 3446666666543 3345678999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
|...+...|++.+|...++.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0079 Score=47.47 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGL-EPDDVVYVGVLSACSHAG--------LVNEGLLCFDRMKLEYRIVPTVQHY 373 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 373 (605)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+|+.|. ..+++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3456666777999999999999999999 899999999999877543 2445677888887 46888888888
Q ss_pred HHHHHHHHh
Q 007396 374 GCVVDLMGR 382 (605)
Q Consensus 374 ~~li~~~~~ 382 (605)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.07 Score=50.21 Aligned_cols=173 Identities=9% Similarity=0.040 Sum_probs=101.6
Q ss_pred HHhHHHhcCCHHHHHHHHhccCCCCee---e---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMADKCQL---T---YSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH- 346 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~~~~~---~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 346 (605)
....+.+.|++++|.+.|+.+....+. . .-.++.+|.+.+++++|...+++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344456678888888888877643221 1 223556778888888888888888774322222344444444331
Q ss_pred -c---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH
Q 007396 347 -A---------------GL---VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRS 407 (605)
Q Consensus 347 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 407 (605)
. .+ ..+|...|+.++ +-|=...-..+|...+..+..+--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 0 01 122333444443 333333334444444433310000001 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...-|.+.|.+..|..-++.+++.-|..+ .....+..+|.+.|..++|.++.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 33457888999999999999999887743 456788899999999999998877654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00079 Score=49.22 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=44.6
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|+..++++.+.+|+++..+..++.+|.+.|++++|.++++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888899999999999999888888889999999999999998888776543
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=60.00 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQS 395 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (605)
+...+-++++.+| .-..+.+++++|...|.+.+ .+.| |..-|.--..+|.+.|.++.|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555554 34567899999999999998 4555 566667778899999999999887777
Q ss_pred C-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 396 M-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 396 m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
. .+.|... +|..|..+|...|++++|++.|++.++++|++......|-.
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 6 6777655 99999999999999999999999999999998754444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=47.82 Aligned_cols=57 Identities=5% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+...++++.|..+++++.+.+|.++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788899999999999999999999999999999999999999999999888654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0066 Score=56.66 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=79.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAG 384 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 384 (605)
.-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|-.+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 447788999999999999998 555 45667777889999999999988777766 34454 578999999999999
Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007396 385 MLGEALELIQSM-PIQQNDVVWRSLLS 410 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p~~~~~~~ll~ 410 (605)
++++|.+.|++. .+.|+..+|..=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999887 78888777654443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0035 Score=55.87 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=75.4
Q ss_pred HHHHHhhc--CCCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcc------------
Q 007396 84 ACSIFRQI--DEPGAFDFNTLIRGFVKE-----VEFEEALFLYNEMFERGVEPDNFTFPALFKACAKL------------ 144 (605)
Q Consensus 84 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~------------ 144 (605)
-...|++. ..+|..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 457777888888877654 55666677788888888888888999888877541
Q ss_pred ----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 145 ----QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 145 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356688999999999999999999999999877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.16 Score=44.12 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC---HHH
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI-VPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN---DVV 404 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~ 404 (605)
+.|....-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++++ ...|+ ..+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666788888999999999999998873 54 456777778888888899999999998887 22221 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...+...+...|..+.|+..|+.+...-|. +..-.....+++++|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 445667888899999999999999988774 5555566778889998887766554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0023 Score=49.08 Aligned_cols=80 Identities=13% Similarity=0.233 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 007396 312 HGQGKEALSIFSEMLREGLE-PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 389 (605)
+|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...| +....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46667777777777664321 2333444456666667777777766665 2 1112 223333345566666666666
Q ss_pred HHHHHH
Q 007396 390 LELIQS 395 (605)
Q Consensus 390 ~~~~~~ 395 (605)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=59.40 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=49.6
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHH
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKV--GFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ----KSVASWSAI 203 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~l 203 (605)
+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..++|.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444444444444444332 1111122333444444444444444444443322 344444444
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH 245 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~ 245 (605)
+..+.+.|++..|.++...|...+ ...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHH
Confidence 444444444444444444444444 34444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.025 Score=48.87 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=94.6
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM---PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
++..++....|+...--.|..++.+.|+..||...|++. .+.-|......+..+....++...|...++.+.+.+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 344445566788888889999999999999999999987 45567888889999999999999999999999998876
Q ss_pred --CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 435 --HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 435 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+.....+...|...|+.++|...|+.....-
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 67788899999999999999999999988754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0059 Score=61.43 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 007396 100 NTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC 179 (605)
Q Consensus 100 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (605)
.++|+.|.+.|..+++++++..=...|+-||.+|++.+|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 45555555555555555555555555555555555555555555555555555555555554444444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.038 Score=47.07 Aligned_cols=92 Identities=7% Similarity=-0.019 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
.-.+...+...|++++|..+|+....-. +-+..-|-.+..+|-..|++++|...|.......+ .|+..+-.+..+|.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3334444455555555555555555422 12223333344444444555555555555554442 34444444555555
Q ss_pred hcCCHHHHHHHHhcc
Q 007396 280 KCGCLEKGLCLFRMM 294 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m 294 (605)
+.|+.+.|++.|+..
T Consensus 115 ~lG~~~~A~~aF~~A 129 (157)
T PRK15363 115 ACDNVCYAIKALKAV 129 (157)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555533
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0076 Score=51.52 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=74.7
Q ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHH
Q 007396 379 LMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (605)
-+-..|++++|..+|+-+ -..| +..-|..|..+|...++++.|...+.....++++||.++...+..|...|+.+.|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345689999999999887 2222 44568888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007396 457 KIRTEMAS 464 (605)
Q Consensus 457 ~~~~~m~~ 464 (605)
+.|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99998876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=56.83 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEALELIQSM--PIQQNDVVWRSLLSA 411 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a 411 (605)
.+|..++..+-+.+..+.|+.+|.+..+... .+..+|.....+-.+ .++.+.|..+|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677888888888899999999999984322 234555555555334 56677799999987 344567789999999
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...++.+.+..+|++....-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765533 47888888889999999999999998864
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.065 Score=55.61 Aligned_cols=28 Identities=11% Similarity=-0.149 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHh
Q 007396 164 CDLFVQNSLINMYGKCEKVEFASAIFKQ 191 (605)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (605)
|.+..|..|...-.+.-.++-|+..|-+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 4555555555444444444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0044 Score=45.33 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCC
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHH-NLEIGEIAAKNLFQINS 433 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~ 433 (605)
+...|..+...+.+.|++++|+..|++. ...|+. ..|..+..++...| ++++|+..+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777778888888888888888776 445644 48888888888888 79999999999998877
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.056 Score=56.81 Aligned_cols=141 Identities=12% Similarity=0.033 Sum_probs=101.9
Q ss_pred CCCeeeHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 007396 296 DKCQLTYSVMISGLAMH--G---QGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHA--------GLVNEGLLCFDRMK 361 (605)
Q Consensus 296 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 361 (605)
..|...|...+.+.... + ..++|..+|++..+ ..|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45678899988885443 2 37799999999998 57775 3454443333221 12334444444333
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 362 LEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 362 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.......+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...++++.+++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 11123345577888877777789999999999998 677888899999999999999999999999999999998753
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=52.86 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=66.0
Q ss_pred CCCeeeHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CCHHHHH
Q 007396 296 DKCQLTYSVMISGLAM-----HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA----------------GLVNEGL 354 (605)
Q Consensus 296 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 354 (605)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4444555555555543 466777777888888888888888999888876542 2346678
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
+++++|. ++|+-||.+++..+++.+++.+.
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 8889998 68999999999999988887664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.11 Score=50.29 Aligned_cols=133 Identities=13% Similarity=0.178 Sum_probs=62.0
Q ss_pred ChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCC----CC-cchHHHHHHHHHccCChHHHHHHH
Q 007396 80 SMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVE----PD-NFTFPALFKACAKLQALKEGMQIH 154 (605)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~-~~t~~~ll~~~~~~~~~~~a~~~~ 154 (605)
++++|..+|++ ....|-..|++++|.+.|.+......+ .+ ...|......+ +..++++|...+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 56666665544 355666777777777777765432111 01 11233333333 233666666666
Q ss_pred HHHHHh----CCCCc--hhHHHHHHHHHHcC-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHCCChhHHHH
Q 007396 155 GHVFKV----GFECD--LFVQNSLINMYGKC-EKVEFASAIFKQMDQ-----KS----VASWSAIIAAHASNGLWSECLK 218 (605)
Q Consensus 155 ~~~~~~----g~~~~--~~~~~~li~~y~~~-g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 218 (605)
.+.... | .++ ...+..+...|-+. |++++|.+.|++..+ .+ ...+..+...+.+.|++++|++
T Consensus 98 ~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 555432 2 111 22344444455555 555555555544321 11 1134444455555666666666
Q ss_pred HHHHHHh
Q 007396 219 LFGEMNN 225 (605)
Q Consensus 219 ~~~~m~~ 225 (605)
+|++...
T Consensus 177 ~~e~~~~ 183 (282)
T PF14938_consen 177 IYEEVAK 183 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0029 Score=46.17 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV 403 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 403 (605)
.|++++|.++|+.+... .+-+...+..+...|.+.|++++|.++++++ ...|+..
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 45555555555555532 1124444445555555555555555555555 3334433
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.2 Score=47.26 Aligned_cols=306 Identities=11% Similarity=0.016 Sum_probs=154.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC---CHHHHHHHHHhcCC--CChhHHHHHHHHHHHC
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE---KVEFASAIFKQMDQ--KSVASWSAIIAAHASN 210 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 210 (605)
.+|+-+...+.+..|.++-..+-..-.. ...++.....-+.+.. +-+.+.++-+++.. ...++|..+..-.-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 3444455556666666665554211111 1455666666666553 23334444444444 3456677777777777
Q ss_pred CChhHHHHHHHHHHhCCCCC---CChhHHHHHHHHHhccCChhhHHHHHHHHHHhc-----------CCchHHHHhHHHh
Q 007396 211 GLWSECLKLFGEMNNEKCWR---PEESILVSVLSACTHLGALDLGKCTHGSLIRNI-----------SALNVIVETSLID 276 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~ 276 (605)
|+.+-|..+++.=...+.-. .+..-+...+.-+...|+.+...++.-.+...- .+.....|.-++.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 77777777765422221000 012234455566666666666665554444321 1111112211111
Q ss_pred ---------HHHhcCCHHHHHHHHh--ccCC-----CCeeeHHHHHHHHHhcCC---HHHH-------HHHHHHHHH-cC
Q 007396 277 ---------MYVKCGCLEKGLCLFR--MMAD-----KCQLTYSVMISGLAMHGQ---GKEA-------LSIFSEMLR-EG 329 (605)
Q Consensus 277 ---------~y~~~g~~~~A~~~f~--~m~~-----~~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~-~g 329 (605)
.| ..++...+...|. .... .-.........++++... ..+| +.+.+.+.. .|
T Consensus 601 ~~~~~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 601 HQDRATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred hhchhhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1111111111111 1000 001112222233333322 1111 122222221 12
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Q 007396 330 LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLL 409 (605)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 409 (605)
..-...|.+--+.-+...|...+|.++-.+.+ .|+-..|-.-+.+++..+++++-+++-+.+. .+..|.-++
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFV 751 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFV 751 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHH
Confidence 23333445555555666777777777665554 4777777777888888888888777777663 245666777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
.+|.+.|+.++|...+-+.-.+ .-...+|.+.|++.+|.++-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 8888888888887776554221 15677788888888777643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.019 Score=54.45 Aligned_cols=95 Identities=6% Similarity=-0.002 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLL 442 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 442 (605)
..|...+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|+.+.+..|++ +..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667777777777666 223432 255556667777888888888888888777664 3445556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC
Q 007396 443 SNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+.+|...|++++|.++++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888877664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.034 Score=45.57 Aligned_cols=83 Identities=12% Similarity=-0.005 Sum_probs=48.9
Q ss_pred HHHhcCCHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHcC
Q 007396 379 LMGRAGMLGEALELIQSM---PIQQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---HPSDYVLLSNMYARAQ 450 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 450 (605)
++-..|+.++|..+|++. +.... ...+-.+.++++..|++++|..++++.....|+ +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 444556666666666554 22111 124445566667777777777777777666565 4444555566667777
Q ss_pred ChhHHHHHHHH
Q 007396 451 RWYDVAKIRTE 461 (605)
Q Consensus 451 ~~~~a~~~~~~ 461 (605)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 77777766544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.64 Score=45.75 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcC
Q 007396 309 LAMHGQGKEALSIFSEMLRE---GLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAG 384 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 384 (605)
..++|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..--+... .+.|. +..|..-...+.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 45566666676666666542 223334445555555566666666666555444 12111 111222222333345
Q ss_pred CHHHHHHHHHHC
Q 007396 385 MLGEALELIQSM 396 (605)
Q Consensus 385 ~~~~A~~~~~~m 396 (605)
.+++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666655554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0018 Score=39.54 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=30.1
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHcCChhHHH
Q 007396 425 AKNLFQINSHHPSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 456 (605)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.041 Score=48.68 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD--NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLI 173 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (605)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++..++... .....++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 34456666667777778888887777765432221 23566666667777777777777777766532 2334455555
Q ss_pred HHHH
Q 007396 174 NMYG 177 (605)
Q Consensus 174 ~~y~ 177 (605)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.12 Score=47.31 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=115.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC--CCh--------hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQ--KSV--------ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+..+.. -+.++.....
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHH
Confidence 55666666554444444444443322 222 234566777777888999999999998876 5667788888
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHH-----HHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVI-----VETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLA 310 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 310 (605)
+.+...+.|+.+.|...++.+.+..-..|.. +.......|.-.+++..|...|+++... |++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888999999999999999887654333333 3334445566778899999999887754 4555666555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007396 311 MHGQGKEALSIFSEMLREGLEPDDVVYV 338 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 338 (605)
-.|+..+|++..+.|+.. .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 678999999999999874 55554444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.071 Score=43.68 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=56.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHcC
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPD--NFTFPALFKACAKLQALKEGMQIHGHVFKVGFEC--DLFVQNSLINMYGKC 179 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~ 179 (605)
.++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++......+.+ +......+...+...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 445556777777777777777665433 2244455566666777777777777766553221 112222223345566
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAH 207 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~ 207 (605)
|+.++|.+.+-....++...|.--|..|
T Consensus 89 gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 89 GRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666544333333333333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.17 Score=52.26 Aligned_cols=225 Identities=19% Similarity=0.206 Sum_probs=120.6
Q ss_pred Ccc-CCCChHHHHHHHhhc-----------CCCCcccHHHHHHHHHhCCCc--hHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007396 74 ALS-HWGSMDYACSIFRQI-----------DEPGAFDFNTLIRGFVKEVEF--EEALFLYNEMFERGVEPDNFTFPALFK 139 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~-----------~~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~ 139 (605)
--| ..|.+++|.++---- ..-+...++..=.+|.+-.+. -+-+.-+++|++.|-.|+... +..
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~ 640 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LAD 640 (1081)
T ss_pred hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHH
Confidence 445 788888776532110 011233344555566655543 344555677888887788754 334
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------ChhHH-------HHHHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-------SVASW-------SAIIA 205 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~-------~~li~ 205 (605)
.|+-.|.+.+|-++|. +.|.+ |..+.+|.....+|.|.++...-... .-..| .+-..
T Consensus 641 ~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAE 711 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAE 711 (1081)
T ss_pred HHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHH
Confidence 5667788888888775 44544 44566677666777777665432210 00111 12233
Q ss_pred HHHHCCChhHHHHHHHH------HHhCCC--CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 206 AHASNGLWSECLKLFGE------MNNEKC--WRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 206 ~~~~~g~~~~A~~~~~~------m~~~g~--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
.+...|+.++|..+.-+ +.+-+. -..+..+...+..-+.+...+..|-++|..|-+. .+++++
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVql 782 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQL 782 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhh
Confidence 34455666666554321 111110 1223344444444455566666777777666433 256777
Q ss_pred HHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
....+++.+|..+-++.++--...|-.-.+-++...++++|.
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred eeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 778888888888888777542222322333334444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=42.59 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
..|.+.+++++|.++++++ ...|+ ...|......+...|++++|...+++..+.+|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888999999998887 55554 44777778888999999999999999999999766543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.029 Score=54.51 Aligned_cols=130 Identities=8% Similarity=-0.057 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCC-CCH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRM---KLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-------PIQ-QND 402 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~ 402 (605)
..|..|.+.|.-.|++++|....+.- .+++|-.. ....+..+...+.-.|+++.|.+.|+.. +-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666666778999988766542 22444322 2356677778888889999999888764 211 223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQI----N--SHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
-+..+|..+|....+++.|+..+.+-+.+ + .-...++.+|.++|...|..+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 36778888888888899999888875543 2 12456788999999999999999887766543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.026 Score=56.49 Aligned_cols=62 Identities=6% Similarity=-0.013 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV----VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
...++.+..+|.+.|++++|...|++. .+.|+.. .|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666663 4555532 4666666666666666666666666665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=41.99 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=12.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHh
Q 007396 203 IIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
....+.+.|++++|.+.|+++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~ 60 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN 60 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344455555666665555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.6 Score=42.75 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=144.1
Q ss_pred cHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH--ccCChHHHHHHHHHHHHhCCCCchhH--HHH
Q 007396 98 DFNTLIRGFVK--EVEFEEALFLYNEMFERGVEPDNFTFPALFKACA--KLQALKEGMQIHGHVFKVGFECDLFV--QNS 171 (605)
Q Consensus 98 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 171 (605)
.|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555443 35666666665554432 4456666666665543 348888888888877532 11111 111
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhH--HHHHHHHHhc-
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESI--LVSVLSACTH- 245 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t--~~~ll~a~~~- 245 (605)
|.----+.|+.+.|+..-+..-.. -.-.|.+.+...+..|+|+.|+++++.-+....+.++..- -..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222223567777777666554432 2236777788888888888888888776554324454422 1222222211
Q ss_pred --cCChhhHHHHHHHHHHhcCCchHHH-HhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHH
Q 007396 246 --LGALDLGKCTHGSLIRNISALNVIV-ETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 246 --~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 322 (605)
..+...|+..-.+..+. .||..- --.-..++.+.|++.++-.+++.+-+..+..--..+..+++.|+ -++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHH
Confidence 12333444444444333 222211 11223456666666666666666654332222222222333333 333333
Q ss_pred HHHHH-cCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHC
Q 007396 323 SEMLR-EGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEALELIQSM 396 (605)
Q Consensus 323 ~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 396 (605)
++..+ ..++||. .....+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++...+.+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33322 1244543 344455555566666666655444443 345666666555555432 36666666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.56 Score=46.53 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCCC---Cee-eHH---HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMADK---CQL-TYS---VMISGLAM---HGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~-~~~---~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.++-.|-...+++...++++.+... ++. +-+ ...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777643 111 111 12234444 6778888888887665556667777766655
Q ss_pred HH
Q 007396 343 AC 344 (605)
Q Consensus 343 a~ 344 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.016 Score=37.93 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788889999999999999999999999998887776653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.8 Score=44.59 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=62.0
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCC---cccHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPG---AFDFNTLIRGFVKEVE--FEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL 147 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 147 (605)
+-. ..+.+..|.++-..+..|. ...|.....-+.+..+ -+++++..++=...-. -+..+|..+.+-.-..|+.
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~ 523 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRF 523 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcH
Confidence 445 6788888888888877765 3334444455555432 2334444433332212 3344677777666677888
Q ss_pred HHHHHHHHHHHHhCCC----CchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 148 KEGMQIHGHVFKVGFE----CDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 148 ~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
+.|..+.+.=...+.. .+..-+...+.-..+.|+.+-...++-.+.
T Consensus 524 ~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 524 ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 8877765532222211 111223333444455555555555554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.58 Score=43.13 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHH-hccCC--hhhHHHHHHHHHHhcCCchHHHHhH
Q 007396 197 VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSAC-THLGA--LDLGKCTHGSLIRNISALNVIVETS 273 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (605)
...|+.-+..+++....++|..-+....+-+ .||-. |-..-..+ .+.|. +-..+.+|.++.+.- ..-+++
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD--~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD--QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC--Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHH
Confidence 3456666666777766666665555444322 22211 11100001 11221 112334444444321 122456
Q ss_pred HHhHHHhcCCHHHHHHHHhccCCC--Ce--------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMADK--CQ--------LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
|...|.-..-+++-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++.+.++...+-+......|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 666666555555555555433221 12 23355666666677777888888888876555566777777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCC
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIV----PTVQHYGCVVDLMGRAGMLGEALELIQSMPIQ-Q-NDVVWRSLLSASKVHHN 417 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ll~a~~~~g~ 417 (605)
-.+.||.+.|..+|+...+..+.- -+..+.......|.-++++.+|...+.+.+.. | |...-|.-.-+..-.|+
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 788888888888888776443321 11222222233344556667777777666322 2 22233333333344566
Q ss_pred hHHHHHHHHHHHhhCCC
Q 007396 418 LEIGEIAAKNLFQINSH 434 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~ 434 (605)
...|.+..+.+.+..|.
T Consensus 302 l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 67777777777776665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.17 Score=48.08 Aligned_cols=101 Identities=7% Similarity=0.001 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLL 409 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 409 (605)
.|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333445677777777777664432111 0234556667777777777777777766 11222 22455556
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
..+...|+.+.|...++++.+..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667788888888888888888888654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.057 Score=52.58 Aligned_cols=257 Identities=11% Similarity=0.055 Sum_probs=154.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHccCChHHHHHHHHHHHH--h--CCC-CchhHHHHHHH
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNF----TFPALFKACAKLQALKEGMQIHGHVFK--V--GFE-CDLFVQNSLIN 174 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~li~ 174 (605)
.-+++.|+.+..+.+|+..++.|.. |.. .|..+-++|.-.+++++|+++|..=+. . |-+ -.......|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999988743 433 456666777778899999988764221 1 100 01122223334
Q ss_pred HHHcCCCHHHHHHHHHh-------cCCC--ChhHHHHHHHHHHHCCC--------------------hhHHHHHHHHHH-
Q 007396 175 MYGKCEKVEFASAIFKQ-------MDQK--SVASWSAIIAAHASNGL--------------------WSECLKLFGEMN- 224 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~-------m~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~- 224 (605)
.+--.|.+++|.-.-.+ +..+ ...++..+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445666666433211 1111 11234445555554442 234444443321
Q ss_pred ---hCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH----hcC-CchHHHHhHHHhHHHhcCCHHHHHHHHhccC-
Q 007396 225 ---NEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR----NIS-ALNVIVETSLIDMYVKCGCLEKGLCLFRMMA- 295 (605)
Q Consensus 225 ---~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~- 295 (605)
+.|.--.-...|..+.+.|--.|+++.|...|+.-.. .|- ......+..|.++|.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1220011123455555556667889999888776543 231 1234567888899999999999998887542
Q ss_pred ------CCC--eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 296 ------DKC--QLTYSVMISGLAMHGQGKEALSIFSEMLRE-----GLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 296 ------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
.+. ..+.-++.+.|.-...+++|+.++.+-..- ...-....+.+|..++...|..++|+.+.+...
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 332 234556777888888899999888765431 122234678889999999999999988766554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.055 Score=46.55 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA-----SKGLNQ 469 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~ 469 (605)
....++..+...|+++.|....+++...+|-+...|..++.+|...|+..+|.++++++. +.|+.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 556677778899999999999999999999999999999999999999999999998875 346655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.9 Score=37.22 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=80.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 389 (605)
.-.|..++..++..+.... .+..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456666667777666542 22333333333333333334444444444322221 234555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 390 LELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 390 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
...+-.++ .+..-....+.+....|+-+.-.++...+.+.+..+|.....++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55555553 234455667788889999999999999988766667888999999999999999999999999999974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.014 Score=43.82 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQI----NSH---HPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+++.+...+...|++++|+..+++.+++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777888888888888888887754 222 234677888899999999999998887653
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.12 Score=42.91 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 007396 366 IVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDVVWRSLLS 410 (605)
Q Consensus 366 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~ 410 (605)
+.|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344555555555555555555555554443 33333445555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.14 Score=42.47 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=68.0
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA 347 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (605)
..++.++|-++++.|+++....+.+..-.-|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445666777777777777776666554322111 0000000 111234679999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMG 381 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 381 (605)
|++..|.++.+...+.++++-+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888888988886544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.043 Score=41.20 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-------P-IQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|+.++|++.+++..++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444444444444444444433 1 1122 335666666777777777777777776553
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.76 Score=46.56 Aligned_cols=150 Identities=15% Similarity=0.073 Sum_probs=93.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH---H
Q 007396 311 MHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML---G 387 (605)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~ 387 (605)
+..+.+.-+++-++..+ +.||..+--.++ +--.+..+.+++++|++..+ .| ... |.+.... .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk-Ag----E~~-------lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK-AG----EAS-------LGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH-HH----HHh-------hchhhhhhccc
Confidence 44555666666666665 567665443333 33445678899999988773 11 000 1111100 1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...+.+.+-..+|-..+=..|..++.+.|+.++|++.++.+.+..|. +-.....|+..+...+++.++..++.+..+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111122233344455777788999999999999999988765 4557889999999999999999999998665
Q ss_pred CCCCCCccce
Q 007396 466 GLNQSPGFSL 475 (605)
Q Consensus 466 ~~~~~~~~s~ 475 (605)
...+....+|
T Consensus 325 ~lpkSAti~Y 334 (539)
T PF04184_consen 325 SLPKSATICY 334 (539)
T ss_pred cCCchHHHHH
Confidence 5555444443
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.09 E-value=4.1 Score=40.77 Aligned_cols=370 Identities=10% Similarity=0.095 Sum_probs=201.2
Q ss_pred HHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 49 KVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGA---FDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 49 ~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
++...+.. -+.|...|-+|+ ..| ..|.+++-++++++|..|-+ ..|..-|++=....+++....+|.+.+.
T Consensus 30 rLRerIkd--NPtnI~S~fqLi---q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLI---QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHH---HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 44554443 245678899999 999 99999999999999998754 4688888888788899999999999887
Q ss_pred CCCCCCcchHHHHHHHHHccCChHH------HHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---cC------CCHHHHHH
Q 007396 125 RGVEPDNFTFPALFKACAKLQALKE------GMQIHGHVFK-VGFECD-LFVQNSLINMYG---KC------EKVEFASA 187 (605)
Q Consensus 125 ~g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~-~~~~~~li~~y~---~~------g~~~~A~~ 187 (605)
..+. ...|..-|.-..+.+..-. ..+.|+..+. .+++|- ...|+..+...- .. .++|..++
T Consensus 105 k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 6544 4455555554444332221 2234444443 244443 344555444332 12 23455555
Q ss_pred HHHhcCC-C---------ChhHHHHHHHHHHH-------CCChhHHHHHHHHHHh--CCCCC----CChhHHHHH-----
Q 007396 188 IFKQMDQ-K---------SVASWSAIIAAHAS-------NGLWSECLKLFGEMNN--EKCWR----PEESILVSV----- 239 (605)
Q Consensus 188 ~~~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~~----p~~~t~~~l----- 239 (605)
.+.++.. | |-..|..=+..... .--+..|...+++... .| +. .+..|++-+
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G-l~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG-LSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc-ccccCchhhhhhcccccccc
Confidence 5655542 1 11111111111000 0112233333333321 01 10 011111110
Q ss_pred ------H-----------------------------------------HHHhccCChhhHHHHHHHHHHhcCCchHHHHh
Q 007396 240 ------L-----------------------------------------SACTHLGALDLGKCTHGSLIRNISALNVIVET 272 (605)
Q Consensus 240 ------l-----------------------------------------~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 272 (605)
| .-....++-+.|.+. +..|.+..+..--
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t----v~rg~~~spsL~~ 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT----VERGIEMSPSLTM 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH----HHhcccCCCchhe
Confidence 0 000111222222222 2234433333222
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCC---------------------------------CCeeeHHHHHHHHHhcCCHHHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMAD---------------------------------KCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~---------------------------------~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
-+-..|.-..+-+.....|+...+ +-...|...++.-.+..-.+.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 333444444444444444443210 01235666777777777778888
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHC-
Q 007396 320 SIFSEMLREG-LEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQH-YGCVVDLMGRAGMLGEALELIQSM- 396 (605)
Q Consensus 320 ~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m- 396 (605)
.+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...+ ||... -.-.+.-+.+.++-..|..+|+..
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 8888888877 5666677777776554 467777788877655332 33322 244555666777778888888754
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 397 -PIQQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 397 -~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+..+ ..+|..+|.--...|+...+..+-+++.+.-|.
T Consensus 494 ~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 494 ERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 22233 347778887777788888777777777777765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.8 Score=38.42 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHCC-------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhC----CCCCchHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSMP-------IQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQIN----SHHPSDYVLL 442 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m~-------~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l 442 (605)
.....|.+..++++|-..|.+-. --|+.. .+-+.|-.+....|+..|++.++.--+.. |.+..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 34445666666666655554431 112221 33444444555567777777777654442 4455556666
Q ss_pred HHHHHHcCChhHHHHHH
Q 007396 443 SNMYARAQRWYDVAKIR 459 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~ 459 (605)
+.+| ..|+.+++.++.
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 6665 456666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.94 Score=41.39 Aligned_cols=48 Identities=8% Similarity=0.000 Sum_probs=35.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHH
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 456 (605)
..-|.+.|.+..|..-++.+++.-|+.+ .....++.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3457888999999999999999888744 34567888899998877444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.13 Score=47.70 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=76.5
Q ss_pred HHHHHHhhcC--CCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC----------
Q 007396 83 YACSIFRQID--EPGAFDFNTLIRGFVKE-----VEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQ---------- 145 (605)
Q Consensus 83 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 145 (605)
..+..|...+ ++|-.+|-+++..+... +..+=.-..++.|.+.|+.-|..+|+.||+.+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4556777776 58888898888887654 445556677888999999999999999998775422
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 146 ------ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 146 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
+-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 233467888888888888888888888888887765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.92 E-value=5.7 Score=41.55 Aligned_cols=158 Identities=13% Similarity=0.030 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCc-----chHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhH
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFERG-VEPDN-----FTFPALFKACAK----LQALKEGMQIHGHVFKVGFECDLFV 168 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 168 (605)
...+++...=.|+-+.+++++.+-.+.+ +.-.. -.|..++..+.. ..+.+.+.++++.+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3345555556677888888877765532 21111 123444443332 346777888888887763 44433
Q ss_pred HH-HHHHHHHcCCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 169 QN-SLINMYGKCEKVEFASAIFKQMDQK-------SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 169 ~~-~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
|. --...+...|++++|.+.|+..... ....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 32 2335666778888888888865421 22234445555777788888888888888765 45555666555
Q ss_pred HHH-hccCCh-------hhHHHHHHHHH
Q 007396 241 SAC-THLGAL-------DLGKCTHGSLI 260 (605)
Q Consensus 241 ~a~-~~~~~~-------~~a~~~~~~~~ 260 (605)
.+| ...++. ++|..++.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 555 345555 56666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.38 Score=45.50 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=17.5
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
|+..|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555566666666666666666655554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.2 Score=37.90 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLG 387 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 387 (605)
..-|.+.|.+..|..-++.+.+++.-.+. ......++..|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34455556666666666655544322211 123344445555555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.52 Score=46.37 Aligned_cols=65 Identities=2% Similarity=-0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...+..|.-++.+.+++..|++...+.++++|+|......-+.+|...|.++.|...|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34666777778888999999999999999999999999999999999999999999999988743
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.67 E-value=5.4 Score=44.96 Aligned_cols=92 Identities=26% Similarity=0.257 Sum_probs=56.4
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV--YVGVLSACSHAGLVNE 352 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~ 352 (605)
.-+|.++|+.++|++. |...|++.+|+.+..+|.. .-|... -..|..-+...++.-+
T Consensus 959 al~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 4467777777776654 5556788888888777642 112221 2445666677777777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
|-++..+... .| .-.+..|+++-.+++|..+....
T Consensus 1018 Aa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1018 AAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 7666665542 12 23455667777777777776655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.7 Score=37.49 Aligned_cols=193 Identities=16% Similarity=0.097 Sum_probs=104.6
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC-----CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD-----KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS- 342 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 342 (605)
..+......+...+++..+...+..... .....+......+...+...++...+.........+.. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHH
Confidence 3444445555555555555555544321 12233444444555555566666666665543322211 1111112
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhc
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVP----TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN--DVVWRSLLSASKVH 415 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~a~~~~ 415 (605)
.+...|+.+.+...|..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 45566666666666666642 222 2233333333455666777777776665 33333 45666666667777
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 416 HNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++.+.+...+.......|.....+..+...+...|.++++...+....+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776654445555555555566677777777666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.38 Score=41.22 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMK----LEYRIVPTVQH 372 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 372 (605)
.++..+...|++++|..+.+.+.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666666666666666531 2244566666666666666666666665543 24466665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.56 Score=38.27 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=64.0
Q ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC----chHHHHHHHHHHcCCh
Q 007396 379 LMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP----SDYVLLSNMYARAQRW 452 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 452 (605)
+++..|+++.|++.|.+. .+-| +...||.-..+++-.|+.++|..-+++.+++.-+.. ..|+.-+..|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888765 3333 455788888888888888888888888887743212 2466677778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 007396 453 YDVAKIRTEMASKGL 467 (605)
Q Consensus 453 ~~a~~~~~~m~~~~~ 467 (605)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.3 Score=41.20 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=50.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCC---Chh----HHHHHHHHHHH---CCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 171 SLINMYGKCEKVEFASAIFKQMDQK---SVA----SWSAIIAAHAS---NGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
.++-.|-...+++...++++.+... ++. .-....-++-+ .|+.++|++++..+.... -.++..||..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 4555688889999999999988753 211 11223344555 789999999999865555 578888887776
Q ss_pred HHH
Q 007396 241 SAC 243 (605)
Q Consensus 241 ~a~ 243 (605)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 655
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=9.6 Score=41.54 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 170 NSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
...+..+++.++++...+.+.. +..+...--....+....|+.++|....+.+-..| .........++..+.+.|.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCC
Confidence 3344445566677766663322 22344444445556666777766766666666655 3344455555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.31 Score=49.05 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV----QHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+...++.+..+|...|++++|...|++.. .+.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34678888888999999999999998877 345663 34788888899999999999888886
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.6 Score=37.00 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCCh
Q 007396 134 FPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLW 213 (605)
Q Consensus 134 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 213 (605)
...++..+...+.......+++.+++.+. .+...+|.++..|++.+. .+..+.++. ..+......++..|-+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 34555555555666666666666666653 456667777777766532 233333331 12223333345555555555
Q ss_pred hHHHHHHHHH
Q 007396 214 SECLKLFGEM 223 (605)
Q Consensus 214 ~~A~~~~~~m 223 (605)
+++..++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.31 Score=45.24 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=82.6
Q ss_pred HHHHHhccC--CCCeeeHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----------
Q 007396 287 GLCLFRMMA--DKCQLTYSVMISGLAMH-----GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL---------- 349 (605)
Q Consensus 287 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 349 (605)
.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666665 66777888888877654 5677777888999999999999999999998765322
Q ss_pred ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHC
Q 007396 350 ------VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLG-EALELIQSM 396 (605)
Q Consensus 350 ------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 396 (605)
-+=+..++++|. .+|+.||-++-..|++++++.|..- +..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234678999998 7899999999999999999988643 334443333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.3 Score=42.40 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH----HHhcCCHHH
Q 007396 313 GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL----MGRAGMLGE 388 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~~ 388 (605)
|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|..+=.+ +..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3444444444444432 222333333333444444444444444444442 223333333222222 223445555
Q ss_pred HHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 389 ALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 389 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
|++.-++. .+.| |.-.-.++.......|+.+++.++.++
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55444443 3332 222333333444444444444444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.45 Score=44.37 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---CCchHHH
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-------PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---HPSDYVL 441 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~ 441 (605)
.|+.-++.| +.|++.+|.+.|... ...||..-| |..++...|+++.|...|..+.+-.|+ -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 354444443 345566666666554 123444444 566677777777777777777766554 3455666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
|+....+.|+.++|..+++...++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.08 E-value=3.3 Score=39.24 Aligned_cols=121 Identities=8% Similarity=-0.003 Sum_probs=84.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRS---LLSASKVHHNLE 419 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 419 (605)
.....|+..++...|+.... -.+-+...-..|...|...|+.+.|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567888888888888774 2223456667788899999999999999999975544433333 233333333333
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+... +++-...+|+|...-..|...|.-.|+.++|.+.+=.+.+++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3332 233345578888888999999999999999998887777654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.9 Score=36.30 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 007396 381 GRAGMLGEALELIQSM----PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS 437 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~ 437 (605)
.+.|++++|.+.|+.+ |..|- .-.-..|+.++.+.+++++|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3556777777777666 22221 224455667777778888888888888888777543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=5.4 Score=40.55 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=94.3
Q ss_pred eeH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 007396 300 LTY--SVMISGLAMH-----GQGKEALSIFSEMLR-EGLEPDDV-VYVGVLSACS---------HAGLVNEGLLCFDRMK 361 (605)
Q Consensus 300 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 361 (605)
..| ...+.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666655442 135678888888872 23566653 3322222211 1234455666665555
Q ss_pred HhcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 362 LEYRIV-PTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 362 ~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+. -|+.....+..++.-.|+++.|..+|++. ...||.. +|....-.+.-.|+.++|.+.+++.++++|.....
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 222 34556666666667777788888888887 5667654 55555555677888899999999988888875443
Q ss_pred H--HHHHHHHHHcCChhHHHHHH
Q 007396 439 Y--VLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 439 ~--~~l~~~~~~~g~~~~a~~~~ 459 (605)
- -..+++|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 3 23344565543 45666655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.2 Score=43.98 Aligned_cols=138 Identities=11% Similarity=-0.005 Sum_probs=94.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
.+.|.+.|++..|...|++.... |. +...-+.++..... . .-..++.-+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 35677777788877777776541 11 11111112222111 1 112355667778889999
Q ss_pred HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH-HHHHHHH
Q 007396 386 LGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV-AKIRTEM 462 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 462 (605)
+.+|.+.-++. ...| |+...--=..+|...|+++.|+..|+++++++|.|-.+-.-|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 4444 5556666677899999999999999999999999988888888877777666554 7788888
Q ss_pred HhC
Q 007396 463 ASK 465 (605)
Q Consensus 463 ~~~ 465 (605)
..+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.5 Score=44.32 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 007396 349 LVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGR---------AGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHH 416 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 416 (605)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889888855566676 3444444433321 22345666666665 4444 5556666666777788
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 417 NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.+.|...|+++..++|+.+..|...+....-+|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999876644
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.72 E-value=8.6 Score=38.75 Aligned_cols=406 Identities=12% Similarity=0.086 Sum_probs=218.3
Q ss_pred cChHHHHHHHHHHHHhCCCC-----chhhccccccccCccCCCChHHHHHHHhhcCCCC-cccHHHHHHHH--HhCCCch
Q 007396 42 KNLEEFKKVHAHVLKWGFFW-----NPFCASNLVATCALSHWGSMDYACSIFRQIDEPG-AFDFNTLIRGF--VKEVEFE 113 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~y~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~ 113 (605)
.+...+..++..+.+.--.. .....+.++ +.|-.++.+.....+....+.. ...|-.+..++ -+.+.++
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~gril---nAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL---NAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH---HHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 34667777777776643221 123456666 6663445666555555554411 33455555443 3667888
Q ss_pred HHHHHHHHHHHC--CCCC------------CcchHHHHHHHHHccCChHHHHHHHHHHHHhCC----CCchhHHHHHHHH
Q 007396 114 EALFLYNEMFER--GVEP------------DNFTFPALFKACAKLQALKEGMQIHGHVFKVGF----ECDLFVQNSLINM 175 (605)
Q Consensus 114 ~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~ 175 (605)
+|++.|..-.+. +.+| |-..=+..+.++...|.+.+|+.++++++..=+ .-+..+||.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888888776554 2222 111123455666788999999998888876544 3788889988887
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHC-------------------------------CChhHHHHHHHHHH
Q 007396 176 YGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASN-------------------------------GLWSECLKLFGEMN 224 (605)
Q Consensus 176 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-------------------------------g~~~~A~~~~~~m~ 224 (605)
+++.=-++.-. .+...=..-|--||..|.+. .+..--++++....
T Consensus 177 lsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 177 LSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 77542221111 11110011122222222211 11111222222223
Q ss_pred hCCCCCCChhH-HHHHHHHHhccCChhhHHHHHHHHHHhcCC----chHHHHhHHHhHHHhcCCHHHHHHHHhccC--CC
Q 007396 225 NEKCWRPEESI-LVSVLSACTHLGALDLGKCTHGSLIRNISA----LNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DK 297 (605)
Q Consensus 225 ~~g~~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~ 297 (605)
..- +.|+... ...+.....+ +.+.+..+-+.+....+. .-+..+..++....+.++...|.+.+.-+. +|
T Consensus 253 ~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 253 NFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred hhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 333 5565432 2233333333 455555554444433211 124456777777788888888887776554 33
Q ss_pred Cee-------eHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH---HHhccCC-HHHHHHHHHHhH
Q 007396 298 CQL-------TYSVMISGLA----MHGQGKEALSIFSEMLREGLEPDDV-VYVGVLS---ACSHAGL-VNEGLLCFDRMK 361 (605)
Q Consensus 298 ~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~---a~~~~g~-~~~a~~~~~~~~ 361 (605)
+.. +-..+-+..+ ..-+..+-+.+|+......+ |.. ....|+. -+-+.|. -++|..+++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 221 1112222222 12233344556666655433 322 1112222 2334454 788888888877
Q ss_pred HhcCCCC-ChHHHHHHH----HHHHhc---CCH---HHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCChHHHHHH
Q 007396 362 LEYRIVP-TVQHYGCVV----DLMGRA---GML---GEALELIQSMPIQQN----DVVWRSLLSA--SKVHHNLEIGEIA 424 (605)
Q Consensus 362 ~~~~~~p-~~~~~~~li----~~~~~~---g~~---~~A~~~~~~m~~~p~----~~~~~~ll~a--~~~~g~~~~a~~~ 424 (605)
+ +.| |...-|.+. ..|.++ ..+ -+-..++++.++.|- ...-|.|..| +..+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3 333 222222211 222221 112 223445555565553 3355666555 5789999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 425 AKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
-.-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 68999999999999999999999997643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.49 E-value=14 Score=40.50 Aligned_cols=174 Identities=12% Similarity=0.109 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchH----HHH
Q 007396 45 EEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEE----ALF 117 (605)
Q Consensus 45 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~ 117 (605)
+++..+.......+.. |..+...+. ..| +.|+.++|..++++... |+......+..+|++.+.+.+ |++
T Consensus 60 ~ea~~~Le~~~~~~~~-D~~tLq~l~---~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~ 135 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGT-DDLTLQFLQ---NVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQ 135 (932)
T ss_pred hhHHHHHhhhccCCCC-chHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333 666777777 889 99999999999999876 554445556677888777654 455
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHccC-C---------hHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 118 LYNEMFERGVEPDNFTFPALFKACAKLQ-A---------LKEGMQIHGHVFKVG-FECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 118 l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
++.. .+-+++.|-++++.....- . +..|....+.+++.+ ..-+..-.-.-.......|++++|.
T Consensus 136 LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 136 LYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 5542 3446777888887765432 1 233555666666554 2111111112223345678899999
Q ss_pred HHHHh-----cCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 187 AIFKQ-----MDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 187 ~~~~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
+++.. ...-+...-+--+..+...++|.+..++-.++...|
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 99832 233345555666777888899999999999988876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.1 Score=44.07 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred HHHHhCCCchHHHHHHH--HHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCC
Q 007396 104 RGFVKEVEFEEALFLYN--EMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEK 181 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (605)
....-+++++++.++.+ ++.. .++ ..-...+++-+-+.|-.+.|+++-. |+. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455688888777665 2221 122 3346777888888898888887543 322 23455678999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 182 VEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 182 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..++-.+.-.|+.+.-.++-+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999877665 567899999999999999999999887543 44555556666777666666666655
Q ss_pred hcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 262 NISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 262 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
.|- +|....++.-.|+.++..+++.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 551 3344444555666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.47 E-value=14 Score=40.29 Aligned_cols=110 Identities=20% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHH
Q 007396 105 GFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEF 184 (605)
Q Consensus 105 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (605)
-+-+.|++++|...|-+-... +.| ..+++-|.....+..--.+++.+.+.|+. +...-..|+++|.|.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344668888888877665432 233 23555666666666666777777888875 55556678888888888888
Q ss_pred HHHHHHhcCCCChh--HHHHHHHHHHHCCChhHHHHHHHH
Q 007396 185 ASAIFKQMDQKSVA--SWSAIIAAHASNGLWSECLKLFGE 222 (605)
Q Consensus 185 A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 222 (605)
-.+..+... .... -....+..+-+.+..++|..+-.+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 777776665 2111 133445555555555555544433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.45 E-value=3 Score=34.29 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISA 265 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 265 (605)
.+.-+......|+-+.-.+++.++.+.+ .+++..+..+..||.+.|+..++.+++.++.+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455677788888888888888887654 788888888889999999999998888888888753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.37 E-value=17 Score=41.35 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCC--ChhHHHHHHHHHHh
Q 007396 200 WSAIIAAHASNG--LWSECLKLFGEMNN 225 (605)
Q Consensus 200 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 225 (605)
.-.+|..|++.+ ..++|+....+.+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 335677888877 66777777766654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.19 E-value=11 Score=38.67 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLE-PDDVVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555566666666555543211 11223444555555555555555555544
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.96 E-value=11 Score=37.87 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHH-HHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYR-IVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVW-RSLLSA 411 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~a 411 (605)
..|...+++-.+..-++.|..+|-+..+ .+ +.+++..+++++..++ .|+..-|..+|+-- ..-||...| .-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3466677777777888999999999984 46 6778888999998776 46778888888764 334555533 445566
Q ss_pred HHhcCChHHHHHHHHHHHhhCC--CCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 412 SKVHHNLEIGEIAAKNLFQINS--HHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...++-+.|..+|+...+.-. .-...|..++.--..-|+...|..+-++|.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 6777888889999985443211 12457888888778888888888777777653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.67 E-value=9.5 Score=36.28 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=96.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
......|++.+|..+|.......-. +...-..+..++...|+++.|..++..+-.+.. .........-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 3456678888888888887764322 234445577788888888888888887653211 11111122345566666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCCchHHHHHHHHHHcCChhH-HHHHHHH
Q 007396 387 GEALELIQSMPIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN--SHHPSDYVLLSNMYARAQRWYD-VAKIRTE 461 (605)
Q Consensus 387 ~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 461 (605)
.+..++-.+..-.| |...--.|...+...|+.+.|.+.+=.+++.+ -.+...-..|+..+.--|.-+. +.+.+++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 66666666664456 44455666777888888888887777776654 3466677778888877775443 3333333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.59 E-value=4.9 Score=33.82 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+.|++++|.+.|+.+...+...| .....--++.+|.+.|++++|...+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34555555555555554333222 1233344555555555555555554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.3 Score=38.23 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=9.6
Q ss_pred HHHCCChhHHHHHHHHHHh
Q 007396 207 HASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~ 225 (605)
+-+.|++++|..+|+-+..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~ 65 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI 65 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3345555555555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.9 Score=43.15 Aligned_cols=133 Identities=16% Similarity=0.181 Sum_probs=79.8
Q ss_pred HHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 308 GLAMHGQGKEALSIFSEML-REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
.....|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. --++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 4455677777666664111 11111 33456667777777888888776443321 23455678888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 387 GEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 387 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.|.++.++.. +...|..|.......|+++.|++.+++.. -+..|+-.|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777664 66788888888888888888888887743 35567777888888777777776666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=9.4 Score=35.55 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGL--EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG 384 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 384 (605)
..-.+.|++++|.+.|+.+...-. +-...+...++-++.+.++.++|....++..+.++-.||.. |...+.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~-- 118 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSY-- 118 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHH--
Confidence 334566777777777777765421 11234555566666677777777777777766555555542 2233333331
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-----------------chHHHHHHHH
Q 007396 385 MLGEALELIQSMP-IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP-----------------SDYVLLSNMY 446 (605)
Q Consensus 385 ~~~~A~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~ 446 (605)
|..++ ...|.. -...|..-|+.+++.-|++. ..=...++-|
T Consensus 119 --------~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 119 --------FFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred --------hccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 000100 01233333444444444422 1124677889
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 007396 447 ARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~ 465 (605)
.+.|.|..|..-++.|.+.
T Consensus 178 ~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.34 Score=29.25 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35677777778888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.3 Score=39.81 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=93.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHhcC
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV--QHYGCVVDLMGRAG 384 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g 384 (605)
.|-..|-..-|.-=|.+... +.|+. ..||-+.--+...|+++.|.+.|+... .+.|+- .+.|.=|.. --.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y~Ya~lNRgi~~-YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIAL-YYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcchHHHhccceee-eecC
Confidence 35566666677666766665 77876 467777777889999999999999887 344432 222222222 2358
Q ss_pred CHHHHHHHHHHC----CCCCCHHHHHHHHHH--------------HHhcCChH-------------HHHHHHHHHHhhCC
Q 007396 385 MLGEALELIQSM----PIQQNDVVWRSLLSA--------------SKVHHNLE-------------IGEIAAKNLFQINS 433 (605)
Q Consensus 385 ~~~~A~~~~~~m----~~~p~~~~~~~ll~a--------------~~~~g~~~-------------~a~~~~~~~~~~~~ 433 (605)
++.-|.+-|... |..|-...|--+... +..+.+-. ..+.+++++.....
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 888877655444 434444455444321 11111000 01223333333222
Q ss_pred CC-------CchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 434 HH-------PSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 434 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
++ ..+|.-|+.-|...|..++|..+|+.....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 35688899999999999999999998876554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.49 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777778888888888877777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.98 E-value=15 Score=37.07 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=45.7
Q ss_pred cCCCChHHHHHHHhhcCCC------------------CcccHHHHHHHHHhCCCchHHHHHHHHHHHCC----CCCCcch
Q 007396 76 SHWGSMDYACSIFRQIDEP------------------GAFDFNTLIRGFVKEVEFEEALFLYNEMFERG----VEPDNFT 133 (605)
Q Consensus 76 y~~g~~~~A~~~f~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t 133 (605)
|+.+.++.|.+.|...... |..-=+..+..+...|++.++..++++|...= ..-|..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3888899988887655421 11223456677888999999999888887643 3367778
Q ss_pred HHHHHHHHHc
Q 007396 134 FPALFKACAK 143 (605)
Q Consensus 134 ~~~ll~~~~~ 143 (605)
|+.++-.+++
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8875544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.78 E-value=8.1 Score=33.69 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=80.7
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC--CHHHHHHHHHhcC
Q 007396 116 LFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE--KVEFASAIFKQMD 193 (605)
Q Consensus 116 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 193 (605)
++..+.+.+.+++|+...+..+++.+.+.|......+ ++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666777888888899999999998888765444 555665555554444333332211 1344455555543
Q ss_pred CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 194 QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
..+..++..+...|++-+|+++.+...... ......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 246667788888999999998887753222 22224455666666655554455544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.76 E-value=7.2 Score=32.93 Aligned_cols=115 Identities=13% Similarity=0.192 Sum_probs=67.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
+...-..++..+.+.+.+......++.+...+. .+...++.++..+++.+ .......+.. ..+......++.
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~ 77 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGK 77 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHH
Confidence 344556777888777888888888888887763 56667888888887653 3333333331 123333344566
Q ss_pred HHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHC-CChhHHHHHHHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASN-GLWSECLKLFGE 222 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 222 (605)
.+.+.+.++++.-++..+.. |...+..+... ++.+.|.+.+.+
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 66666666666666665533 22223333333 556666655543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.73 E-value=41 Score=41.49 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=173.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHcCCCHHHHHHHHHh-cCCCChhHHHHHHHHHHHCCC
Q 007396 136 ALFKACAKLQALKEGMQIHGHVFKVGF--ECDLFVQNSLINMYGKCEKVEFASAIFKQ-MDQKSVASWSAIIAAHASNGL 212 (605)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 212 (605)
++..+--+.+.+.+|...++.-..... ......+-.+...|+.-+++|...-+... ...++ ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 334445566778888877776311100 11234455566688888888887777663 33333 2334556677899
Q ss_pred hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHh
Q 007396 213 WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFR 292 (605)
Q Consensus 213 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 292 (605)
++.|..-|+++.+.+ ++...+++.++...-..+.++...-..+.......+.....++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999865 455778888888777777777666544444333222222223333444466777777666655
Q ss_pred ccCCCCeeeHHHH-HH-HHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH----------H
Q 007396 293 MMADKCQLTYSVM-IS-GLAMHG--QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF----------D 358 (605)
Q Consensus 293 ~m~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~ 358 (605)
..+..+|.+. +. .+.+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++. +
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566667665 22 222221 1111122333333221111 22222222222222111 1
Q ss_pred HhHHhcCCCCChH------HHHHHHHHHHhcCCHHHHHHHHHHC----CCCC----C-HHHHHHHHHHHHhcCChHHHHH
Q 007396 359 RMKLEYRIVPTVQ------HYGCVVDLMGRAGMLGEALELIQSM----PIQQ----N-DVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 359 ~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~-~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
......+..++.. -|..-+..-....+..+-.--+++. ..+| . ..+|-.....++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111123333221 1211111111111122211111111 1122 2 3389999999999999999998
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
..-.+.+..+ +..+.-.+......|+-..|..+++...+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8877777664 67889999999999999999999999886554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=2.4 Score=39.75 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGL----EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCV 376 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 376 (605)
|+.-+.. .+.|++.+|...|...++... .|| .+--|..++...|+.+.|..+|..+.++++-.|.. +.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444333 334556666666666665421 122 23335566666666666666666666554444432 444444
Q ss_pred HHHHHhcCCHHHHHHHHHHC
Q 007396 377 VDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m 396 (605)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 45555555555555555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.6 Score=44.03 Aligned_cols=130 Identities=19% Similarity=0.136 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHh----cCCHHHHHHHHHHC-CCCCCHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-----QHYGCVVDLMGR----AGMLGEALELIQSM-PIQQNDVVW 405 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~ 405 (605)
.+..+++...-.||-+.+.+.+....+..++.-.. -.|..++..+.- ....+.|.++++.+ ..-|+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34445555566677777777777665432332211 233333333332 44677788888887 445777766
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 406 RSLLS-ASKVHHNLEIGEIAAKNLFQINSH----HPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 406 ~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...-. .+...|+++.|++.+++....... ....+.-++..+.-.++|++|.+.+..+.+.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 55543 457788888888888876532211 3345667888888888888888888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.48 E-value=11 Score=34.29 Aligned_cols=197 Identities=16% Similarity=0.085 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhccCChhhHHHHHHHHHHh-cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHH-H
Q 007396 234 SILVSVLSACTHLGALDLGKCTHGSLIRN-ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMIS-G 308 (605)
Q Consensus 234 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~-~ 308 (605)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+......+ ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33334444444444444444444444331 223344445555555666666666666666555321 122333333 6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhc
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEP----DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRA 383 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 383 (605)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7788888888888888855 333 233444444446677888999988888873 2223 366777788888888
Q ss_pred CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 384 GMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 384 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+.++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8889998888877 44454 345555555555677799999999999888875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.28 E-value=3.2 Score=40.31 Aligned_cols=152 Identities=13% Similarity=-0.011 Sum_probs=66.0
Q ss_pred HHHCCChhHHHHHHHHHHhCCC-CCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhc--CCch---HHHHhHHHhHHHh
Q 007396 207 HASNGLWSECLKLFGEMNNEKC-WRPEESILVSVLSACTHLGALDLGKCTHGSLIRNI--SALN---VIVETSLIDMYVK 280 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~li~~y~~ 280 (605)
+....+.++|+..+.+-...-. ..---.+|..+..+.+..|.++++...--..++.- .... -..|-.+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766554210 11122355556666666666655543321111110 0111 1222333333333
Q ss_pred cCCHHHHHHHHhcc---CCCC-----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhcc
Q 007396 281 CGCLEKGLCLFRMM---ADKC-----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-D----DVVYVGVLSACSHA 347 (605)
Q Consensus 281 ~g~~~~A~~~f~~m---~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~ 347 (605)
.-++.+++.+-..- +..+ ....-+|..++.-.+.++++++.|+...+---.. | -..+..|-+.|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333333332211 1000 1122334445555555666666666554321111 1 13455555566666
Q ss_pred CCHHHHHHHHH
Q 007396 348 GLVNEGLLCFD 358 (605)
Q Consensus 348 g~~~~a~~~~~ 358 (605)
.|.++|.-+..
T Consensus 176 ~D~~Kal~f~~ 186 (518)
T KOG1941|consen 176 KDYEKALFFPC 186 (518)
T ss_pred HhhhHHhhhhH
Confidence 66666655443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.97 E-value=3.8 Score=33.63 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=53.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCCHH---HHHHHHHHHHhc
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQNDV---VWRSLLSASKVH 415 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~---~~~~ll~a~~~~ 415 (605)
+.+..|+++.|++.|.+... -.+-....||.-..++.-.|+.++|++=+++. +-+ ... .|..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 34556666666666666552 22234556666666666666666666655554 111 111 233333457788
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 007396 416 HNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~ 434 (605)
|+.+.|..-|+..-+++.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888888888888888764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=3.1 Score=35.97 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=58.0
Q ss_pred HcCCCHHHHHHHHHhcCCCChhHHHHHH-----HHHHHCCChhHHHHHHHHHHhCCCCCCChh-HHHHHHHH--HhccCC
Q 007396 177 GKCEKVEFASAIFKQMDQKSVASWSAII-----AAHASNGLWSECLKLFGEMNNEKCWRPEES-ILVSVLSA--CTHLGA 248 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~a--~~~~~~ 248 (605)
+..+..++|+.-|..+.+.+.-.|-.|. ...++.|+...|+..|++.-... -.|-.. -..-+=.+ +...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcccc
Confidence 3445556666666665544433333322 23455666666666666665443 233222 11111111 233444
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD 296 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 296 (605)
++....-.+-+...+-+.....-.+|.-+-.|.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444444444333333334444555566666666677777666666543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.39 E-value=20 Score=35.70 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH----HPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
...+|..+...+++.|+++.|...+.++.+.++. .+.....-+......|+..+|.+.++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999886632 456777788899999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.20 E-value=3.4 Score=39.70 Aligned_cols=115 Identities=11% Similarity=-0.011 Sum_probs=90.6
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHH----HHHHHHHHhcCChH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVW----RSLLSASKVHHNLE 419 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~ll~a~~~~g~~~ 419 (605)
-.|...+|-..++++.+ ..+.|...+...=+++.-.|+.+.-...++++ |. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35777788888888885 45667777777888899999999888888887 43 5665433 23333557889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+|++..++..++++.|.-+...+..++...|+..++.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999998888888888888899999988876554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.20 E-value=27 Score=36.70 Aligned_cols=378 Identities=11% Similarity=0.084 Sum_probs=218.6
Q ss_pred hccccccccCcc-CCCChHHHHHHHhhcCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007396 65 CASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFD-FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKA 140 (605)
Q Consensus 65 ~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 140 (605)
.++.|| .-- ...+.+.++.+++.+.. |...- |-....-=.+-|..+.+..+|++-+.. ++-+...|...+.-
T Consensus 47 ~wt~li---~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 47 AWTTLI---QENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred chHHHH---hccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344555 333 45555677777777654 55443 444444445668888899999888763 55555566655554
Q ss_pred HH-ccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHH---HC----
Q 007396 141 CA-KLQALKEGMQIHGHVFKV-GFE-CDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHA---SN---- 210 (605)
Q Consensus 141 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~---~~---- 210 (605)
+. ..|+.+.....|+.++.. |.. .....|-..|..-..++++.....+++++.+--...++..-..|. +.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 347788888888887765 321 244567777777778888889999998887644444444444433 22
Q ss_pred --CChhHHHHHHHHHHhC---CCCCCChhHHHHHHHHHhc-cCChhhHHHH------------------------HHHHH
Q 007396 211 --GLWSECLKLFGEMNNE---KCWRPEESILVSVLSACTH-LGALDLGKCT------------------------HGSLI 260 (605)
Q Consensus 211 --g~~~~A~~~~~~m~~~---g~~~p~~~t~~~ll~a~~~-~~~~~~a~~~------------------------~~~~~ 260 (605)
-..+++.++-...... +...+.......-+.--.. .+.++....+ ++.-+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2234444433332210 0011111222222211111 1112222211 11111
Q ss_pred Hh-------cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 261 RN-------ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 261 ~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
+. -..++..+|+..++.-.+.|+.+.+.-+|++..-+- ...|-..+.-.-..|+.+-|..++....+--+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 11 012345677777777788888888888888776442 23344444444444777777777666554322
Q ss_pred C--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHHC-CCCCCHH
Q 007396 331 E--PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRAGMLGEAL---ELIQSM-PIQQNDV 403 (605)
Q Consensus 331 ~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~ 403 (605)
+ |....+.+. -+-..|+.+.|..+++.+..+. |+. ..-..-+....+.|..+.+. +++... +.+-+..
T Consensus 363 k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 363 KKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred CCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 2 222223222 2445789999999999998643 553 33334456677888888887 555544 2233333
Q ss_pred HHHHHHH-----HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 404 VWRSLLS-----ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 404 ~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
+...+.- -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3333332 23556889999999999999999999999998888776653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.13 E-value=31 Score=37.39 Aligned_cols=48 Identities=17% Similarity=0.003 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHhhcCC--C---CcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDE--P---GAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
+.+.+++|..+-+.... + -...+-..|..+.-.|++++|-.+.-.|..
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 56777888877766554 1 223477788888888888888777777753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.7 Score=41.31 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556666677777777777777777777777777777777777777777777777776654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.85 E-value=2.6 Score=36.23 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
.++.+.++.++..+.-+.|..+..-..-+..+...|+|.+|..+++.+.
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.72 Score=28.36 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778889999999999999988854
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.55 E-value=5.2 Score=31.09 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 355666666666555422 333333344567789999999999999999999999887654 66777888888888888
Q ss_pred CCCCCCChhHHHH
Q 007396 226 EKCWRPEESILVS 238 (605)
Q Consensus 226 ~g~~~p~~~t~~~ 238 (605)
+| .|...+|..
T Consensus 97 sg--~p~lq~Faa 107 (115)
T TIGR02508 97 SG--DPRLQTFVA 107 (115)
T ss_pred CC--CHHHHHHHH
Confidence 87 666665543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.34 E-value=1.5 Score=38.74 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 380 MGRAGMLGEALELIQSM----PIQQ---NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
+.+.|.+++|..-|.+. |--+ ..+.|..-..+..+.+.++.|+.-..+.++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45667777777766655 2111 1234555556778899999999999999999998777777788899999999
Q ss_pred hHHHHHHHHHHhCC
Q 007396 453 YDVAKIRTEMASKG 466 (605)
Q Consensus 453 ~~a~~~~~~m~~~~ 466 (605)
++|..=++.+.+.+
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998865
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.06 E-value=26 Score=34.96 Aligned_cols=146 Identities=8% Similarity=-0.051 Sum_probs=70.8
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHH
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP---DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT--VQHY 373 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~ 373 (605)
..+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++..... .+..+ ....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 3467777777788888888888777776543211 1222333344455567777777777766631 11111 1111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHHCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 374 GCVVDLMGRAGMLGEALEL-IQSMPIQQNDVVWRSLLSASKV------HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
..+...+.. ..+..... ......+.-...+..+..-+.. .++.+.+...++.+.+..|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111100000 00000000 0000000001122222222223 37788888999999998887766766666555
Q ss_pred H
Q 007396 447 A 447 (605)
Q Consensus 447 ~ 447 (605)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.72 E-value=3.5 Score=34.78 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=33.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666666666655556666666666666666666665544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.59 E-value=42 Score=36.80 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=80.2
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 152 (605)
+.+ +.|++++|..-+-+... ..--..+|.-|....+..+--..++.+.+.|+. +...-..||.+|.+.++.+.-.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 444 88999999887766432 111123566666666677777788888888864 55555778888999888887666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
+.+..- .|.. .+-....+..+-+.+-.++|..+-..... +......+ +-..|++++|++.+..+
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 554432 1111 11123344455555555555555444332 22222222 23456666666666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.57 E-value=3.3 Score=39.35 Aligned_cols=76 Identities=9% Similarity=0.148 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHh-----CCCCCCChhHHH
Q 007396 166 LFVQNSLINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGEMNN-----EKCWRPEESILV 237 (605)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~p~~~t~~ 237 (605)
..++..++..+..+|+.+.+.+.++++.+. |...|..++.+|.+.|+...|+..|+++.. .| +.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg-i~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG-IDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC-CCccHHHHH
Confidence 356777888899999999999999888753 667899999999999999999999998865 45 666665554
Q ss_pred HHHHH
Q 007396 238 SVLSA 242 (605)
Q Consensus 238 ~ll~a 242 (605)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.47 E-value=13 Score=36.20 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHHc--c----CChHHHHHHHHHHHHhCC---CCchhHHHHHHHH
Q 007396 112 FEEALFLYNEMFERGVEPDNFTFPALFKACAK--L----QALKEGMQIHGHVFKVGF---ECDLFVQNSLINM 175 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~ 175 (605)
+++.+.+++.|.+.|.+-+.++|.+..-.... . ....++..+|+.|.+.-+ .++..++.+|+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 34567889999999998888887765444333 1 235568888888887643 3445556655544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=25 Score=33.86 Aligned_cols=181 Identities=8% Similarity=-0.010 Sum_probs=80.5
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCCh----hHHHHHHHHHHhCCCCCCChhHHHH
Q 007396 163 ECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLW----SECLKLFGEMNNEKCWRPEESILVS 238 (605)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~p~~~t~~~ 238 (605)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHH
Confidence 345555555566666666543333333333445555555556666666653 3566666665332 355555555
Q ss_pred HHHHHhccCChhh--HHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcC-CH
Q 007396 239 VLSACTHLGALDL--GKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHG-QG 315 (605)
Q Consensus 239 ll~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~ 315 (605)
.+.++...+.... ...........-..++..+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ ..
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 5555544432111 11222222222223344555555555555555332222223333333333333333333322 12
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL 349 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 349 (605)
.++...+..+.. .+|...-...+.++.+.|+
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 344444444442 2344444444455555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.77 E-value=27 Score=33.64 Aligned_cols=17 Identities=6% Similarity=-0.273 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHH
Q 007396 412 SKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~ 428 (605)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666543
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.10 E-value=2.5 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=11.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 99 FNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
|..+...|.+.|++++|.++|++.++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.04 E-value=31 Score=33.53 Aligned_cols=118 Identities=13% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCH
Q 007396 315 GKEALSIFSEMLREGLEPDDVVYVGVLSACSH--AG----LVNEGLLCFDRMKLEYRIVP--TVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 386 (605)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++++.+-. +...+..|+.. ..+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788999999998888877764433332 22 35678889999998776543 33444444333 33333
Q ss_pred ----HHHHHHHHHC---CCCC-CHH-HHHHHHHHHHhcCC--hHHHHHHHHHHHhhCCC
Q 007396 387 ----GEALELIQSM---PIQQ-NDV-VWRSLLSASKVHHN--LEIGEIAAKNLFQINSH 434 (605)
Q Consensus 387 ----~~A~~~~~~m---~~~p-~~~-~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~ 434 (605)
++++.+|+.+ ++.. |.. ....++..+....+ ...+..+++.+.+.+-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 3344444444 4433 222 33333333322222 33556666666666533
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.7 Score=26.72 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
+|..|...|...|++++|+.++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888999999999999886544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.60 E-value=1.5 Score=26.25 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
+|..+...+...|+.++|...+++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666777777777777777777666
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.43 E-value=28 Score=32.49 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=106.2
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC---ee---eHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC---QL---TYSVMISGLAMHGQGKEALSIFSEMLREG-LEPDDVVYV 338 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 338 (605)
|-...|+.- ..-.+.|++++|.+.|+.+..+. .. +--.++.++-+.+++++|+..+++..+.- -.|| .-|.
T Consensus 33 p~~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~ 110 (254)
T COG4105 33 PASELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYA 110 (254)
T ss_pred CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHH
Confidence 334445443 34457899999999999998543 22 33445667889999999999999988743 3343 3344
Q ss_pred HHHHHHh---cc----CCHHHHHHH---HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHH-HH-H
Q 007396 339 GVLSACS---HA----GLVNEGLLC---FDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDV-VW-R 406 (605)
Q Consensus 339 ~ll~a~~---~~----g~~~~a~~~---~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~-~ 406 (605)
..|.+.+ .. .|...+.+- |+.++.++ ||. .-..+|..-+..+. |.. -+ .
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHH
Confidence 4444444 21 222223333 33333221 221 11122222221110 111 11 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPS---DYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+..-|.+.|.+..|..-++.+++.-|+.+. .+..|..+|...|..++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 2344578889999999999999988665443 4567888899999999998887666543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.25 E-value=6 Score=35.10 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=43.6
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc--chHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007396 98 DFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDN--FTFPALFKACAKLQALKEGMQIHGHVFKV 160 (605)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 160 (605)
.+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|+.+...+++..+.....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667777788888888888888887776444332 24566777777777877777776666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.97 E-value=3.4 Score=39.29 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=58.7
Q ss_pred CCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC-C------CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007396 58 GFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE-P------GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEP 129 (605)
Q Consensus 58 g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 129 (605)
|...+..+...++ ..- ...+++++...+-+... | +... .+.++.+. .-++++++.++..=...|+-|
T Consensus 59 g~~~s~~~Vd~~V---~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLV---DVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhh---hccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 4444444455555 555 56777777776666543 1 1111 11222222 235667777777777777777
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKVG 161 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 161 (605)
|.++++.+|+.+.+.++...|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777777777777666666553
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.91 E-value=5.3 Score=33.05 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=52.0
Q ss_pred hcCChHHHHHHHHHHHh-hCCCC-CchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCC
Q 007396 414 VHHNLEIGEIAAKNLFQ-INSHH-PSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRS 491 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 491 (605)
...+..+++.+++.+.+ -.|.. .....-|.-++.+.|+++.+.++.+...+..
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e------------------------- 101 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE------------------------- 101 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC-------------------------
Confidence 34567788888988887 33442 3344557778889999999999998887643
Q ss_pred CcchHHHHHHHHHHHHHHHHCCcc
Q 007396 492 HPAWDNIYEMIHQMEWQLKFEGYS 515 (605)
Q Consensus 492 ~~~~~~~~~~l~~l~~~m~~~g~~ 515 (605)
|+.+++.++=+.+.+.|.+.|++
T Consensus 102 -~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 102 -PNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -CCcHHHHHHHHHHHHHHhhccee
Confidence 23345555555566788888764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.84 E-value=9.5 Score=33.84 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhccCCCCe------eeHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 270 VETSLIDMYVKCGCLEKGLCLFRMMADKCQ------LTYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 270 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
.+..+.+.|.+.|+.+.|.+.|.++.+..+ ..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666666666554321 234444555555555555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.60 E-value=23 Score=30.58 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=55.6
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChH
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRAGMLGEALELIQSMP-IQQNDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~ 419 (605)
..-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++. -.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33446678888888888876 445543 222223344677889999999998883 3344455566777665555444
Q ss_pred HHHHHHHHHHhhCC
Q 007396 420 IGEIAAKNLFQINS 433 (605)
Q Consensus 420 ~a~~~~~~~~~~~~ 433 (605)
.=....+++++.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 45555666666654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.90 E-value=37 Score=32.37 Aligned_cols=58 Identities=10% Similarity=-0.080 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.....|...|.+.+|.++.++++.++|-+...+-.|++.|+..|+--+|.+-++++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3345789999999999999999999999999999999999999998888888877753
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.38 E-value=8.9 Score=29.99 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
-+..+-+..+....+.|+.....+.|.||-+.+++..|.++|+.++.+.|- ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 355566666666778899999999999999999999999999998865443 33377766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.14 E-value=1.9 Score=26.13 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCCCHHHHH
Q 007396 155 GHVFKVGFECDLFVQNSLINMYGKCEKVEFAS 186 (605)
Q Consensus 155 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (605)
++.++..+. +...|+.|...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 334444422 5666666666666666666664
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.05 E-value=0.89 Score=38.76 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 318 (605)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666777788888888888888777667788889999999998877777777773332 4445566666666766666
Q ss_pred HHHHHHH
Q 007396 319 LSIFSEM 325 (605)
Q Consensus 319 ~~~~~~m 325 (605)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.60 E-value=2.8 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777788888888888888887766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.15 E-value=12 Score=28.99 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVD 378 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 378 (605)
+..++.+-+..+....+.|+.....+.|.||-+.+++..|.++|+..+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777778899999999999999999999999999998874433 24456666653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=46 Score=32.10 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=109.3
Q ss_pred cCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh----HHHHHHHHHHHHhCCCCch
Q 007396 91 IDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL----KEGMQIHGHVFKVGFECDL 166 (605)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~ 166 (605)
+..+|....-..+.++...|. .++...+..+... +|...=...+.+++..|+. .++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 344565556666666665554 3444444444432 3444444455556666653 3344444444222 4455
Q ss_pred hHHHHHHHHHHcCCCH-----HHHHHHHHh-cCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHH
Q 007396 167 FVQNSLINMYGKCEKV-----EFASAIFKQ-MDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVL 240 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll 240 (605)
.+-...+.+++..+.- ..+...+.. +..++...--..+.++.+.++ .+++..+-.+... +|...-...+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~ 180 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHH
Confidence 5555555555554321 122333322 223444444455555555554 4556666555542 2333333444
Q ss_pred HHHhccC-ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHH-hccCCCCeeeHHHHHHHHHhcCCHHHH
Q 007396 241 SACTHLG-ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLF-RMMADKCQLTYSVMISGLAMHGQGKEA 318 (605)
Q Consensus 241 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f-~~m~~~~~~~~~~li~~~~~~g~~~~A 318 (605)
.++.+.+ ....+...+..+. ..++..+-...+.++++.|+.. |...+ +.+..++ ..-..+.++...|.. +|
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKGT--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChh-HHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hH
Confidence 4444332 1222333333333 2345555666666666666633 33333 3333322 223455566666664 56
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007396 319 LSIFSEMLREGLEPDDVVYVGVLSAC 344 (605)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~a~ 344 (605)
+..+.++.+. .||...-...+.+|
T Consensus 254 ~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhh--CCChhHHHHHHHHH
Confidence 6666666542 33444444444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.66 E-value=0.54 Score=40.13 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=54.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 137 LFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
+++.+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566777888888888888777777777664332 3334455666666666666
Q ss_pred HHHHHHHH
Q 007396 217 LKLFGEMN 224 (605)
Q Consensus 217 ~~~~~~m~ 224 (605)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.53 E-value=23 Score=37.15 Aligned_cols=148 Identities=15% Similarity=0.018 Sum_probs=100.2
Q ss_pred hcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV-VYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
-.|+++.|..++-.++++ .-+.++.-+-..|..++|+++ .+|.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 356777777666666532 344455566667777776643 33332 2222 245688888888765
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
+.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 543 55678899999999999999999998763 36677777778888877667766666665543
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
.-..+|...|+++++.+++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 233467888999999888754
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.45 E-value=17 Score=30.76 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=25.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPT---VQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
..++.+++..+++.|. -+.|+ ..++. .-.+.+.|++++|..+|++.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhh
Confidence 4566666666666665 33343 22222 22345566666666666666
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.14 E-value=9.9 Score=25.85 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCc
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGY 514 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 514 (605)
...++-++.+.|++++|.+..+.+.+.. |...++..+-+.+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 4567788999999999999999998732 4456666666667788888774
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.2 Score=23.95 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHcCChhHHHHHHH
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.53 E-value=70 Score=33.13 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=94.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
|-...-+++..+.++..++-...+-.+|..-| -+...|..++..|... ..+.-..+++++++..+. |++...-|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 33456677888888888888888888888855 5777888888888877 556677788888877654 555566677
Q ss_pred hHHHhcCCHHHHHHHHhccCCC------Ce---eeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 007396 276 DMYVKCGCLEKGLCLFRMMADK------CQ---LTYSVMISGLAMHGQGKEALSIFSEMLRE-GLEPDDVVYVGVLSACS 345 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~ 345 (605)
..|-+ ++.+.+...|.+...+ +. ..|.-++..- ..+.+..+.+..+.... |..--.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 77766 7778887777765321 11 1333333210 22333444444443321 22222333444444455
Q ss_pred ccCCHHHHHHHHHHhH
Q 007396 346 HAGLVNEGLLCFDRMK 361 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~ 361 (605)
...++++|.+++..+.
T Consensus 217 ~~eN~~eai~Ilk~il 232 (711)
T COG1747 217 ENENWTEAIRILKHIL 232 (711)
T ss_pred cccCHHHHHHHHHHHh
Confidence 5555555555555554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.05 E-value=37 Score=29.65 Aligned_cols=39 Identities=5% Similarity=0.030 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 007396 152 QIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFK 190 (605)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (605)
++.+.+.+.++.|+...+..+|+.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445566677777777777777777776655544443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.54 E-value=12 Score=29.02 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH-HhCCCCchhHHHHHH
Q 007396 114 EALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVF-KVGFECDLFVQNSLI 173 (605)
Q Consensus 114 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 173 (605)
++.+-++.+....+.|++....+.++||.+.+|+..|.++++-+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 344555555556677888888888888888888888888887665 3332 333555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=80.46 E-value=27 Score=27.70 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
...++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 457788888888877764 234444444566778899999965555566788888877755 47788888888888887
Q ss_pred hCCCCCCChhHHH
Q 007396 225 NEKCWRPEESILV 237 (605)
Q Consensus 225 ~~g~~~p~~~t~~ 237 (605)
.+| .|....|.
T Consensus 97 ~~g--~~~~q~Fa 107 (116)
T PF09477_consen 97 SSG--SPELQAFA 107 (116)
T ss_dssp T-S--SHHHHHHH
T ss_pred hCC--CHHHHHHH
Confidence 776 45444443
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.44 E-value=3.4 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.++..|+..|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888999999999999999888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 7e-08
Identities = 30/251 (11%), Positives = 65/251 (25%), Gaps = 9/251 (3%)
Query: 230 RPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLC 289
P E L +L +LD+ + G + + + + L
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 290 LFRMMADKCQL-------TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342
L + + Q Y+ ++ G A G KE + + + GL PD + Y L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM--PIQQ 400
+ + + ++ RA +L ++ + P Q
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460
V S L + + + + + + + +
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328
Query: 461 EMASKGLNQSP 471
+
Sbjct: 329 KEVKHARKTLK 339
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 2e-05
Identities = 10/81 (12%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 99 FNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQ-IHGHV 157
+N ++ G+ ++ F+E +++ + + G+ PD ++ A + + ++ +
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 158 FKVGFECDLFVQNSLINMYGK 178
+ G + L++ +
Sbjct: 228 SQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 4e-04
Identities = 12/129 (9%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Query: 108 KEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQI---HGHVFKVGFEC 164
++ + + + + A FK C L + H +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 165 DLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA----SWSAIIAAHASNGLWSECL-KL 219
L + N+++ + + + + + + S++A + + + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 220 FGEMNNEKC 228
+M+ E
Sbjct: 224 LEQMSQEGL 232
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 83/571 (14%), Positives = 164/571 (28%), Gaps = 174/571 (30%)
Query: 100 NTLIRGFVKEVEFEEALFLYNEMFERGVEP----------------DNFTFPALF----K 139
+++ FV+EV FL + + +P DN F +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 140 ACAKLQ-ALKE-----GMQIHG----------------HVFKVGFECDLFVQNSLINMYG 177
KL+ AL E + I G + + + +F +N+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNL-K 190
Query: 178 KCEK----VEFASAIFKQMDQKSVASWSAIIAA-HASNGLWSECLKLFGEMNNEKC---- 228
C +E + Q+D + + + +E +L E C
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 229 ---WRPEESILVSVLSACTHLGALDLGKCTHGSLI--RNIS---ALNVIVETSLIDMYVK 280
+ A +L C L+ R L+ T + +
Sbjct: 251 LNVQNAK------------AWNAFNLS-CK--ILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 281 CGCLE-KGLCLFRMMAD-KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE-PDDVVY 337
+ L D + Q +++ LSI +E +R+GL D+ +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------RLSIIAESIRDGLATWDNWKH 349
Query: 338 VGVLSACSHAGLVNEGLLCFDRMK-LEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQS- 395
V C + E + ++ EYR + + + L +
Sbjct: 350 VN----CDKLTTIIE--SSLNVLEPAEYR-----KMF--------------DRLSVFPPS 384
Query: 396 --MPIQQNDVVWRSLLSASKVHHNLEIGEIAAK--NLFQINSHHPSDYVLLSNMYARAQR 451
+P ++W ++ + ++ + K + + + ++Y +
Sbjct: 385 AHIPTILLSLIWFDVIKS-------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 452 WYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDN-IYEMIHQMEWQLK 510
K+ E A L++ S+V+ F S D P D Y I
Sbjct: 438 -----KLENEYA---LHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-------- 477
Query: 511 FEGYSPDISQVLRDVDEDEKRERLKGHSQKLAIAFA-----LIH--LSQGSPIRIARNLR 563
G+ L++++ E+ + + + F + H + + I L
Sbjct: 478 --GHH------LKNIEHPERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTL- 524
Query: 564 MCNDCHTYTKLISV---IYEREIIVRDRKRF 591
Y I YER +V F
Sbjct: 525 --QQLKFYKPYICDNDPKYER--LVNAILDF 551
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.09 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.64 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.6 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.55 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.53 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.5 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.34 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.32 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.14 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.14 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.13 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.12 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.1 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.09 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.08 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.08 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.01 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.97 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.92 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.89 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.87 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.77 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.75 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.69 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.66 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.62 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.23 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.0 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.98 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.61 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.59 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.08 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.59 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.37 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.35 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.0 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.02 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.28 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.82 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.38 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.09 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.51 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.21 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.03 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.01 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.42 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.69 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=332.96 Aligned_cols=423 Identities=10% Similarity=-0.012 Sum_probs=370.6
Q ss_pred hHHHHHHHhc---cChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhc--CCCCcccHHHHHHH
Q 007396 32 QECLTILKTC---KNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQI--DEPGAFDFNTLIRG 105 (605)
Q Consensus 32 ~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~--~~~~~~~~~~li~~ 105 (605)
..+..++..+ ++.+.|..++..+++. .|+...+..+. ..| +.|++++|..+|+++ ..++..+|+.++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLA---QVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHH---HHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHH---HHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 3445555543 4578899999998854 46777788888 999 999999999999999 45889999999999
Q ss_pred HHhCCCchHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH-
Q 007396 106 FVKEVEFEEALFLYNEMFER---------------GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQ- 169 (605)
Q Consensus 106 ~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~- 169 (605)
|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.++. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 99999999999999953221 22335779999999999999999999999999988643 33333
Q ss_pred -------------------------------------HHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHC
Q 007396 170 -------------------------------------NSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIAAHASN 210 (605)
Q Consensus 170 -------------------------------------~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 210 (605)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 3336677789999999999999987 7899999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 211 GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 319 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999865 5578899999999999999999999999999765 55788999999999999999999999
Q ss_pred HhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 007396 291 FRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIV 367 (605)
Q Consensus 291 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 367 (605)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..++..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 99875 3467899999999999999999999999999853 347789999999999999999999999999853 23
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 368 PTVQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|+..++++.+.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46889999999999999999999999988 45787 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|..++.+|.+.|++++|.+.++++.+.+
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=328.00 Aligned_cols=415 Identities=8% Similarity=-0.051 Sum_probs=337.5
Q ss_pred Ccc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQ 152 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 152 (605)
..+ +.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|.+.|++++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 556 889999999999999999999999999999999999999999999985 46888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------------------ChhHHHHHHHHHHHCCCh
Q 007396 153 IHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK-------------------SVASWSAIIAAHASNGLW 213 (605)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~~ 213 (605)
+|+.+... .++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988644 678999999999999999999999999965433 378999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHH--------------------------------------HHHHHhccCChhhHHHH
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVS--------------------------------------VLSACTHLGALDLGKCT 255 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~--------------------------------------ll~a~~~~~~~~~a~~~ 255 (605)
++|+++|++|.+.+ +.+...+.. ++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 223333222 24556678899999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007396 256 HGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP 332 (605)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (605)
++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|..++++|.+. ...
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 9998876 5789999999999999999999999999886 346789999999999999999999999999864 344
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLS 410 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 410 (605)
+..++..+...|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 6789999999999999999999999999842 2345789999999999999999999999998 3344 6789999999
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCC-ccceEEECCEEEEE
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK----GLNQSP-GFSLVEVARKVYKF 485 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~s~~~~~~~~~~~ 485 (605)
+|...|++++|++.|+++.+..|.++.+|..++.+|.+.|++++|.++++++.+. +..|.. ...|. .+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~-------~l 522 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA-------NL 522 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH-------HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH-------HH
Confidence 9999999999999999999999999999999999999999999999999999875 434321 11221 11
Q ss_pred EecCCCCcchHHHHHHHHHHH
Q 007396 486 VSQDRSHPAWDNIYEMIHQME 506 (605)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~l~ 506 (605)
...+..+++.+++.+.++++.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 223455778888888776543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=256.07 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC---------hhhHHHHHHHHHHhcCCchHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA---------LDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 269 (605)
.++.+|.+|++.|++++|+++|++|.+.| ++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46667777777777777777777777777 77777777777777765543 456777777777777777777
Q ss_pred HHhHHHhHHHhcCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 270 VETSLIDMYVKCGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 270 ~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777775 45677777777777777778888888888888888888888888888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 382 (605)
+.|++++|.++|++|. +.+..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888887 46777888888877777764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=253.82 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=175.1
Q ss_pred HHHHHhhcCCC-----CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC---------hHH
Q 007396 84 ACSIFRQIDEP-----GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA---------LKE 149 (605)
Q Consensus 84 A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~ 149 (605)
+..++.++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44445555432 2235889999999999999999999999999999999999999999987654 688
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD----QKSVASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997 47999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 226 EKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
.| +.||..||+++|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 169 ~G-~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SE-VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TT-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cC-CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99 99999999999999999999999999999999999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-26 Score=231.02 Aligned_cols=368 Identities=11% Similarity=0.047 Sum_probs=275.9
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
..+ +.|++++|.+.|+++.+ | +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344 77888888888877643 3 34455666677777888888888888777653 3455678888888888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--K-SVASWSAIIAAHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (605)
|...++.+++..+. +...+..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++...
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88888888776532 456777888888888888888888877652 3 3456777777788888888888888888774
Q ss_pred CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHH
Q 007396 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYS 303 (605)
Q Consensus 227 g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~ 303 (605)
. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++.. ..+..+|.
T Consensus 165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 3 3456777778888888888888888888888765 3356677778888888888888888887654 33466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 382 (605)
.+...|...|++++|+..|+++.+. .| +..++..+..++...|++++|...|+.+.+. .+.+...+..+...+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8888888888888888888888774 34 3567777888888888888888888888742 34567778888888888
Q ss_pred cCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 383 AGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
.|++++|.+.++++ ...|+ ..+|..+..++...|++++|...++++.+..|+++..|..++..|...|
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 88888888888876 44454 5578888888888888888888888888888888888888887776665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=221.58 Aligned_cols=354 Identities=13% Similarity=0.079 Sum_probs=307.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDN-FTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE 180 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (605)
+...+.+.|++++|+..++++.+. .|+. ..+..+...+...|++++|...++..++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999999875 4554 456666677788999999999999998876 347889999999999999
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 181 KVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 181 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
++++|.+.|+++.+ .+..+|..+...+.+.|++++|++.|+++.... +.+...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998752 356689999999999999999999999998853 3345566777888889999999999999
Q ss_pred HHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C
Q 007396 258 SLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-D 333 (605)
Q Consensus 258 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~ 333 (605)
.+.+.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999875 4467889999999999999999999999876 334567888999999999999999999999874 45 4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSA 411 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a 411 (605)
..++..+..++...|++++|...|+.+... -+.+...|..+...|.+.|++++|.+.|+++ .. +++..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 678889999999999999999999999842 2335778999999999999999999999998 33 3466799999999
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-22 Score=209.28 Aligned_cols=385 Identities=8% Similarity=-0.082 Sum_probs=302.3
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEG 150 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 150 (605)
..| +.|++++|...|+++.. |+...|..+...+.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 556 88899999998888754 788888888888888899999999998888764 23445788888888888999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHH--------------------------------------hc
Q 007396 151 MQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFK--------------------------------------QM 192 (605)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--------------------------------------~m 192 (605)
...++.+.+.+.. +......++..+.+......+.+.+. ..
T Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999888887643 33333344443333222222222211 11
Q ss_pred C---------CC-ChhHHHHHHHHHHH---CCChhHHHHHHHHHHh-----CCCCCC--------ChhHHHHHHHHHhcc
Q 007396 193 D---------QK-SVASWSAIIAAHAS---NGLWSECLKLFGEMNN-----EKCWRP--------EESILVSVLSACTHL 246 (605)
Q Consensus 193 ~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~~p--------~~~t~~~ll~a~~~~ 246 (605)
. .+ +...|......+.. .|++++|+..|+++.. .. -.| +..++..+...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD-KNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc-cCccccccChHHHHHHHHHHHHHHHC
Confidence 0 01 13344444444554 8999999999999987 32 122 245677788888999
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFS 323 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (605)
|+++.|...++.+.+.... ...+..+...|...|++++|...|+++.. .+...|..+...|...|++++|...|+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999988755 88899999999999999999999998753 356788999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCC
Q 007396 324 EMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQ 399 (605)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~ 399 (605)
++.+... .+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..
T Consensus 329 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 329 KAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 9988532 24567888889999999999999999999853 2335678899999999999999999999887 222
Q ss_pred CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 400 QN----DVVWRSLLSASKV---HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 400 p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++ ...|..+...+.. .|++++|...++++.+..|.++..+..++.+|...|++++|.+.+++..+.+
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 32 3488899999999 9999999999999999999999999999999999999999999999998754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=200.88 Aligned_cols=298 Identities=11% Similarity=0.052 Sum_probs=203.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+.. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 45668888888888888888888888888753 345667888888888888888888888888888643 6778888888
Q ss_pred HHHcCCCHHHHHHHHHhcCCC---Ch---hHHHHHHH------------HHHHCCChhHHHHHHHHHHhCCCCCCChhHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQK---SV---ASWSAIIA------------AHASNGLWSECLKLFGEMNNEKCWRPEESIL 236 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~ 236 (605)
+|.+.|++++|.+.|+++.+. +. ..|..++. .+.+.|++++|+..|+++.... +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 888888888888888887643 23 55555543 3778888888888888887754 4566777
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC--CC-CeeeHHHH--------
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA--DK-CQLTYSVM-------- 305 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~-~~~~~~~l-------- 305 (605)
..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++. .+ +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 777777788888888888888777664 3456677777777777777777777777664 22 22333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007396 306 ----ISGLAMHGQGKEALSIFSEMLREGLEPD-----DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCV 376 (605)
Q Consensus 306 ----i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 376 (605)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+... .+.+...|..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 335 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 55566666666666666666552 333 234555555666666666666666665521 12245556666
Q ss_pred HHHHHhcCCHHHHHHHHHHC-CCCCC
Q 007396 377 VDLMGRAGMLGEALELIQSM-PIQQN 401 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m-~~~p~ 401 (605)
..+|.+.|++++|.+.++++ ...|+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 66666666666666666655 44443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=201.94 Aligned_cols=337 Identities=10% Similarity=0.036 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 007396 114 EALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD 193 (605)
Q Consensus 114 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 193 (605)
.+...|.+..... +.+...+..+...+.+.|++++|..+|+.+++... .+..++..+..+|.+.|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 33556788889999999999999999999998854 478899999999999999999999999876
Q ss_pred C---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCCh----hHHHHH------------HHHHhccCChhhHHH
Q 007396 194 Q---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEE----SILVSV------------LSACTHLGALDLGKC 254 (605)
Q Consensus 194 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~----~t~~~l------------l~a~~~~~~~~~a~~ 254 (605)
+ .+..+|..+...|.+.|++++|...|+++... .|+. ..+..+ ...+...|+++.|..
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 45779999999999999999999999999885 4543 455444 344888999999999
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
.++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++... .
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 999999876 4578889999999999999999999999876 346789999999999999999999999999874 4
Q ss_pred CCHH-HHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHH
Q 007396 332 PDDV-VYVGV------------LSACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELI 393 (605)
Q Consensus 332 p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~ 393 (605)
|+.. .+..+ ...|.+.|++++|..+|+.+... .|+ ..+|..+...+.+.|++++|.+.+
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5443 33333 78899999999999999999853 344 458899999999999999999999
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH------------HHHcC-----ChhH
Q 007396 394 QSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM------------YARAQ-----RWYD 454 (605)
Q Consensus 394 ~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~ 454 (605)
+++ ...| +...|..+..+|...|++++|...++++.+++|+++..+..+..+ |...| +.++
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 987 4445 567999999999999999999999999999999999999888844 55555 4455
Q ss_pred HHHHHHH
Q 007396 455 VAKIRTE 461 (605)
Q Consensus 455 a~~~~~~ 461 (605)
+.+.+++
T Consensus 399 ~~~~y~~ 405 (450)
T 2y4t_A 399 IIKAYRK 405 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=206.05 Aligned_cols=395 Identities=10% Similarity=-0.047 Sum_probs=310.0
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCc
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEF 112 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 112 (605)
.+-..++.+.|...+..+++.. |++..+..+. ..| +.|++++|...|+++.+ .+...|..+...+.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLS---ACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHH---HHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 3444567899999999999986 6788888888 899 99999999999998754 3556899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh--------------------------------
Q 007396 113 EEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKV-------------------------------- 160 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 160 (605)
++|+..|+++...+ +++......++..+........+.+.+..+.+.
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999999875 344445555555444333222222222111100
Q ss_pred ---CC---------CCchhHHHHHHHHHHc---CCCHHHHHHHHHhcCC----------------C-ChhHHHHHHHHHH
Q 007396 161 ---GF---------ECDLFVQNSLINMYGK---CEKVEFASAIFKQMDQ----------------K-SVASWSAIIAAHA 208 (605)
Q Consensus 161 ---g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~ 208 (605)
.. +.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00 1113344444444444 8999999999988654 1 3457888999999
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL 288 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 288 (605)
..|++++|+..|+++.... |+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|.
T Consensus 249 ~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999998854 448888889999999999999999999999876 446778999999999999999999
Q ss_pred HHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 007396 289 CLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYR 365 (605)
Q Consensus 289 ~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 365 (605)
..|++.. ..+...|..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+.+.....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 9999875 3356788999999999999999999999998752 22456788888999999999999999999875332
Q ss_pred CCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 366 IVPT----VQHYGCVVDLMGR---AGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 366 ~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
-.++ ...+..+...+.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+++|.++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 2233 4488999999999 99999999999987 3344 466888999999999999999999999999999877
Q ss_pred chHHHH
Q 007396 437 SDYVLL 442 (605)
Q Consensus 437 ~~~~~l 442 (605)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=195.48 Aligned_cols=379 Identities=10% Similarity=0.015 Sum_probs=268.6
Q ss_pred Ccc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
..| +.|++++|...|+++.. .+...|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 555 66677777776666543 345556666666666677777777777666643 2234456666666666677777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC----------------------------------
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK---------------------------------- 195 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---------------------------------- 195 (605)
|...++ .+... |+ ..+..+..+...+....|...++.+...
T Consensus 112 A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 766664 22221 11 1111222333333444455555444321
Q ss_pred ---Chh---HHHHHHHHHHH--------CCChhHHHHHHHHHHhCCCCCCC-h-------hHHHHHHHHHhccCChhhHH
Q 007396 196 ---SVA---SWSAIIAAHAS--------NGLWSECLKLFGEMNNEKCWRPE-E-------SILVSVLSACTHLGALDLGK 253 (605)
Q Consensus 196 ---~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~p~-~-------~t~~~ll~a~~~~~~~~~a~ 253 (605)
+.. .+..+...+.. .|++++|+.+|+++.+.. |+ . .++..+...+...|+++.|.
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 000 12222222211 247899999999998753 44 2 24666667788899999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL 330 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (605)
..+..+.+.... ...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|...|+++.+...
T Consensus 264 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 264 VLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 999999987644 7788889999999999999999999875 34567899999999999999999999999988532
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCC----CH
Q 007396 331 EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQ----ND 402 (605)
Q Consensus 331 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~ 402 (605)
.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..+ ..
T Consensus 342 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 342 -ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 23567888899999999999999999999853 2345678899999999999999999999886 1111 22
Q ss_pred HHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 403 VVWRSLLSASKVH----------HNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 403 ~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
..+..+...+... |++++|...++++.+.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2344555667777 999999999999999999999999999999999999999999999998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=185.14 Aligned_cols=387 Identities=11% Similarity=0.001 Sum_probs=292.1
Q ss_pred HhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC---CCcccHHHHHHHHHhCCCchH
Q 007396 39 KTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE---PGAFDFNTLIRGFVKEVEFEE 114 (605)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 114 (605)
...++.+.|...+..+++.. +.++..+..+. ..| +.|++++|.+.|+++.+ .+...|..+...+...|++++
T Consensus 36 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELD-PNEPVFYSNIS---ACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHH---HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhccHHHHHHHHHHHHhhC-CCCcHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH
Confidence 33456788999999999876 33566777777 888 99999999999998754 456788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCchh---------------------
Q 007396 115 ALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVG------FECDLF--------------------- 167 (605)
Q Consensus 115 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~--------------------- 167 (605)
|+..|+.+.. .|+.. ...+..+...+....+...++.+++.. ..|+..
T Consensus 112 A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999974422 33322 122334444555667777777775431 111111
Q ss_pred ---------HHHHHHHHHHcC--------CCHHHHHHHHHhcCCC--C--------hhHHHHHHHHHHHCCChhHHHHHH
Q 007396 168 ---------VQNSLINMYGKC--------EKVEFASAIFKQMDQK--S--------VASWSAIIAAHASNGLWSECLKLF 220 (605)
Q Consensus 168 ---------~~~~li~~y~~~--------g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~ 220 (605)
....+...|... |++++|..+|+++.+. + ..+|..+...+...|++++|+..|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333333333332 4789999999988653 2 225777778899999999999999
Q ss_pred HHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CC
Q 007396 221 GEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DK 297 (605)
Q Consensus 221 ~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~ 297 (605)
++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|.+.|++.. ..
T Consensus 267 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 267 QESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 999984 5678888899999999999999999999999876 4467889999999999999999999999875 34
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHH
Q 007396 298 CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP----TVQHY 373 (605)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~ 373 (605)
+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 56789999999999999999999999998853 23456888889999999999999999999874321111 22334
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 374 GCVVDLMGRA----------GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 374 ~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
..+...|.+. |++++|...|++. ...| +...|..+...+...|+.++|...++++.++.|.++...
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 5556777777 9999999999987 3344 456899999999999999999999999999999866543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-17 Score=165.30 Aligned_cols=305 Identities=8% Similarity=-0.033 Sum_probs=214.5
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 207 (605)
...+..+...+...|++++|...++.+++..+. +..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 445667777888888999999999888887643 677888888888888888888888887653 3567788888888
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCC---C-hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRP---E-ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p---~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
...|++++|+..|++.... .| + ...+..+.... ....+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccC
Confidence 8888888888888888764 35 2 22222221100 01112234556666777
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
+++|.+.|+++. ..+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777776654 2344566666677777777777777777776532 234556666667777777777777777776
Q ss_pred HHhcCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHHhcCChHHH
Q 007396 361 KLEYRIVPT-VQHYG------------CVVDLMGRAGMLGEALELIQSM-PIQQNDV-----VWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 361 ~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~a~~~~g~~~~a 421 (605)
.+. .|+ ...+. .+...+.+.|++++|.+.+++. ...|+.. .+..+...+...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 632 222 22222 2356688889999999988886 3334422 344567788899999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...++++.+.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999989999999999999999999999999888753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-18 Score=168.17 Aligned_cols=317 Identities=9% Similarity=0.004 Sum_probs=223.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 95 GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34567888899999999999999999998864 335668888899999999999999999999998643 6788999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCC------hhHHHHH------------HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQKS------VASWSAI------------IAAHASNGLWSECLKLFGEMNNEKCWRPEESIL 236 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~~------~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~ 236 (605)
+|.+.|++++|...|++..+.+ ...|..+ ...+...|++++|+..|+++.... +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 9999999999999999986532 3344444 456667777777777777766643 3344444
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHH
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGK 316 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 316 (605)
..+...+...|+++.|...+..+.+.. +.+. ..|..+...|...|+++
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------------------------------~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNT-------------------------------EAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-------------------------------HHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------------------------------HHHHHHHHHHHHcCCHH
Confidence 444444455555555555555444433 2233 34445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCH-HH------------HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHH
Q 007396 317 EALSIFSEMLREGLEPDD-VV------------YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV--QHYGCVVDLMG 381 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~-~t------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~ 381 (605)
+|...|++..+. .|+. .. ...+...+...|++++|...++.+.....-.+.. ..+..+...+.
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 555555555542 2221 11 1223556778888888888888887432111111 23556778888
Q ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 382 RAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 382 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++.+++|+++..+..+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 899999999998887 3345 5668888999999999999999999999999999888877777766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=173.58 Aligned_cols=344 Identities=13% Similarity=0.056 Sum_probs=161.3
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGH 156 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (605)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8899999999999997664 9999999999999999999999653 6888999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHH
Q 007396 157 VFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESIL 236 (605)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~ 236 (605)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhH
Confidence 8774 45688899999999999999999988864 67789999999999999999999999976 268
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHH
Q 007396 237 VSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGK 316 (605)
Q Consensus 237 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 316 (605)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999888 278999999999999999999988777655 34444556889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHhcCCHHH
Q 007396 317 EALSIFSEMLREGLEPDDVVYVGVLSACSH--AGLVNEGLLCFDRMKLEYRIVP------TVQHYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 388 (605)
+|..+++...... +-....|+-+.-++++ .+++.+..+.|. .+-+++| +...|.-++..|..-|+++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987532 2334455555555554 444555555444 3335555 46789999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHH
Q 007396 389 ALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 389 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
|...+-+-+ |+..--..+.....+..+.|.--++..--++..| ...+.|..++...=+...+.+++
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHH
Confidence 988765552 2322233334444555555554444444444433 23344444443333344443333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-17 Score=160.93 Aligned_cols=286 Identities=10% Similarity=0.001 Sum_probs=167.7
Q ss_pred CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHH
Q 007396 128 EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAII 204 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 204 (605)
+.+...+......+...|++++|..+++.+++..+. +...+..++..+.+.|++++|...|+++.+ .+...|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334445555555555556666666666665555422 333444444555555555555555555432 2344555555
Q ss_pred HHHHHCC-ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 205 AAHASNG-LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 205 ~~~~~~g-~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
..+...| ++++|...|++..... +. +...+..+...|...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KT-----------------------------------YGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TT-----------------------------------CTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--Cc-----------------------------------cHHHHHHHHHHHHHccC
Confidence 5555555 5555555555555432 22 33344455555555555
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
+++|.+.|+++. ..+...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|..+|+.+
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555555443 2233445556666666666666666666666532 223456666666667777777777777666
Q ss_pred HHhcC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 361 KLEYR-------IVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 361 ~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
..... .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 53211 1233567777777777788888887777776 2233 4557777778888888888888888888888
Q ss_pred CCCCCchHHHHHHHH-HHcCCh
Q 007396 432 NSHHPSDYVLLSNMY-ARAQRW 452 (605)
Q Consensus 432 ~~~~~~~~~~l~~~~-~~~g~~ 452 (605)
+|+++..+..++.++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 888887877777777 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=156.39 Aligned_cols=264 Identities=8% Similarity=-0.031 Sum_probs=217.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+...+..+...+...|++++|+++|+++.... +.+...+..++.++...|+++.|..++..+.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566667777777788888888888877654 4445566666677777888888888888887765 34677888899
Q ss_pred hHHHhcC-CHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 007396 276 DMYVKCG-CLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 276 ~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 351 (605)
..|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998753 3467899999999999999999999999988532 23466777888999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC----------CCCHHHHHHHHHHHHhcCChHH
Q 007396 352 EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI----------QQNDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 352 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~a~~~~g~~~~ 420 (605)
+|..+|+.+.. -.+.+...+..+...|.+.|++++|.+.+++. .. .....+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999984 22445788999999999999999999999876 11 2335689999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
|...++++.+..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=160.68 Aligned_cols=279 Identities=8% Similarity=-0.054 Sum_probs=209.1
Q ss_pred cCCCHHHHHH-HHHhcCC---C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh
Q 007396 178 KCEKVEFASA-IFKQMDQ---K----SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 178 ~~g~~~~A~~-~~~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3466777776 6664432 1 24457777777778888888888888777754 44566777777777778888
Q ss_pred hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHH---------------HHHHHHh
Q 007396 250 DLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSV---------------MISGLAM 311 (605)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~~~ 311 (605)
+.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888887777765 346677777888888888888888888766422 1222211 2333448
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007396 312 HGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEAL 390 (605)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 390 (605)
.|++++|...|+++.+..... +..++..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999998853221 4788889999999999999999999998843 2345788999999999999999999
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHHcCChhHHHH
Q 007396 391 ELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH-----------PSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 391 ~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
+.++++ ...| +...|..+..++...|++++|...++++.+..|.+ ...|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 4444 46689999999999999999999999999998876 6889999999999999999998
Q ss_pred HHHH
Q 007396 458 IRTE 461 (605)
Q Consensus 458 ~~~~ 461 (605)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=160.29 Aligned_cols=284 Identities=10% Similarity=-0.004 Sum_probs=154.4
Q ss_pred CCCchHHHH-HHHHHHHCCC---CCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHH
Q 007396 109 EVEFEEALF-LYNEMFERGV---EPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEF 184 (605)
Q Consensus 109 ~g~~~~A~~-l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (605)
.|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++..+ .+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 466777776 6665543211 11344566777777777888888888877777653 356677777778888888888
Q ss_pred HHHHHHhcC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH---------------HHHHhcc
Q 007396 185 ASAIFKQMD---QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV---------------LSACTHL 246 (605)
Q Consensus 185 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l---------------l~a~~~~ 246 (605)
|.+.|+++. ..+..+|..+...|...|++++|+..|+++.... +.+...+... +..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 888777654 3456678888888888888888888888887743 2222222111 1111234
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
|+++.|...+..+.+..... .+..+|..+...|...|++++|+..|+++.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444332111 023344445555555555555555555554
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-----
Q 007396 327 REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ----- 400 (605)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----- 400 (605)
+.. +.+..++..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|.+.|++. ...|
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 421 122345555555555555555555555555421 1223445555555555556666555555554 1111
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 401 -------NDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 401 -------~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
...+|..+..++...|+.++|..++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1346666666666666666666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-15 Score=156.43 Aligned_cols=351 Identities=10% Similarity=-0.020 Sum_probs=281.1
Q ss_pred CCChHHHHHHHhhcCC-CCcccHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----cCChH
Q 007396 78 WGSMDYACSIFRQIDE-PGAFDFNTLIRGFVK----EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK----LQALK 148 (605)
Q Consensus 78 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 148 (605)
.++++.|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 7899999999987654 466778888888888 899999999999998865 55667777777777 78999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----CCChhHHHHH
Q 007396 149 EGMQIHGHVFKVGFECDLFVQNSLINMYGK----CEKVEFASAIFKQMDQ-KSVASWSAIIAAHAS----NGLWSECLKL 219 (605)
Q Consensus 149 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 219 (605)
+|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999998886 56778888888887 7899999999987654 467788888888888 8999999999
Q ss_pred HHHHHhCCCCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----cCCHHHHHHHH
Q 007396 220 FGEMNNEKCWRPEESILVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----CGCLEKGLCLF 291 (605)
Q Consensus 220 ~~~m~~~g~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f 291 (605)
|++..+.| +...+..+...+.. .++.+.|..+++...+.+ +...+..+..+|.. .++.++|.++|
T Consensus 210 ~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 210 YRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 99988765 45566666666664 788999999999988876 45566778888887 89999999999
Q ss_pred hccCCC-CeeeHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHH
Q 007396 292 RMMADK-CQLTYSVMISGLAMH-----GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG---LVNEGLLCFDRMKL 362 (605)
Q Consensus 292 ~~m~~~-~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~ 362 (605)
++..+. +...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 987654 556777788888877 89999999999998865 4456666776776656 78999999999884
Q ss_pred hcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCC
Q 007396 363 EYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 363 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~ 434 (605)
. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|.. .++.++|...++++.+.+|+
T Consensus 360 -~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 -K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp -T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred -C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 2 467788888888888 78999999999887222356788888888887 89999999999999999854
Q ss_pred ---CCchHHHHHHHHHH
Q 007396 435 ---HPSDYVLLSNMYAR 448 (605)
Q Consensus 435 ---~~~~~~~l~~~~~~ 448 (605)
++.....|..++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 55555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-14 Score=149.30 Aligned_cols=353 Identities=10% Similarity=-0.009 Sum_probs=295.5
Q ss_pred CCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCC
Q 007396 93 EPGAFDFNTLIRGFVK----EVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK----LQALKEGMQIHGHVFKVGFEC 164 (605)
Q Consensus 93 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 164 (605)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3567777788888887 899999999999998875 56677778888887 899999999999999876
Q ss_pred chhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCCChhH
Q 007396 165 DLFVQNSLINMYGK----CEKVEFASAIFKQMDQ-KSVASWSAIIAAHAS----NGLWSECLKLFGEMNNEKCWRPEESI 235 (605)
Q Consensus 165 ~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t 235 (605)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 66778888899988 8899999999998764 466788888888887 889999999999998865 5667
Q ss_pred HHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----cCCHHHHHHHHhccCCC-CeeeHHHHH
Q 007396 236 LVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----CGCLEKGLCLFRMMADK-CQLTYSVMI 306 (605)
Q Consensus 236 ~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li 306 (605)
+..+...+.. .++.++|...+....+.+ +...+..+..+|.. .++.++|.++|++..+. +...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776 789999999999999876 45677888888887 89999999999987644 556777777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 307 SGLAM----HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA-----GLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 307 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
..|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|+...+ .+ +...+..+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHH
Confidence 78887 899999999999998764 455666677777776 899999999999884 33 456777788
Q ss_pred HHHHhcC---CHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH--
Q 007396 378 DLMGRAG---MLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR-- 448 (605)
Q Consensus 378 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 448 (605)
.+|.+.| ++++|.+.|++.-...+...+..|...|.. .++.++|...+++..+.+ ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888766 789999999987223567788889999988 899999999999999875 47788999999998
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 007396 449 --AQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 449 --~g~~~~a~~~~~~m~~~~~ 467 (605)
.++.++|.+.+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-15 Score=157.06 Aligned_cols=392 Identities=9% Similarity=0.056 Sum_probs=280.7
Q ss_pred chhhccccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007396 62 NPFCASNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPAL 137 (605)
Q Consensus 62 ~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 137 (605)
+...|..++ . + +.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...
T Consensus 12 ~~~~w~~l~---~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILI---R-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHH---H-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CHHHHHHHH---H-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 556677777 6 5 78899999999998865 4 4556889999999999999999999999875 3676666666
Q ss_pred HHHH-HccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHc---------CCCHHHHHHHHHhcCC-CC---h
Q 007396 138 FKAC-AKLQALKEGMQ----IHGHVFKV-GFEC-DLFVQNSLINMYGK---------CEKVEFASAIFKQMDQ-KS---V 197 (605)
Q Consensus 138 l~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~-~~---~ 197 (605)
+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|+++|++..+ |+ .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 5433 34566666554 77766654 5443 46778877777655 6889999999988764 22 1
Q ss_pred hHHHHHHHHH-------------HHCCChhHHHHHHHHHH------hCC--CCCCCh--------hHHHHHHHHHhcc--
Q 007396 198 ASWSAIIAAH-------------ASNGLWSECLKLFGEMN------NEK--CWRPEE--------SILVSVLSACTHL-- 246 (605)
Q Consensus 198 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g--~~~p~~--------~t~~~ll~a~~~~-- 246 (605)
..|....... .+.+++.+|..++.++. +.. .++|+. ..|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2343322210 12345677777776532 211 023431 2344333322221
Q ss_pred --CCh----hhHHHHHHHHHHhcCCchHHHHhHHHhHHHh-------cCCHH-------HHHHHHhccCC---C-CeeeH
Q 007396 247 --GAL----DLGKCTHGSLIRNISALNVIVETSLIDMYVK-------CGCLE-------KGLCLFRMMAD---K-CQLTY 302 (605)
Q Consensus 247 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~ 302 (605)
++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|.++|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 222 35667888888764 4567888888888876 69987 89999998764 3 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDD--VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDL 379 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 379 (605)
..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|++++|..+|+...+. .| +...|......
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 9999999999999999999999998 45653 47888888888899999999999999842 33 23334333322
Q ss_pred -HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHHcCCh
Q 007396 380 -MGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS----DYVLLSNMYARAQRW 452 (605)
Q Consensus 380 -~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 452 (605)
+...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+|+++.+..|.++. .+...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999987 3334 4679999999999999999999999999998776655 677778888889999
Q ss_pred hHHHHHHHHHHhC
Q 007396 453 YDVAKIRTEMASK 465 (605)
Q Consensus 453 ~~a~~~~~~m~~~ 465 (605)
+.+.++.+++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-15 Score=154.00 Aligned_cols=365 Identities=12% Similarity=-0.076 Sum_probs=241.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhC------
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFER-----G--VEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVG------ 161 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 161 (605)
...||.|...+...|++++|++.|++..+. + ..|+ ..+|..+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888989999999999999999887542 1 1233 3578888889999999999999998887641
Q ss_pred CC-CchhHHHHHHHHHHcC--CCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHHCCChhHHHHHHHHHHhCCCCCCC
Q 007396 162 FE-CDLFVQNSLINMYGKC--EKVEFASAIFKQMDQ--K-SVASWSAIIAA---HASNGLWSECLKLFGEMNNEKCWRPE 232 (605)
Q Consensus 162 ~~-~~~~~~~~li~~y~~~--g~~~~A~~~~~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~p~ 232 (605)
.. ....+++.+..++.+. +++++|.+.|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 11 1345666555555554 468999999988652 3 45555555444 445688889999999888754 345
Q ss_pred hhHHHHHHHHHh----ccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHH
Q 007396 233 ESILVSVLSACT----HLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVM 305 (605)
Q Consensus 233 ~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~l 305 (605)
...+..+...+. ..++++.|.+.++...+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 555555554443 3467888999999888876 4467788889999999999999999998775 2344566666
Q ss_pred HHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 007396 306 ISGLAM-------------------HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI 366 (605)
Q Consensus 306 i~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 366 (605)
...|.. .+..++|...|++..+.. +.+..++..+...+...|++++|...|++... .
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~-- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-K-- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-S--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-c--
Confidence 555533 234667888888877642 22345677888899999999999999999873 2
Q ss_pred CCChH----HHHHHHH-HHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 367 VPTVQ----HYGCVVD-LMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 367 ~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.|+.. .+..+.. .+.+.|+.++|.+.|++. .+.|+...+... .+.+..++++.++.+|.++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 33322 2222322 234679999999999886 666765544333 34456778888899999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 441 LLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
.|+.+|...|++++|.+.+++..+.+-......+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999998765433344553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-16 Score=149.95 Aligned_cols=267 Identities=10% Similarity=-0.014 Sum_probs=195.2
Q ss_pred HcCCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhH
Q 007396 177 GKCEKVEFASAIFKQMDQKSV----ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLG 252 (605)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a 252 (605)
...|++..|.+.++.....+. ...-.+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345666666666666554332 2334455666677777666665433 1 245556666666666666677777
Q ss_pred HHHHHHHHHhcC-CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 253 KCTHGSLIRNIS-ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
.+.++.+...+. +.+...+..+...|.+.|++++|++.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777776666553 33566677788899999999999999998 456778889999999999999999999999985 4
Q ss_pred CCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHH
Q 007396 332 PDDVVY---VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWR 406 (605)
Q Consensus 332 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 406 (605)
|+.... ..++..+...|++++|..+|+++... .+.+...++.+...+.+.|++++|.+.+++. ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664321 12334444568999999999999854 4567889999999999999999999999996 4455 456899
Q ss_pred HHHHHHHhcCChHH-HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 407 SLLSASKVHHNLEI-GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 407 ~ll~a~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
.++..+...|+.++ +.++++++.+.+|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999875 678999999999998754 3455666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-18 Score=166.87 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=97.9
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567777777777777554 3777777777777777777777753 2455677777777777777777777666
Q ss_pred HHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007396 258 SLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVY 337 (605)
Q Consensus 258 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 337 (605)
...+. .+++.+.+.++.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 66653 33466677777788888888777777753 55667777888888888888888887765 367
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007396 338 VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHN 417 (605)
Q Consensus 338 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~ 417 (605)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 77777778888888887777765 25677777888888888888886655555444433 3357777778888
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc--CChhHHHHHH
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARA--QRWYDVAKIR 459 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 459 (605)
+++|..+++..+.+++...+.|.-|..+|++- ++..+..+.|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888888777777777777777777654 3444444444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=158.25 Aligned_cols=259 Identities=7% Similarity=-0.091 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
..|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+++.|...++.+.+.. +.+..++..+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345555666666666666666666665543 3345556666666666666666666666666554 2345566666667
Q ss_pred HHhcCCHHHHHHHHhccCCCC-------------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMADKC-------------QLTYSVMISGLAMHGQGKEALSIFSEMLREGLE-PDDVVYVGVLSA 343 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a 343 (605)
|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|...|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777666654211 223445678889999999999999999885322 157788899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a 421 (605)
+...|++++|..+|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ ...|+ ..+|..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998843 2345788999999999999999999999987 44454 66899999999999999999
Q ss_pred HHHHHHHHhhCCC------------CCchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 422 EIAAKNLFQINSH------------HPSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 422 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
...++++.++.|. +...+..|..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 356789999999999999988877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=158.48 Aligned_cols=225 Identities=11% Similarity=-0.008 Sum_probs=133.7
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAH 207 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 207 (605)
...+..+...+.+.|++++|...++.+++..+. +..++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344666677777777777777777777776533 566777777777777777777777776642 3566777788888
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCCCh-h----------HHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-hHHHHhHHH
Q 007396 208 ASNGLWSECLKLFGEMNNEKCWRPEE-S----------ILVSVLSACTHLGALDLGKCTHGSLIRNISAL-NVIVETSLI 275 (605)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~~p~~-~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li 275 (605)
...|++++|+..|+++.... |+. . .+..+...+...|+++.|...++.+.+..... +..++..+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 88888888888888776632 321 1 12223455556666666666666666554221 455555666
Q ss_pred hHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVN 351 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 351 (605)
..|.+.|++++|.+.|++.. ..+..+|+.+...|...|++++|+..|+++.+. .| +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 66666666666666665543 223445555555566666666666666555543 22 2445555555555555555
Q ss_pred HHHHHHHHhH
Q 007396 352 EGLLCFDRMK 361 (605)
Q Consensus 352 ~a~~~~~~~~ 361 (605)
+|...|+++.
T Consensus 299 ~A~~~~~~al 308 (365)
T 4eqf_A 299 EAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-14 Score=151.14 Aligned_cols=393 Identities=10% Similarity=0.007 Sum_probs=283.7
Q ss_pred hHHHHHHHh--ccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--CCcccHHHHHHH-
Q 007396 32 QECLTILKT--CKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--PGAFDFNTLIRG- 105 (605)
Q Consensus 32 ~~~~~~l~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~~~~~~~~li~~- 105 (605)
..+..++.. -++.+.++.++..+++.- +.+...|..++ .++ +.|+++.|+.+|++... |++..|...+..
T Consensus 14 ~~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~---~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 14 DAWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYI---EAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444444443 356899999999998753 44566788888 889 99999999999999875 777778777753
Q ss_pred HHhCCCchHHHH----HHHHHHHC-CCCCC-cchHHHHHHHHHc---------cCChHHHHHHHHHHHHhCCCCchhHHH
Q 007396 106 FVKEVEFEEALF----LYNEMFER-GVEPD-NFTFPALFKACAK---------LQALKEGMQIHGHVFKVGFECDLFVQN 170 (605)
Q Consensus 106 ~~~~g~~~~A~~----l~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (605)
....|+.++|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+.+++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 345678877765 77776553 55554 3456666655443 688999999999998832121223444
Q ss_pred HHHHHH-------------HcCCCHHHHHHHHHh-------cC------CCC--------hhHHHHHHHHHHHC----CC
Q 007396 171 SLINMY-------------GKCEKVEFASAIFKQ-------MD------QKS--------VASWSAIIAAHASN----GL 212 (605)
Q Consensus 171 ~li~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li~~~~~~----g~ 212 (605)
...... .+.+++..|..++.. +. .|+ ...|...+.-.... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 332211 134567778776664 11 111 24666666443332 23
Q ss_pred h----hHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc-------cCChh-------hHHHHHHHHHHhcCCchHHHHhHH
Q 007396 213 W----SECLKLFGEMNNEKCWRPEESILVSVLSACTH-------LGALD-------LGKCTHGSLIRNISALNVIVETSL 274 (605)
Q Consensus 213 ~----~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 274 (605)
. ++++.+|++..... +-+...|......+.+ .|+++ .|..+++..++.-.+.+...+..+
T Consensus 250 ~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 2 47888999988753 4467777777777764 78887 899999999874345578899999
Q ss_pred HhHHHhcCCHHHHHHHHhccCC--C-Ce-eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH-HHhccC
Q 007396 275 IDMYVKCGCLEKGLCLFRMMAD--K-CQ-LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLS-ACSHAG 348 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~-a~~~~g 348 (605)
+..+.+.|++++|.++|+++.+ + +. ..|...+..+.+.|+.++|..+|++..+. .|+ ...|..... .+...|
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999998763 3 32 47999999999999999999999999874 333 233332222 233589
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHH
Q 007396 349 LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PIQQN--DVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999988542 335788999999999999999999999987 23332 448999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 007396 423 IAAKNLFQINSH 434 (605)
Q Consensus 423 ~~~~~~~~~~~~ 434 (605)
.+.+++.+..|.
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999998874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=149.27 Aligned_cols=257 Identities=10% Similarity=-0.062 Sum_probs=178.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2334444444455555555555555555555443 224445555555666
Q ss_pred hcCCHHHHHHHHhccCCC---CeeeHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADK---CQLTYSVM--------------IS-GLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVL 341 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (605)
..|++++|.+.|+++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 666666666665554311 11222222 22 3677889999999999998753 33667888888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 419 (605)
..+...|++++|..+++.+... .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998843 2345788999999999999999999999987 3344 4668999999999999999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHHcCChhHHHHHHHHH
Q 007396 420 IGEIAAKNLFQINSH------------HPSDYVLLSNMYARAQRWYDVAKIRTEM 462 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 462 (605)
+|...++++.+..|. ++..+..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998 6788999999999999999999988643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=177.96 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=132.2
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccC-------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMA-------DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
...-..+||+||++|+++|++++|.++|++|. .+|+++||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997753 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCC------HHHHHHHH
Q 007396 337 YVGVLSACSHAGL-VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQN------DVVWRSLL 409 (605)
Q Consensus 337 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~------~~~~~~ll 409 (605)
|+++|.++++.|+ .++|.++|++|. +.|+.||..+|++++....+.+-++.+.++...+ +|+ ..+...|.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHHH
Confidence 9999999999997 588999999999 5699999999999998888765555444443333 222 33444455
Q ss_pred HHHHhcC---------ChHHHHHHHHHHHhh
Q 007396 410 SASKVHH---------NLEIGEIAAKNLFQI 431 (605)
Q Consensus 410 ~a~~~~g---------~~~~a~~~~~~~~~~ 431 (605)
..|.+.+ ..++-..+|++-+.+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~~ 310 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHM 310 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHHHH
Confidence 5555544 246666777776543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=173.90 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=127.3
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh
Q 007396 162 FECDLFVQNSLINMYGKCEKVEFASAIFKQMD-------QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEES 234 (605)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 234 (605)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.| +.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Confidence 34445789999999999999999999997764 5899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhccCCh-hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-----CeeeHHHHHHH
Q 007396 235 ILVSVLSACTHLGAL-DLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-----CQLTYSVMISG 308 (605)
Q Consensus 235 t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~ 308 (605)
||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|.+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 999999999999985 789999999999999999999999999888876666665555544422 13344556666
Q ss_pred HHhcC
Q 007396 309 LAMHG 313 (605)
Q Consensus 309 ~~~~g 313 (605)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=142.86 Aligned_cols=252 Identities=13% Similarity=-0.022 Sum_probs=126.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHCCChh
Q 007396 138 FKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD---QKSVASWSAIIAAHASNGLWS 214 (605)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 214 (605)
...+...|++++|..+++.+++.... +...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|+++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHH
Confidence 33333444444444444444433221 33344444444444444444444444432 123445555555555666666
Q ss_pred HHHHHHHHHHhCCCCCCChhHHHHH--------------HH-HHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 215 ECLKLFGEMNNEKCWRPEESILVSV--------------LS-ACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 215 ~A~~~~~~m~~~g~~~p~~~t~~~l--------------l~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
+|+..|+++.... +.+...+..+ .. .+...|+++.|...+..+.+.. +.+..++..+...|.
T Consensus 107 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 107 AALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 6666666555432 1111122111 11 2455666666666666666554 224556666666666
Q ss_pred hcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007396 280 KCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
+.|++++|.+.|+++. ..+...|..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|...
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 6666666666666543 2234455666666666666666666666665532 12344555555666666666666666
Q ss_pred HHHhHHhcCCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 357 FDRMKLEYRIVP-----------TVQHYGCVVDLMGRAGMLGEALELIQS 395 (605)
Q Consensus 357 ~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (605)
|+.+..... .. +...|..+...+.+.|+.++|.+++++
T Consensus 263 ~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 263 LVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 665552110 00 234455555555555555555555543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-15 Score=143.39 Aligned_cols=247 Identities=10% Similarity=0.018 Sum_probs=202.1
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEE--SILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
|.-....|++++|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 4456678999999999987644 34543 3556678899999999998875543 2466888899999999999
Q ss_pred CCHHHHHHHHhccC----CC-CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007396 282 GCLEKGLCLFRMMA----DK-CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 282 g~~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 23 455677778899999999999999987 45677888899999999999999999
Q ss_pred HHHhHHhcCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 357 FDRMKLEYRIVPTVQH---YGCVVDLMGRAGMLGEALELIQSM-P-IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
|+.+.+. .|+... ...++..+...|++++|..+|+++ . .+.+...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999853 355422 223445555669999999999998 2 2346779999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCChhH-HHHHHHHHHhCC
Q 007396 432 NSHHPSDYVLLSNMYARAQRWYD-VAKIRTEMASKG 466 (605)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 466 (605)
+|+++.++..++..+...|++++ +.++++++.+.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578999888744
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-13 Score=146.07 Aligned_cols=366 Identities=11% Similarity=0.116 Sum_probs=265.5
Q ss_pred cChHHHHHHHHHHHHhC--CCCchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHH
Q 007396 42 KNLEEFKKVHAHVLKWG--FFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFL 118 (605)
Q Consensus 42 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 118 (605)
+.+.++.+++..++-.+ +.-+....|.|+ ... +. +........++... .....+...+...|.+++|..+
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi---~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLI---LTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHH---HHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhCCCHHHHHHH
Confidence 44666777777766221 112344555544 333 33 22333333333322 1234466777888999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh
Q 007396 119 YNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVA 198 (605)
Q Consensus 119 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 198 (605)
|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|.+.|.+. .|..
T Consensus 1072 YkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~s 1135 (1630)
T 1xi4_A 1072 FRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS 1135 (1630)
T ss_pred HHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChH
Confidence 98852 11112233332 668888888888755 35788889999999999999999999775 6778
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMY 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 278 (605)
.|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+..+.+.|
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 88889999999999999999998877643 34333445888889988887544432 2 34556667799999
Q ss_pred HhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
...|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999986 38999999999999999999999977 356889889999999999999888665
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhc--CChHHHHHHHHHHHhhCC-
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVH--HNLEIGEIAAKNLFQINS- 433 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~- 433 (605)
.+ ..++..+..++..|.+.|.+++|..+++.. +..|... .|.-|...+.+. ++..++.+.|..-....|
T Consensus 1275 ~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1275 HI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred hh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 43 356778889999999999999999999776 5555433 666666666544 566667777776555544
Q ss_pred ----CCCchHHHHHHHHHHcCChhHHHH
Q 007396 434 ----HHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 434 ----~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
.+...|.-++..|.+.|+|+.|..
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 466778899999999999999984
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-13 Score=146.32 Aligned_cols=339 Identities=12% Similarity=0.043 Sum_probs=242.7
Q ss_pred Ccc-CCCChHHHHHHHhhcCC-CC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC
Q 007396 74 ALS-HWGSMDYACSIFRQIDE-PG-----AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA 146 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 146 (605)
..| ..|.+.+|.++++++.- |+ ...-|.++.+..+. +..+..+...+... ....-+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCC
Confidence 555 66666666666666542 22 12344455555444 34444444444321 113335556667778
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 007396 147 LKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 147 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (605)
+++|.++|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 888888777641 1222223332 26677888888887663 4578889999999999999999998552
Q ss_pred CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHH
Q 007396 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMI 306 (605)
Q Consensus 227 g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 306 (605)
-|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 366778889999999999999999998877765 33334445888999998888644443 344556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..++...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 8889999999999999884 478888999999999999999887663 558888888888889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc--CChhHHHHHHH
Q 007396 387 GEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA--QRWYDVAKIRT 460 (605)
Q Consensus 387 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 460 (605)
..|......+ ..+...+..++..|...|.+++|+.+++..+.+++.+.+.|.-|..+|++. ++..++.++|.
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9988877654 334556668888999999999999999999999988888998888888875 45555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-14 Score=148.47 Aligned_cols=362 Identities=10% Similarity=-0.018 Sum_probs=238.4
Q ss_pred chhhccccccccCcc-CCCChHHHHHHHhhcC-----------CC-CcccHHHHHHHHHhCCCchHHHHHHHHHHHC---
Q 007396 62 NPFCASNLVATCALS-HWGSMDYACSIFRQID-----------EP-GAFDFNTLIRGFVKEVEFEEALFLYNEMFER--- 125 (605)
Q Consensus 62 ~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~-----------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 125 (605)
....||.|- .+| ..|+.++|++.|++.. .| ...+|+.+...|...|++++|...|++..+.
T Consensus 50 ~a~~yn~Lg---~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 50 KATMCNLLA---YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CCHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 355678777 888 9999999999997642 12 3567999999999999999999999887652
Q ss_pred --C-CCCC-cchHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHcCCCHHHHHHHHHhcC---
Q 007396 126 --G-VEPD-NFTFPALFKACAKL--QALKEGMQIHGHVFKVGFECDLFVQNSLINM---YGKCEKVEFASAIFKQMD--- 193 (605)
Q Consensus 126 --g-~~p~-~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~~~~m~--- 193 (605)
+ ..++ ..++.....++... +++++|...|+++++..+. +...+..+..+ +...++.++|.+.|++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1122 23455554455443 5789999999999988643 55555555554 345677778888777654
Q ss_pred CCChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHH
Q 007396 194 QKSVASWSAIIAAHAS----NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVI 269 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (605)
..+...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+ .+..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHH
Confidence 3456666666655544 467889999999988764 55677888999999999999999999999998763 3566
Q ss_pred HHhHHHhHHHhc-------------------CCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 270 VETSLIDMYVKC-------------------GCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 270 ~~~~li~~y~~~-------------------g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
++..+...|... +..+.|...|+... ..+...|..+...|...|++++|++.|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 777777666432 23566777777654 44678899999999999999999999999988
Q ss_pred cCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CH
Q 007396 328 EGLEPDDV--VYVGVLS-ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-ND 402 (605)
Q Consensus 328 ~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 402 (605)
....|... .+..+.. ...+.|+.++|...|.+.. .+.|+....... ...+.+++++. ...| +.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCH
Confidence 54433321 2223322 3457899999999999887 345554332222 23333444433 2234 45
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLL 442 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 442 (605)
.+|..|...+...|+.++|+..++++++++|.+|.+..-+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp THHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 6899999999999999999999999999998877665443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=128.97 Aligned_cols=225 Identities=7% Similarity=-0.012 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 345555666666666666666666655532 4444455555555555555555555554443321100
Q ss_pred HHhcCCHHHHHHHHhccCCCC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 007396 278 YVKCGCLEKGLCLFRMMADKC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 278 y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 353 (605)
++ ...|..+...|...|++++|...|++..+. .|+.. .+...|++++|
T Consensus 73 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKE 124 (258)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHH
Confidence 00 245556666667777777777777777663 34432 34455677888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 354 LLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
...++.+.. ..+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888877763 12224566777888888888888888888876 3333 4668888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 432 NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9998889999999999999999999999888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=129.70 Aligned_cols=241 Identities=10% Similarity=-0.075 Sum_probs=170.4
Q ss_pred CCChhHHHHHHHHHHhCCCC-C-CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHH
Q 007396 210 NGLWSECLKLFGEMNNEKCW-R-PEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKG 287 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~-~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 287 (605)
.|++++|+..|+++.+.... . .+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45666666666666654200 1 123455566666666677777777766666654 33566777778888888888888
Q ss_pred HHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 288 LCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 288 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
.+.|++.. ..+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 88887665 235677888888889999999999999998874 455555555555667779999999999877743
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 365 RIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++.+.+|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 3677777888889999998876 33332 4688889999999999999999999999999876544
Q ss_pred HHHHHHHHHHcCChhHHHHHH
Q 007396 439 YVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 66778889998887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-13 Score=125.85 Aligned_cols=234 Identities=9% Similarity=-0.021 Sum_probs=158.9
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCCC----hhHHH
Q 007396 165 DLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKC-WRPE----ESILV 237 (605)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~----~~t~~ 237 (605)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++...... ..|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788899999999999999999987642 6778999999999999999999999999876420 1112 34455
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHH
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKE 317 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 317 (605)
.+...+...|+++.|...+..+.+.... ...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------------------------------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch----------------------------------------hHHHHHHhHHHH
Confidence 5555555555555555555555554321 123444556666
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 318 ALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 318 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
|...++++... .|+ ...+..+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|.+.+++.
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666652 332 245556666677777777777777777632 1234566777777777777777777777766
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCCchHHHH
Q 007396 397 -PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQIN------SHHPSDYVLL 442 (605)
Q Consensus 397 -~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l 442 (605)
...| +...|..+..++...|+.++|...++++.+.. |.+...+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 3334 35577778888888888888888888888887 6554444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=123.67 Aligned_cols=194 Identities=10% Similarity=-0.033 Sum_probs=148.7
Q ss_pred CchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007396 265 ALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGV 340 (605)
Q Consensus 265 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 340 (605)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 445667777888888888888888888876533 4567888888888899999999999888874 44 44677778
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHH
Q 007396 341 LSACSHA-----------GLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRS 407 (605)
Q Consensus 341 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 407 (605)
...+... |++++|...|++..+. .| +...+..+...|...|++++|.+.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999998842 34 4678888999999999999999999887 22267789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=129.65 Aligned_cols=182 Identities=6% Similarity=-0.206 Sum_probs=97.2
Q ss_pred Ccc-CCCChHHHHHHHhhcCCC-------CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC
Q 007396 74 ALS-HWGSMDYACSIFRQIDEP-------GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQ 145 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 145 (605)
..+ ..|++++|...|+++.+. +...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 445 667777777777665431 23456666666666677777777776666642 223455666666666666
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 146 ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
++++|...++.+++.... +..++..+..+|.+.|++++|.+.|+++.+ |+...+...+..+...|++++|+..|++.
T Consensus 92 ~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp CHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666666666666665422 455555566666666666666666655532 22222223333334445566666666555
Q ss_pred HhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHH
Q 007396 224 NNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLI 260 (605)
Q Consensus 224 ~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 260 (605)
.... +++...+. ++..+...++.+.|...+..+.
T Consensus 171 ~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 171 FEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred HhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 4432 22322222 3333344444444444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-12 Score=130.62 Aligned_cols=372 Identities=9% Similarity=-0.031 Sum_probs=200.1
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCchhhccccccccCcc-CCCCh---HHHHHHHhhcCCCCcccHHHHHHHHHhCC--
Q 007396 37 ILKTCKNLEEFKKVHAHVLKWGFFWNPFCASNLVATCALS-HWGSM---DYACSIFRQIDEPGAFDFNTLIRGFVKEV-- 110 (605)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 110 (605)
..-.-++.+.|.+++..+.+.| ++..+..|- .+| ..|+. ++|...|++..+.+...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg---~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLA---DIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHH---HHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3334456788889999888876 344445555 778 88888 89999999887777778888877566655
Q ss_pred ---CchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC----
Q 007396 111 ---EFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALK---EGMQIHGHVFKVGFECDLFVQNSLINMYGKCE---- 180 (605)
Q Consensus 111 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 180 (605)
++++|+..|++..+.|. ...+..+...+...+..+ .+.+.+....+.| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67899999999988763 235666666666554433 3445555555555 3556667777787777
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHCC---ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc----CChhhHH
Q 007396 181 KVEFASAIFKQMDQKSVASWSAIIAAHASNG---LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL----GALDLGK 253 (605)
Q Consensus 181 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~----~~~~~a~ 253 (605)
..+++..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..+...+... ++.++|.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4566667777777777778888888888888 8888888888888877 55555444454444433 4555555
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD 333 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (605)
..++... .| +...+..|..+|.. ....++.++|+..|++..+.| +
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~----------------------------~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYD----------------------------FPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHH----------------------------SGGGCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHHHCC---C
Confidence 5555554 22 23333333333110 023455566666666655544 3
Q ss_pred HHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHH
Q 007396 334 DVVYVGVLSACSHAG-----LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVV 404 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~ 404 (605)
...+..|...|. .| +.++|..+|+... .-+...+..|..+|.. ..++++|...|++.-..-+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 344444444444 33 6666666665543 2234445555555544 2366666666666521222334
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 405 WRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 405 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
...|...|.. ..|.++|...+++..+.++.........+......++.++|.++.++-+
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444444432 3467777777777777665322222112211122334555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-13 Score=126.62 Aligned_cols=241 Identities=8% Similarity=-0.027 Sum_probs=131.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCC--hhHHHHHHHHH
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPE--ESILVSVLSAC 243 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~a~ 243 (605)
.......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++....+ -.|+ ...+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHH
Confidence 34455666677777777777766542 234466666677777777777777777766532 1222 12355555566
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALS 320 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 320 (605)
...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+. +...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554 223445555555666666666666655555432 22333333312222234555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHC-
Q 007396 321 IFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM---LGEALELIQSM- 396 (605)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m- 396 (605)
.|++..+. .|+ +...+..+...+...|+ .++|...+++.
T Consensus 164 ~~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 55444442 222 13333334444444444 33344444333
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 397 ---PIQQN------DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 397 ---~~~p~------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
...|+ ..+|..+...+...|++++|...++++++++|+++.....+......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 11122 23667777788888999999999999999999887766655554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=117.03 Aligned_cols=205 Identities=8% Similarity=-0.069 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHh
Q 007396 197 VASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLID 276 (605)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 276 (605)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|.+.++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 3455555566666666666666666655432 2233333333333344444444444443333332
Q ss_pred HHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 007396 277 MYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLL 355 (605)
Q Consensus 277 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 355 (605)
..+...|..+...|...|++++|.+.|+++.+.+..|+ ...+..+...+...|++++|..
T Consensus 102 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 102 -------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 11223344444444455555555555555544223332 2344445555555666666666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 356 CFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 356 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|...++++.+..|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66555531 1223455555566666666666666666554 2222 334555555566666666666666666666666
Q ss_pred CCCc
Q 007396 434 HHPS 437 (605)
Q Consensus 434 ~~~~ 437 (605)
+++.
T Consensus 241 ~~~~ 244 (252)
T 2ho1_A 241 GSLE 244 (252)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 5543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-12 Score=117.49 Aligned_cols=192 Identities=14% Similarity=0.062 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
..|..+...+.+.|++++|+..|++..... +.+...+..+..++.+.|++++|...++.+++.. +.+...+..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 344444445555555555555555544432 2233444444444444455555555444444443 2234444455555
Q ss_pred HHhc-----------CCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 278 YVKC-----------GCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 278 y~~~-----------g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
|.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5554 55555655555443 1234455555556666666666666666665544 455555556666
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
+...|++++|...|+...+. -+.+...+..+...+.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666665531 1223455555555666666666666555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-11 Score=114.74 Aligned_cols=197 Identities=12% Similarity=0.010 Sum_probs=141.2
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.++++.+.. ..+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566666777777777777777776554 2345567777777777788888888777777642 2345667777777
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007396 344 CSHA-GLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 344 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 419 (605)
+... |++++|..+|+.+.. .+..|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7778 888888888887774 223333 566777777788888888888887776 3333 3557777777888888888
Q ss_pred HHHHHHHHHHhhCC-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 420 IGEIAAKNLFQINS-HHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 420 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|...++++.+..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 77777777777888888888888888877653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-12 Score=118.10 Aligned_cols=197 Identities=9% Similarity=-0.068 Sum_probs=167.9
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC 344 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 344 (605)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5667777888888888888888887764 3356678888889999999999999999998753 23567888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007396 345 SHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 345 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 421 (605)
...|++++|..+|+.+.. .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999984 33445 4678888999999999999999999987 3334 467889999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 422 EIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...++++.+..|.+...+..++.+|...|++++|.++++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-12 Score=129.12 Aligned_cols=343 Identities=9% Similarity=-0.041 Sum_probs=220.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL---KEGMQIHGHVFKVGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (605)
+...+.+.|++++|+.+|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566777889999999999988776 333444555555666777 8888888888755 44556666664555
Q ss_pred CC-----CHHHHHHHHHhcCCC-ChhHHHHHHHHHHHCCChh---HHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCCh
Q 007396 179 CE-----KVEFASAIFKQMDQK-SVASWSAIIAAHASNGLWS---ECLKLFGEMNNEKCWRPEESILVSVLSACTHLGAL 249 (605)
Q Consensus 179 ~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~ 249 (605)
.| +.++|.+.|++..++ +...+..+...|...+... ++++.+......| +......+...+...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCc
Confidence 54 778898888877643 4557788888888776544 3455555555444 344555666666677766
Q ss_pred hhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC---CHHHHHHHHhccCCCC---eeeHHHHHHHHHhc----CCHHHHH
Q 007396 250 DLGKCTHGSLIRNISALNVIVETSLIDMYVKCG---CLEKGLCLFRMMADKC---QLTYSVMISGLAMH----GQGKEAL 319 (605)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~----g~~~~A~ 319 (605)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+.+ ...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 665555444444333334447888888898888 8888999998775433 22335566666544 6889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHH
Q 007396 320 SIFSEMLREGLEPDDVVYVGVLSA-C--SHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-----MLGEALE 391 (605)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 391 (605)
..|++.. .| +...+..+... + ...++.++|..+|++... .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999887 33 33444455544 3 458899999999998873 34 5666777777776 45 8999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHH
Q 007396 392 LIQSMPIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMA 463 (605)
Q Consensus 392 ~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 463 (605)
.|++.- .-+...+..|...|.. ..|.++|...+++..+.+ ++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999887 5566677777766655 348899999999887754 46678888888875 458889999999888
Q ss_pred hCCC
Q 007396 464 SKGL 467 (605)
Q Consensus 464 ~~~~ 467 (605)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 8775
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-12 Score=127.00 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCC-hhHHHHHHHHHHhCCCCCCChhHHHHHHHH
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGL-WSECLKLFGEMNNEKCWRPEESILVSVLSA 242 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a 242 (605)
.+|+.+...|.+.|++++|.+.|++..+ .+..+|+.+...+...|+ +++|+..|++...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~----------------- 160 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE----------------- 160 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----------------
Confidence 3445555555555555555555554431 234455555555555554 5555555555554
Q ss_pred HhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHH
Q 007396 243 CTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
.. +.+..+|+.+..+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+
T Consensus 161 -------------------l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 161 -------------------EQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp -------------------HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred -------------------HC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 33 2234445555555555555555555555443 223455666666666666677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcC--CHHHHH
Q 007396 320 SIFSEMLREGLEPDDVVYVGVLSACSH-AGLVNEG-----LLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAG--MLGEAL 390 (605)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~ 390 (605)
..|+++++... -+...|..+..++.. .|..++| ...|+.... +.| +...|..+..+|.+.| ++++|.
T Consensus 221 ~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 221 QYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 77777666321 134566666666666 4443555 466666653 234 3566777777777777 577888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HhhCCCCCchHHHHHHHHHH
Q 007396 391 ELIQSMPIQQN-DVVWRSLLSASKVHH--------N-LEIGEIAAKNL-FQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 391 ~~~~~m~~~p~-~~~~~~ll~a~~~~g--------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 448 (605)
+.++++...|+ ...+..+...+...| + .++|+.+++++ .+++|.....|..++..+..
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 87777744454 457777777777653 2 58899999999 88999888787777766543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-12 Score=131.78 Aligned_cols=197 Identities=10% Similarity=-0.040 Sum_probs=122.9
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCC---------CeeeHHHHHHHHHhcCC-----------------HHHHHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADK---------CQLTYSVMISGLAMHGQ-----------------GKEALSIF 322 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 322 (605)
.++..+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 34444555555555555555555443211 12345555555566666 66666666
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 007396 323 SEMLRE----GLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELI 393 (605)
Q Consensus 323 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 393 (605)
++..+. +..|. ..++..+...+...|++++|..+|++......-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554331 11111 235666667777778888887777776532111112 236677777888888888888877
Q ss_pred HHC-CC---CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCchHHHHHHHHHHcCChhHHHHHH
Q 007396 394 QSM-PI---QQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 394 ~~m-~~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
++. .. ..+ ..++..+...+...|++++|...++++.+..+. ....+..++.+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 765 11 111 346777788888889999999998888876433 2347788899999999999999999
Q ss_pred HHHHhC
Q 007396 460 TEMASK 465 (605)
Q Consensus 460 ~~m~~~ 465 (605)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-12 Score=119.51 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=65.3
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
.|..+...|...|++++|...++++.+.. ..+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444455555555555444422 123334444444555555555555555554421 112344444455555
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVL 441 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 441 (605)
.+.|++++|.+.++++ ...| +..+|..+..++...|+.++|...++++.+.+|+++..+..
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 5555555555555444 1112 23345555555555555555555555555555555444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-12 Score=128.51 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=122.4
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCC--------------------HHHHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQ--------------------GKEAL 319 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 319 (605)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3444555555555555555555554331 11 2245555566666666 66666
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHH
Q 007396 320 SIFSEMLRE----GLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEAL 390 (605)
Q Consensus 320 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 390 (605)
..+++.... +..|. ..++..+...+...|++++|...|++...-..-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666655431 11111 235666667777778888888777776532111122 236677777788888888888
Q ss_pred HHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHHcCChhHHH
Q 007396 391 ELIQSM----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYVLLSNMYARAQRWYDVA 456 (605)
Q Consensus 391 ~~~~~m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~ 456 (605)
+.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 877765 11112 3467777778888888888888888887764332 446778888888888888888
Q ss_pred HHHHHHHh
Q 007396 457 KIRTEMAS 464 (605)
Q Consensus 457 ~~~~~m~~ 464 (605)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=112.27 Aligned_cols=210 Identities=9% Similarity=-0.063 Sum_probs=136.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+...|..+...+...|++++|+..|+++.... +.+...+..+...+...|+++.|...++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------ 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------
Confidence 34456666667777777777777777666543 2234444444444444444444444444444332
Q ss_pred hHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMH-GQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 353 (605)
..+...|..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|
T Consensus 73 --------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 73 --------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp --------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 22334555666667777 777777777777766333344 35666677777788888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 354 LLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ--NDVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|+.+.+...++.+.+
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888877742 1234677778888888888888888888776 2223 455677777777888999999999999888
Q ss_pred hCCCCCchHHH
Q 007396 431 INSHHPSDYVL 441 (605)
Q Consensus 431 ~~~~~~~~~~~ 441 (605)
..|+++.....
T Consensus 211 ~~p~~~~~~~~ 221 (225)
T 2vq2_A 211 NFPYSEELQTV 221 (225)
T ss_dssp HCTTCHHHHHH
T ss_pred hCCCCHHHHHH
Confidence 88887665443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-11 Score=114.33 Aligned_cols=228 Identities=9% Similarity=-0.059 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVE 271 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 271 (605)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566666677777777777777777766533 23344444445555 555555555555555543 33444
Q ss_pred hHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c
Q 007396 272 TSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSH----A 347 (605)
Q Consensus 272 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~ 347 (605)
..+..+|... ....+++++|+..|++..+.+ +...+..+...+.. .
T Consensus 78 ~~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 78 HLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc
Confidence 4444444440 000455555555555554432 34444445555555 5
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLE 419 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~ 419 (605)
++.++|..+|++..+ .+ +...+..+...|.+ .+++++|.+.|++.-...+...+..+...+.. .++.+
T Consensus 128 ~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 128 RDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp CCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred cCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 555555555555552 12 33444445555554 55566666655554111234455555556666 66666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 466 (605)
+|...+++..+.+| +..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 204 ~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 204 EALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666666666654 4556666666666 666666766666666544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-11 Score=113.62 Aligned_cols=229 Identities=10% Similarity=-0.093 Sum_probs=161.5
Q ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCCChhHHHHH
Q 007396 165 DLFVQNSLINMYGKCEKVEFASAIFKQMDQK-SVASWSAIIAAHAS----NGLWSECLKLFGEMNNEKCWRPEESILVSV 239 (605)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 239 (605)
+...+..+...|.+.|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence 5677888899999999999999999987654 56788889999999 999999999999998865 66778888
Q ss_pred HHHHhc----cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCH
Q 007396 240 LSACTH----LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQG 315 (605)
Q Consensus 240 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 315 (605)
...+.. .+++++|...++...+.+ +...+..+..+|.+.. ...+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCH
Confidence 888888 888999998888888765 4555555555555500 004444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHH
Q 007396 316 KEALSIFSEMLREGLEPDDVVYVGVLSACSH----AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLG 387 (605)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 387 (605)
++|+..|++..+.+ +...+..+...+.. .++.++|..+|+...+. .+...+..+...|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555554433 33444445555554 66666666666666531 234555666666666 67777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCC
Q 007396 388 EALELIQSM-PIQQNDVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~ 435 (605)
+|.+.|++. ... +...+..+...+.. .++.++|...+++..+.+|++
T Consensus 204 ~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 204 EALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777665 222 25566677777777 788888888888888888753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=119.11 Aligned_cols=198 Identities=10% Similarity=0.055 Sum_probs=152.9
Q ss_pred chHHHHhHHHhHHHhcCCHHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 266 LNVIVETSLIDMYVKCGCLEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 266 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. ..+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677777888888888888888887653 245678888889999999999999999998753 335678888889
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|..+|+++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999853 2346788889999999999999999999987 3334 56688899999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|+..++++.+..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-12 Score=122.66 Aligned_cols=261 Identities=10% Similarity=0.005 Sum_probs=167.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHh----cC-CchHHHHhH
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPE----ESILVSVLSACTHLGALDLGKCTHGSLIRN----IS-ALNVIVETS 273 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 273 (605)
....+...|++++|+..|+++.... +.+ ...+..+...+...|+++.|...+..+.+. +. +....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555555555555555555432 112 133444455555555555555555544422 11 112445566
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQ--------------------GKEALSIFSE 324 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 324 (605)
+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66667777777777766665431 11 2256666677777777 7777777776
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 325 MLRE----GLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQS 395 (605)
Q Consensus 325 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (605)
.... +..|. ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 11111 236667777888889999999888887632111122 33677888888999999999998877
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHHcCChhHHHHHHHH
Q 007396 396 M----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYVLLSNMYARAQRWYDVAKIRTE 461 (605)
Q Consensus 396 m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (605)
. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 3477778888999999999999999988775432 34778899999999999999999999
Q ss_pred HHhC
Q 007396 462 MASK 465 (605)
Q Consensus 462 m~~~ 465 (605)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-11 Score=114.98 Aligned_cols=226 Identities=10% Similarity=-0.022 Sum_probs=177.1
Q ss_pred cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CC----hhHHHHHH
Q 007396 131 NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KS----VASWSAII 204 (605)
Q Consensus 131 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li 204 (605)
...+......+...|++++|...++.+++..+. +...+..+...|.+.|++++|.+.|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 345566777888999999999999999988643 566888899999999999999999998764 22 23588999
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH-hHHHhcCC
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI-DMYVKCGC 283 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 283 (605)
..|...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+. ..|. .++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998864 4567889999999999999999999999998874 44677777787 5555 469
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCCH
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQ---GKEALSIFSEMLREG-LEPDD------VVYVGVLSACSHAGLV 350 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~ 350 (605)
+++|.+.|+++. ..+...|..+...+...|+ +++|...|++..+.. -.|+. ..|..+...+...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999876 2345667777778888887 778888888877632 12331 3555566667777777
Q ss_pred HHHHHHHHHhH
Q 007396 351 NEGLLCFDRMK 361 (605)
Q Consensus 351 ~~a~~~~~~~~ 361 (605)
++|..+|++..
T Consensus 238 ~~A~~~~~~al 248 (272)
T 3u4t_A 238 VKADAAWKNIL 248 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777766
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=125.80 Aligned_cols=153 Identities=13% Similarity=0.030 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGL-EPD----DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQH 372 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 372 (605)
|..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|..+++.......-.++ ...
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 44444445555555555555554432100 011 124555556666666666666666655421111111 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCch
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPSD 438 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 438 (605)
+..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++..++.+. ...+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 349 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 666777777777777777777665 11112 346777778888889999999888888776322 3456
Q ss_pred HHHHHHHHHHcCChhH
Q 007396 439 YVLLSNMYARAQRWYD 454 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~ 454 (605)
+..++.+|...|+...
T Consensus 350 ~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 350 RLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhhHhHH
Confidence 7788889988887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=122.89 Aligned_cols=217 Identities=11% Similarity=0.030 Sum_probs=171.1
Q ss_pred hccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC-HHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHH
Q 007396 244 THLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC-LEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 319 (605)
...|+++.|...++.+++.. +.+..+|+.+...|.+.|+ +++|+..|++.. ..+...|+.+...+...|++++|+
T Consensus 108 ~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 33344444444444444333 3356778888888999996 999999999876 346788999999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHH-----HHH
Q 007396 320 SIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR-AGMLGEA-----LEL 392 (605)
Q Consensus 320 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A-----~~~ 392 (605)
..|+++.+. .| +...|..+..++...|++++|...|+++.+. -+-+...|+.+..+|.+ .|..++| ++.
T Consensus 187 ~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 187 EFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 999999984 44 5678888999999999999999999999842 12357889999999999 6665777 477
Q ss_pred HHHC-CCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC---------ChhHHHHHH
Q 007396 393 IQSM-PIQQN-DVVWRSLLSASKVHH--NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ---------RWYDVAKIR 459 (605)
Q Consensus 393 ~~~m-~~~p~-~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~ 459 (605)
+++. .+.|+ ...|..+...+...| +.++|...++++ +.+|+++..+..|+.+|.+.| ..++|.+++
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 7665 45564 568999988888888 689999999998 888999999999999999875 358999999
Q ss_pred HHH-HhCC
Q 007396 460 TEM-ASKG 466 (605)
Q Consensus 460 ~~m-~~~~ 466 (605)
+++ .+.+
T Consensus 342 ~~l~~~~D 349 (382)
T 2h6f_A 342 EILAKEKD 349 (382)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 998 5543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=125.62 Aligned_cols=132 Identities=13% Similarity=-0.021 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREGL-EPD----DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP----TVQH 372 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~ 372 (605)
|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+|++......-.. ....
T Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444444555555544444433100 011 12455556666666666666666665543211111 1355
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
+..+...|.+.|++++|.+.+++. +..+. ..++..+...+...|+.++|...+++..++.+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 666777777777777777777665 11111 23677778888899999999999999888765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-11 Score=118.78 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DV 403 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~ 403 (605)
++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|.+.+++. +..+. ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444555555555555555555554421111111 345555666666666666666666554 11111 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566677777788888888888888777654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.4e-12 Score=129.59 Aligned_cols=190 Identities=8% Similarity=-0.067 Sum_probs=143.7
Q ss_pred hHHHHhHHHhHHHhcCCH-HHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCL-EKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLS 342 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~-~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 342 (605)
+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|...|++..+ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 344444444445555555 55555554432 22344666677777777777888888887776 4577777777778
Q ss_pred HHhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHHHC-CCCC----
Q 007396 343 ACSHA---------GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA--------GMLGEALELIQSM-PIQQ---- 400 (605)
Q Consensus 343 a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p---- 400 (605)
.+... |++++|...|++..+. -+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8888888888888742 123467788888888888 8899999999887 4455
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHH
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRT 460 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (605)
+...|..+..++...|++++|...++++.+++|.++..+..+..++...|++++|.+.+.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999999999999999999999987553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=103.93 Aligned_cols=164 Identities=11% Similarity=0.074 Sum_probs=126.0
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007396 299 QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVV 377 (605)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 377 (605)
+..|..+...|.+.|++++|++.|++..+. .| +..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 345666777777777777777777777763 33 3456777777777888888888888777632 223456666677
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (605)
..+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7778888888888888776 3334 4557888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007396 456 AKIRTEMASKG 466 (605)
Q Consensus 456 ~~~~~~m~~~~ 466 (605)
.+.+++..+.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-10 Score=108.99 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHhCCCCCCChhHHHHHHHHHh-------ccCCh-------hhHHHHHHHHHHhcCCchHHHHhHHHhHHH
Q 007396 214 SECLKLFGEMNNEKCWRPEESILVSVLSACT-------HLGAL-------DLGKCTHGSLIRNISALNVIVETSLIDMYV 279 (605)
Q Consensus 214 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 279 (605)
++|+..|++..... +-+...|......+. +.|++ ++|..+++..++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666666666532 334445555544443 23554 666666666666312335566777777777
Q ss_pred hcCCHHHHHHHHhccCCC---Cee-eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHH
Q 007396 280 KCGCLEKGLCLFRMMADK---CQL-TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC-SHAGLVNEGL 354 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~---~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 354 (605)
+.|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777765532 232 677777777777888888888887776432 2233343332222 2357888888
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007396 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-P---IQQ--NDVVWRSLLSASKVHHNLEIGEIAAKNL 428 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 428 (605)
.+|+...+.. +-+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888777432 235677777777888888888888888776 2 244 2457777777777888888888888888
Q ss_pred HhhCCCCC
Q 007396 429 FQINSHHP 436 (605)
Q Consensus 429 ~~~~~~~~ 436 (605)
.+..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88877654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=118.24 Aligned_cols=241 Identities=9% Similarity=0.003 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhC-------CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh------c-
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNE-------KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN------I- 263 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~- 263 (605)
.+|..+...|...|++++|+.+|+++... . .+.....+..+...+...|+++.|...+..+.+. +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35566666666666666666666666542 1 1222334445555555556666666555555543 1
Q ss_pred CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC-------C----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 007396 264 SALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD-------K----CQLTYSVMISGLAMHGQGKEALSIFSEMLRE---- 328 (605)
Q Consensus 264 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 328 (605)
.+....++..+...|...|++++|.+.|++..+ + ....|..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 122345566666677777777777666655431 1 1223444555555555555555555555432
Q ss_pred --CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCC
Q 007396 329 --GLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEY------RIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQ 399 (605)
Q Consensus 329 --g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (605)
+..|+. .++..+...+...|++++|..+|+.+.... ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 112211 234444444555555555555555444210 00000000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 400 QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
....+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222222334445555566666666666666667777788888888888888887777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-10 Score=116.19 Aligned_cols=159 Identities=8% Similarity=0.030 Sum_probs=76.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHhcC------CchHHHHh
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPE----ESILVSVLSACTHLGALDLGKCTHGSLIRNIS------ALNVIVET 272 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 272 (605)
....+...|++++|+..|++....-.-.+| ..++..+...+...|+++.|...+....+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666666666666666543100122 23444445555555555555555555443210 11123455
Q ss_pred HHHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 007396 273 SLIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPD-DVVYV 338 (605)
Q Consensus 273 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 338 (605)
.+...|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555666666666555554321 11 124444555555555555555555555431 11122 23444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 007396 339 GVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 339 ~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
.+...+...|++++|..++++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.5e-11 Score=118.57 Aligned_cols=225 Identities=8% Similarity=-0.062 Sum_probs=171.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHHh----cCCc-hHHHHhHHHhHHHhcCCHHHHHHHHhccCC-----CC-----eeeHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRN----ISAL-NVIVETSLIDMYVKCGCLEKGLCLFRMMAD-----KC-----QLTYS 303 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~-----~~~~~ 303 (605)
....+...|+++.|...+..+.+. +.++ ...++..+...|...|++++|...|++..+ .+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667899999999999999864 2122 457788999999999999999998887641 11 34788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCChHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGL-EPDD----VVYVGVLSACSHAGLVNEGLLCFDRMKLE---YRI-VPTVQHYG 374 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~ 374 (605)
.+...|...|++++|+..|++..+... .++. .++..+...+...|++++|...|++...- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998875311 1222 47888889999999999999999988741 122 23357788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CC-----CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PI-----QQN-DVVWRSLLSASKVHHN---LEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 11 122 2245667777888888 67777777665 112334557788999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 007396 445 MYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~ 464 (605)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-09 Score=110.91 Aligned_cols=215 Identities=9% Similarity=-0.023 Sum_probs=114.9
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHH-HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 216 CLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGK-CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 216 A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
+..+|++.... .+-+...|.....-+.+.|+.+.|. .+++..+... +.+...+-..+..+-+.|+++.|.++|+.+
T Consensus 328 v~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 328 MTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555443 2334455555555555556666664 6666666532 344555556666666666666666666655
Q ss_pred CC-------------CC------------eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcc
Q 007396 295 AD-------------KC------------QLTYSVMISGLAMHGQGKEALSIFSEMLRE-GL-EPDDVVYVGVLSACSHA 347 (605)
Q Consensus 295 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~ 347 (605)
.. |+ ...|...+....+.|..+.|..+|.+..+. +. .+......+.+.- ...
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhC
Confidence 42 11 124555555555666666666666666654 11 1111121122221 112
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC----CHHHHHHHHHHHHhcCChHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ----NDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34666666666666432 233444556666666666666666666664 2222 1235666666666666666666
Q ss_pred HHHHHHHhhCCCCC
Q 007396 423 IAAKNLFQINSHHP 436 (605)
Q Consensus 423 ~~~~~~~~~~~~~~ 436 (605)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 66666666666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=103.50 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=136.4
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 343 (605)
+..+|..+...|.+.|++++|++.|++.. ..++.+|..+...|.+.|++++|+..+.+..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888888999999999999888765 3356788888889999999999999999888753 2245566677778
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIG 421 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 421 (605)
+...++.+.+...+...... .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988742 2345778888999999999999999999887 4455 456899999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 007396 422 EIAAKNLFQINSHH 435 (605)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (605)
+..++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999998864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=9e-10 Score=107.70 Aligned_cols=215 Identities=10% Similarity=0.067 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 007396 113 EEALFLYNEMFERGVEPDNFTFPALFKACA-------KLQAL-------KEGMQIHGHVFKVGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 113 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (605)
++|+.+|++..... +-+...|......+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 223335555554443 23554 6666666666652112244566666666666
Q ss_pred CCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHH-hccCChhhHH
Q 007396 179 CEKVEFASAIFKQMDQ--K-SVA-SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSAC-THLGALDLGK 253 (605)
Q Consensus 179 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~-~~~~~~~~a~ 253 (605)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666543 2 222 56666666666666666666666665533 22222332221111 1134444444
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 007396 254 CTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG-LEP 332 (605)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 332 (605)
.+|+..++.. ..+...|..++..+.+.|+.++|..+|++..... +.|
T Consensus 190 ~~~~~al~~~--------------------------------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 190 KIFELGLKKY--------------------------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHHHHHHH--------------------------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHhC--------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 4444444432 1233445555555555555555555555555532 233
Q ss_pred C--HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 007396 333 D--DVVYVGVLSACSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 333 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 362 (605)
+ ...|..++......|+.++|..+++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33455555555555666666666665553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-09 Score=104.66 Aligned_cols=259 Identities=12% Similarity=0.006 Sum_probs=164.5
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCChh----HHHHHHHHHhccCChhhHHHHHHHHHHhcC---Cc--hHHHHhHHH
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPEES----ILVSVLSACTHLGALDLGKCTHGSLIRNIS---AL--NVIVETSLI 275 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li 275 (605)
..+...|++++|...+++..... -..+.. .+..+...+...|+++.|...+....+... .+ ....+..+.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455666666666666655532 111111 233444455556666666666666554211 11 123345666
Q ss_pred hHHHhcCCHHHHHHHHhccCC-------C----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMAD-------K----CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE--P--DDVVYVGV 340 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l 340 (605)
..|...|++++|.+.+++... + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777778888888777765431 1 1234556677788888888888888887754221 1 12456677
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHHC-CCCCC-----HHHHHHHH
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYG-----CVVDLMGRAGMLGEALELIQSM-PIQQN-----DVVWRSLL 409 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll 409 (605)
...+...|++++|..++++...-..-......+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7778888999999999888764211111111121 2334577899999999999887 22221 22466777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHH------PSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..+...|+.++|...++++.+..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78889999999999999887654321 13667788899999999999999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-10 Score=122.52 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=118.5
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVV 377 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 377 (605)
.+|+.+...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|...|++..+ +.| +...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 3556666666666777777777776665 3443 45666677777777777777777777663 234 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHH
Q 007396 378 DLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDV 455 (605)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 455 (605)
.+|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777778888887777776 44554 458888888888889999999999999999998888888899999999999888
Q ss_pred HHHHHHHHh
Q 007396 456 AKIRTEMAS 464 (605)
Q Consensus 456 ~~~~~~m~~ 464 (605)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=6.4e-09 Score=111.42 Aligned_cols=411 Identities=8% Similarity=-0.011 Sum_probs=276.7
Q ss_pred HHHHHHHhCCCCchhhccccccccCcc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCC---chHHHHHHHHH
Q 007396 50 VHAHVLKWGFFWNPFCASNLVATCALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVE---FEEALFLYNEM 122 (605)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~l~~~m 122 (605)
.+...++.. +.|...|..++ ... +.+.++.|+.+|+++.. | ....|..-+..-.+.++ ++.+..+|++.
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi---~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLL---KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCCHHHHHHHH---HHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334444443 35788889999 888 88999999999999865 3 44568888888888888 99999999999
Q ss_pred HHCC-CCCCcchHHHHHHHHHccCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHc---------CCC
Q 007396 123 FERG-VEPDNFTFPALFKACAKLQAL--------KEGMQIHGHVFKV-GF-ECD-LFVQNSLINMYGK---------CEK 181 (605)
Q Consensus 123 ~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 181 (605)
+... ..|+...|..-+.-..+.++. +...++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8763 137777777766655554443 3455788877654 66 554 5688888776543 345
Q ss_pred HHHHHHHHHhcCC-C--Ch-hHHH---HHHHHHH----------HCCChhHHHHHHHHHHhC--CCCC------------
Q 007396 182 VEFASAIFKQMDQ-K--SV-ASWS---AIIAAHA----------SNGLWSECLKLFGEMNNE--KCWR------------ 230 (605)
Q Consensus 182 ~~~A~~~~~~m~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~~------------ 230 (605)
++.++++|++... | +. ..|. .+..... ...+++.|...+.++... + +.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~-l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG-LKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHh-Hhhccccccccchh
Confidence 7889999998764 2 11 2332 2222110 011233444455443211 1 11
Q ss_pred ---C--C---h---hHHHHHHHHHhccC-------ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH-HHH
Q 007396 231 ---P--E---E---SILVSVLSACTHLG-------ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL-CLF 291 (605)
Q Consensus 231 ---p--~---~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~f 291 (605)
| + . ..|...+.---..+ ..+....+|++++..- +.+..+|-..+..+.+.|+.++|. ++|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 0 0 12222332222211 1223456777777654 447788888888888999999996 999
Q ss_pred hccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhcc
Q 007396 292 RMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGL---------EPD------------DVVYVGVLSACSHA 347 (605)
Q Consensus 292 ~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~ 347 (605)
++.. ..+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 8765 23455677788888899999999999999986410 142 23577777777788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-MLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIA 424 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 424 (605)
|.++.|..+|....+.. -.+....|...+.+-.+.| +.+.|..+|+.. ...-+...|...+......|+.+.|..+
T Consensus 448 ~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999998531 1123445554444444554 589999999887 2223556788888888889999999999
Q ss_pred HHHHHhhCCC---CCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 425 AKNLFQINSH---HPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 425 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
|+++.+..|+ ....+...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999998873 345677788888899999999999999988653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=97.63 Aligned_cols=160 Identities=10% Similarity=-0.053 Sum_probs=97.2
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
..+..+...|...|++++|.+.|+++.+. +...|..+...+...|++++|...++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------
Confidence 44555666666666666666666665532 23344445555555555555555555554431
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
+.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|++++|..
T Consensus 73 ---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 73 ---------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 123344444455555555555555555544 11 2244566666777777777777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.++++.+..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777888888888888888887777653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=115.00 Aligned_cols=165 Identities=13% Similarity=0.121 Sum_probs=109.4
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHh------CC
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFER-------GVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKV------GF 162 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~ 162 (605)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...++.+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445777888888889999998888888763 12223446777777788888888888888887765 21
Q ss_pred -CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhC----
Q 007396 163 -ECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ-------K----SVASWSAIIAAHASNGLWSECLKLFGEMNNE---- 226 (605)
Q Consensus 163 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 226 (605)
.....++..+...|...|++++|.+.|++..+ + ...+|..+...|...|++++|+..|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22355677777888888888888887776542 1 2335666777777777777777777776553
Q ss_pred --CCCCCC-hhHHHHHHHHHhccCChhhHHHHHHHHHH
Q 007396 227 --KCWRPE-ESILVSVLSACTHLGALDLGKCTHGSLIR 261 (605)
Q Consensus 227 --g~~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 261 (605)
+ ..|+ ..++..+...+...|++++|...++.+.+
T Consensus 187 ~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGP-DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1221 23455555556666666666666665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-08 Score=100.68 Aligned_cols=158 Identities=10% Similarity=0.070 Sum_probs=75.0
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHhccCChhhHHHHHHHHHHhcC-----C-chHHHHhH
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPE----ESILVSVLSACTHLGALDLGKCTHGSLIRNIS-----A-LNVIVETS 273 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 273 (605)
...+...|++++|+..|++....-.-.++ ..++..+...+...|+++.|...+....+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33455667777777777766543101122 22344455555555555555555555443211 0 11334455
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPDDVVYVGV 340 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 340 (605)
+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 55555555555555555544321 11 123444445555555555555555554430 111113344444
Q ss_pred HHHHhccCCHHHHHHHHHHhH
Q 007396 341 LSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~ 361 (605)
...+...|+.++|..++++..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 455555555555555555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-10 Score=114.66 Aligned_cols=210 Identities=12% Similarity=-0.059 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 007396 112 FEEALFLYNEMFERGVEPDNFTFPALFKACAKLQAL-KEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFK 190 (605)
Q Consensus 112 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (605)
+++++..+++..... +.+...+..+..++...|++ ++|...++++++.... +...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555443321 12334455555555555666 6666666666555422 45555666666666666666666665
Q ss_pred hcCC--CChhHHHHHHHHHHHC---------CChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc--------CChhh
Q 007396 191 QMDQ--KSVASWSAIIAAHASN---------GLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL--------GALDL 251 (605)
Q Consensus 191 ~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~--------~~~~~ 251 (605)
+..+ |+...|..+...|... |++++|+..|++..+.. +-+...+..+..++... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5432 3445555555566665 66666666666666543 33455566666666665 66777
Q ss_pred HHHHHHHHHHhcCC--chHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 252 GKCTHGSLIRNISA--LNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 252 a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
|...++.+++.... .+...+..+..+|.+.|++++|.+.|++.. ..+...|..+...+...|++++|++.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777766665421 466677777777777788888777777654 224456777777777778887777766544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-09 Score=108.70 Aligned_cols=225 Identities=7% Similarity=-0.066 Sum_probs=167.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcC-----CchHHHHhHHHhHHHhcCCHHHHHHHHhccCC-----CC-----eeeHH
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNIS-----ALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD-----KC-----QLTYS 303 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~-----~~~~~ 303 (605)
....+...|+++.|...+..+.+... +....++..+...|...|+++.|...+++..+ .+ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455788999999999999986421 12356788899999999999999988876541 11 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCChHHHHH
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLRE----GLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLE---YRIVPTVQHYGC 375 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~ 375 (605)
.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|..+|++...- .+.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999988753 1111 1246778888999999999999999988741 122233677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM----PI--QQN-DVVWRSLLSASKVHHN---LEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ .++|...+++.. ..|.....+..++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 999999999999999999886 21 222 2345555566677777 667776666521 112234567789999
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 007396 446 YARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~ 464 (605)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-08 Score=99.54 Aligned_cols=259 Identities=10% Similarity=-0.080 Sum_probs=146.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHccCChHHHHHHHHHHHHhCCC-Cc----hhHHHHH
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFERGVEPDNF----TFPALFKACAKLQALKEGMQIHGHVFKVGFE-CD----LFVQNSL 172 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 172 (605)
....+...|++++|...+++........+.. ++..+...+...|++++|...+++.++.... .+ ..+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345667888999999888887753222221 3455556677788888888888887764211 11 2335666
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC--C--ChhHHH
Q 007396 173 INMYGKCEKVEFASAIFKQMDQ-------K----SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWR--P--EESILV 237 (605)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--p--~~~t~~ 237 (605)
...|...|++++|...+++... + ....+..+...+...|++++|...+++..... .. + ...++.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHHHHH
Confidence 7778888888888887766531 1 12345566677778888888888887766532 11 1 123455
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCch--HHHH-h---HHHhHHHhcCCHHHHHHHHhccCCCCe-------eeHHH
Q 007396 238 SVLSACTHLGALDLGKCTHGSLIRNISALN--VIVE-T---SLIDMYVKCGCLEKGLCLFRMMADKCQ-------LTYSV 304 (605)
Q Consensus 238 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~---~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~~~ 304 (605)
.+...+...|+++.|...++...+....++ .... . ..+..+...|++++|...+++....+. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 556666677777777777776664421111 1111 1 233445667777777777766553321 12344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLRE----GLEPDDV-VYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666655431 1111111 33333344445555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-09 Score=93.45 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHH
Q 007396 233 ESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGL 309 (605)
Q Consensus 233 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~ 309 (605)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677888889999999999999988765 3467889999999999999999999999875 33556777788888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 389 (605)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++.+.... +.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------- 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PN--------------------- 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--cc---------------------
Confidence 88888888888888877642 2344555666666666666666666666665321 11
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 390 LELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 390 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+...|..+...+...|+.++|...++++.+..|+++
T Consensus 143 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 -----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred -----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 233455555555566666666666666666555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-09 Score=98.92 Aligned_cols=189 Identities=11% Similarity=-0.050 Sum_probs=127.6
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC---C-CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA---D-KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVL 341 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 341 (605)
|+..+..+...|.+.|++++|...|++.. . ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45667777778888888888888887654 2 4555666677778888888888888888776 34543 4666777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC--H-HHHHHHHH
Q 007396 342 SACSHAGLVNEGLLCFDRMKLEYRIVPTV-------QHYGCVVDLMGRAGMLGEALELIQSM-PIQQN--D-VVWRSLLS 410 (605)
Q Consensus 342 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~-~~~~~ll~ 410 (605)
..+...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ . ..|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 77788888888888888777422 1223 44666667777778888888888776 55665 3 35666666
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
++.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 6543 34555666666666554444333 2344566799999999888743
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-09 Score=98.08 Aligned_cols=204 Identities=8% Similarity=0.047 Sum_probs=158.4
Q ss_pred CCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHH
Q 007396 230 RPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMI 306 (605)
Q Consensus 230 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li 306 (605)
..|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+. +...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34667888888999999999999999999999886467777777999999999999999999987633 456788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHH
Q 007396 307 SGLAMHGQGKEALSIFSEMLREGLEPD-D-------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT---VQHYGC 375 (605)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 375 (605)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+... ...|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHH
Confidence 9999999999999999999884 444 3 357777788889999999999999988 34565 567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PI-QQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
+...|...|+. .++++ .+ ..+...+..+. ....+.+++|...++++.+++|+++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77777665543 23332 11 12333444333 3445668999999999999999988776666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-09 Score=100.25 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 435 HPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
....+..++.+|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677788888888888888888877664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-09 Score=103.50 Aligned_cols=187 Identities=10% Similarity=0.006 Sum_probs=117.1
Q ss_pred HHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 007396 277 MYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPD-DVVYVGVLS 342 (605)
Q Consensus 277 ~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~ 342 (605)
.|...|++++|...|++... .+ ..+|+.+...|...|++++|+..|++..+. |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555544321 01 235666666666667777776666665542 11000 246777777
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC---H-----HHHHHH
Q 007396 343 ACSHA-GLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN---D-----VVWRSL 408 (605)
Q Consensus 343 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~l 408 (605)
.|... |++++|...|++...-..-..+ ..++..+...|.+.|++++|.+.|++. ...|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999988887642111111 356778888999999999999999886 22222 1 156777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--HcCChhHHHHHHHHHH
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQINSHHPSD-----YVLLSNMYA--RAQRWYDVAKIRTEMA 463 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~ 463 (605)
..++...|+++.|+..+++.++++|..... +..++..|. ..+++++|.+.++.+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 778889999999999999999988874432 344556664 4567888887775543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.1e-08 Score=91.11 Aligned_cols=204 Identities=9% Similarity=0.018 Sum_probs=127.7
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---C---eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMADK---C---QLTYSVMISGLAMHGQGKEALSIFSEMLREGL-EPD-DVVYV 338 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 338 (605)
+...+-.+...+.+.|++++|...|+.+... + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455555666667777777777777766532 2 23455566667777777777777777666321 112 23444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHH
Q 007396 339 GVLSACSH--------AGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLL 409 (605)
Q Consensus 339 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 409 (605)
.+..++.. .|++++|...|+.+...+ |+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 666677777666666432 22 11111111110000000 11245667
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCCCCCccceE
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARA----------QRWYDVAKIRTEMASKGLNQSPGFSLV 476 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 476 (605)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 788999999999999999999999844 4788899999877 899999999999987442
Q ss_pred EECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 007396 477 EVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKF 511 (605)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 511 (605)
.++...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 145567777777777666654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-08 Score=107.76 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=131.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007396 96 AFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLIN 174 (605)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (605)
..+|+.|...|.+.|++++|++.|++.++. .|+ ..+|..+..++.+.|++++|.+.|+++++.... +...|+.+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 456888888888999999999999988875 344 457888888888889999999999988888643 6778888888
Q ss_pred HHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhh
Q 007396 175 MYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDL 251 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~ 251 (605)
+|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHH
Confidence 99999999999988887653 456788888889999999999999999888743 3356778888888888888888
Q ss_pred HHHHHHHHHHh
Q 007396 252 GKCTHGSLIRN 262 (605)
Q Consensus 252 a~~~~~~~~~~ 262 (605)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-07 Score=87.03 Aligned_cols=238 Identities=9% Similarity=0.013 Sum_probs=156.9
Q ss_pred cCCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSV-ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTH 256 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 256 (605)
-.|.+..+..-...+...+. ..---+.++|...|++... .. -.|....+..+.... ..+ +...+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 46777777665555543222 2222344677777776642 11 234433333333322 222 56666
Q ss_pred HHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC-----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007396 257 GSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK-----CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 331 (605)
+..+..+ .++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6666555 334444557888888999999999999877433 345677788899999999999999999987 46
Q ss_pred C-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC---
Q 007396 332 P-----DDVVYVGVLSAC--SH--AGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI--- 398 (605)
Q Consensus 332 p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 398 (605)
| +..+...+..++ .. .++..+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 356666666663 22 34899999999998743 355333344555888999999999998765 21
Q ss_pred -------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 399 -------QQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 399 -------~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.|+. .+...++......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 2544 466567666666776 8899999999999988754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=89.39 Aligned_cols=240 Identities=9% Similarity=0.038 Sum_probs=165.8
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 204 IAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
|.-..-.|.+..++.-..++.. ..+ ......+.+++...|++.... ...|.......+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~-~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTD-NTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCC-HHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cch-HHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc-
Confidence 3445567888888874333211 122 234444567777777766421 2233333333333 333322
Q ss_pred HHHHHHHHhccCC---CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007396 284 LEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDR 359 (605)
Q Consensus 284 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 359 (605)
|...|++... ++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777876653 344556677888999999999999999987655423 345777788899999999999999999
Q ss_pred hHHhcCCCC-----ChHHHHHHHHH--HHh--cCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007396 360 MKLEYRIVP-----TVQHYGCVVDL--MGR--AGMLGEALELIQSM-PIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLF 429 (605)
Q Consensus 360 ~~~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 429 (605)
|.+ ..| +..+...|..+ ... .++..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.
T Consensus 162 ~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 974 345 24555555555 333 34899999999999 444653444455558899999999999999888
Q ss_pred hh----------CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 430 QI----------NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 430 ~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+. +|+++.+...++..+...|+ +|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 76 48888888788877778887 8999999998854
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-09 Score=98.28 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=23.6
Q ss_pred HHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007396 284 LEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGKEALSIFSEMLR 327 (605)
Q Consensus 284 ~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 327 (605)
+..+...++.....+ ..+|..+...|...|++++|..+|++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444322 34567777788888888888888877664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-08 Score=81.26 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=72.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCC
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ-QNDVVWRSLLSASKVHHN 417 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~ 417 (605)
+...+...|++++|..+|+.+... .+.+...+..+...+...|++++|...++++ ... .+...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444421 1123344444455555555555555555544 111 234456666666777777
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777777777777777777777777777777776653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-08 Score=95.81 Aligned_cols=166 Identities=8% Similarity=-0.100 Sum_probs=93.0
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCCC-----C----eeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-CC----
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMADK-----C----QLTYSVMISGLAMH-GQGKEALSIFSEMLREGLE-PD---- 333 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~---- 333 (605)
.+++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34455555555555555555555443210 1 23456666667775 7777777777776542110 01
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH----
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTV-----QHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV---- 403 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---- 403 (605)
..++..+...+...|++++|..+|++......-.+.. ..|..+...+...|++++|...+++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2356667777777788888888777776321111111 14566666777778888888887776 4444322
Q ss_pred --HHHHHHHHHH--hcCChHHHHHHHHHHHhhCCC
Q 007396 404 --VWRSLLSASK--VHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 404 --~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+..++.++. ..+++++|...++++.+++|.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2344455553 345677777777666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-07 Score=85.14 Aligned_cols=180 Identities=11% Similarity=0.024 Sum_probs=111.4
Q ss_pred HHHhHHHhHHHhcCCHHHHHHHHhccCC--CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHH
Q 007396 269 IVETSLIDMYVKCGCLEKGLCLFRMMAD--KC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV----VYV 338 (605)
Q Consensus 269 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 338 (605)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445566677778888888888877652 22 135666777778888888888888887764 23321 233
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCCCC
Q 007396 339 GVLSACSH------------------AGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSMPIQ 399 (605)
Q Consensus 339 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 399 (605)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.....+ +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34455555555555422 122 1111111000 0000000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 400 QNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP---SDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
......+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445567889999999999999999999865 56889999999999999999999999886643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-07 Score=88.98 Aligned_cols=203 Identities=9% Similarity=-0.007 Sum_probs=142.8
Q ss_pred CChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc--hHHHHhHHHhHHHhcCCHHHHHHHHhccCC--C-C---eeeH
Q 007396 231 PEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL--NVIVETSLIDMYVKCGCLEKGLCLFRMMAD--K-C---QLTY 302 (605)
Q Consensus 231 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~ 302 (605)
.+...+......+.+.|+++.|...++.+++..... ....+..+...|.+.|++++|...|++..+ | + ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 356677778888899999999999999999875322 167788899999999999999999998763 2 1 3456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 007396 303 SVMISGLAM--------HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYG 374 (605)
Q Consensus 303 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 374 (605)
..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHHH
Confidence 777888888 99999999999999874 3443211 1111111111110 012245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCCch-
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVH----------HNLEIGEIAAKNLFQINSHHPSD- 438 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~~~~- 438 (605)
.+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|+..++++.+..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6677888899999999988886 22333 23666777777755 88999999999999999987643
Q ss_pred --HHHHHHHHHHcCChh
Q 007396 439 --YVLLSNMYARAQRWY 453 (605)
Q Consensus 439 --~~~l~~~~~~~g~~~ 453 (605)
...+..++...|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 344444554444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-07 Score=77.71 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=98.6
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
.|..+...+...|++++|..+|+++.+.. ..+...+..+...+...|++++|..+|+.+... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777778888888888888877643 234566777777788888888888888887742 233566777788888
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 2223 4567888888888899999999999998888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=91.89 Aligned_cols=173 Identities=7% Similarity=-0.057 Sum_probs=130.4
Q ss_pred HHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 286 KGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 286 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
...+.+......+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|+.++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 3344444444344445666777788888899999999888874 44 446777788888899999999999988763
Q ss_pred CCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchH
Q 007396 365 RIVPTVQHYGCVV-DLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDY 439 (605)
Q Consensus 365 ~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~ 439 (605)
..|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 245544333222 2356677778888888776 3445 45688899999999999999999999999999987 7789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 007396 440 VLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 440 ~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
..|+.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=87.76 Aligned_cols=140 Identities=5% Similarity=-0.138 Sum_probs=97.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML 386 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 386 (605)
.+...|++++|+..+++... ..|+. ..+..+...|...|++++|...|++..+. -+-+...|..+...|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34445666777777666543 22322 34555666777777777777777777632 122466777777778888888
Q ss_pred HHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHH-HHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 387 GEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEI-AAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 387 ~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
++|...|++. .+.|+ ...|..+...+...|+.++|.+ .++++.+++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888887776 44554 5578888888888888876555 4688999999998888888888877774
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-05 Score=83.06 Aligned_cols=182 Identities=9% Similarity=-0.071 Sum_probs=89.6
Q ss_pred CChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-CcchHHHHHHHHH----ccCChHH
Q 007396 79 GSMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVE-FEEALFLYNEMFER-GVEP-DNFTFPALFKACA----KLQALKE 149 (605)
Q Consensus 79 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 149 (605)
|+++.+..+|++... |++..|..-+.-..+.+. .+....+|+..... |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 667777777777554 677777777766655553 34556677766553 3323 3344554444332 2345677
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHc-------------CCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHCCC
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGK-------------CEKVEFASAIFKQMD----QKSVASWSAIIAAHASNGL 212 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~ 212 (605)
+..+|+.+++.....-...|......-.. .+.+..|+.+++.+. ..+...|...+.---..+.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 77777777764222111222222111000 011222333332221 1133345444433221110
Q ss_pred -------hhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 213 -------WSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 213 -------~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
.+.+..+|+++.... +-+...|...+.-+.+.|+.+.|+.+++..++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 233456666666542 444555555555566666777777777777666
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-08 Score=106.89 Aligned_cols=167 Identities=10% Similarity=-0.052 Sum_probs=128.3
Q ss_pred HhcCCHHHHHHHHhccC-----------CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 007396 279 VKCGCLEKGLCLFRMMA-----------DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSH 346 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 346 (605)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788888888887765 234567777888888888888898888888874 34 45677777788888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
.|++++|...|++..+. .| +...|..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88899998888888742 34 46777888888888888888 8888776 4445 34578888888888899999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
.++++.+++|.+...+..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9998888888888888888888866555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=83.02 Aligned_cols=154 Identities=11% Similarity=0.015 Sum_probs=89.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhc
Q 007396 306 ISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL-MGRA 383 (605)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 383 (605)
...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...|+..... .|+...+..+... +.+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 33444445555555555444331 22 2234444444555555555555555544421 1222221111111 1111
Q ss_pred CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHcCChhHHHHHH
Q 007396 384 GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH--PSDYVLLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 384 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 459 (605)
+...+|.+.+++. ...| +...+..+..++...|++++|+..++++++.+|.. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555554 3345 45688888888899999999999999999998864 558888999999999999999888
Q ss_pred HHHHh
Q 007396 460 TEMAS 464 (605)
Q Consensus 460 ~~m~~ 464 (605)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-07 Score=98.47 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 007396 281 CGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
.|++++|.+.|++..+. +...|..+...|.+.|++++|.+.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999987643 4567888999999999999999999999874 44 467888888999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhh
Q 007396 357 FDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH---HNLEIGEIAAKNLFQI 431 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~ 431 (605)
|++..+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999843 2335788999999999999999999999987 4445 456888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 007396 432 NSHHPSDYVLLS 443 (605)
Q Consensus 432 ~~~~~~~~~~l~ 443 (605)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.1e-07 Score=95.62 Aligned_cols=147 Identities=9% Similarity=-0.039 Sum_probs=96.3
Q ss_pred cCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHH
Q 007396 246 LGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 322 (605)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367778888888877664 335677788888888888888888888876532 4567777888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHC
Q 007396 323 SEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA---GMLGEALELIQSM 396 (605)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 396 (605)
++..+.. ..+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887742 224567777778888888888888888887742 123466777788888888 8888888888776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-07 Score=97.61 Aligned_cols=189 Identities=12% Similarity=-0.011 Sum_probs=143.4
Q ss_pred hccCChhhHHHHHHHHH--------HhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhc
Q 007396 244 THLGALDLGKCTHGSLI--------RNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMH 312 (605)
Q Consensus 244 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 312 (605)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 332 4466778888899999999999999998876 33567888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 007396 313 GQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALE 391 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 391 (605)
|++++|+..|++..+. .| +...+..+..++...|++++ ...|++..+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999874 45 34677888889999999999 9999998842 12356788899999999999999999
Q ss_pred HHHHC-CCCCCHH-HHHHHHHHHHhcCC-----hHHHHHHHHHHHhhCCCCCch
Q 007396 392 LIQSM-PIQQNDV-VWRSLLSASKVHHN-----LEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 392 ~~~~m-~~~p~~~-~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.|++. ...|+.. .|..+..++...++ .+...++.+.+.+..+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99998 6677754 77777777755554 344445555555555544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-06 Score=78.56 Aligned_cols=159 Identities=8% Similarity=-0.087 Sum_probs=99.1
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG----LVNEGLLCFDRMKLEYRIVPTVQHYGC 375 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 375 (605)
..+..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|+.... . -+...+..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~~ 90 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHHH
Confidence 334444444444555555555555555543 33444445445554 4 66666666666652 2 24455555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 376 VVDLMGR----AGMLGEALELIQSM-PIQQN---DVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 376 li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
|..+|.. .+++++|.++|++. ...|. ...+..|...|.. .++.++|...+++..+. |.++..+..|.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 6666655 56777777777766 33332 5566677777766 67888888888888877 45566778888
Q ss_pred HHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 007396 444 NMYARA-Q-----RWYDVAKIRTEMASKGL 467 (605)
Q Consensus 444 ~~~~~~-g-----~~~~a~~~~~~m~~~~~ 467 (605)
.+|... | ++++|.+.+++..+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888754 3 78888888888877663
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-06 Score=87.97 Aligned_cols=358 Identities=7% Similarity=-0.041 Sum_probs=211.3
Q ss_pred CCC-ChHHHHHHHhhcCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCC-hHHHHH
Q 007396 77 HWG-SMDYACSIFRQIDE--PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQA-LKEGMQ 152 (605)
Q Consensus 77 ~~g-~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~ 152 (605)
+.| +++.|+.+|+++.. |. |+++.+..+|++.... .|+...|..-++-..+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 37788888877643 33 7899999999999874 5788888888877766663 456778
Q ss_pred HHHHHHHh-CCCC-chhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-C--Ch-hHHHHHHHHHH-------------H
Q 007396 153 IHGHVFKV-GFEC-DLFVQNSLINMYGK----CEKVEFASAIFKQMDQ-K--SV-ASWSAIIAAHA-------------S 209 (605)
Q Consensus 153 ~~~~~~~~-g~~~-~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~--~~-~~~~~li~~~~-------------~ 209 (605)
+|+.++.. |..+ +..+|...+..+.. .|+++.++++|++... | +. ..|......-. .
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88888775 5433 66788888776543 4678899999998753 2 11 12222211100 1
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc--CC-----hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL--GA-----LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
.+.+..|..+++++...- -..+...|...+.--... +- .+.+..+++.++... +.+..+|...+..+.+.|
T Consensus 150 ~~~y~~ar~~y~~~~~~~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLI-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 122333444454443310 001222343333322211 11 234567888887754 445778888888888999
Q ss_pred CHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHhccCCH
Q 007396 283 CLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREG---------LEP---DDVVYVGVLSACSHAGLV 350 (605)
Q Consensus 283 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~a~~~~g~~ 350 (605)
+.+.|..+|++.... +.... +--.|+.....++. ++.+.+.- ..+ ....|...+....+.+..
T Consensus 228 ~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp CHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 999999999865433 22211 11123332221222 22222210 011 113455666666667789
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-MLGEALELIQSM--PIQQNDVVWRSLLSASKVHHNLEIGEIAAKN 427 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 427 (605)
+.|..+|+.. +..+ .+...|.....+-.+.| +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+|++
T Consensus 303 ~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 303 ELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988 3222 24445544333333334 689999999876 2212344566677777888999999999998
Q ss_pred HHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 428 LFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+ +.....+...+..-...|+.+.+.++++++.+
T Consensus 380 ~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 L----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp S----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 23445666677666778999999998887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-07 Score=81.75 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCCChh-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNEKCWRPEES-ILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK 280 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 280 (605)
.....+...|++++|+..|++.... .|+.. .+.. . . ... .........+.+...|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~-~-~---~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYW-T-N---VDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHH-H-H---SCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH-h-h---hcc--------------hhhhhHHHHHHHHHHHHH
Confidence 3445566777777777777777663 34322 2211 0 0 000 001112233446666777
Q ss_pred cCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCC--HHHHH
Q 007396 281 CGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGL--VNEGL 354 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 354 (605)
.|++++|...|++.. ..++..|..+...|...|++++|+..|++..+. .|+ ..++..+...+...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 777777777776654 234556677777777777777777777777663 343 4455556555544433 23334
Q ss_pred HHHHHhHHhcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007396 355 LCFDRMKLEYRIVPTVQ--HYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLS 410 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 410 (605)
..++... .|+.. .+..+...+...|++++|...|++. ...|+......+..
T Consensus 145 ~~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 145 TDYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444332 23322 2233344455567777777777765 56676555444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=79.18 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++.+++|+++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456777778888999999999999887 4455 46689999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-07 Score=86.50 Aligned_cols=102 Identities=6% Similarity=-0.074 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCC---CCC-ChhHHHHHHHHHhccCChhhHHHH
Q 007396 180 EKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKC---WRP-EESILVSVLSACTHLGALDLGKCT 255 (605)
Q Consensus 180 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~p-~~~t~~~ll~a~~~~~~~~~a~~~ 255 (605)
+++++|...|++. ...|...|++++|...|.+...... -.+ -..+|..+...+...|++++|...
T Consensus 30 ~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 98 (307)
T 2ifu_A 30 PDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98 (307)
T ss_dssp CCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred CCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555442 3445556666666666655443210 000 123445555555566666666666
Q ss_pred HHHHHHhcC---Cc--hHHHHhHHHhHHHhcCCHHHHHHHHhc
Q 007396 256 HGSLIRNIS---AL--NVIVETSLIDMYVKCGCLEKGLCLFRM 293 (605)
Q Consensus 256 ~~~~~~~~~---~~--~~~~~~~li~~y~~~g~~~~A~~~f~~ 293 (605)
++..++.-. .+ ...+++.+...|.+ |++++|+..|++
T Consensus 99 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 99 IEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 655543210 00 12334444444444 555555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.2e-08 Score=83.73 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=100.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCC
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHN 417 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 417 (605)
...+...|++++|...+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566788999999988776 23343 345567889999999999999999987 5556 45699999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHH-HHHHHhC
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKI-RTEMASK 465 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 465 (605)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5777663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-06 Score=83.52 Aligned_cols=161 Identities=6% Similarity=-0.019 Sum_probs=112.1
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHH-HHHHH
Q 007396 130 DNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQ--KSVASWS-AIIAA 206 (605)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~-~li~~ 206 (605)
+...+..+...+...|++++|...++.+++..+. +...+..+...|.+.|++++|...|++... |+...+. .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3445666677777888888888888888887644 667788888888888888888888888864 4433222 22233
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc-hHHHHhHHHhHHHhcCCHH
Q 007396 207 HASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL-NVIVETSLIDMYVKCGCLE 285 (605)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~ 285 (605)
+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++..... +...+..++..|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 666777888888888877754 4456666677777777777777777777777665332 2556666777777777666
Q ss_pred HHHHHHhc
Q 007396 286 KGLCLFRM 293 (605)
Q Consensus 286 ~A~~~f~~ 293 (605)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66666553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=85.32 Aligned_cols=219 Identities=10% Similarity=-0.001 Sum_probs=149.2
Q ss_pred CCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHH
Q 007396 210 NGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLC 289 (605)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 289 (605)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 567888999998877632 211 0 11135666666655543 456777888888888
Q ss_pred HHhccCCC-----C----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 007396 290 LFRMMADK-----C----QLTYSVMISGLAMHGQGKEALSIFSEMLREG---LEPD--DVVYVGVLSACSHAGLVNEGLL 355 (605)
Q Consensus 290 ~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 355 (605)
.|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77765311 1 3467788888999999999999998876531 1121 2467778888888 99999999
Q ss_pred HHHHhHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC---CCC---H-HHHHHHHHHHHhcCChHHHHH
Q 007396 356 CFDRMKLEYRIVP----TVQHYGCVVDLMGRAGMLGEALELIQSM-PI---QQN---D-VVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 356 ~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~---~-~~~~~ll~a~~~~g~~~~a~~ 423 (605)
.|++...-..-.. ...++..+...|.+.|++++|.+.|++. .+ .++ . ..+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998774221111 1467888899999999999999999886 11 122 1 256666677788899999999
Q ss_pred HHHHHHhhCCCCCch-----HHHHHHHHHHcCChhHHHH
Q 007396 424 AAKNLFQINSHHPSD-----YVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~ 457 (605)
.+++.+ ..|..... ...++..| ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88864432 33455555 5677666555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.8e-07 Score=77.43 Aligned_cols=98 Identities=6% Similarity=-0.034 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456667788888999999999999887 3445 5668888999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 007396 447 ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999987643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-06 Score=78.25 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=101.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKV 414 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~ 414 (605)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445556667788888888777653 457777888888888888888888888776 3334 45688888889999
Q ss_pred cCChHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 415 HHNLEIGEIAAKNLFQINSHHP----------------SDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.|++++|+..++++.+..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 789999999999999999999999998754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-06 Score=77.59 Aligned_cols=178 Identities=8% Similarity=-0.012 Sum_probs=99.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHH
Q 007396 137 LFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 216 (605)
....+...|++++|...++.+++..+. +...+.. ....... ......++.+...|.+.|++++|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNVDKNS----------EISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHSCTTS----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhhcchh----------hhhHHHHHHHHHHHHHCCCHHHH
Confidence 334455667777777777777766321 1222211 0000000 00111233467777888888888
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC--HHHHHHHHhcc
Q 007396 217 LKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC--LEKGLCLFRMM 294 (605)
Q Consensus 217 ~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--~~~A~~~f~~m 294 (605)
+..|++..+.. +-+...+..+..++...|+++.|...++.+++.. +.+..++..+...|...|+ .+.+...|+..
T Consensus 74 ~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 74 YLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888877743 3355666777777777777777777777777765 3356666667766655443 34455556555
Q ss_pred CCCCee--eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007396 295 ADKCQL--TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDV 335 (605)
Q Consensus 295 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (605)
..++.. .|..+..++...|++++|...|++..+ +.|+..
T Consensus 151 ~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 544432 223334445556666677777766665 455543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=79.96 Aligned_cols=184 Identities=14% Similarity=0.014 Sum_probs=130.1
Q ss_pred ChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc--hHHHHhHHHhHHHhcCCHHHHHHHHhccCC--CC-ee---eHH
Q 007396 232 EESILVSVLSACTHLGALDLGKCTHGSLIRNISAL--NVIVETSLIDMYVKCGCLEKGLCLFRMMAD--KC-QL---TYS 303 (605)
Q Consensus 232 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~---~~~ 303 (605)
+...+......+.+.|+++.|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ .. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666777889999999999999999875432 245778889999999999999999998763 32 21 344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 007396 304 VMISGLAM------------------HGQGKEALSIFSEMLREGLEPDDVV-YVGVLSACSHAGLVNEGLLCFDRMKLEY 364 (605)
Q Consensus 304 ~li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 364 (605)
.+..++.. .|+.++|+..|+++.+. .|+... ...... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 45555543 57899999999999874 455432 111110 001111111
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 365 RIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
.....+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++++....|++.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12234667788999999999999887 333442 3688888899999999999999999998888754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-05 Score=76.14 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC-----
Q 007396 313 GQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVN--EGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM----- 385 (605)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 385 (605)
+++++++++++++.+... -|...|..-.-.+.+.|..+ ++.++++.+.+. . .-|-..|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhh
Confidence 445555555555554321 13344444444444444444 555555555531 1 1233344433334444443
Q ss_pred -HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH-HHHHHHHHHHhhC---CCCCchHHHHHHHHHHcCChhHHHHH
Q 007396 386 -LGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLE-IGEIAAKNLFQIN---SHHPSDYVLLSNMYARAQRWYDVAKI 458 (605)
Q Consensus 386 -~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~-~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~ 458 (605)
++++++.++++ ...| |...|+-+-..+...|+.. ....+.+++.+++ |.++.....++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55566665554 2233 4456666666665555532 2444555555544 55556666666677666777777777
Q ss_pred HHHHHh
Q 007396 459 RTEMAS 464 (605)
Q Consensus 459 ~~~m~~ 464 (605)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=76.25 Aligned_cols=171 Identities=11% Similarity=-0.017 Sum_probs=115.4
Q ss_pred HHHHHhhcCC-CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccC----ChHHHHHHHHHHH
Q 007396 84 ACSIFRQIDE-PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQ----ALKEGMQIHGHVF 158 (605)
Q Consensus 84 A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 158 (605)
|.+.|.+..+ .+..++..|-..|...+++++|+..|++..+.| +...+..+...+.. + +.++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544332 466677777777777788888888888877765 44556666666665 5 7888888888877
Q ss_pred HhCCCCchhHHHHHHHHHHc----CCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----CCChhHHHHHHHHHHh
Q 007396 159 KVGFECDLFVQNSLINMYGK----CEKVEFASAIFKQMDQKS-----VASWSAIIAAHAS----NGLWSECLKLFGEMNN 225 (605)
Q Consensus 159 ~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 225 (605)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 665 55667777777776 677888888887776543 4677777777777 6778888888887766
Q ss_pred CCCCCCChhHHHHHHHHHhcc-C-----ChhhHHHHHHHHHHhcC
Q 007396 226 EKCWRPEESILVSVLSACTHL-G-----ALDLGKCTHGSLIRNIS 264 (605)
Q Consensus 226 ~g~~~p~~~t~~~ll~a~~~~-~-----~~~~a~~~~~~~~~~~~ 264 (605)
.+ .+...+..+...+... | +.++|...++...+.|.
T Consensus 158 ~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 42 2333455555555332 2 67777777777777764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=76.50 Aligned_cols=151 Identities=13% Similarity=0.024 Sum_probs=78.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHH-HhccC
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSA-CTHLG 247 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a-~~~~~ 247 (605)
+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhc
Confidence 34445555555555555555542 23445555555555555555555555555442 2232221111101 11111
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCC-----eeeHHHHHHHHHhcCCHHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKC-----QLTYSVMISGLAMHGQGKEALSIF 322 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 322 (605)
....+...++..++.. +.+...+..+...|.+.|++++|...|+++.+.+ ...|..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555555543 2245566666666777777777777776654322 235666667777777777777777
Q ss_pred HHHH
Q 007396 323 SEML 326 (605)
Q Consensus 323 ~~m~ 326 (605)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9e-06 Score=78.36 Aligned_cols=160 Identities=10% Similarity=0.021 Sum_probs=112.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGL-EPDDV----VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGC 375 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 375 (605)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888887765321 22211 2334555666777888888888887742111222 236778
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-------CC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-------PI-QQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYV 440 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-------~~-~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 440 (605)
+...|...|++++|.+.++++ +. .+.. .++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888877765 11 1222 278888889999999999999999998775332 46788
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHh
Q 007396 441 LLSNMYARAQR-WYDVAKIRTEMAS 464 (605)
Q Consensus 441 ~l~~~~~~~g~-~~~a~~~~~~m~~ 464 (605)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-05 Score=73.09 Aligned_cols=225 Identities=9% Similarity=-0.029 Sum_probs=153.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCh-hHHHHHHHHHhccC--ChhhHHHHHHHHHHhcCCchHHHHhHHHhHH----Hhc---
Q 007396 212 LWSECLKLFGEMNNEKCWRPEE-SILVSVLSACTHLG--ALDLGKCTHGSLIRNISALNVIVETSLIDMY----VKC--- 281 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~-~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~--- 281 (605)
..++|+.+++++... .|+. ..++.--.++...+ +++++...++.++...+ -+..+|+.--..+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 335666666666663 3433 33444444445555 66666666666666542 2444454444444 444
Q ss_pred CCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------H
Q 007396 282 GCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGK--EALSIFSEMLREGLEPDDVVYVGVLSACSHAGL------V 350 (605)
Q Consensus 282 g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 350 (605)
+++++++++++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 67888888888776 345567777777777788877 999999999886433 56667666666666665 8
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHC-CC----CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007396 351 NEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGE-ALELIQSM-PI----QQNDVVWRSLLSASKVHHNLEIGEIA 424 (605)
Q Consensus 351 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~a~~~~g~~~~a~~~ 424 (605)
+++.++++.+... -+-|...|+.+-.++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8899999888842 23467788888888888887544 55677765 22 23567889999999999999999999
Q ss_pred HHHHHh-hCCCCCchHHHHH
Q 007396 425 AKNLFQ-INSHHPSDYVLLS 443 (605)
Q Consensus 425 ~~~~~~-~~~~~~~~~~~l~ 443 (605)
++.+.+ .+|.+...+...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 999996 7887666655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-06 Score=80.85 Aligned_cols=162 Identities=9% Similarity=-0.025 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--hHHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLREGLEPDD-----VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRI--VPT--VQHY 373 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~ 373 (605)
...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++.......- .+. ...|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455667777777777777776654222111 12333445566778888888888877632111 111 3477
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCch
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM----PIQQN-----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPSD 438 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 438 (605)
+.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...++++++..+. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 78888888888888888888765 11222 247888888999999999999999998876432 1457
Q ss_pred HHHHHHHHHHcCChhHH-HHHHHHHHh
Q 007396 439 YVLLSNMYARAQRWYDV-AKIRTEMAS 464 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a-~~~~~~m~~ 464 (605)
|..++.+|.+.|++++| ...+++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88899999999999999 777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.5e-06 Score=75.97 Aligned_cols=92 Identities=10% Similarity=-0.118 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 169 QNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
+..+...|...|++++|.+.|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 44556667778888888888888777777778888888888888888888888777643 3345555566666666666
Q ss_pred hhhHHHHHHHHHHh
Q 007396 249 LDLGKCTHGSLIRN 262 (605)
Q Consensus 249 ~~~a~~~~~~~~~~ 262 (605)
++.|...++.+.+.
T Consensus 87 ~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-06 Score=72.86 Aligned_cols=97 Identities=7% Similarity=-0.068 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556677788889999999998886 3345 56688888889999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.++...+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-06 Score=72.49 Aligned_cols=127 Identities=8% Similarity=-0.038 Sum_probs=96.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
.+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777777777777777632 1234667777777888888888888888776 3334 4568888888999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHH--HHHHHHHcCChhHHHHHHHHHHh
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVL--LSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..|++++|...++++.+..|.+...+.. ++..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999988877744 44448888999999999887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-06 Score=71.40 Aligned_cols=106 Identities=6% Similarity=-0.051 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~ 413 (605)
.+......+.+.|++++|...|++..+. -+.+...|..+...|.+.|++++|.+.+++. .+.|+ ...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555555566666666666555521 1223455555555555666666666555554 23332 345666666666
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
..|++++|+..++++++++|+++..+..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 666666666666666666666655544443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=72.18 Aligned_cols=101 Identities=9% Similarity=0.096 Sum_probs=89.1
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 007396 366 IVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLL 442 (605)
Q Consensus 366 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 442 (605)
+.|+ ...+.-....|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 356677888999999999999999987 4455 566899999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC
Q 007396 443 SNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.+|...|++++|.+.+++..+.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998743
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.2e-06 Score=67.75 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|..+|+.+... .+.+...+..+...+.+.|++++|...++++ ...| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45556666667777777777777776632 1234566667777777777777777777766 2223 456777888888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQ 450 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 450 (605)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888999999998888888888887777777766543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-06 Score=85.17 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...|..+...|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|.+...+..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 367788888888999999999988887 4445 46688899999999999999999999999999999999999999999
Q ss_pred HcCChhHH-HHHHHHHH
Q 007396 448 RAQRWYDV-AKIRTEMA 463 (605)
Q Consensus 448 ~~g~~~~a-~~~~~~m~ 463 (605)
..|++++| .++++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44566554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-06 Score=68.17 Aligned_cols=116 Identities=5% Similarity=-0.095 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777632 1235666777777778888888888887776 3334 456788888888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998888888888888888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.5e-06 Score=68.63 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|...|+.... -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555566666666666666666552 11224555666666666667777776666665 2233 455777777788
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
...|++++|...++++.+.+|.+...+..+..++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-05 Score=76.55 Aligned_cols=164 Identities=9% Similarity=-0.053 Sum_probs=120.2
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCC---Ce------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADK---CQ------LTYSVMISGLAMHGQGKEALSIFSEMLREGL---EPD-- 333 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-- 333 (605)
...+...+..|...|++++|.+.++...+. .. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778888999999999988755421 11 1234455667888999999999999875322 122
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHC-C------CCCC
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELIQSM-P------IQQN 401 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p~ 401 (605)
..+++.+...|...|++++|..+|++...-....|+ ...|..+...|.+.|++++|.+.+++. . ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888889999999999999999988732122222 257888899999999999999999876 1 1111
Q ss_pred -HHHHHHHHHHHHhcCChHHH-HHHHHHHHhh
Q 007396 402 -DVVWRSLLSASKVHHNLEIG-EIAAKNLFQI 431 (605)
Q Consensus 402 -~~~~~~ll~a~~~~g~~~~a-~~~~~~~~~~ 431 (605)
..+|..+...+...|+.++| ...++++..+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45788888899999999999 7778887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.9e-07 Score=84.59 Aligned_cols=190 Identities=9% Similarity=-0.061 Sum_probs=107.9
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSA 343 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 343 (605)
...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444555566666666666666666543 224455666666666777777777777766653 33 34556666667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
+...|++++|...|+...+. .|+. ..+...+....+.+....... .......++......+ ..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHHH
Confidence 77777777777777665531 1110 001111111111111111111 2222223333333333 2222 57888999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHc-CChhHHHHHHHHHHhC
Q 007396 423 IAAKNLFQINSHHPSDYVLLSNMYARA-QRWYDVAKIRTEMASK 465 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 465 (605)
+.++++.+.+|.+......+...+.+. +++++|.++|+.+.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999998888888776666777777776 7788999999887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=79.19 Aligned_cols=131 Identities=10% Similarity=-0.041 Sum_probs=86.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHh
Q 007396 305 MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT--VQHYGCVVDLMGR 382 (605)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 382 (605)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHHH
Confidence 455666777777777777776653 35444444445567777888888888875542 11 111 2356667777888
Q ss_pred cCCHHHHHHHHHHC---CCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 383 AGMLGEALELIQSM---PIQQN-D-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 383 ~g~~~~A~~~~~~m---~~~p~-~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.|++++|++.|++. +..|. . ..+..+..++...|+.++|...|+++...+|. +..+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 88888888888876 22143 2 25666667788888888888888888888886 44433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.9e-05 Score=72.55 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=45.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChh----HHHHHHHHHhccCChhhHHHHHHHHHHhcCC-ch----HHHHhH
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEES----ILVSVLSACTHLGALDLGKCTHGSLIRNISA-LN----VIVETS 273 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 273 (605)
.+..+...|++++|..++++........|+.. .+..+...+...++++.|...+..+.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777777777777777765321112211 1112333444445555555555555542211 11 224555
Q ss_pred HHhHHHhcCCHHHHHHHHhcc
Q 007396 274 LIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m 294 (605)
+...|...|++++|...|+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.28 E-value=4e-06 Score=75.49 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=21.5
Q ss_pred CCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 179 CEKVEFASA---IFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 179 ~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222233445555555555555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.9e-06 Score=67.69 Aligned_cols=96 Identities=5% Similarity=-0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566667778888888888888776 3344 456888888889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 007396 449 AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~ 466 (605)
.|++++|.+.+++..+.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 999999999998887643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=69.63 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..++++++++|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788899999999999887 4455 5668888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 007396 450 QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 450 g~~~~a~~~~~~m~~~~ 466 (605)
|++++|...+++..+.+
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999988754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=74.13 Aligned_cols=119 Identities=6% Similarity=0.028 Sum_probs=82.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHH-HHhcCCh--HH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSA-SKVHHNL--EI 420 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a-~~~~g~~--~~ 420 (605)
..|++++|...++..... -+.+...|..+...|...|++++|.+.|++. ...| +...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666666666665532 1234566666677777777777777777665 2223 44566667777 6677887 88
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|...++++.+.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888887754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=66.52 Aligned_cols=99 Identities=8% Similarity=-0.019 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 368 PTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
.+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|+++.|...++++.+.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777778888888888888888776 3334 456888888888999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhCC
Q 007396 446 YARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=65.34 Aligned_cols=97 Identities=9% Similarity=0.025 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH--HPSDYVLLSNM 445 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 445 (605)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344556666677777777777777765 2223 4557777888888888888888888888888888 88888888888
Q ss_pred HHHc-CChhHHHHHHHHHHhCC
Q 007396 446 YARA-QRWYDVAKIRTEMASKG 466 (605)
Q Consensus 446 ~~~~-g~~~~a~~~~~~m~~~~ 466 (605)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.8e-06 Score=71.40 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666655 2333 34466666666777777777777777777777777777777777777
Q ss_pred HcCChhHHHHHHHHHHhC
Q 007396 448 RAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~ 465 (605)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777766653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=64.70 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999987 3333 56688999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 007396 448 RAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~ 466 (605)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999988643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=72.54 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=27.3
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+..+...+...|++++|...+++.... |..| ....+..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555444331 1111 11234444444455555555555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=65.91 Aligned_cols=99 Identities=4% Similarity=-0.008 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 368 PTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++.+..|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888899999999999999999987 5555 566888999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhCC
Q 007396 446 YARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~ 466 (605)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=63.75 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+.+|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555556666666666666666665 2223 445666666677777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 007396 449 AQRWYDVAKIRTEMASK 465 (605)
Q Consensus 449 ~g~~~~a~~~~~~m~~~ 465 (605)
.|++++|.+.++...+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.3e-06 Score=76.63 Aligned_cols=182 Identities=7% Similarity=-0.061 Sum_probs=128.3
Q ss_pred hcCCHHHHHHHHhccCCC---CeeeHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------
Q 007396 280 KCGCLEKGLCLFRMMADK---CQLTYSVM-------ISGLAMHGQGKEALSIFSEMLREGLEPDD--------------- 334 (605)
Q Consensus 280 ~~g~~~~A~~~f~~m~~~---~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 334 (605)
..++.+.|.+.|.+.... ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 456777777777766522 23466665 3444444445555554444433 33322
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCH----H
Q 007396 335 -------VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQND----V 403 (605)
Q Consensus 335 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 403 (605)
.....+...+...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677889999999999998873 2354435566667889999999999999977433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQIN--SH-HPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|..+|+++...+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788889999999999999999998543 33 34467789999999999999999999998743
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=66.03 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|+..++++.+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455555666666666666666666665 44555 346666666677777777777777777777777666777777
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 007396 444 NMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777766653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.8e-06 Score=77.89 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhc-CCHHHHHHHHHHC
Q 007396 347 AGLVNEGLLCFDRMKLEYRIVPTV-QHYGCVVDLMGRA-GMLGEALELIQSM 396 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m 396 (605)
.|+.++|.+.++... ...|+. .....+...+.+. +.+++|.++|.+.
T Consensus 148 ~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466667766666555 233432 3333333444444 5677788888776
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=71.83 Aligned_cols=170 Identities=9% Similarity=-0.050 Sum_probs=97.3
Q ss_pred hHHHhcCCHHHHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 276 DMYVKCGCLEKGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 276 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
......|+++++.+.++..... ....|..+...+...|++++|+..|++..+. .|+...+... ..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 3334445555555555433211 2334555666666677777777777766653 2221100000 0000
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
- -.. .....|..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++
T Consensus 82 ~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 K---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 000 01256667777888888888888888776 3344 456888888899999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHcCChhHHH-HHHHHHHhCC
Q 007396 431 INSHHPSDYVLLSNMYARAQRWYDVA-KIRTEMASKG 466 (605)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 466 (605)
++|.++..+..+..++...|+.+++. ..+..|..++
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999888887776 5555554433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-05 Score=67.26 Aligned_cols=91 Identities=5% Similarity=-0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMY 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 278 (605)
.|..+...+...|++++|...|++..... +.+...+..+...+...|+++.|...+....+.. +.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44555555555666666666666555432 2233444444444444444444444444444432 12233333344444
Q ss_pred HhcCCHHHHHHHHh
Q 007396 279 VKCGCLEKGLCLFR 292 (605)
Q Consensus 279 ~~~g~~~~A~~~f~ 292 (605)
.+.|++++|.+.|+
T Consensus 92 ~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 92 MALGKFRAALRDYE 105 (166)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHH
Confidence 44444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=9.2e-06 Score=69.39 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
..|..+...+.+.|++++|+..|++...
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~ 64 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI 64 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555556666666666655555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.9e-06 Score=69.36 Aligned_cols=108 Identities=7% Similarity=-0.070 Sum_probs=82.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHH
Q 007396 330 LEPDD-VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWR 406 (605)
Q Consensus 330 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 406 (605)
+.|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34433 35566667778888888888888887742 1335677778888888889999998888886 3344 455788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.+..++...|++++|+..+++++++.|.++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888899999999999999999999988876553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=69.87 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCH--
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL-MGRAGML-- 386 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 386 (605)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+...... +.+...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877642 2355677888888888999999999998887422 2356677777777 7788988
Q ss_pred HHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 387 GEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 387 ~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
++|...+++. ...|+ ...|..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998887 33454 56888888899999999999999999999999876543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.6e-05 Score=61.18 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 007396 335 VVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 335 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 412 (605)
..+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455556666667777777777766632 1224566666677777777777777777665 2333 455777777888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNM 445 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 445 (605)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888888777666555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00077 Score=65.44 Aligned_cols=174 Identities=11% Similarity=-0.037 Sum_probs=101.6
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHhccC-ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc-
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPE-ESILVSVLSACTHLG-ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC- 281 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~- 281 (605)
....+.+..++|+++++++... .|+ ...++.--..+...+ .++++..+++.++... +.+..+|+.-...+.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhc
Confidence 3334445556777777777764 343 333444444444455 4677777777776655 33566666666666665
Q ss_pred C-CHHHHHHHHhccCCCC---eeeHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 007396 282 G-CLEKGLCLFRMMADKC---QLTYSVMISGLAMHGQGK--------EALSIFSEMLREGLEPDDVVYVGVLSACSHAGL 349 (605)
Q Consensus 282 g-~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 349 (605)
+ ++++++++++.+.+.| ..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccc
Confidence 5 6778888888777544 345555444444444444 77777777777532 255666666666666554
Q ss_pred -------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 350 -------VNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 350 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
++++.++++.+... -+-|...|+.+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666631 12345556555555555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.3e-05 Score=63.43 Aligned_cols=110 Identities=7% Similarity=-0.110 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRS 407 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 407 (605)
...+..+...+...|++++|...|+... ...|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555666666666666666655 22344 455666666677777777777777665 3334 4557777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+..++...|++++|...++++.+.+|.+...+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 788888888999999999999888888776665555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=66.63 Aligned_cols=93 Identities=3% Similarity=-0.082 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hHHHH
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS-------DYVLL 442 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l 442 (605)
.+.-+...+.+.|++++|++.|++. .+.|+ ...|..+..+|...|++++|+..++++++++|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455666677777777777777765 34443 457777888888888888888888888887766443 56667
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 007396 443 SNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888887765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00056 Score=66.08 Aligned_cols=193 Identities=9% Similarity=-0.037 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC--CHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCC-HHHHHHHH
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG--CLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQ-GKEALSIF 322 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 322 (605)
++.+..+++.+.... +-+..+|+.-...+.+.| ++++++.+++.+. .+|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445556666666554 335666666666666666 3677777777665 3345566666656666666 47777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-----
Q 007396 323 SEMLREGLEPDDVVYVGVLSACSHA--------------GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRA----- 383 (605)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 383 (605)
.++.+..+. |...|+.....+.+. +.++++.+++...... -+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 777765322 444554444333332 3466677777766631 123455555554444444
Q ss_pred ------CCHHHHHHHHHHC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 384 ------GMLGEALELIQSM-PIQQNDVVWRSLLSA-----SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 384 ------g~~~~A~~~~~~m-~~~p~~~~~~~ll~a-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+.++++++.++++ ...||. .|..+-.+ ....|..++....+.++.+++|...+-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3466777777666 445654 34322221 12346666777778888888877666665554433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-05 Score=63.16 Aligned_cols=98 Identities=7% Similarity=0.001 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567778888999999999999999987 3334 5668888999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 007396 447 ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|.+.+++..+.+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=66.55 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 413 (605)
.+..+...+...|++++|...|+..... -+.+...|..+...|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556677778888888888877732 1235667777778888888888888888776 3334 3457778888889
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLL 442 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 442 (605)
..|++++|...+++++++.|.++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999988777655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.5e-05 Score=66.77 Aligned_cols=108 Identities=9% Similarity=-0.056 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSA 411 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a 411 (605)
...+..+...+...|++++|...|+...+. .+.+...|..+...|.+.|++++|.+.|++. .+.|+ ...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666667777788888888888877742 1235677778888888888888888888876 44454 5688899999
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+...|++++|+..++++++++|+++..+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999888654443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.8e-05 Score=63.90 Aligned_cols=108 Identities=7% Similarity=-0.108 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASK 413 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~ 413 (605)
.+..+...+...|++++|...|+...+. .+.+...|..+...|.+.|++++|.+.+++. ...|+ ...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666677777777777766632 1234566777777777777777777777765 33443 557777888888
Q ss_pred hcCChHHHHHHHHHHHhhC------CCCCchHHHHHHH
Q 007396 414 VHHNLEIGEIAAKNLFQIN------SHHPSDYVLLSNM 445 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 445 (605)
..|++++|...++++++++ |.+......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888888 6655555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0018 Score=62.91 Aligned_cols=174 Identities=13% Similarity=0.017 Sum_probs=123.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC-C
Q 007396 104 RGFVKEVEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQ-ALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKC-E 180 (605)
Q Consensus 104 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g 180 (605)
....+.+..++|+++++.++.. .|+.. .|+.--..+...+ ++++++.+++.+++..++ +..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 3344455667899999999885 45544 4666666666677 599999999999988755 777888777777766 6
Q ss_pred -CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChh--------HHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 181 -KVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWS--------ECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 181 -~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
+.++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...++.-.....+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccc
Confidence 888999999988764 5567776555555555555 8899999888865 5567777777777666665
Q ss_pred -------hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCC
Q 007396 249 -------LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGC 283 (605)
Q Consensus 249 -------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 283 (605)
++++.+....++... +-|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 466666666666665 4466777666666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=6e-05 Score=65.13 Aligned_cols=64 Identities=5% Similarity=-0.026 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
...|..+..++...|+++.|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3478888888899999999999999999999999999999999999999999999999888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.2e-05 Score=75.86 Aligned_cols=163 Identities=6% Similarity=-0.113 Sum_probs=108.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCC-hHH
Q 007396 302 YSVMISGLAMHGQGKEALSIFSEMLREG-LEPDDV----VYVGVLSACSHAGLVNEGLLCFDRMKLE---YRIVPT-VQH 372 (605)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 372 (605)
+..+...|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+++..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567777888888888888877765421 112221 2222233344567888888887776531 122222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC---CC----Cc
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS---HH----PS 437 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~----~~ 437 (605)
+..+...|...|++++|..++++. .-+|. ..++..++..|...|++++|...++++....+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888888999999998888765 11232 23777888889999999999999988876532 21 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+..++..+...|++++|.+.+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888999999887776643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-05 Score=65.58 Aligned_cols=62 Identities=8% Similarity=-0.053 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQI-------NSHHPSDY----VLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888999999999999999999999 99988888 99999999999999999999988763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=63.35 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQND----VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH---PSDYVLLSNMYA 447 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 447 (605)
+...+.+.|++++|.+.|++. ...|+. ..+..+..++...|++++|...++++.+..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344556667777777766665 222322 356666667777788888888888887777776 556777777888
Q ss_pred HcCChhHHHHHHHHHHhC
Q 007396 448 RAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~ 465 (605)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888777664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.97 E-value=8.3e-06 Score=66.28 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHC-CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 383 AGMLGEALELIQSM-PI---QQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
.|++++|...|++. .. .|+ ...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666666666665 33 243 33677777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 007396 458 IRTEMASK 465 (605)
Q Consensus 458 ~~~~m~~~ 465 (605)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.6e-05 Score=62.95 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 007396 333 DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLS 410 (605)
Q Consensus 333 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 410 (605)
+...+..+...+...|++++|...|+..... .+.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666667777777777777777776632 1234566777777777788888887777766 3334 4557888888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCC
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
++...|++++|+..++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.3e-05 Score=76.92 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|.+...+..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466777888888999999999988886 3444 46688899999999999999999999999999999999999999999
Q ss_pred HcCChhHHHH-HHHHHHh
Q 007396 448 RAQRWYDVAK-IRTEMAS 464 (605)
Q Consensus 448 ~~g~~~~a~~-~~~~m~~ 464 (605)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988764 4455543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-05 Score=62.34 Aligned_cols=95 Identities=7% Similarity=0.063 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH-------PSDYVL 441 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 441 (605)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.+ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777777888888888888776 2233 45678888888888999999999999998887765 678889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 007396 442 LSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998874
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.4e-05 Score=81.00 Aligned_cols=116 Identities=7% Similarity=-0.024 Sum_probs=79.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|.+.|++..+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344566667777766666632 1223566667777777777777777777665 3444 34577788888888888888
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHH--HHHcCChhHHHHHHH
Q 007396 421 GEIAAKNLFQINSHHPSDYVLLSNM--YARAQRWYDVAKIRT 460 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 460 (605)
|+..++++++.+|.++..+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888887777777 778888888888876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.92 E-value=9e-05 Score=76.63 Aligned_cols=119 Identities=8% Similarity=-0.044 Sum_probs=66.3
Q ss_pred hHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 007396 272 TSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHA 347 (605)
Q Consensus 272 ~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 347 (605)
..+...|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344455666677777777776553 223556666666677777777777777766663 33 345566666666666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL--MGRAGMLGEALELIQ 394 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 394 (605)
|++++|.+.|++..+...- +...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777766666532111 22233333333 555666666666665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.5e-05 Score=59.29 Aligned_cols=98 Identities=16% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC---CHHHHHHHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ---NDVVWRSLLSAS 412 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~a~ 412 (605)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444455555555555555555421 1223445555556666666666666666554 2233 345666777777
Q ss_pred Hhc-CChHHHHHHHHHHHhhCCCCC
Q 007396 413 KVH-HNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 413 ~~~-g~~~~a~~~~~~~~~~~~~~~ 436 (605)
... |+.++|.+.++++.+..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 777777777777777776543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=72.05 Aligned_cols=160 Identities=9% Similarity=-0.089 Sum_probs=74.9
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQK---SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
.+......|+++.+.+.++.-.+. ....|..+...+.+.|++++|+..|++..... |+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IHTEEWDDQ--------I 78 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TTCTTCCCH--------H
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcccccchh--------h
Confidence 334445566666666666543321 33467777788888899999999988887642 221100000 0
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
.. .........++..+..+|.+.|++++|...|+... ..+...|..+..+|...|++++|...|++.
T Consensus 79 ~~----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 79 LL----------DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00 00000012344455555555555555555555443 223445555556666666666666666666
Q ss_pred HHcCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 007396 326 LREGLEP-DDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 326 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
.+. .| +...+..+..++...++.+++.
T Consensus 149 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 553 23 2334444444444444444444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00012 Score=62.38 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM----PIQQN----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH------HPS 437 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~------~~~ 437 (605)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++..+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555556665555555543 00111 235666666777788888888888877765321 234
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 438 DYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+..++..|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888889999999999998887764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-05 Score=61.73 Aligned_cols=107 Identities=7% Similarity=-0.042 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC----CCC----HHHHHH
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI----QQN----DVVWRS 407 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 407 (605)
+..+...+...|++++|..+|+..... .+.+...+..+...|.+.|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555421 1223445555555555666666666655554 11 122 446667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 408 LLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 408 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+..++...|++++|...++++.+..| ++.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77777788888888888888888777 455444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00021 Score=70.19 Aligned_cols=119 Identities=8% Similarity=-0.138 Sum_probs=67.4
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHHHcCCCHHHHHHHHHhcCC---
Q 007396 132 FTFPALFKACAKLQALKEGMQIHGHVFKVGFECD--------------LFVQNSLINMYGKCEKVEFASAIFKQMDQ--- 194 (605)
Q Consensus 132 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 194 (605)
..+..+...+...|++++|...|+.+++...... ..++..+..+|.+.|++++|...|++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455566666667777777777777766643321 35555566666666666666666655432
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhH
Q 007396 195 KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLG 252 (605)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a 252 (605)
.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 244556666666666666666666666665532 22334444444444445554444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00022 Score=58.73 Aligned_cols=97 Identities=10% Similarity=0.010 Sum_probs=49.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC------C----hhHHHHHH
Q 007396 135 PALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQK------S----VASWSAII 204 (605)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~------~----~~~~~~li 204 (605)
..+...+.+.|++++|...|+++++..+. +...|+.+..+|.+.|++++|.+.|++..+- + ..+|..+.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444445555555555555444322 3444445555555555555555555443310 0 12455556
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCChhH
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPEESI 235 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t 235 (605)
..+...|++++|++.|++... ..||..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~---~~~~~~~ 118 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS---EFRDPEL 118 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hCcCHHH
Confidence 666677777777777776655 3455443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00025 Score=72.99 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=97.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-HHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYR--IVPT----VQHYGCVVDLMGRAGMLGEALELIQSM---------PIQQNDV-VWR 406 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~ 406 (605)
.+...|++++|..++++...... +.|+ ..+++.|..+|...|++++|..++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577899999888877664322 2232 467888889999999999998888765 3456554 889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh-----hCCCCCch---HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 407 SLLSASKVHHNLEIGEIAAKNLFQ-----INSHHPSD---YVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 407 ~ll~a~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.|...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 36776654 4578888899999999999999998743
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=62.18 Aligned_cols=97 Identities=13% Similarity=0.017 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HH
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DV 403 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~ 403 (605)
++..+...+...|++++|..+++.......-.++ ...+..+...+...|++++|.+.+++. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555554321110111 234455555666666666666665544 11111 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQIN 432 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 432 (605)
.+..+...+...|+.++|...+++..+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666677778888888888888777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0032 Score=60.79 Aligned_cols=180 Identities=11% Similarity=0.022 Sum_probs=129.5
Q ss_pred HHHHHHHHhccC---CCCeeeHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 007396 284 LEKGLCLFRMMA---DKCQLTYSVMISGLAMHG--QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGL-VNEGLLCF 357 (605)
Q Consensus 284 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 357 (605)
+++++.+++.+. .++..+|+.-.-.+...| .+++++.++.++.+... -|...|+.-.-.+...|. .+++.+++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567778887765 446678888777777777 48999999999998643 256677766666777787 69999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc------
Q 007396 358 DRMKLEYRIVPTVQHYGCVVDLMGRA--------------GMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH------ 415 (605)
Q Consensus 358 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 415 (605)
+.+... . +-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH-C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999853 2 34566676666665554 4578888888876 3344 566887665555444
Q ss_pred -----CChHHHHHHHHHHHhhCCCCCchHHHHHHHH---HHcCChhHHHHHHHHHHhCC
Q 007396 416 -----HNLEIGEIAAKNLFQINSHHPSDYVLLSNMY---ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 416 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.++++++.++++++.+|++.-.+..++... ...|..+++...+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999998865554443322 24577888889999888744
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=72.71 Aligned_cols=135 Identities=10% Similarity=0.004 Sum_probs=97.9
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVP-TVQHYGCVVDL 379 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 379 (605)
.|..+...+.+.|++++|+..|++..+. .|+. ......+++ . ...| +...|..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~-------~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG-------A---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH-------G---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHH-------H---HHHHHHHHHHHHHHHH
Confidence 4566666677777777777777766541 0000 000001110 0 1112 35678888889
Q ss_pred HHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHH
Q 007396 380 MGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
|.+.|++++|.+.+++. ...|+ ...|..+..++...|++++|+..++++++++|.+...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 55664 55888899999999999999999999999999999999999999998888877754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00038 Score=57.02 Aligned_cols=99 Identities=5% Similarity=-0.172 Sum_probs=59.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHh
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN----DVVWRSLLSASKV 414 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~ 414 (605)
...+...|++++|...|+.+.....-.+. ...+..+...+.+.|++++|...|++. ...|+ ...+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34445556666666666665532111110 135555666666677777777666665 22233 3456667777788
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchH
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.|+.++|...++++.+..|+++...
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHH
Confidence 8888888888888888888765443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=8.5e-05 Score=60.64 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=53.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCC
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHN 417 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 417 (605)
+...+...|++++|...|+...+. -+.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344455566666666666665531 1224455555666666666666666666655 3334 34466666667777777
Q ss_pred hHHHHHHHHHHHhhCCCC
Q 007396 418 LEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~ 435 (605)
.++|+..++++++.+|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777777777777776653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.75 E-value=6.9e-05 Score=63.56 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC--------CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM--------PIQQNDV-VW----RSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
.|..+..++.+.|++++|+..+++. .+.|+.. .| .....++...|++++|+..|++.++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555666666666665555544 3478765 88 899999999999999999999999999987765
Q ss_pred HH
Q 007396 439 YV 440 (605)
Q Consensus 439 ~~ 440 (605)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0006 Score=69.33 Aligned_cols=157 Identities=8% Similarity=-0.029 Sum_probs=113.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 007396 308 GLAMHGQGKEALSIFSEMLREGLEPD----------------DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQ 371 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 371 (605)
.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45667777777777777766422111 12467788999999999999999998875433333322
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------
Q 007396 372 ----HYGCVVDLMGRAGMLGEALELIQSM-------PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS------ 433 (605)
Q Consensus 372 ----~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~------ 433 (605)
+.+.+-..+...|+.++|.+++++. +..+. ..++..|...+...|++++|...++++...-.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2333344445678899998888765 22333 34788889999999999999999999876521
Q ss_pred CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 434 HHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
.....+..++.+|...|++++|..++++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1235788999999999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=4e-05 Score=75.44 Aligned_cols=147 Identities=9% Similarity=-0.031 Sum_probs=76.0
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 300 LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
..|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+ . ...|..+...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 3466666677778888888888888776 3444432 22233333332221 1 1366777888
Q ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-HcCChhHHH
Q 007396 380 MGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA-RAQRWYDVA 456 (605)
Q Consensus 380 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 456 (605)
|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|.++..+..|..+.. ..+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 3444 45688888888888899999999999988888888888777777743 445667777
Q ss_pred HHHHHHHhCC
Q 007396 457 KIRTEMASKG 466 (605)
Q Consensus 457 ~~~~~m~~~~ 466 (605)
++++.|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 7777776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.6e-05 Score=62.38 Aligned_cols=91 Identities=9% Similarity=-0.031 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007396 347 AGLVNEGLLCFDRMKLEYR--IVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 347 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~ 422 (605)
.|++++|...|++..+ .+ -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666766662 11 1123456666777777777777777777776 3334 3457777777888888888888
Q ss_pred HHHHHHHhhCCCCCch
Q 007396 423 IAAKNLFQINSHHPSD 438 (605)
Q Consensus 423 ~~~~~~~~~~~~~~~~ 438 (605)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888876654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=62.78 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
...|..+..+|.+.|++++|...+++. .+.|+ ...|..+..++...|++++|...++++++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 456777888888999999999888876 44454 55888899999999999999999999999999876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=71.59 Aligned_cols=152 Identities=9% Similarity=-0.002 Sum_probs=81.0
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHA 347 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (605)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888999999999999999998653221111 1223334444433221 13677788888899
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHH-HHhcCChHHHHHH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSA-SKVHHNLEIGEIA 424 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a-~~~~g~~~~a~~~ 424 (605)
|++++|...++..... -+.+...|..+..+|...|++++|.+.|++. .+.|+.. .+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988742 1335778888999999999999999999987 5666544 45544444 2445677888889
Q ss_pred HHHHHhhCCCCC
Q 007396 425 AKNLFQINSHHP 436 (605)
Q Consensus 425 ~~~~~~~~~~~~ 436 (605)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00032 Score=54.86 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+...|..+..++...|++++|+..++++++.+|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45688889999999999999999999999999999999999999999999999999999988763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=57.67 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 388 EALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 388 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 4445 45688888888999999999999999999999998889999999999999999999999988763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=56.89 Aligned_cols=91 Identities=10% Similarity=-0.077 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH------PSDYV 440 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 440 (605)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456667777888888888888888776 3344 45688888889999999999999999999999987 66677
Q ss_pred HHHHHHHHcCChhHHHHHH
Q 007396 441 LLSNMYARAQRWYDVAKIR 459 (605)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~ 459 (605)
.+..++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777766665443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00056 Score=67.98 Aligned_cols=114 Identities=3% Similarity=-0.103 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007396 334 DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQ-NDVVWRSLLSAS 412 (605)
Q Consensus 334 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~a~ 412 (605)
...+..+...+...|++++|...|++..+.. +. .......+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888776310 00 00001111111 1223 345888899999
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 413 KVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 413 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|++++|+..++++++++|.++..|..++.+|...|++++|.+.+++..+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999988743
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00054 Score=51.94 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666667777778888888777765 2333 45577788888888899999999999998888888888888887776
Q ss_pred HcC
Q 007396 448 RAQ 450 (605)
Q Consensus 448 ~~g 450 (605)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=70.91 Aligned_cols=65 Identities=3% Similarity=-0.094 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|..+..++.+.|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46888899999999999999999999999999999999999999999999999999999998754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0037 Score=65.85 Aligned_cols=168 Identities=14% Similarity=-0.002 Sum_probs=127.8
Q ss_pred HHHHHHHHhccCC---CCeeeHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--
Q 007396 284 LEKGLCLFRMMAD---KCQLTYSVMISGLAMHGQ----------GKEALSIFSEMLREGLEPDDVVYVGVLSACSHAG-- 348 (605)
Q Consensus 284 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 348 (605)
-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 4567777776652 234567766666666666 88999999999875322 4567777777778888
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc----------
Q 007396 349 LVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAG-MLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH---------- 415 (605)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---------- 415 (605)
+++++.++++.+.+. -+-+-..|+.-..++.+.| ..+++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999852 2345677777777778888 889999999888 5555 566888887776653
Q ss_pred ----CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhH
Q 007396 416 ----HNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYD 454 (605)
Q Consensus 416 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (605)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=62.11 Aligned_cols=86 Identities=5% Similarity=-0.024 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHN----------LEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445667777777665 3344 34466666666665554 5699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 007396 449 AQ-----------RWYDVAKIRTEMASKG 466 (605)
Q Consensus 449 ~g-----------~~~~a~~~~~~m~~~~ 466 (605)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999998854
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0024 Score=48.95 Aligned_cols=68 Identities=7% Similarity=0.013 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 400 QNDVVWRSLLSASKVHHN---LEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
+|...+..+..++...++ .++|..+++++++.+|+++.....++..+...|++++|...|+++.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777755544 79999999999999999999999999999999999999999999998654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=52.18 Aligned_cols=66 Identities=5% Similarity=-0.076 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 401 NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 401 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999998754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0028 Score=65.09 Aligned_cols=124 Identities=11% Similarity=-0.056 Sum_probs=87.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCC---H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHH
Q 007396 308 GLAMHGQGKEALSIFSEMLRE---GLEPD---D-VVYVGVLSACSHAGLVNEGLLCFDRMKLEY--RIVPT----VQHYG 374 (605)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~ 374 (605)
.+...|++++|+.++++.++. -+-|+ . .+++.|..+|...|++++|..++++...-+ -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456788888888888877652 12232 2 478888888889999999988888765311 12222 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 007396 375 CVVDLMGRAGMLGEALELIQSM---------PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQI 431 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 431 (605)
.|..+|...|++++|+.++++. +-.|+.. +.+.|-.++...+.+++|+.+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888775 2345444 4455556677888899999999888653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=66.44 Aligned_cols=116 Identities=10% Similarity=0.091 Sum_probs=87.5
Q ss_pred HHHHHhcCCHHHHHHHHHHC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCCC---ch
Q 007396 377 VDLMGRAGMLGEALELIQSM---------PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQI-----NSHHP---SD 438 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~ 438 (605)
+..+.+.|++++|++++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|.+| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778999998888765 122333 38889999999999999999999998754 45554 45
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccceEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 007396 439 YVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSLVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLK 510 (605)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 510 (605)
++.|+.+|...|++++|..++++..+.-.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999988752110 112358999999888888777765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0069 Score=50.36 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKV----HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 466 (605)
...+..|...|.. .+|.++|...+++..+.+ ++..+..|..+|.. .++.++|.+.+++..+.|
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 3344444444444 455666666666665542 35556666666666 666666666666666655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0068 Score=50.40 Aligned_cols=108 Identities=9% Similarity=-0.120 Sum_probs=53.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHh----cCCHHHH
Q 007396 212 LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVK----CGCLEKG 287 (605)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A 287 (605)
++++|++.|++..+.| .|+.. +...+...+.++.|.+.+....+.| +...+..|..+|.. .++.++|
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4566666776666655 33333 4444445555555666666666554 34444555555554 4455555
Q ss_pred HHHHhccCC-CCeeeHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 007396 288 LCLFRMMAD-KCQLTYSVMISGLAM----HGQGKEALSIFSEMLRE 328 (605)
Q Consensus 288 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 328 (605)
.++|++..+ .++..+..|...|.. .++.++|...|++..+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555544332 233334444444444 44444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.003 Score=47.61 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|..+...+...|++++|+..++++.+.+|.++..+..++.+|...|++++|.+.+++..+.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44788888899999999999999999999999999999999999999999999999999988743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0014 Score=66.20 Aligned_cols=82 Identities=10% Similarity=-0.008 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCCC---chHHHHHH
Q 007396 383 AGMLGEALELIQSM---------PIQQNDV-VWRSLLSASKVHHNLEIGEIAAKNLFQI-----NSHHP---SDYVLLSN 444 (605)
Q Consensus 383 ~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~ 444 (605)
.|++++|+.++++. +..|+.. +++.|..+|...|++++|+.+++++++. +|+++ .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46778888777664 2334443 8899999999999999999999998854 56555 45788999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 007396 445 MYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~ 464 (605)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0047 Score=49.26 Aligned_cols=80 Identities=9% Similarity=-0.025 Sum_probs=50.4
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 353 GLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 353 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
+...|+...+ .-+.+...+..+...|.+.|++++|...|++. ...| +...|..+..++...|+.++|...++++.+
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555542 11224556666666677777777777777665 2333 344677777777778888888888888777
Q ss_pred hCCC
Q 007396 431 INSH 434 (605)
Q Consensus 431 ~~~~ 434 (605)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.056 Score=56.77 Aligned_cols=171 Identities=9% Similarity=-0.057 Sum_probs=121.7
Q ss_pred CCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHccCC----------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 007396 110 VEFEEALFLYNEMFERGVEPDNF-TFPALFKACAKLQA----------LKEGMQIHGHVFKVGFECDLFVQNSLINMYGK 178 (605)
Q Consensus 110 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (605)
...++|++.++++.+. .|+.+ .|+.--.++...++ ++++...++.+++..++ +..+|+.-...+.+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3346789999998885 45544 45555555555555 88899999999888755 77788888888888
Q ss_pred CC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc------
Q 007396 179 CE--KVEFASAIFKQMDQ---KSVASWSAIIAAHASNG-LWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL------ 246 (605)
Q Consensus 179 ~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~------ 246 (605)
.| +++++.+.++++.+ +|..+|+.-...+.+.| .++++++.++++.+.. +-|...|.....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhcccccc
Confidence 88 67999999988764 56678888877788888 8889999998888754 44666666655554442
Q ss_pred --------CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHH
Q 007396 247 --------GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEK 286 (605)
Q Consensus 247 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 286 (605)
+.++++.+.+..++... +-|...|+-+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 34567777777777665 3466777777777766665333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0013 Score=55.61 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhhCCCCC
Q 007396 386 LGEALELIQSM-PIQQN-DVVWRSLLSASKVH-----------HNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 436 (605)
+++|...|++. .+.|+ ...|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 45666666665 44554 34677777777665 589999999999999999864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.01 Score=59.93 Aligned_cols=93 Identities=18% Similarity=0.058 Sum_probs=69.9
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-HHHHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEY--RIVPT----VQHYGCVVDLMGRAGMLGEALELIQSM---------PIQQNDV-VWRSLL 409 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 409 (605)
+.|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765422 22332 367888888888999999888888765 3456655 899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhh-----CCCCCch
Q 007396 410 SASKVHHNLEIGEIAAKNLFQI-----NSHHPSD 438 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 438 (605)
..|...|++++|+.++++++++ ||++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999998764 6776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.12 Score=56.86 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=107.7
Q ss_pred HHHHhCCCchHHHH-HHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 104 RGFVKEVEFEEALF-LYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 104 ~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
......+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+ +.. .-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 33455788888876 44221 112233667777788888888887553 111 113456778999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 183 EFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 183 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+....+-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999988774 568999999999999999999999998743 233444444466666555554444444
Q ss_pred cCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHH
Q 007396 263 ISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSE 324 (605)
Q Consensus 263 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (605)
| -++.-..+|.++|++++|.+++. +.+++++|..+-+.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 3 12334445666777777766644 44666666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.016 Score=48.36 Aligned_cols=91 Identities=10% Similarity=0.059 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccc
Q 007396 400 QNDVVWRSLLSASKVHH---NLEIGEIAAKNLFQIN-S-HHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFS 474 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 474 (605)
++..+.-.+..++.+.+ +.++|+.+++.+.+.+ | .+...+..|+-+|.+.|++++|.+.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 56666666777777777 6679999999999988 6 356778889999999999999999999998733
Q ss_pred eEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCccc
Q 007396 475 LVEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYSP 516 (605)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 516 (605)
|...++..+.+.+.+.+++.|++-
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 334556666666667888887653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.018 Score=58.21 Aligned_cols=100 Identities=11% Similarity=-0.030 Sum_probs=74.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHC---------CCCCCHH-H
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYR--IVPT----VQHYGCVVDLMGRAGMLGEALELIQSM---------PIQQNDV-V 404 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~ 404 (605)
+..+...|++++|..++++...... +.|+ ..+++.+..+|...|++++|+.++++. +..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4455667888888888887764221 2232 457788888888899999988888765 3455554 8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCCCchHH
Q 007396 405 WRSLLSASKVHHNLEIGEIAAKNLFQI-----NSHHPSDYV 440 (605)
Q Consensus 405 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~ 440 (605)
++.|...|...|++++|+.++++++++ ||++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 889999999999999999999998754 677765543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0035 Score=48.71 Aligned_cols=66 Identities=6% Similarity=-0.098 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..+++.+++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4556666777777777777777777765 3334 3447777777778888888888888887776543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.24 Score=39.75 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=96.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEA 389 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 389 (605)
.-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-+. ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHHH
Confidence 3456666666666666542 2333444444433344444444555554433222 2346777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 390 LELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 390 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
...+-.++ .+.......+......|+.++-.++...++..++.++.....++++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777764 245566777888899999999999999987777778899999999999999999999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0071 Score=46.54 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCc-hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 412 SKVHHNLEIGEIAAKNLFQINSHHPS-DYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 412 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+...|++++|+..++++.+.+|.++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555554444 455555555555555555555554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.022 Score=43.64 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQ-NDV-VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++.+|.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345567778888888888776 3344 455 788888888899999999999999999999887765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.058 Score=52.31 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCeeeHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCH
Q 007396 297 KCQLTYSVMISGLA--MHG---QGKEALSIFSEMLREGLEPDD 334 (605)
Q Consensus 297 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~ 334 (605)
.+...|...+.+.. ..+ ...+|..+|++..+ ..|+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~ 232 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEF 232 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCC
Confidence 35566666665533 223 24678888888887 45653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.089 Score=58.03 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=21.6
Q ss_pred HhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHH
Q 007396 279 VKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEM 325 (605)
Q Consensus 279 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 325 (605)
..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555444332 2234555555555555555555555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=1.4 Score=46.41 Aligned_cols=252 Identities=10% Similarity=0.013 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL 246 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~ 246 (605)
..-+.-+..+++.+++......+.. +..+...--....+....|+..+|....+.+-..| ......+..++..+.+.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHC
Confidence 3445566677788888888887766 33344444455666777888888888888877776 34445566666666655
Q ss_pred CChhhH--HHHHHHHHHhc-----------CCchH-HHHhHHHhHHHhcCCHHHHHHHHhccCCCCee---eHHHHHHHH
Q 007396 247 GALDLG--KCTHGSLIRNI-----------SALNV-IVETSLIDMYVKCGCLEKGLCLFRMMADKCQL---TYSVMISGL 309 (605)
Q Consensus 247 ~~~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~ 309 (605)
|.+... .+=+..+...| ++++. .....++..+.+-.. +....... .++.. .+...+.-+
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~-~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTT-GATDFTRQMAAVAFASV 225 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhcc-CCChhhHHHHHHHHHHH
Confidence 544321 11112222221 11111 111222222221111 11111111 11111 111122223
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007396 310 AMHGQGKEALSIFSEMLREGLEPDDVV----YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM 385 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 385 (605)
++ .+.+.|..+|....+.+ ..+... ...+.......+...++...+...... .++.....-.+..-.+.|+
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 33 36788888888876543 223322 222222333445344555556654421 2333334444444557788
Q ss_pred HHHHHHHHHHCCCCC-CHHHH-HHHHHHHHhcCChHHHHHHHHHHHh
Q 007396 386 LGEALELIQSMPIQQ-NDVVW-RSLLSASKVHHNLEIGEIAAKNLFQ 430 (605)
Q Consensus 386 ~~~A~~~~~~m~~~p-~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~ 430 (605)
++.|...|+.|+..+ +..-| -=+..+....|+.++|..+++++.+
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998885432 22222 2234466778888888888888865
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.046 Score=50.86 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=69.7
Q ss_pred HHHHHHHHHHC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHc-CChhH
Q 007396 386 LGEALELIQSM-PIQQN---DVVWRSLLSASKV-----HHNLEIGEIAAKNLFQINSH-HPSDYVLLSNMYARA-QRWYD 454 (605)
Q Consensus 386 ~~~A~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 454 (605)
..+|...+++. .+.|+ -..|..|...|.. -|+.+.|++.|++.++++|+ +..+++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666655 55666 4478888888877 49999999999999999997 499999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 007396 455 VAKIRTEMASKGLNQSPG 472 (605)
Q Consensus 455 a~~~~~~m~~~~~~~~~~ 472 (605)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999877653343
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.14 Score=49.73 Aligned_cols=133 Identities=7% Similarity=-0.042 Sum_probs=71.4
Q ss_pred CCCcchHHHHHHHHHcc-----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----cCC----C---HHHHHHHHHh
Q 007396 128 EPDNFTFPALFKACAKL-----QALKEGMQIHGHVFKVGFECDLFVQNSLINMYG----KCE----K---VEFASAIFKQ 191 (605)
Q Consensus 128 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g----~---~~~A~~~~~~ 191 (605)
+.|...|...+++.... .+..+|..+|+++++..+. ....+..+.-+|. ..+ . +..+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666677777655322 2346777888888777432 3344444333332 000 0 1111111111
Q ss_pred cC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcC
Q 007396 192 MD--QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNIS 264 (605)
Q Consensus 192 m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 264 (605)
+. ..+..+|.++...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.++.+.+..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 11 234555665555555567777777777776663 35655555555666666777777776666666543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0013 Score=65.15 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=112.3
Q ss_pred CChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH
Q 007396 79 GSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVF 158 (605)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (605)
++++.|.+.-++...| ..|..|..+..+.++..+|++.|-+. -|+..|..++.++.+.|.+++-...+....
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444444333 34556666666666666665544211 244455666666666666666555555444
Q ss_pred HhCCCCchhHHHHHHHHHHcCCCHHH----------------------------HHHHHHhcC-----------------
Q 007396 159 KVGFECDLFVQNSLINMYGKCEKVEF----------------------------ASAIFKQMD----------------- 193 (605)
Q Consensus 159 ~~g~~~~~~~~~~li~~y~~~g~~~~----------------------------A~~~~~~m~----------------- 193 (605)
+. ..++.+=+.|+-+|+|.+++.+ |.-+|..+.
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 33 2233444556666666655444 333333222
Q ss_pred -------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCc
Q 007396 194 -------QKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISAL 266 (605)
Q Consensus 194 -------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 266 (605)
..++.+|-.+-.+|...+.+.-|.-.--.+. +.|| -+..++.-|-..|-+++-..+++.-.... ..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rA 261 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RA 261 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence 1244456666666666555554433322222 1111 11223334445555555555554444211 23
Q ss_pred hHHHHhHHHhHHHhcCCHHHHHHHHhccC----CC-------CeeeHHHHHHHHHhcCCHHHHH
Q 007396 267 NVIVETSLIDMYVKCGCLEKGLCLFRMMA----DK-------CQLTYSVMISGLAMHGQGKEAL 319 (605)
Q Consensus 267 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~ 319 (605)
....++-|.-.|+|- +.++-.+.++.-. -| ....|.-++-.|.+-.+++.|.
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 466777777777775 3444444443222 11 2357888888888888887664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.082 Score=40.18 Aligned_cols=67 Identities=7% Similarity=-0.006 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 368 PTVQHYGCVVDLMGRAGM---LGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.++..+..+..++...++ .++|..++++. ...|+. ..+..+...+...|++++|+..++++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777754444 68888888877 455544 46667777888899999999999999998887
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=1.1 Score=38.34 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=59.7
Q ss_pred HHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHH
Q 007396 175 MYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKC 254 (605)
Q Consensus 175 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~ 254 (605)
....+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHH
Confidence 345678888888887766 3566788888888888888888888877543 2233333444455544444
Q ss_pred HHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhcc
Q 007396 255 THGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMM 294 (605)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 294 (605)
+-+.....| -++.-...+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333333333 1233334444556666666555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.15 Score=39.51 Aligned_cols=70 Identities=10% Similarity=-0.003 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-----P----IQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++.++.|+++.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 33444555555666666666555543 0 1123457888888999999999999999999999998766543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.59 E-value=1 Score=38.43 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=88.4
Q ss_pred CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 007396 77 HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGH 156 (605)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (605)
.+|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... |..+.-.|...|+.+.-..+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 789999999998877 4567899999999999999999999988642 55566666677888777666555
Q ss_pred HHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 007396 157 VFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEM 223 (605)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (605)
....| -+|.....+.-.|+++++.++|.+...... -+......|..+.|.++.+++
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 55454 134445556668999999999877654221 111222356677777777665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.37 Score=38.58 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhC-C-CCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 421 GEIAAKNLFQIN-S-HHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 421 a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
++.+++.+.+.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666665554 3 2334455566666666777777666666665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.78 E-value=2.2 Score=34.37 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=63.5
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
+||++......+-.+.. +..-.+.-+......|.-++-.+++..+... .+|++.....+..||.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 45566655555555433 3344566677888899999998998886544 47888888999999999999999999999
Q ss_pred HHHHhcCC
Q 007396 258 SLIRNISA 265 (605)
Q Consensus 258 ~~~~~~~~ 265 (605)
++.+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99888864
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.52 E-value=2.2e-05 Score=77.43 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc
Q 007396 167 FVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL 246 (605)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~ 246 (605)
.+|..|..++.+.|++.+|.+-| ++..|+..|..+|....+.|.+++-+..+...++.. -.| ..=+.++-+|++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RES--YVETELIFALAKT 129 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CST--TTTHHHHHHHHTS
T ss_pred cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccc--ccHHHHHHHHHhh
Confidence 44555555555555555554433 222344445555555555555555555554443322 122 2223445555555
Q ss_pred CChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007396 247 GALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEML 326 (605)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (605)
+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+. -|..|...+.+.|++..|.+.-++.
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArKA- 196 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA- 196 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTTC-
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 55444333221 2333333344444444455544444444432 1222222333333333333222111
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CC-CCCHHH
Q 007396 327 REGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PI-QQNDVV 404 (605)
Q Consensus 327 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~ 404 (605)
-+..||-.+-.+|...+.+.-|...--.+. ..+.....++..|-+.|.+++-..+++.. +. +....+
T Consensus 197 -----ns~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 197 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp -----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred -----CChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 122345555555555554444433322222 11111222344455555555555555443 22 233445
Q ss_pred HHHHHHHHHhc
Q 007396 405 WRSLLSASKVH 415 (605)
Q Consensus 405 ~~~ll~a~~~~ 415 (605)
+.-|.-.|++.
T Consensus 266 FTELaILYsKY 276 (624)
T 3lvg_A 266 FTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 55554444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.35 Score=40.24 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 368 PTVQHYGCVVDLMGRAG---MLGEALELIQSM-PIQ-Q--NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
++..+.-.+.-++.+.+ +++++..++++. ... | +...+-.|.-++.+.|+++.|.+.++.+++.+|++...
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444444444 333555555444 111 3 23355566667899999999999999999999986544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.02 E-value=3.1 Score=33.88 Aligned_cols=90 Identities=4% Similarity=-0.057 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCCccce
Q 007396 400 QNDVVWRSLLSASKVHH---NLEIGEIAAKNLFQINSH-HPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQSPGFSL 475 (605)
Q Consensus 400 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 475 (605)
|+..+--.+..++.+.. +..+++.+++.+.+.+|. .......|+-+|.+.|++++|.++.+.+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e--------- 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--------- 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---------
Confidence 44444333444444443 456788899998888875 34456678889999999999999999988743
Q ss_pred EEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCcc
Q 007396 476 VEVARKVYKFVSQDRSHPAWDNIYEMIHQMEWQLKFEGYS 515 (605)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 515 (605)
|...++.++-+.+.++|.+.|++
T Consensus 108 -----------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 -----------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 34456666666666788888864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=1.8 Score=40.18 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhccC--CC--CeeeHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 007396 282 GCLEKGLCLFRMMA--DK--CQLTYSVMISGLAMH-GQGKEALSIFSEMLREGLE 331 (605)
Q Consensus 282 g~~~~A~~~f~~m~--~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~ 331 (605)
|+.++|.+.|++.. .| +..++......++.. |+.+++.+.+++.+.....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45555555554433 12 233444444444442 5555555555555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.59 Score=38.46 Aligned_cols=56 Identities=2% Similarity=-0.136 Sum_probs=42.4
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 007396 414 VHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLNQ 469 (605)
Q Consensus 414 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 469 (605)
..+|.++|.++|+.+.+....-+..+...+..-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34788999999999988744444556666666678999999999999888866543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.28 E-value=1.2 Score=47.86 Aligned_cols=54 Identities=6% Similarity=-0.022 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 463 (605)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346778999999999999999999999999999999999999999999998874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.82 E-value=0.85 Score=35.13 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQIN-------SHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
..-+-.|...+...|+++.|..-++++++.. +..+..+..|+.+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4445677888899999999999999988753 234567889999999999999999999999864
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.38 E-value=2.5 Score=31.78 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
...++|.-|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 457778888777776654 333333334567789999999999999999999999888764 6688888888887887
Q ss_pred hCCCCCCChhHHH
Q 007396 225 NEKCWRPEESILV 237 (605)
Q Consensus 225 ~~g~~~p~~~t~~ 237 (605)
.+| .|....|.
T Consensus 97 ~sg--~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ--DPRIQTFV 107 (116)
T ss_dssp TCC--CHHHHHHH
T ss_pred hCC--CHHHHHHH
Confidence 777 55555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.09 E-value=2.3 Score=31.88 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 007396 145 QALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMN 224 (605)
Q Consensus 145 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (605)
...++|.-|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456778888777776654 333333344567789999999999999999999999887654 7888888888888888
Q ss_pred hCCCCCCChhHHHH
Q 007396 225 NEKCWRPEESILVS 238 (605)
Q Consensus 225 ~~g~~~p~~~t~~~ 238 (605)
.+| .|....|..
T Consensus 96 ~sg--~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS--DPALADFAA 107 (115)
T ss_dssp TCS--SHHHHHHHH
T ss_pred hCC--CHHHHHHHH
Confidence 887 565555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.61 E-value=3.6 Score=33.85 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHHHCCCh------hHHHHHHHHHHhCCCCCCChhH----HHHHHH---HHhccCChhhHHHHHHHHH
Q 007396 194 QKSVASWSAIIAAHASNGLW------SECLKLFGEMNNEKCWRPEESI----LVSVLS---ACTHLGALDLGKCTHGSLI 260 (605)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~p~~~t----~~~ll~---a~~~~~~~~~a~~~~~~~~ 260 (605)
..|..+|-..+...-+.|+. ++..++|++.... ++|+... |.-+.- .+...++++.|+++|+.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45777888888888888888 7888888887764 5675421 111100 0122356677777776666
Q ss_pred HhcCCchHHHHhHHHhHHHhcCCHHHHHHH
Q 007396 261 RNISALNVIVETSLIDMYVKCGCLEKGLCL 290 (605)
Q Consensus 261 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 290 (605)
+.+ .--..+|......-.+.|+++.|.++
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkI 116 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQL 116 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 542 21234443333333333443333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.51 E-value=3.8 Score=32.69 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHhcCCHHH---HHHHHHHC-CCC-C-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 368 PTVQHYGCVVDLMGRAGMLGE---ALELIQSM-PIQ-Q-ND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p-~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
|+..+--.+.-++.+..+..+ +..++++. ... | +. ...-.|.-++.+.|+++.|.+.++.+++.+|.|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 444444445555555555444 55555554 212 3 11 2344455678899999999999999999999875543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.88 E-value=1.9 Score=34.68 Aligned_cols=48 Identities=4% Similarity=0.033 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 417 NLEIGEIAAKNLFQINSH-HPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 417 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
+...|+.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455677888888877764 345566777888888888888888888776
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.38 E-value=25 Score=33.11 Aligned_cols=168 Identities=7% Similarity=-0.017 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHH----HHHHHhCCCCCCChhHHHHHHHHH
Q 007396 168 VQNSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKL----FGEMNNEKCWRPEESILVSVLSAC 243 (605)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~p~~~t~~~ll~a~ 243 (605)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+ ++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3444555678888888888886442 3345566766555543 44445556 788887777777766
Q ss_pred hccCChh-hHHHHHHHHH----Hhc--CCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhc---C
Q 007396 244 THLGALD-LGKCTHGSLI----RNI--SALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMH---G 313 (605)
Q Consensus 244 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g 313 (605)
.....-+ .-..+.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533222 1223333333 332 2236777888899999999999999887633222344444444333332 3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 362 (605)
...++-- ..-.+++ -|...|++..|..+|+...+
T Consensus 183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3333211 1112222 24456888888888887664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.96 E-value=2.6 Score=41.52 Aligned_cols=69 Identities=12% Similarity=0.035 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCCCCCc
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA-----SKGLNQSPG 472 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 472 (605)
....++.++...|+.+++...++.+...+|-+...|..|+.+|.++|+..+|.+.|+... +.|+.|.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344566777888999999999999999999988899999999999999999999888765 358877554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.82 E-value=6.3 Score=29.80 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDL 379 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 379 (605)
+.-+..+-+..+....+.|+.....+.|.||-+.+++..|.++|+.++.+.| +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556677777777778899999999999999999999999999999886544 335567776643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.21 E-value=7.1 Score=32.73 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=13.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 007396 336 VYVGVLSACSHAGLVNEGLLCFDRM 360 (605)
Q Consensus 336 t~~~ll~a~~~~g~~~~a~~~~~~~ 360 (605)
++..+..++...|.+.+|...|++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444445555556666666655554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.03 E-value=60 Score=35.69 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007396 82 DYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFE 124 (605)
Q Consensus 82 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 124 (605)
..+.++|.+++.| -|..++....+-++.+.+.++|..+..
T Consensus 219 r~l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 219 RKSFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466666666543 466777777888888888888888763
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.01 E-value=44 Score=38.10 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC----Ce---------------
Q 007396 239 VLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK----CQ--------------- 299 (605)
Q Consensus 239 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~--------------- 299 (605)
++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 333444445555444433221 223333345667778888888888888765311 00
Q ss_pred -------eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 300 -------LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDD----VVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 300 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
.-|..++..|-+.|.++.+.++-+...+....-+. ..|..+.+++...|++++|...+-.+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 01344555555556555555555544432111111 134455555555666666655554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.60 E-value=26 Score=35.09 Aligned_cols=164 Identities=8% Similarity=0.000 Sum_probs=103.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHh--CCCCc---hhHHHHHHHHHHcCCCHHHHHHHHHhcCC------CC----hhH
Q 007396 135 PALFKACAKLQALKEGMQIHGHVFKV--GFECD---LFVQNSLINMYGKCEKVEFASAIFKQMDQ------KS----VAS 199 (605)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~~----~~~ 199 (605)
..+...+-..|++.+|..++..+... |.... ...+...+..|...+++..|..++.++.. ++ ..-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667778889999999999987643 32222 35677888999999999999988887631 11 234
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHH----HHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHH
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSV----LSACTHLGALDLGKCTHGSLIRNISALNVIVETSLI 275 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l----l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 275 (605)
+..++..+...+++.+|...|.+........-|...+..+ +....-.+....-..+.....+...-++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 6677778888999999998888875431022233222221 111111222222223333333333345778889999
Q ss_pred hHHHhc--CCHHHHHHHHhccCCCC
Q 007396 276 DMYVKC--GCLEKGLCLFRMMADKC 298 (605)
Q Consensus 276 ~~y~~~--g~~~~A~~~f~~m~~~~ 298 (605)
.+|... .+++.+.+.|.....++
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHhchHhhhHHHHHHHHHHhccc
Confidence 999764 46788888888766554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.42 E-value=33 Score=32.26 Aligned_cols=170 Identities=9% Similarity=0.011 Sum_probs=104.7
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSI----FSEMLREGLEPDDVVYVGVLSA 343 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a 343 (605)
...|.++..=|.+.+++++|.+++..- ...+.++|+...|.++ .+-..+.+++++......++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345667778888999999999885433 2345677887766664 4555667889998888877777
Q ss_pred HhccCCHH-HHHHHHHHhHH---hcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 007396 344 CSHAGLVN-EGLLCFDRMKL---EYRI--VPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVH-- 415 (605)
Q Consensus 344 ~~~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~-- 415 (605)
+.....-+ .=.++.+.+.+ +.|- .-++.....+...|.+.|++.+|+.-|- .+-.-+...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence 65532111 11233333331 2221 2366778888899999999999988775 22111344555555544443
Q ss_pred -CChHHHHHHHHHHHhhCCCCCchH-HHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 416 -HNLEIGEIAAKNLFQINSHHPSDY-VLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 416 -g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
|...++ ..| ...+--|.-.|+...|..+++...+
T Consensus 181 ~~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 181 DIEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333222 222 2233456778899999999887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.25 E-value=18 Score=41.31 Aligned_cols=163 Identities=7% Similarity=0.001 Sum_probs=94.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChh
Q 007396 171 SLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALD 250 (605)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~ 250 (605)
.++..+.+.|..+.|.++..-.+. +...--.+...|...|++++|.+.|.+.-. | +..+..... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~-~~~~~~l~~----------~~- 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-V-LYSHTSQFA----------VL- 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-S-CTTCCCSCS----------SH-
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-h-hcccchhhh----------hh-
Confidence 455556667777777776655544 444444566778899999999999987532 2 222211000 00
Q ss_pred hHHHHHHHHHHhc--CCchHHHHhHHHhHHHhcCCHHHHHHHHhcc----CCCCe----eeHHHHHHHHHhcCCHHHHHH
Q 007396 251 LGKCTHGSLIRNI--SALNVIVETSLIDMYVKCGCLEKGLCLFRMM----ADKCQ----LTYSVMISGLAMHGQGKEALS 320 (605)
Q Consensus 251 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m----~~~~~----~~~~~li~~~~~~g~~~~A~~ 320 (605)
.. ...+.... ...-..-|..++..+.+.|.++.+.++-... ...+. ..|..+..++...|++++|..
T Consensus 883 --~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 883 --RE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp --HH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred --cc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00 01111110 0112234556666677777766665544322 22221 258888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 007396 321 IFSEMLREGLEPDDVVYVGVLSACSHAGLVNE 352 (605)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 352 (605)
.+-.+.....+ ...+..|+...+..|.++.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88888764433 4556667777776666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.91 E-value=48 Score=33.10 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC----hHH
Q 007396 303 SVMISGLAMHGQGKEALSIFSEMLRE--GLEPDD---VVYVGVLSACSHAGLVNEGLLCFDRMKLEY-RIVPT----VQH 372 (605)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~ 372 (605)
..|...|...|++.+|..++.++... |..+.. ..+...+..|...+++.+|..++.++.... ...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677788889999999999988653 222221 356666778888999999999988875311 12222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM 396 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m 396 (605)
|.+++..+...+++.+|...|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 778888888899999988877665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.69 E-value=11 Score=28.56 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 396 MPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 396 m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
+..-|++.+..+.+.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356788999999999999999999999999988866544444555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.84 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.81 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.31 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.16 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.94 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.89 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.74 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.66 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.52 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.89 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.72 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.59 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.39 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.81 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.3 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.97 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.55 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.1 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.6e-20 Score=187.79 Aligned_cols=369 Identities=11% Similarity=0.056 Sum_probs=292.6
Q ss_pred Ccc-CCCChHHHHHHHhhcCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHH
Q 007396 74 ALS-HWGSMDYACSIFRQIDE--P-GAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKE 149 (605)
Q Consensus 74 ~~y-~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 149 (605)
..+ +.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+.. +-+..++..+...+...|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 456 88999999999988754 4 46678888889999999999999999988763 2245578888888999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhc---CCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 007396 150 GMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQM---DQKSVASWSAIIAAHASNGLWSECLKLFGEMNNE 226 (605)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (605)
|...+..+.+.... +..........+...+....+....... .......+..........+....+...+.+....
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 99999998887654 3344444444444444444444333332 2344556666677777888888888888888775
Q ss_pred CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHH
Q 007396 227 KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYS 303 (605)
Q Consensus 227 g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~ 303 (605)
. +-+...+..+...+...|.++.|...+...++.. +.+...+..+...|...|++++|...|+... ..+...|.
T Consensus 165 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 3 4456777778888889999999999999988875 3467788889999999999999999998765 33556788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007396 304 VMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR 382 (605)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 382 (605)
.+...+.+.|++++|+..|++..+. .|+ ..++..+...+...|+.++|...++.... ..+.+...+..+...+.+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 8888999999999999999998874 444 56788888899999999999999998874 334567888889999999
Q ss_pred cCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCC
Q 007396 383 AGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQR 451 (605)
Q Consensus 383 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 451 (605)
.|++++|.+.|++. ...|+ ..+|..+..++...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999886 66675 45788888999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.3e-19 Score=176.03 Aligned_cols=355 Identities=11% Similarity=0.041 Sum_probs=292.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCH
Q 007396 103 IRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKV 182 (605)
Q Consensus 103 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (605)
...+.+.|++++|++.|+++.+.. +-+...+..+...+...|++++|...++.+++..+. +..++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 455678899999999999998863 224567888888999999999999999999998644 678899999999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 183 EFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 183 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
++|.+.+....+ .+...+..........+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHHHHHHh
Confidence 999999988763 344555566666667777777777776666554 445555555666667777788888887777
Q ss_pred HHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007396 260 IRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVV 336 (605)
Q Consensus 260 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 336 (605)
.... +.+...+..+...+...|++++|...+++.. ..+...|..+...+...|++++|+..+++....+ ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7665 4456778888999999999999999998765 3356788899999999999999999999998754 345667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHh
Q 007396 337 YVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-P-IQQNDVVWRSLLSASKV 414 (605)
Q Consensus 337 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~a~~~ 414 (605)
+..+...+...|++++|...|++..+ -.+-+...+..+...+.+.|++++|.+.++.. . .+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 77888899999999999999999874 22335678899999999999999999999887 2 33456788899999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 415 HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 415 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=7e-13 Score=128.47 Aligned_cols=241 Identities=9% Similarity=-0.054 Sum_probs=171.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 202 AIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
.....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+..+++..+ -+...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 45666788899999999999988754 33566777777888888888888888888877653 3566677777777777
Q ss_pred CCHHHHHHHHhccCCCCe---eeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007396 282 GCLEKGLCLFRMMADKCQ---LTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFD 358 (605)
Q Consensus 282 g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 358 (605)
|++++|.+.++.....+. ..+........ ..+.......+..+...+...++...|.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 777777777766532111 00000000000 0000001111222333455677777887
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 007396 359 RMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHP 436 (605)
Q Consensus 359 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 436 (605)
.......-.++...+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|++++|+..++++++.+|.++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 77644333456778888889999999999999999886 44454 56899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 437 SDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.1e-12 Score=123.79 Aligned_cols=265 Identities=11% Similarity=-0.023 Sum_probs=193.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCC
Q 007396 172 LINMYGKCEKVEFASAIFKQMDQ---KSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGA 248 (605)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~ 248 (605)
....|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccccc
Confidence 55668899999999999999763 356799999999999999999999999998753 3456778888889999999
Q ss_pred hhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007396 249 LDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLRE 328 (605)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 328 (605)
++.|.+.+..+....... ............ ..+.......+..+...+...+|.+.|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999988764321 111110000000 001111111223344556678888888887764
Q ss_pred CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHH
Q 007396 329 GL-EPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVW 405 (605)
Q Consensus 329 g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 405 (605)
.. .++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...|+ ..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 32 345667778888899999999999999998742 1234778889999999999999999999887 45564 5589
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch-----------HHHHHHHHHHcCChhHHHH
Q 007396 406 RSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD-----------YVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 406 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~a~~ 457 (605)
..+..+|...|++++|+..|++++++.|++... +..+..++...|+.+.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999998876543 3446666666777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.7e-08 Score=96.19 Aligned_cols=258 Identities=12% Similarity=0.012 Sum_probs=169.1
Q ss_pred HHHHHCCChhHHHHHHHHHHhCCCCCCC-----hhHHHHHHHHHhccCChhhHHHHHHHHHHhcC-----CchHHHHhHH
Q 007396 205 AAHASNGLWSECLKLFGEMNNEKCWRPE-----ESILVSVLSACTHLGALDLGKCTHGSLIRNIS-----ALNVIVETSL 274 (605)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 274 (605)
..+...|++++|+.++++..+.. +.+ ...+..+..++...|+++.|...+..+.+... ......+..+
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556666666666666655532 111 12344445555666666666666666554221 1113345556
Q ss_pred HhHHHhcCCHHHHHHHHhccC-------CCC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMA-------DKC----QLTYSVMISGLAMHGQGKEALSIFSEMLREGLE----PDDVVYVG 339 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~-------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ 339 (605)
...|...|++..|...+.... .+. ...+..+...+...|+++.+...+.+....... ....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 667777888887777776542 111 124455667788889999999988888764322 22345555
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-----CHHHHHHH
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPT-----VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-----NDVVWRSL 408 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l 408 (605)
....+...++..++...+........-... ...+..+...+...|++++|...+++. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 666777888888888888776542222211 234566677788899999999999887 2222 13356667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhC------CCCCchHHHHHHHHHHcCChhHHHHHHHHHHh
Q 007396 409 LSASKVHHNLEIGEIAAKNLFQIN------SHHPSDYVLLSNMYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 409 l~a~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 464 (605)
..++...|++++|...++++.... |.....+..++.+|...|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999987542 33456788899999999999999999998765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=2.7e-08 Score=94.71 Aligned_cols=185 Identities=12% Similarity=0.026 Sum_probs=133.7
Q ss_pred ChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCCC---C-eeeHHHHHHHHHhcCCHHHHHHHHH
Q 007396 248 ALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMADK---C-QLTYSVMISGLAMHGQGKEALSIFS 323 (605)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~ 323 (605)
..+.+..+++..++...+.+...+...+..+.+.|+.+.|..+|+++... + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34677778888777655666777888888888888888888888876532 2 2367788888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC----CC
Q 007396 324 EMLREGLEPDDVVYVGVLS-ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM----PI 398 (605)
Q Consensus 324 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 398 (605)
++.+.+.... ..|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~~~~-~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDARTRH-HVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTCCT-HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCCcH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8877543322 23322222 234467888888888888853 3345677888888888888888888888875 33
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 007396 399 QQN--DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHH 435 (605)
Q Consensus 399 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 435 (605)
.|+ ...|...+.--..+|+.+.+..+.+++.+.-|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 443 3478888887788888888888888888877754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.1e-07 Score=91.61 Aligned_cols=286 Identities=6% Similarity=-0.071 Sum_probs=158.5
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CC----hhHHHHHHH
Q 007396 139 KACAKLQALKEGMQIHGHVFKVGFECD----LFVQNSLINMYGKCEKVEFASAIFKQMDQ-----KS----VASWSAIIA 205 (605)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~ 205 (605)
..+...|++++|.+.+++.++.....+ ...++.+...|...|++++|...|++..+ ++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345566788888888777776543222 23455566677777777777777766532 11 123445555
Q ss_pred HHHHCCChhHHHHHHHHHHhC----CCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhc
Q 007396 206 AHASNGLWSECLKLFGEMNNE----KCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKC 281 (605)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~----g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 281 (605)
.+...|++..+...+.+.... + ..+. ......+..+...|...
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~-~~~~--------------------------------~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQH-LEQL--------------------------------PMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT-CTTS--------------------------------THHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcc-cchh--------------------------------hHHHHHHHHHHHHHHHh
Confidence 666666776666666654321 1 0110 00112333344455555
Q ss_pred CCHHHHHHHHhccCC----C----CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhcc
Q 007396 282 GCLEKGLCLFRMMAD----K----CQLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLEPD--DVVYVGVLSACSHA 347 (605)
Q Consensus 282 g~~~~A~~~f~~m~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~ 347 (605)
|+++.+...+..... . ....+..+...+...++..++...+.+.... +..+. ...+..+...+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 555555555543321 0 1123333444555666666666666554431 11111 12344445566677
Q ss_pred CCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCC
Q 007396 348 GLVNEGLLCFDRMKLEYRIVP--TVQHYGCVVDLMGRAGMLGEALELIQSM-------PIQQND-VVWRSLLSASKVHHN 417 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~a~~~~g~ 417 (605)
|+.++|...+........-.+ ....+..+...+...|++++|.+.+++. +..|+. ..+..+...+...|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 788888877776652111111 1234555677777888888887777664 333433 367777778888889
Q ss_pred hHHHHHHHHHHHhhCCC--C-------CchHHHHHHHHHHcCChhHHHH
Q 007396 418 LEIGEIAAKNLFQINSH--H-------PSDYVLLSNMYARAQRWYDVAK 457 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~~g~~~~a~~ 457 (605)
.++|...+++.+++.+. . ......++..+...++.+++.+
T Consensus 307 ~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 307 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99998888888776432 1 1123345555566677666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.5e-08 Score=93.77 Aligned_cols=199 Identities=10% Similarity=-0.071 Sum_probs=107.2
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHh
Q 007396 235 ILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAM 311 (605)
Q Consensus 235 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~ 311 (605)
++..+..++.+.|+++.|...|...++.. +.+..+++.+..+|.+.|++++|.+.|+++. ..+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344445555555555555555555544 2355666667777777777777777776654 2234566667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC----HH
Q 007396 312 HGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGM----LG 387 (605)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~ 387 (605)
.|++++|.+.|++..+... .+......+..++...+..+....+...... ..+....++ ++..+..... .+
T Consensus 118 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7778888877777776421 2333333333344444444444444444432 112222222 2222221111 12
Q ss_pred HHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 007396 388 EALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDY 439 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 439 (605)
.+...+... ...|+. .+|..+...+...|++++|...+++++..+|++...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222211111 112222 2566677778888888888888888888888765444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=3e-09 Score=102.90 Aligned_cols=230 Identities=7% Similarity=-0.105 Sum_probs=153.3
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccC--ChhhHHHHHHHHHHhcCCchHHHH-hHHHhHHHhcCCHH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLG--ALDLGKCTHGSLIRNISALNVIVE-TSLIDMYVKCGCLE 285 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~ 285 (605)
..|.+++|+..++...... +-+...+.....++...+ +++.+...+..+.+.... +...+ ......+...|..+
T Consensus 85 ~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccH
Confidence 3344566777777766543 334444554444444443 466677777777666433 33333 34456777788888
Q ss_pred HHHHHHhccCCC---CeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 007396 286 KGLCLFRMMADK---CQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKL 362 (605)
Q Consensus 286 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 362 (605)
+|+..++.+.+. +...|+.+...+.+.|++++|...+++..+. .|+.. .+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 888888877754 3456777788888888887776655544331 22221 222334445666677777777663
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 007396 363 EYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYV 440 (605)
Q Consensus 363 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 440 (605)
.-+++...+..+...+...|+.++|.+.+.+. ...|+. .+|..+..++...|+.++|...++++.+++|.+...|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 22344555666777788889999999988876 556654 48888888999999999999999999999998888888
Q ss_pred HHHHHHHH
Q 007396 441 LLSNMYAR 448 (605)
Q Consensus 441 ~l~~~~~~ 448 (605)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 77776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=8.2e-08 Score=91.44 Aligned_cols=207 Identities=11% Similarity=0.074 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMY 278 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 278 (605)
.++.+...+.+.+.+++|+.+++++.+. .|+ +...|+....++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~----------------------------------~~~a~~~r~~~l 87 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL---NAA----------------------------------NYTVWHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTT----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH---CCC----------------------------------ChHHHHHHHHHH
Confidence 4555555566666666666666666663 233 333444444444
Q ss_pred HhcC-CHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 007396 279 VKCG-CLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEG 353 (605)
Q Consensus 279 ~~~g-~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 353 (605)
.+.| ++++|+..++... ..+..+|+.+...+...|++++|++.++++.+. .| +...|..+...+.+.|++++|
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHH
Confidence 4443 2555555555443 223455555555666666666666666666653 23 345666666666666666666
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCC------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007396 354 LLCFDRMKLEYRIVP-TVQHYGCVVDLMGRAGM------LGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIA 424 (605)
Q Consensus 354 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 424 (605)
...|+.+.+ +.| +...|+.+...+.+.|. +++|.+.+.+. ...| +...|..+...+. ....+++...
T Consensus 166 l~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~ 241 (315)
T d2h6fa1 166 LQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNL 241 (315)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHH
T ss_pred HHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHH
Confidence 666666653 223 34455555444444443 56677766665 4445 4557776665544 3446778888
Q ss_pred HHHHHhhCCCCCc--hHHHHHHHHHH
Q 007396 425 AKNLFQINSHHPS--DYVLLSNMYAR 448 (605)
Q Consensus 425 ~~~~~~~~~~~~~--~~~~l~~~~~~ 448 (605)
++...++.|.... .+..++..|..
T Consensus 242 ~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 242 LNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 8888888876443 44556666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.3e-07 Score=90.06 Aligned_cols=197 Identities=7% Similarity=-0.033 Sum_probs=119.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC-CHHHHHHHHHhcC---CCChhHHHHHHHHHH
Q 007396 133 TFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCE-KVEFASAIFKQMD---QKSVASWSAIIAAHA 208 (605)
Q Consensus 133 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 208 (605)
.|+.+...+.+.+..++|.++++.+++..+. +...|+....++...| ++++|.+.++... ..+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 3445555566667778888888888777644 5667777777776665 4777777777654 245667777777777
Q ss_pred HCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHH
Q 007396 209 SNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGL 288 (605)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 288 (605)
+.|++++|++.|+++.+.. +-+...|..+...+...|+++.|.+.++.+++.. +.+...|+.+...+.+.+...
T Consensus 124 ~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~--- 197 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN--- 197 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC---
T ss_pred hhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc---
Confidence 7777777777777777643 3456666666666666677777777776666655 224445544444443333211
Q ss_pred HHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007396 289 CLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMK 361 (605)
Q Consensus 289 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 361 (605)
..+.+++|++.+.+..+. .| +...|..+...+... ..+++.+.++...
T Consensus 198 ----------------------~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 198 ----------------------DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLL 246 (315)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHH
T ss_pred ----------------------hhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 112245666666666653 33 344555444444433 3455555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=4.1e-07 Score=86.28 Aligned_cols=183 Identities=9% Similarity=0.013 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHhccC----CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007396 281 CGCLEKGLCLFRMMA----DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLC 356 (605)
Q Consensus 281 ~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 356 (605)
.+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+.+.|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 345678888888754 3355678888899999999999999999998753333345788899999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 357 FDRMKLEYRIVPTVQHYGCVVDL-MGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 357 ~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
|+.+.+ ..+.+...|...... +...|+.+.|..+|+.+ ...| +...|...+......|+.+.|+.+|+++.+..|
T Consensus 157 ~~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999984 223344555544444 34468999999999988 2233 466899999999999999999999999999877
Q ss_pred CCCc----hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 434 HHPS----DYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 434 ~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5543 5677777778889999999999998763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=3.1e-08 Score=91.47 Aligned_cols=194 Identities=10% Similarity=-0.039 Sum_probs=135.5
Q ss_pred HHHHhHHHhHHHhcCCHHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 007396 268 VIVETSLIDMYVKCGCLEKGLCLFRMMA---DKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSA 343 (605)
Q Consensus 268 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 343 (605)
..++..+...|.+.|++++|.+.|++.. ..++.+|+.+..+|.+.|++++|+..|++..+. .|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 4567778899999999999999999875 346788999999999999999999999999984 444 4578888889
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----cCCh
Q 007396 344 CSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDVVWRSLLSASKV----HHNL 418 (605)
Q Consensus 344 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~----~g~~ 418 (605)
+...|+.++|...|+...+. . +.+......+...+.+.+..+.+..+.... ...++...+.. +..+.. .+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 99999999999999998843 1 223444444444555556555554444433 11222222222 222211 1223
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 419 EIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 419 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+.+...+.......|....+|..++..|...|++++|.+.++.....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 333333444444445556678889999999999999999999998755
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=3.2e-08 Score=95.46 Aligned_cols=253 Identities=8% Similarity=-0.104 Sum_probs=173.5
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChhH-HH---HHHHHHh-------ccCChhhHHHHHHHHHHhcCCchHHHH
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEESI-LV---SVLSACT-------HLGALDLGKCTHGSLIRNISALNVIVE 271 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t-~~---~ll~a~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~ 271 (605)
++......+..++|++++++..+ ..|+..+ |+ .++.... ..|.++.+..+++.+.+.. +.+...+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 33333334445788888888876 3466543 22 2222222 2345677888888888776 4466677
Q ss_pred hHHHhHHHhcC--CHHHHHHHHhccC---CCCeeeHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 007396 272 TSLIDMYVKCG--CLEKGLCLFRMMA---DKCQLTYSV-MISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACS 345 (605)
Q Consensus 272 ~~li~~y~~~g--~~~~A~~~f~~m~---~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 345 (605)
..+..++...+ +.++|...+.++. .++...|.. ....+...+.+++|+..++++.+... -+...|..+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 77777776665 4889999888875 334555544 34667778999999999998887432 24567777888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHH
Q 007396 346 HAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQ-QNDVVWRSLLSASKVHHNLEIGEI 423 (605)
Q Consensus 346 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~ 423 (605)
..|++++|...+...... .|+ ...+...+...+..+++...+.+. ... ++...+..+...+...++.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 888887776555444321 111 112333445566666777766655 222 334466667777888899999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 424 AAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+.+..+.+|.+..++..++.+|...|++++|.+.++...+.+
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999998744
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=2e-06 Score=80.47 Aligned_cols=189 Identities=11% Similarity=0.002 Sum_probs=116.6
Q ss_pred HHhHHHhcCCHHHHHHHHhccCC-----CC----eeeHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHH
Q 007396 274 LIDMYVKCGCLEKGLCLFRMMAD-----KC----QLTYSVMISGLAMHGQGKEALSIFSEMLRE----GLE-PDDVVYVG 339 (605)
Q Consensus 274 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ 339 (605)
..+.|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|.+.+++..+. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34556666677776666665431 11 246677777777788888888777765442 111 11234555
Q ss_pred HHHHHh-ccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-------H-HHH
Q 007396 340 VLSACS-HAGLVNEGLLCFDRMKLEY---RIVP-TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-------D-VVW 405 (605)
Q Consensus 340 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~ 405 (605)
+...|. ..|++++|...|++...-. +..+ ...++..+...|.+.|++++|.+.|++. ...|+ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 565664 4689999999888775311 1111 1345777888999999999999999886 11111 1 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-----hHHHHHHHHHH--cCChhHHHHHHHHH
Q 007396 406 RSLLSASKVHHNLEIGEIAAKNLFQINSHHPS-----DYVLLSNMYAR--AQRWYDVAKIRTEM 462 (605)
Q Consensus 406 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 462 (605)
...+..+...|+.+.|...+++..+.+|..+. ....|+.+|.. .+++++|.+.++.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44455667889999999999999998875332 23455566554 34578887777543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=6.5e-07 Score=78.74 Aligned_cols=95 Identities=6% Similarity=-0.048 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 369 TVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
+...+.-....|.+.|++++|...|++. ...| +...|..+..+|...|+++.|+..++++++++|.++.+|..++.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333333444444555555555555443 2222 2334555555555555555555555555555555555555555555
Q ss_pred HHcCChhHHHHHHHHHH
Q 007396 447 ARAQRWYDVAKIRTEMA 463 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~ 463 (605)
...|++++|...+++..
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.1e-06 Score=69.54 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhH
Q 007396 377 VDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYD 454 (605)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (605)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44567778888888888776 3444 455788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCC
Q 007396 455 VAKIRTEMASKG 466 (605)
Q Consensus 455 a~~~~~~m~~~~ 466 (605)
|...+++..+..
T Consensus 90 A~~~~~~a~~~~ 101 (117)
T d1elwa_ 90 AKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 888888887644
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=8.5e-06 Score=70.75 Aligned_cols=141 Identities=9% Similarity=-0.067 Sum_probs=95.6
Q ss_pred HhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007396 275 IDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGL 354 (605)
Q Consensus 275 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 354 (605)
...+...|+++.|++.|+++..++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4556778888889888888888887788888888888888888888888888742 224467777888888888888888
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 007396 355 LCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINS 433 (605)
Q Consensus 355 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 433 (605)
..|++.... ...+... .+...| +..+++ ..++..+..++...|++++|.+.++++.++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888877631 1111100 000000 001111 12455566677888888888888888888777
Q ss_pred CC
Q 007396 434 HH 435 (605)
Q Consensus 434 ~~ 435 (605)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 63
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=9.2e-07 Score=69.47 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCCh
Q 007396 375 CVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRW 452 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 452 (605)
.+...+.+.|++++|...|++. ...|+ ...|..+..++...|++++|+..++++++++|.++.++..|+..|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3456678899999999999887 44564 669999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 007396 453 YDVAKIRTEMA 463 (605)
Q Consensus 453 ~~a~~~~~~m~ 463 (605)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=6.5e-06 Score=71.54 Aligned_cols=120 Identities=10% Similarity=0.004 Sum_probs=87.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 007396 343 ACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEI 420 (605)
Q Consensus 343 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 420 (605)
.+...|++++|.+.|..+. +|+...|..+...|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3456677777777776543 356666777777777777777777777776 44453 4577788888888888888
Q ss_pred HHHHHHHHHhhCCCCC----------------chHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 007396 421 GEIAAKNLFQINSHHP----------------SDYVLLSNMYARAQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 421 a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 467 (605)
|...|++++...+.+. .++..++.+|.+.|++++|.+.++...+...
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888888877654432 3456789999999999999999998877543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=2.4e-06 Score=74.86 Aligned_cols=116 Identities=8% Similarity=-0.081 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 007396 332 PDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLL 409 (605)
Q Consensus 332 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 409 (605)
|+...+......+...|++++|...|...... -+.+...|..+..+|.+.|++++|...|++. .+.|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66666777778888888888888888887742 2345677888888888889999998888886 66675 45888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 410 SASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 410 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
.++...|++++|+..++++++++|.+...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8999999999999999999888876555544444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.5e-06 Score=65.40 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=82.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007396 341 LSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNL 418 (605)
Q Consensus 341 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 418 (605)
...+...|++++|..+|+...+. -+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45567788888888888888742 2335677888888888889999988888877 3344 556888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 419 EIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 419 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
++|+..++++++.+|+++..+..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999887777666553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=3e-05 Score=72.20 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=63.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC----CCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHhCCC-----CchhHHHH
Q 007396 102 LIRGFVKEVEFEEALFLYNEMFER----GVEPD-NFTFPALFKACAKLQALKEGMQIHGHVFKVGFE-----CDLFVQNS 171 (605)
Q Consensus 102 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~ 171 (605)
....|...|++++|++.|.+..+. +-.++ ..+|..+..++.+.|++++|...++..++.-.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355666677777777777666542 11111 235566666666666777666666655543111 11233444
Q ss_pred HHHHHH-cCCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHCCChhHHHHHHHHHHh
Q 007396 172 LINMYG-KCEKVEFASAIFKQMDQ-----KS----VASWSAIIAAHASNGLWSECLKLFGEMNN 225 (605)
Q Consensus 172 li~~y~-~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (605)
+...|- ..|++++|.+.+++..+ .+ ..+|..+...|...|++++|+..|++...
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444442 34666666655554321 11 12344555555556666666666555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.1e-05 Score=67.74 Aligned_cols=117 Identities=7% Similarity=-0.011 Sum_probs=91.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCC
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHN 417 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~ 417 (605)
....|.+.|++++|...|++..+- . +-+...|..+...|.+.|++++|.+.|++. .+.|+. ..|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~-~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL-N-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc-c-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677888899999888888742 1 335678888888899999999999999887 455654 589999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHH--HHcCChhHHHHH
Q 007396 418 LEIGEIAAKNLFQINSHHPSDYVLLSNMY--ARAQRWYDVAKI 458 (605)
Q Consensus 418 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 458 (605)
+++|...++++.+++|.++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777665553 334456666544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=6e-06 Score=69.32 Aligned_cols=91 Identities=7% Similarity=-0.023 Sum_probs=81.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChh
Q 007396 376 VVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWY 453 (605)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 453 (605)
....|.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345688999999999999987 4455 45689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007396 454 DVAKIRTEMASKG 466 (605)
Q Consensus 454 ~a~~~~~~m~~~~ 466 (605)
+|.+.+++..+.+
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4e-05 Score=64.82 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 371 QHYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
..|+.+...|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.....+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666788899999999999999887 5556 566888999999999999999999999999999999998888888776
Q ss_pred cCChhHH
Q 007396 449 AQRWYDV 455 (605)
Q Consensus 449 ~g~~~~a 455 (605)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.7e-05 Score=62.87 Aligned_cols=105 Identities=11% Similarity=-0.058 Sum_probs=76.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH---HHHHHHHHHC-CCCCCH---HHHHHHHH
Q 007396 338 VGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGML---GEALELIQSM-PIQQND---VVWRSLLS 410 (605)
Q Consensus 338 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 410 (605)
..+++.+...+++++|.+.|+..... -+.++.++..+..++.+.++. ++|.++++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34667777778888888888887732 234567777777777765544 4688888876 444433 26778888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 007396 411 ASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSN 444 (605)
Q Consensus 411 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 444 (605)
+|...|++++|+..++++++++|++..+...+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 9999999999999999999999988766554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=0.00012 Score=61.73 Aligned_cols=64 Identities=3% Similarity=-0.092 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...++...+.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3567788889999999999999999999999999999999999999999999999999998754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=1.3e-05 Score=63.51 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhCCCC--CchHHHHHHHH
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVH---HNLEIGEIAAKNLFQINSHH--PSDYVLLSNMY 446 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~ 446 (605)
..++..+...+++++|.+.|++. ...| +..++..+..++.+. ++.++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999987 4445 456888888888654 45567999999999988754 34788999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 007396 447 ARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+.|++++|.+.++++.+.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998743
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=0.0012 Score=59.72 Aligned_cols=229 Identities=9% Similarity=-0.053 Sum_probs=128.8
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCchHHHH
Q 007396 196 SVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTH----LGALDLGKCTHGSLIRNISALNVIVE 271 (605)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 271 (605)
|+..+..+...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+. ....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchh
Confidence 45566677777777888888888888887766 33333333333332 3344555555555444441 1122
Q ss_pred hHHHhHHHhcCCHHHHHHHHhccCCCCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcc
Q 007396 272 TSLIDMYVKCGCLEKGLCLFRMMADKCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSAC----SHA 347 (605)
Q Consensus 272 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~ 347 (605)
..+...+... ....++.+.|...+++....|.... ...+...+ ...
T Consensus 74 ~~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 74 HLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVT 123 (265)
T ss_dssp HHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSC
T ss_pred hccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCccc
Confidence 2222222110 0113445566666666655443211 11111111 123
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChH
Q 007396 348 GLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGR----AGMLGEALELIQSMPIQQNDVVWRSLLSASKV----HHNLE 419 (605)
Q Consensus 348 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~ 419 (605)
.....+...+..... ..+...+..|...|.. ..+...+...++...-..+......|...+.. ..+.+
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 445556665555442 2344555556666654 34555666666655222345555555555544 56899
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYAR----AQRWYDVAKIRTEMASKGL 467 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 467 (605)
.|+..|++..+.+ ++..+..|+.+|.. ..+.++|.+.|++..+.|-
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999998876 46778888888876 3478899999999888774
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.86 E-value=0.00023 Score=58.71 Aligned_cols=64 Identities=9% Similarity=-0.046 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 403 VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 403 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|+...+.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3667788888999999999999999999999999999999999999999999999999888643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.00025 Score=59.54 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHc
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARA 449 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (605)
.|.-+...|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4556777888999999999999887 4444 4568888999999999999999999999999999998888888777666
Q ss_pred CChh-HHHHHHHHHH
Q 007396 450 QRWY-DVAKIRTEMA 463 (605)
Q Consensus 450 g~~~-~a~~~~~~m~ 463 (605)
+... ...+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 6544 3445555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.00041 Score=58.27 Aligned_cols=85 Identities=7% Similarity=-0.088 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 370 VQHYGCVVDLMGRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
...|..+...|.+.|++++|+..+++. .+.|+ ...|..+..++...|+++.|+..|+++++++|+++..+..+..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456677788899999999999999887 66665 4589999999999999999999999999999999888888777765
Q ss_pred HcCChhH
Q 007396 448 RAQRWYD 454 (605)
Q Consensus 448 ~~g~~~~ 454 (605)
+.....+
T Consensus 157 ~l~~~~~ 163 (169)
T d1ihga1 157 KIKAQKD 163 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.017 Score=53.50 Aligned_cols=135 Identities=10% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007396 94 PGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLI 173 (605)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (605)
||..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.++.... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4444444556666677777777777765432 566666667777777766655433 1455666666
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhcc
Q 007396 174 NMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHL 246 (605)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~ 246 (605)
..+.+......|.-+ ......+......++..|-..|.+++.+.+++...... .++...++-++..+++.
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHh
Confidence 666666655544222 11112233344556667777777777777777654322 44555555565555553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.71 E-value=0.0081 Score=53.99 Aligned_cols=90 Identities=14% Similarity=0.049 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 007396 97 FDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFKACAK----LQALKEGMQIHGHVFKVGFECDLFVQNSL 172 (605)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (605)
..+..|...+-+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+ +......|
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 345555556666777777777777776655 33444444444443 346666666666665554 22333333
Q ss_pred HHHHHc----CCCHHHHHHHHHhc
Q 007396 173 INMYGK----CEKVEFASAIFKQM 192 (605)
Q Consensus 173 i~~y~~----~g~~~~A~~~~~~m 192 (605)
...+.. ..+.+.|...++..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a 100 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKA 100 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhh
Confidence 333332 23455555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=6e-05 Score=60.23 Aligned_cols=91 Identities=8% Similarity=0.071 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hHHHHHH
Q 007396 374 GCVVDLMGRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPS-------DYVLLSN 444 (605)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~ 444 (605)
.-+...|.+.|++++|.+.|++. .+.| +...|..+..+|...|+++.|+..++++++++|.++. +|..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34566778888888888888776 4444 4668888999999999999999999999999887664 4556777
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 007396 445 MYARAQRWYDVAKIRTEMAS 464 (605)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~ 464 (605)
.+...+++++|.+.++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 78888999999999987764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.00022 Score=59.96 Aligned_cols=65 Identities=2% Similarity=-0.100 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 402 DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 402 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|.+.+++..+.+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34777888889999999999999999999999999999999999999999999999999998743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00018 Score=61.00 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=82.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 007396 340 VLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSMPIQQNDVVWRSLLSASKVHHNLE 419 (605)
Q Consensus 340 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~ 419 (605)
........|++++|.+.|.....- .++... ..+....-......-++.. ....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l-----~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE---WRGPVL-----DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCSSTT-----GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---Cccccc-----ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 334667888999999888888732 222100 0000000011111111111 2347788889999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCCC
Q 007396 420 IGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMA-----SKGLNQ 469 (605)
Q Consensus 420 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~ 469 (605)
+|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++. +.|+.|
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999874 357766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=0.00036 Score=57.50 Aligned_cols=125 Identities=10% Similarity=-0.116 Sum_probs=87.1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007396 301 TYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLM 380 (605)
Q Consensus 301 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 380 (605)
.+......+.+.|++++|+..|.+....- |... ...-......... ....+|.-+...|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 45556667778888888888888877521 1100 0000000000000 1124667788889
Q ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQ-NDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMY 446 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (605)
.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999887 5556 5569999999999999999999999999999999887766665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.62 E-value=0.00093 Score=55.88 Aligned_cols=63 Identities=3% Similarity=-0.076 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
+|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|.+.++++.+.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 566677788999999999999999999999999999999999999999999999999998754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.61 E-value=0.00019 Score=55.56 Aligned_cols=88 Identities=10% Similarity=-0.082 Sum_probs=52.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcC
Q 007396 203 IIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCG 282 (605)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 282 (605)
+...+.+.|++++|+..|++..... +-+...|..+..++.+.|+++.|...++.+++.. +.+..++..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 4445666666666666666666533 2245555555566666666666666666666554 334556666666666666
Q ss_pred CHHHHHHHHhc
Q 007396 283 CLEKGLCLFRM 293 (605)
Q Consensus 283 ~~~~A~~~f~~ 293 (605)
++++|.+.|++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=1.4e-05 Score=80.67 Aligned_cols=75 Identities=7% Similarity=-0.013 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 007396 373 YGCVVDLMGRAGMLGEALELIQSM-PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYA 447 (605)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (605)
+..+.+.+...|++++|...|++. .+.|+. ..|+.|...+...|+..+|...|.+.+...|+.+.++..|...|.
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 334444444445555555444444 333332 244444444444455555555555554444444444444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.25 E-value=0.074 Score=49.03 Aligned_cols=243 Identities=12% Similarity=0.038 Sum_probs=146.8
Q ss_pred CchhhccccccccCcc-CCCChHHHHHHHhhcCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007396 61 WNPFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAFDFNTLIRGFVKEVEFEEALFLYNEMFERGVEPDNFTFPALFK 139 (605)
Q Consensus 61 ~~~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 139 (605)
+|..--..+. ..+ +.|.++.|..++..+. .|..++..+.+.+++..|.+++... -+..+|..+..
T Consensus 12 ~n~~d~~~i~---~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVG---DRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C-------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHH---HHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 3333334455 778 9999999999998765 4888999999999999999988754 25568888999
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHCCChhHH
Q 007396 140 ACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMD---QKSVASWSAIIAAHASNGLWSEC 216 (605)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 216 (605)
+|........+ .+...+...+......++..|-..|.+++...+++... ..+...++.++..|++.+ .++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHH
Confidence 98877666543 22333344566666789999999999999999999753 456678899999998864 3343
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhHHHhcCCHHHHHHHHhccCC
Q 007396 217 LKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDMYVKCGCLEKGLCLFRMMAD 296 (605)
Q Consensus 217 ~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 296 (605)
++.+... . -.-| ..-++..|.+.+- |.-++-.|.+.|++++|..+.-.-.
T Consensus 152 ~e~l~~~---s-~~y~---~~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~~~- 201 (336)
T d1b89a_ 152 REHLELF---W-SRVN---IPKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMNHP- 201 (336)
T ss_dssp HHHHHHH---S-TTSC---HHHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHHST-
T ss_pred HHHHHhc---c-ccCC---HHHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHHcc-
Confidence 3333332 1 1222 2334455544433 3346677788888888776653321
Q ss_pred CCeeeHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007396 297 KCQLTYSVMISGLAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCF 357 (605)
Q Consensus 297 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 357 (605)
+++......+..+.+.++.+...++.....+. .| ...+.+|......-+..+..+.+
T Consensus 202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHH
Confidence 12233444566677777776666655555442 34 23344555555545554444444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.22 E-value=0.00097 Score=54.95 Aligned_cols=87 Identities=10% Similarity=-0.086 Sum_probs=63.0
Q ss_pred HHHhcCCHHHHHHHHHHC----CCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----------
Q 007396 379 LMGRAGMLGEALELIQSM----PIQQN----------DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH---------- 434 (605)
Q Consensus 379 ~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---------- 434 (605)
.+.+.|++++|.+.|++. +..|+ ...|+.+..++...|++++|...+++.+++.|.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 444556666666666554 21222 346778888889999999999998888876432
Q ss_pred -CCchHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 435 -HPSDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 435 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
....+..++.+|...|++++|.+.|++..+.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1225678899999999999999999998763
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0014 Score=51.86 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHh
Q 007396 200 WSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRN 262 (605)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 262 (605)
+..+...|.+.|++++|+..|.+..+.+ +.+...+..+..++.+.|+++.|.+.+..+++.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 3445666777777777777777777644 334555556666666666666666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.02 E-value=0.00025 Score=57.80 Aligned_cols=86 Identities=5% Similarity=-0.053 Sum_probs=60.6
Q ss_pred HhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh----------cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHH
Q 007396 381 GRAGMLGEALELIQSM-PIQQN-DVVWRSLLSASKV----------HHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYAR 448 (605)
Q Consensus 381 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (605)
-+.+.+++|.+.|++. .+.|+ ...|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666665 33443 3345444444432 3446889999999999999999999999999987
Q ss_pred cCC-----------hhHHHHHHHHHHhCC
Q 007396 449 AQR-----------WYDVAKIRTEMASKG 466 (605)
Q Consensus 449 ~g~-----------~~~a~~~~~~m~~~~ 466 (605)
.|+ +++|.+.|++..+..
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 764 678888888887643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0029 Score=46.80 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHC----C----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 007396 375 CVVDLMGRAGMLGEALELIQSM----P----IQQN-DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLS 443 (605)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 443 (605)
-+...+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4455556666666666666554 1 1233 347888999999999999999999999999999887776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.90 E-value=0.00052 Score=55.86 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=67.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEPD-DVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLG 387 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 387 (605)
|-+.+.+++|...|++..+. .|+ ...+..+..++...++...+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 44555677777777777663 343 3445555545443222211100 112234
Q ss_pred HHHHHHHHC-CCCCC-HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhH
Q 007396 388 EALELIQSM-PIQQN-DVVWRSLLSASKVHH-----------NLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYD 454 (605)
Q Consensus 388 ~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 454 (605)
+|.+.|++. .+.|+ ..+|..+..+|...| +++.|...|+++++++|++...+..|... ..
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 444444443 33332 335555555544332 36889999999999999887665555444 45
Q ss_pred HHHHHHHHHhCCC
Q 007396 455 VAKIRTEMASKGL 467 (605)
Q Consensus 455 a~~~~~~m~~~~~ 467 (605)
|.+++.+..+.|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.00061 Score=68.30 Aligned_cols=223 Identities=7% Similarity=-0.123 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhCCCCc-hhhccccccccCcc-CCCChHHHHHHHhhcCCCCcc---cHHHHHHHHHhCCCchHHHHHHH
Q 007396 46 EFKKVHAHVLKWGFFWN-PFCASNLVATCALS-HWGSMDYACSIFRQIDEPGAF---DFNTLIRGFVKEVEFEEALFLYN 120 (605)
Q Consensus 46 ~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~y-~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~ 120 (605)
+|.+.+.++++. .|+ +..+..+- .+| ..|++++| ++++..-|.. .++. ....-...+..+++.++
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la---~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~--e~~Lw~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPA---EVWTSRQALQDL---YQKMLVTDLEYALDKKV--EQDLWNHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSS---SSHHHHHHHHHH---HHHHHHHCHHHHHHHTH--HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHH---HHHHHHchHHHH---HHHHHHcChhhHHHHhH--HHHHHHHHHHHHHHHHH
Confidence 345666666653 333 23344455 888 88888876 4444322211 1111 11111122556777787
Q ss_pred HHHHCCCCCCcchHHHHHHHHH--ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh-
Q 007396 121 EMFERGVEPDNFTFPALFKACA--KLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGKCEKVEFASAIFKQMDQKSV- 197 (605)
Q Consensus 121 ~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~- 197 (605)
...+....++..-....+..+. ..+.++.+.+.+....+.. .++...+..+...+.+.|+.++|...+.....++.
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 152 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ 152 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHH
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH
Confidence 7776544455443333332221 1233344444333333222 23456677777888888888888877665443332
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHHHHhcCCchHHHHhHHHhH
Q 007396 198 ASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSLIRNISALNVIVETSLIDM 277 (605)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 277 (605)
.++..+...+...|++++|...|.+..+.. +-+...|+.+...+...|+..+|...|.+.+... +|....+..|...
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 367777888889999999999999988843 3455788888888889999999999998888776 4567777778777
Q ss_pred HHhcC
Q 007396 278 YVKCG 282 (605)
Q Consensus 278 y~~~g 282 (605)
|.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 76543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.78 E-value=0.0037 Score=52.54 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHHHH
Q 007396 199 SWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHGSL 259 (605)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 259 (605)
.+..+...+...|++++|+..++++.... +-+...|..++.++.+.|+..+|.+.|+.+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444555555555555555555554432 334444555555555555555555555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.72 E-value=0.0029 Score=56.98 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=74.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 007396 310 AMHGQGKEALSIFSEMLREGLEP-DDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPT-VQHYGCVVDLMGRAGMLG 387 (605)
Q Consensus 310 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 387 (605)
.+.|++++|+..+++.++. .| |...+..+...++..|++++|.+.|+...+ +.|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 4567888888888888774 34 446777777788888888888888887763 2344 334444444444334333
Q ss_pred HHHHHHHHC--CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 388 EALELIQSM--PIQQND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 388 ~A~~~~~~m--~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
++..-.... ...|+. ..+......+...|+.++|...++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 332222211 112322 233344455677788888888888888877765543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.59 E-value=0.011 Score=48.15 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHC--------CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 007396 372 HYGCVVDLMGRAGMLGEALELIQSM--------PIQQN-----DVVWRSLLSASKVHHNLEIGEIAAKNLFQINSH 434 (605)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 434 (605)
.|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..++...|++++|+..|++++++.|.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4455555566666666655555443 12222 125667788899999999999999999888654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.39 E-value=0.0011 Score=59.80 Aligned_cols=120 Identities=10% Similarity=0.017 Sum_probs=82.6
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCChHHHH
Q 007396 345 SHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGEALELIQSM-PIQQNDV-VWRSLLSASKVHHNLEIGE 422 (605)
Q Consensus 345 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~ 422 (605)
...|++++|...+++..+ .-+.+...+..+...|+..|++++|.+.++.. ...|+.. .+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 467999999999999984 33456899999999999999999999999988 5566544 5544444443333332222
Q ss_pred HHHHHHHhh-CCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 423 IAAKNLFQI-NSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 423 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
......... +|++...+...+..+...|+.++|.+.+++..+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 111111111 23233445566778889999999999999988744
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.02 Score=41.94 Aligned_cols=63 Identities=8% Similarity=-0.107 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 007396 404 VWRSLLSASKVHHNLEIGEIAAKNLFQINSHH-------PSDYVLLSNMYARAQRWYDVAKIRTEMASKG 466 (605)
Q Consensus 404 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 466 (605)
.+-.+...+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+.+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34466778899999999999999999876543 3468889999999999999999999998754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.88 Score=43.63 Aligned_cols=57 Identities=12% Similarity=-0.027 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 007396 170 NSLINMYGKCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 170 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (605)
...+..+.+.++++...+.+..-+ .+...--....+....|+..+|...+...-..|
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 344566677788877666554322 234444456677778888888888888777766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.30 E-value=0.38 Score=36.11 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=95.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007396 309 LAMHGQGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVDLMGRAGMLGE 388 (605)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 388 (605)
+...|..++..++..+.... .+..-|+-++--....-+-+...+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34456677777777776652 233445555544444455555555555554333322 3455555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 007396 389 ALELIQSMPIQQNDVVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSDYVLLSNMYARAQRWYDVAKIRTEMASKGLN 468 (605)
Q Consensus 389 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (605)
....+-.++ .+..-....+......|+-+.-.++.+.+++.+..+|.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555555553 244556667788889999999999999988877777888999999999999999999999999999974
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.97 E-value=0.86 Score=34.17 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=61.8
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCChhHHHHHHHHHhccCChhhHHHHHH
Q 007396 178 KCEKVEFASAIFKQMDQKSVASWSAIIAAHASNGLWSECLKLFGEMNNEKCWRPEESILVSVLSACTHLGALDLGKCTHG 257 (605)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 257 (605)
+|+++......+-.+.. +..-.+.-++...++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++.+++.
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44455554444444332 23345566778888999999999999877765 7888888889999999999999999998
Q ss_pred HHHHhcCC
Q 007396 258 SLIRNISA 265 (605)
Q Consensus 258 ~~~~~~~~ 265 (605)
++.+.|..
T Consensus 145 ~ACe~G~K 152 (161)
T d1wy6a1 145 EACKKGEK 152 (161)
T ss_dssp HHHHTTCH
T ss_pred HHHHHhHH
Confidence 88888854
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.50 E-value=1.3 Score=33.98 Aligned_cols=109 Identities=10% Similarity=0.032 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----CCCHHHHH
Q 007396 111 EFEEALFLYNEMFERGVEPDNFTFPALFKACAKLQALKEGMQIHGHVFKVGFECDLFVQNSLINMYGK----CEKVEFAS 186 (605)
Q Consensus 111 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 186 (605)
++++|+..|++..+.| +......+. .....+.++|...+....+.| ++.....|-.+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4566777777766655 222222222 123345666666666666555 33444444444433 23445555
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHhCC
Q 007396 187 AIFKQMDQ-KSVASWSAIIAAHAS----NGLWSECLKLFGEMNNEK 227 (605)
Q Consensus 187 ~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 227 (605)
+.|++..+ .++.+...|...|.. ..+.++|+++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 55544432 233333333333333 233444444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.19 E-value=0.95 Score=34.73 Aligned_cols=45 Identities=7% Similarity=-0.096 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSH----AGLVNEGLLCFDRMK 361 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~ 361 (605)
+.++|+++|++..+.|. ......|...|.+ ..+.++|..+|+...
T Consensus 74 d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 45556666666555442 2222233333332 345666666666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.21 Score=37.93 Aligned_cols=50 Identities=4% Similarity=0.044 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHhhCCCCC-chHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 007396 416 HNLEIGEIAAKNLFQINSHHP-SDYVLLSNMYARAQRWYDVAKIRTEMASK 465 (605)
Q Consensus 416 g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 465 (605)
.+.++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+.
T Consensus 52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 345667777777776666543 45566777777777777777777777663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.55 E-value=5.1 Score=29.90 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 007396 385 MLGEALELIQSM-PIQQ-ND-VVWRSLLSASKVHHNLEIGEIAAKNLFQINSHHPSD 438 (605)
Q Consensus 385 ~~~~A~~~~~~m-~~~p-~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 438 (605)
+++++..++++. ...| +. ..|-.|.-+|.+.|+++.|.+.++++++.+|.+..+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 345666666665 2223 22 356667778888999999999999999999987543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.10 E-value=3.5 Score=29.10 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007396 314 QGKEALSIFSEMLREGLEPDDVVYVGVLSACSHAGLVNEGLLCFDRMKLEYRIVPTVQHYGCVVD 378 (605)
Q Consensus 314 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 378 (605)
+.-++.+-+..+....+.|+.....+.|.||-+.+++..|.++|+..+.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556677777777778899999999999999999999999999998885444 34556766654
|