Citrus Sinensis ID: 007401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-----
Protein Sequence
MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccEEEEEEcccccccccccccHHHccccccccccHHHHHHHHHcccEEccHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHcHHHcEEEEccHHHHHHHHHHccHcccccccccccccEEEEEccccccccccccccHHHHHccccccccHHHHHHHHHcccEEEEcccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHccEEEEccccccccccEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHHHHHcccHHHHHHEHEccHHHHHHHHHccccEEcEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHEEEEEEHccccccEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msksfniiktntsnpkVWVVIGVSVVGFVVLAETLrrrrnpklngrvdfgaflerfelipfpqppppaarqplaGLKFAIKDVfdvkgyvtgfgspdwkrdhheAERTAVVVTLLLKNgatcigktvldefafgitgenkhygtpvnpqmpshipggsssgSAVAVAAQLVDFAlgtdtigcvrvpasfcgilgyrpshgtvsmigvlpnsqsldtVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAddifqlskvpklktIHVISKAIESlsgyqnpehmnvgqyiasnvpslkglraqstspengTATLKALSSVMLSLQRYEFKTIYEEWVksakprlgyNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKddkilviptvsdpplklntkktysaefhdrtLVLSSIgsmsgccqvaipigkynehpiSISFITyhggdkflLDTVLDLYDSLQEQVNIAsnlvplpdtngsidASELLKEKgnaafkgkQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG
Flexible Loop (DISEMBL)
MSKSFNIIktntsnpkvwvVIGVSVVGFVVLaetlrrrrnpklngRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGfgspdwkrdhhEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFaddifqlskvpklktIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWvksakprlgYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRllkddkilviptvsdpplklntkktysaefHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIAsnlvplpdtNGSIDASELLKEKGnaafkgkqwNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCsktisldkkNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG
Low Complexity Region (SEG)
MSKSFNIIKTNTSNPKvwvvigvsvvgfvvLAETLRRRRNPKLNGRVDFGAFLERFELIpfpqppppaarqpLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPggsssgsavavaaQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG
Disordered region (IsUnstruct)
******IIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPF**********PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHY********************AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA**********************LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPD*********LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL*******************
Disordered Region (DISOPRED)
**************PKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFE***************LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQE******************************AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ*K******KRLRKLI*
Disordered Region (DISEMBL)
MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHI********AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLK***********GTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG
Disordered Region (DISPRO)
****FN*IKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSS**A****AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNL***********ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	605	2.2.26 [Sep-21-2011]
F4KCL7	603	Outer envelope protein 64	yes	no	0.995	0.998	0.654	0.0
Q9MUK5	593	Translocon at the outer m	N/A	no	0.963	0.983	0.516	1e-156
Q9LVH5	589	Outer envelope protein 64	no	no	0.922	0.947	0.523	1e-152
Q9FR37	425	Amidase 1 OS=Arabidopsis	no	no	0.680	0.969	0.477	1e-101
Q8PXJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.608	0.773	0.305	1e-30
Q8THJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.608	0.773	0.298	5e-30
Q2FQM9	431	Glutamyl-tRNA(Gln) amidot	yes	no	0.618	0.867	0.291	3e-29
Q9JTZ5	481	Glutamyl-tRNA(Gln) amidot	yes	no	0.305	0.384	0.401	5e-29
A9M003	481	Glutamyl-tRNA(Gln) amidot	yes	no	0.305	0.384	0.401	6e-29
A1KUH8	481	Glutamyl-tRNA(Gln) amidot	yes	no	0.305	0.384	0.401	1e-28

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/605 (65%), Positives = 490/605 (80%), Gaps = 3/605 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS + ++I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MP ++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct: 239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
            ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct: 359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
           QQAE+DC+K + +DKKNVKAYLRRGTARE+L  Y EA  DF+HA+VLEPQNK A +AEKR
Sbjct: 539 QQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKR 598

Query: 600 LRKLI 604
           LRK I
Sbjct: 599 LRKHI 603

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score =  553 bits (1424), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 304/589 (51%), Positives = 404/589 (68%), Gaps = 6/589 (1%)

Query: 16  KVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAG 75
           ++WV++G+ + G  VL   L +        + DFGAFL + +L+P P P PP A  PL+ 
Sbjct: 10  QIWVILGLGLAGIYVLTRKLTQAV------KEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 76  LKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGI 135
           L FAI D+FD++G+V+ FG P+W R H  A  TA  V+ L+++GATCIG TV+DE A+GI
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 136 TGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGY 195
           +GENKH+GTP NP +P+ +PGGSSSG+AVAVAA  VDF+LG DT G VRVPA FCGILG+
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 196 RPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIF 255
           RPSHG VS +G++P S SLDTVG  A++  +L RVGH+LLQ   V  R  R++I ADD F
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL 315
           Q   VP  +T  V+ KA E L G Q  +H+N   YI+S V SLK    Q ++    +++L
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 316 KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMR 375
           K L++VM SLQR+EF+  + EW+   KP L   V  ++ E    ++  I+    VR+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 376 AALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK 435
            A+  LLKD+ +LVIPTV+DPP KL  K+  S ++  R L L SI S+SGCCQV +P+G 
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 436 YNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEK 495
           ++++P+S+S I  HGGD+FLLDT+  +Y  LQEQ +IA+             ++E+ KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           GN A+K KQW KA+ +Y+EAIKL G +ATYYSNRA AYLELG + QAEEDC+  IS DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
           NVKAY RRGTARE L  Y EA+ DFK+A+VLEP NK A  + +RLRKL 
Sbjct: 544 NVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLF 592

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.

Pisum sativum (taxid: 3888)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  540 bits (1392), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/558 (52%), Positives = 381/558 (68%)

Query: 46  RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA 105
           R DFGAF+++  L+P PQP PP A  PL GL FA+ DVFD+ GYVTGFG PDW R H  A
Sbjct: 31  REDFGAFIDKLMLLPPPQPAPPKAPHPLTGLTFAVSDVFDITGYVTGFGHPDWVRTHEAA 90

Query: 106 ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVA 165
             T+ VV+ L++ GATC+GKTV+DEFAF I+GENKHY +P NP  P+ IPGG+ SG+AVA
Sbjct: 91  SSTSPVVSTLVEGGATCVGKTVVDEFAFSISGENKHYDSPTNPAAPTRIPGGACSGAAVA 150

Query: 166 VAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 225
           VA   VDFALG DT+G VRVPA +CG+LG++ S+G +S  G++P S SLD+VG  AR+ +
Sbjct: 151 VATNAVDFALGIDTVGGVRVPAGYCGVLGFKSSYGAISNTGIIPVSSSLDSVGWFARDPN 210

Query: 226 ILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHM 285
            L RVGHVLLQL     R  R++I ADD FQL K+P  +   V++K+ E L G Q  +H 
Sbjct: 211 TLRRVGHVLLQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVTKSAEKLFGRQLLKHQ 270

Query: 286 NVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRL 345
           N+  Y  + VPSLK             +T + L++VM  LQR+EF   + +W+ + KP +
Sbjct: 271 NLETYFETKVPSLKEFARTKAIANTKVSTSRLLANVMQLLQRHEFLQNHGDWINTVKPAI 330

Query: 346 GYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKT 405
              +  +V E    T +  + L  +RNE R A+  LLKDD ILVIPT+   P KL +K+ 
Sbjct: 331 DPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVIPTLPAVPPKLGSKEI 390

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465
            S ++ +R   L SI S+SGCCQV +P+G + + PIS+SFI  HGGD+FLLDTV  +Y S
Sbjct: 391 TSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHGGDRFLLDTVQTMYPS 450

Query: 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY 525
           LQE  +I ++           +++E+ KEKGN AFK K W KA+  YSEAIKL+  +ATY
Sbjct: 451 LQEYSSIVTDPKSSKKAITKEESAEIAKEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATY 510

Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
           YSNRAAAYLELG F QAEEDC+K I+LDKKNVKAYLRRGTARE L     A++DF++A+V
Sbjct: 511 YSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALV 570

Query: 586 LEPQNKAANLAEKRLRKL 603
           LEP NK A+L+ +RLRK 
Sbjct: 571 LEPNNKRASLSAERLRKF 588

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/423 (47%), Positives = 261/423 (61%), Gaps = 11/423 (2%)

Query: 48  DFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
           DFGAF+E+  + P       ++   L GL FAIKD+FDV+G VTGFG+PDW R H  A  
Sbjct: 6   DFGAFIEKVTISPTSTS---SSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query: 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVA 167
           TA VV+ LL+ GAT +G T++DE A+ I GEN HYGTP NP     +PGGSSSGSAVAVA
Sbjct: 63  TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query: 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
           A+LVDF++GTDT G VRVPAS+CGI G+RPSHG VS +G+ P +QS DTVG  AR+ + L
Sbjct: 123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query: 228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIE-SLSGYQNPEHMN 286
            RVG VLLQ + + P    +LI ADD F+L  VP    +  +  ++E S  G    + +N
Sbjct: 183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query: 287 VGQYIASNVPSLKGLRAQ---STSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP 343
           +G+YI  NVPSLK        +T  E    +L ALSS M  LQR+EFK  +  W+ S KP
Sbjct: 243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query: 344 RLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTK 403
             G  + ER+ EAI T+ + I     V++E+  AL  LL +  +LVIPTV  PP  L   
Sbjct: 303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query: 404 KTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLY 463
                 F  R   L SI  +SG CQV+IP+G +   P+S+S +  +G D FL    L L 
Sbjct: 363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFL----LSLV 418

Query: 464 DSL 466
           DSL
Sbjct: 419 DSL 421

Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 187/416 (44%), Gaps = 48/416 (11%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+  AIKD   V G     GS     + +     A V+  LL  GA  +GKT +DEF
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSK--ILEGYVPPFNAHVIEKLLSAGAVILGKTNMDEF 118

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A G + E  H+G   NP     +PGGSS GSA  VAA    FALG+DT G VR PASFCG
Sbjct: 119 AMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCG 178

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           ++G +P++G VS  GV+  + SL+ VG LA N   +     VL+ + A   RR    I +
Sbjct: 179 VVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDI----AVLMDVIAGYDRRDSTSIDS 234

Query: 252 DDIFQLSKVPKLKTIHV-ISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA---QSTS 307
              +Q + V  +K + + + K       +    H +V + +   +   + L A   + + 
Sbjct: 235 KTEYQKALVDDVKGLKIGVPKEF-----FGEGIHPDVEKAVWDAIHKCESLGATWEEVSM 289

Query: 308 PENGTAT----LKALSSVMLSL-----QRYEFKTIYEEW----VKSAKPRLGYNVFERVL 354
           P    A     + A+S    +L      RY F+   E W     K+     G  V  R+L
Sbjct: 290 PHIKYALASYYIIAMSEASSNLARFDGTRYGFRAGGENWHAMVSKTRAEGFGTEVKRRIL 349

Query: 355 EAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAE 409
                        Y     KVR  ++    + L    +L+ PT+ +P  K+  K      
Sbjct: 350 LGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSKVDLLMAPTMPNPAFKIGEK------ 403

Query: 410 FHD-RTLVLSSIGS----MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVL 460
             D  TL LS I +    ++G   +++P G  +  PI +  +    G  F  +TVL
Sbjct: 404 IEDPLTLYLSDINTCPINLAGVPSISVPCGFTDGLPIGLQIM----GKPFDEETVL 455

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q8THJ1|GATA_METAC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=gatA PE=3 SV=1

 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 184/416 (44%), Gaps = 48/416 (11%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+  AIKD   V G     GS     + +     A V+  LL  GA  +GKT LDEF
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSK--ILEGYVPPFNAHVIEKLLDAGAVILGKTNLDEF 118

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A G + E  +YG   NP     +PGGSS GSA  VAA    FALG+DT G VR PA+FCG
Sbjct: 119 AMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCG 178

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           ++G +P++G VS  GV+  + SL+ VG LA N   +     +L+ + A   RR    I +
Sbjct: 179 VVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDI----AILMDVIAGYDRRDSTSIDS 234

Query: 252 DDIFQLSKVPKLKTIHV-ISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA--QSTSP 308
              +Q + V  +K + + + K       +    H  V + + + +   + L A  Q  S 
Sbjct: 235 KTEYQKALVDDVKGLKIGVPKEF-----FGEGIHPGVEKAVWNAIHKFESLGATRQEVSM 289

Query: 309 ENGTATLKALSSVMLSL----------QRYEFKTIYEEW----VKSAKPRLGYNVFERVL 354
            N    L +   + +S            RY F+   E W     K+     G  V  R+L
Sbjct: 290 PNINYALASYYIIAMSEASSNLARFDGTRYGFRANGENWHAMVSKTRAEGFGTEVKRRIL 349

Query: 355 EAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAE 409
                        Y     KVR  ++    + L    +L+ PT+ +P  ++  K      
Sbjct: 350 LGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSTVDLLMAPTMPNPAFRIGEK------ 403

Query: 410 FHD-RTLVLSSIGS----MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVL 460
             D  TL LS + +    ++G   V++P G  +  P+ +  +    G  F   TVL
Sbjct: 404 IEDPLTLYLSDVNTCPINLAGVPSVSVPCGFTDGLPVGLQIM----GKPFDEPTVL 455

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q2FQM9|GATA_METHJ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 188/408 (46%), Gaps = 34/408 (8%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL+G+  A+KD    KG  T   S   K   +     A VVTLL   GA  +GKT +DEF
Sbjct: 28  PLSGVTVAVKDNISTKGIETTCASKILK--GYIPPYDAHVVTLLKNAGAAIVGKTNMDEF 85

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
             G T EN  YG  +NP     +PGGSS GSA AVAA LVD A+G+DT G +R PA+FCG
Sbjct: 86  GMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCG 145

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL--------------LQL 237
           I+G +P++G VS  G++  + SL+ +G +AR+   L  +  V+               + 
Sbjct: 146 IVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVIAGHDSRDATSVDKPYKH 205

Query: 238 NAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPS 297
           N V      ++   D+ F     P +    V+ +AI++L      E M     +   +PS
Sbjct: 206 NPVSDITGLKIGVPDEFFGEGVNPNVA--EVVRQAIDTL------ESMGA-TAVPCTIPS 256

Query: 298 LK-GLRAQS-TSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLE 355
           +K  L A   T     ++ L     V         K+ ++ + +  K   G  V  R++ 
Sbjct: 257 MKYALSAYYVTCTSEASSNLARFDGVRYGPAVGTLKSWHDAYSEQRKAGFGKEVRRRIIL 316

Query: 356 AINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF 410
              +        Y       R  +R   +R+ +D  ++  PT+ D   KL  K      +
Sbjct: 317 GTFSLAAGYYGRYYQKAQTARQMVRDDFERIFRDVDVIAGPTMPDIAFKLGEKSDPLQMY 376

Query: 411 HDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDT 458
               L + +  +++G   +++P GK N  P+ +  I  +  D+ ++DT
Sbjct: 377 LSDILTVPA--NLAGVPALSVPCGKINSMPVGLQLIGRYFEDERIIDT 422

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanospirillum hungatei (strain JF-1 / DSM 864) (taxid: 323259)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q9JTZ5|GATA_NEIMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=gatA PE=3 SV=1

 Score =  129 bits (325), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 38  RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPD 97
            +NP LNG +         E     +         L G+  A KD+F   G+ +   S  
Sbjct: 33  EKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGIPVAYKDIFCQTGWRSACASK- 91

Query: 98  WKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG 157
              D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+PGG
Sbjct: 92  -MLDNFISPYTATVVQKLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGG 150

Query: 158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV 217
           SS GSA  VAA+L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  
Sbjct: 151 SSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQA 210

Query: 218 GLLARNA 224
           G +A+ A
Sbjct: 211 GPMAQTA 217

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9M003|GATA_NEIM0 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C (strain 053442) GN=gatA PE=3 SV=1

 Score =  129 bits (325), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 38  RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPD 97
            +NP LNG +         E     +         L G+  A KD+F   G+ +   S  
Sbjct: 33  EKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGIPVAYKDIFCQTGWRSACASK- 91

Query: 98  WKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG 157
              D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+PGG
Sbjct: 92  -MLDNFISSYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGATKNPWNPEHVPGG 150

Query: 158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV 217
           SS GSA  VAA+L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  
Sbjct: 151 SSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQA 210

Query: 218 GLLARNA 224
           G +A+ A
Sbjct: 211 GPMAQTA 217

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Neisseria meningitidis serogroup C (strain 053442) (taxid: 374833)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A1KUH8|GATA_NEIMF Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gatA PE=3 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 38  RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPD 97
            +NP LNG +         E     +         L G+  A KD+F   G+ +   S  
Sbjct: 33  EKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASK- 91

Query: 98  WKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG 157
              D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+PGG
Sbjct: 92  -MLDNFISPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGG 150

Query: 158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV 217
           SS GSA  VAA+L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  
Sbjct: 151 SSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQA 210

Query: 218 GLLARNA 224
           G +A+ A
Sbjct: 211 GPMAQTA 217

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) (taxid: 272831)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	605
449438199	606	PREDICTED: outer envelope protein 64, mi	0.998	0.996	0.710	0.0
225448253	607	PREDICTED: outer envelope protein 64, mi	0.998	0.995	0.737	0.0
255569802	607	amidase, putative [Ricinus communis] gi|	0.998	0.995	0.722	0.0
224054324	599	amidase family protein [Populus trichoca	0.985	0.994	0.705	0.0
356512046	603	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.995	0.998	0.695	0.0
356525874	598	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.983	0.994	0.692	0.0
30682691	603	translocon at the outer membrane of chlo	0.995	0.998	0.654	0.0
356557561	665	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.983	0.894	0.696	0.0
297806973	621	hypothetical protein ARALYDRAFT_325494 [	0.990	0.964	0.639	0.0
9955529	616	putative subunit of TOC complex [Arabido	0.995	0.977	0.640	0.0

>gi|449438199|ref|XP_004136877.1| PREDICTED: outer envelope protein 64, mitochondrial-like [Cucumis sativus]

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/605 (71%), Positives = 502/605 (82%), Gaps = 1/605 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS    ++KTN SNPK+W++IGV V G V+LAET RR RN K+    DFGAF++RFEL P
Sbjct: 1   MSNPLKLLKTNASNPKLWILIGVGVAGVVILAETRRRGRNGKVLQGEDFGAFIQRFELRP 60

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FPQP PPAARQ LAGL FA+KDVFDVK YVTGFG+PDWKR H  AE+T  +VTLLLKNGA
Sbjct: 61  FPQPSPPAARQSLAGLTFAVKDVFDVKDYVTGFGNPDWKRTHDVAEKTDEMVTLLLKNGA 120

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
            C+GKTV+DE  FGITGENK YGTP+NP++ S +PGGSSSGSAVAVA +LVDFALGTDT+
Sbjct: 121 ACVGKTVMDELGFGITGENKQYGTPINPKLSSFVPGGSSSGSAVAVAGELVDFALGTDTV 180

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           GC+R+PASFCGI  +RPSHG + M  VL NS SLDTVG  AR+ S LHRVGHVLL+LN+V
Sbjct: 181 GCIRIPASFCGIFAFRPSHGVIPMNRVLSNSPSLDTVGWFARDPSTLHRVGHVLLKLNSV 240

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
           EPRR RRL+ ADD+FQLSKVP  KT+HV+ KAIE+LSGYQ+P+HMN G+Y+ASNVPSLKG
Sbjct: 241 EPRRMRRLVIADDLFQLSKVPLQKTVHVVEKAIENLSGYQSPKHMNFGEYLASNVPSLKG 300

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS + + G   LKALSSVM+ LQR EFK  +EEW+KS KP+LG N  E VL AI T+
Sbjct: 301 FHNQSPTLQKGITILKALSSVMILLQRSEFKINHEEWIKSVKPKLGSNASEDVLAAIKTS 360

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSI 420
            D+IK LYKVR E R AL+ LLKDD ILVIPTV+DPP K +TKK  ++EF DRT  LSSI
Sbjct: 361 YDDIKTLYKVRMETRIALKSLLKDDGILVIPTVADPPPKFSTKKGIASEFRDRTFALSSI 420

Query: 421 GSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIAS-NLVPL 479
            SMSGCC+VA+P+GK ++ PISIS IT+HG DKFLLDTVLD++ +LQEQV +AS NL+P 
Sbjct: 421 SSMSGCCEVAVPLGKQDDCPISISLITFHGADKFLLDTVLDIFSALQEQVGVASNNLLPF 480

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG +DASELLKEKGNAAFKG+QWNKAVNYY++AIKLNGT+ATYY NRAAAYLELGCF
Sbjct: 481 ADTNGDMDASELLKEKGNAAFKGRQWNKAVNYYTDAIKLNGTNATYYCNRAAAYLELGCF 540

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
           QQAE+DCSK I LDKK VKAYLRRGTARE+L  Y EA++DFKHA+VLEPQNK ANLAEKR
Sbjct: 541 QQAEDDCSKAILLDKKTVKAYLRRGTARESLLLYKEAIKDFKHALVLEPQNKVANLAEKR 600

Query: 600 LRKLI 604
           L+KLI
Sbjct: 601 LQKLI 605

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448253|ref|XP_002268888.1| PREDICTED: outer envelope protein 64, mitochondrial [Vitis vinifera] gi|296086830|emb|CBI32979.3| unnamed protein product [Vitis vinifera]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/606 (73%), Positives = 506/606 (83%), Gaps = 2/606 (0%)

Query: 1   MSKSFNIIK--TNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFEL 58
           MSK+ + +K   + SNPK W+VI   V G V+L ET RR+R   L  R   GAF+ERFEL
Sbjct: 1   MSKALHQLKKHIDVSNPKAWIVIAAGVAGIVILVETRRRKRRAALLTREGLGAFVERFEL 60

Query: 59  IPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKN 118
           +PFPQPPPPA+R  L+G KFA+ D+FDVKGYVTGFGS  WKR H EA +TAV VT LLKN
Sbjct: 61  LPFPQPPPPASRLLLSGFKFAVTDIFDVKGYVTGFGSTSWKRTHEEATKTAVAVTALLKN 120

Query: 119 GATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178
           GATC+GKTVLDE +FGITGEN  +G+P NP +PSHIPGGSSSGSAVAVA+QLVDFA+GTD
Sbjct: 121 GATCVGKTVLDELSFGITGENMDFGSPANPVLPSHIPGGSSSGSAVAVASQLVDFAIGTD 180

Query: 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLN 238
           TIG VRVPASFCGILGYRPSHG VS IGVLP+SQSLDTVG  AR+ SILHRVGH+LLQ+N
Sbjct: 181 TIGGVRVPASFCGILGYRPSHGAVSTIGVLPSSQSLDTVGWFARDPSILHRVGHILLQIN 240

Query: 239 AVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL 298
            VEPRR R L+ ADD+FQLSKVPK KT+HV++K  E+LSGYQ P+H+N GQYIASNVPSL
Sbjct: 241 PVEPRRVRNLMIADDLFQLSKVPKQKTVHVVNKVAENLSGYQPPKHVNFGQYIASNVPSL 300

Query: 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAIN 358
           KG   QS + +NG + LKALSSVM+SLQR EFKT +EEWVKS KPRLG  V +RVL AIN
Sbjct: 301 KGFHEQSINVKNGISALKALSSVMISLQRCEFKTNHEEWVKSVKPRLGPEVSDRVLAAIN 360

Query: 359 TTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
           TT +NIKI YKVR EMRAAL  LLKDD ILVIPTV+DPPLKLN+KK   +EFHDR   L 
Sbjct: 361 TTHENIKIFYKVRTEMRAALHSLLKDDGILVIPTVADPPLKLNSKKAVFSEFHDRAFTLL 420

Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVP 478
           SI SMSGCCQV +P+GK+ + PIS+SFI +HG DKFLLDTVLD+Y SLQEQ +I SN +P
Sbjct: 421 SIASMSGCCQVTVPLGKHEDFPISVSFIAFHGADKFLLDTVLDMYPSLQEQASITSNSLP 480

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538
           LPDTNG +DASELLKEKGNAAFKG+QWNKAVNYY+EAIKLN T+ATYY NRAAAYLELGC
Sbjct: 481 LPDTNGDMDASELLKEKGNAAFKGRQWNKAVNYYTEAIKLNETNATYYCNRAAAYLELGC 540

Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
           FQQA EDCSK I LDKKNVKAYLRRGTARE+L CY EA QDFKHA+VLEPQNK ANLAEK
Sbjct: 541 FQQAVEDCSKAILLDKKNVKAYLRRGTARESLLCYKEAAQDFKHALVLEPQNKVANLAEK 600

Query: 599 RLRKLI 604
           RLRKL+
Sbjct: 601 RLRKLM 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569802|ref|XP_002525865.1| amidase, putative [Ricinus communis] gi|223534870|gb|EEF36559.1| amidase, putative [Ricinus communis]

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/606 (72%), Positives = 519/606 (85%), Gaps = 2/606 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLN--GRVDFGAFLERFEL 58
           M+K   +IK + SNPKVW+VIGV+V G +V+AET RR R   L    R DFGAF+E+FE+
Sbjct: 1   MNKPLTLIKQHASNPKVWLVIGVTVAGIIVVAETRRRSRKAALMMIKREDFGAFIEKFEI 60

Query: 59  IPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKN 118
           +PFPQ PPPAA+QPL+GL FAIKD+FDVK YVTGFG+PDW+R H  AE+ AV VT LLKN
Sbjct: 61  LPFPQAPPPAAKQPLSGLSFAIKDIFDVKDYVTGFGNPDWRRTHEVAEKMAVAVTALLKN 120

Query: 119 GATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178
           GATC+GKT++DE   GI+GEN HYGTP+NP MPS +PGGSSSGSAV VAA+LVDFALGTD
Sbjct: 121 GATCVGKTIMDELGLGISGENLHYGTPMNPIMPSFVPGGSSSGSAVTVAAELVDFALGTD 180

Query: 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLN 238
           TIGC+R+PA+FCGI GYRPSHGTVSMIG +PN+QSLDTVG LAR+ SIL  VGH LL+LN
Sbjct: 181 TIGCIRIPAAFCGIFGYRPSHGTVSMIGAIPNAQSLDTVGWLARDPSILRCVGHALLKLN 240

Query: 239 AVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL 298
           AVE R+ARR+IFADD+FQL KVPK KT +VISKAIE+LSGYQ+P+H+N GQYIASNVPSL
Sbjct: 241 AVEARKARRIIFADDLFQLCKVPKQKTEYVISKAIENLSGYQSPKHLNFGQYIASNVPSL 300

Query: 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAIN 358
           KG   QS + ++GT+ LKALSSVM+SLQRYEFKT +EEWVKS KP+L  +V  RVL AIN
Sbjct: 301 KGFLEQSGNLQSGTSALKALSSVMVSLQRYEFKTNHEEWVKSVKPKLAPDVSNRVLAAIN 360

Query: 359 TTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
            T +N+K+LYK+R+EMRAA Q LLKDD ILVIPTV+DPPLKLNTKK YS E HDR ++LS
Sbjct: 361 ATYENVKVLYKIRSEMRAATQSLLKDDGILVIPTVADPPLKLNTKKGYSPESHDRVIILS 420

Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVP 478
           SI SMSGCCQVA+P+GK+++ PIS+SFI++HG DKFLLDT++D+Y SLQ Q++I SN   
Sbjct: 421 SIASMSGCCQVAVPLGKHDDCPISVSFISFHGADKFLLDTIVDMYLSLQAQISIVSNSPL 480

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538
           LPDTNG++DASELLKEKGNAAFKG +WNKAV+YY+EAIKLNG++AT+Y NRAAAYLELGC
Sbjct: 481 LPDTNGNMDASELLKEKGNAAFKGGKWNKAVDYYTEAIKLNGSNATFYCNRAAAYLELGC 540

Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
           FQQAEEDCS  ISLDKKNVKAYLRRGTA+E+L  Y EA QDFKHA+VLEP NKAA  AE+
Sbjct: 541 FQQAEEDCSMAISLDKKNVKAYLRRGTAKESLLYYKEAAQDFKHALVLEPHNKAAREAEE 600

Query: 599 RLRKLI 604
           RLRKL+
Sbjct: 601 RLRKLM 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054324|ref|XP_002298203.1| amidase family protein [Populus trichocarpa] gi|222845461|gb|EEE83008.1| amidase family protein [Populus trichocarpa]

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/602 (70%), Positives = 500/602 (83%), Gaps = 6/602 (0%)

Query: 5   FNIIKTNTSNPKVWV-VIGVSV-VGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP 62
            N +K N  NPKVWV VIGV+V VG V  AET  RRR  K   + DFGAF++RF+++PFP
Sbjct: 1   MNTVKANIKNPKVWVLVIGVTVAVGMVAAAET--RRRKAKF--KEDFGAFVQRFQILPFP 56

Query: 63  QPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122
           QPPPPAA+Q LAGL FAI D+F+++ YVTGFG+PDW R H  AE+TAV VT LLKNGA C
Sbjct: 57  QPPPPAAKQTLAGLTFAINDIFELEDYVTGFGNPDWARTHEAAEKTAVTVTALLKNGAVC 116

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +GKTV+ E  FG++GEN HYGTP+NP+MP+H+PGGSSSGSAVAVAA LVDFALGTDTIGC
Sbjct: 117 VGKTVMGELGFGVSGENIHYGTPINPEMPAHVPGGSSSGSAVAVAAGLVDFALGTDTIGC 176

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           +R+PA+FCG+L YRPSHG VS IG+LPNSQSLDTVG LAR+ SIL RVGH LL+LN VEP
Sbjct: 177 IRIPAAFCGLLSYRPSHGAVSTIGILPNSQSLDTVGWLARDPSILLRVGHTLLKLNTVEP 236

Query: 243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLR 302
           RRARRLIFADD+FQLSKVPK K   VI+KAIE+LSGYQ  +H+N GQ+I+ NVPSLKG  
Sbjct: 237 RRARRLIFADDLFQLSKVPKQKAEVVINKAIENLSGYQPQQHINFGQHISLNVPSLKGFL 296

Query: 303 AQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
            QST+ +NG + LKALSS M+SLQR+EFKT +E+WVKS +P+L  +V + +L AINTT +
Sbjct: 297 DQSTNMQNGISNLKALSSAMVSLQRHEFKTNHEDWVKSVEPKLALDVSDNLLTAINTTHE 356

Query: 363 NIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS 422
           NIK L  +R E+RA +Q LLKDD ILVIPTV+DPP KLN+KK  + E H+R L+LSSI S
Sbjct: 357 NIKALCDIRKELRACMQILLKDDGILVIPTVADPPSKLNSKKRDTVESHNRALILSSIAS 416

Query: 423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDT 482
           MSGCCQV IP+GK +  PIS+SFIT+HGGDKFLLDTVLD+Y SL+EQ+N  SN  PL D 
Sbjct: 417 MSGCCQVTIPLGKNDGCPISVSFITFHGGDKFLLDTVLDMYSSLKEQINFLSNPAPLKDA 476

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           N + DASELLKEKGNAA+KGKQWNKAVNYYSEAIKLNG +ATYYSNRAAAYL+LGCFQ+A
Sbjct: 477 NENFDASELLKEKGNAAYKGKQWNKAVNYYSEAIKLNGKNATYYSNRAAAYLQLGCFQKA 536

Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
           EEDC+  ISLDKKNVKAYLRRGTARE+L  Y +A QDFKHA+VLEPQNK A  AEKRLRK
Sbjct: 537 EEDCNMAISLDKKNVKAYLRRGTARESLLFYKDAAQDFKHALVLEPQNKVARHAEKRLRK 596

Query: 603 LI 604
           L+
Sbjct: 597 LM 598

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512046|ref|XP_003524732.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/604 (69%), Positives = 498/604 (82%), Gaps = 2/604 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS+S  +IK + SNPK+W+VIG+ V G VVL ET RR R  K + + DFGAF+ERFEL+P
Sbjct: 1   MSQSLKLIKEHASNPKLWLVIGIGVAGIVVLVETRRRTRRGKTH-KQDFGAFVERFELLP 59

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FPQPPPPAA+Q L+ L FAI D FDVK YVTGFG+  WK  H  AE+TAVVVT LL +GA
Sbjct: 60  FPQPPPPAAKQSLSALTFAINDTFDVKDYVTGFGNSTWKSTHKAAEKTAVVVTALLMSGA 119

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKTV+DEF+FGI+GENK+YGTP +PQMPS   GGSS GSAVAVAA LVDFA+GTDT 
Sbjct: 120 TCVGKTVVDEFSFGISGENKYYGTPTHPQMPSCKLGGSSCGSAVAVAAGLVDFAVGTDTT 179

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           GCVR+PASFCGI G+RPSHG VS IGVLPN+QSLDT+G  AR+ SILHRVGHVLLQLN+V
Sbjct: 180 GCVRIPASFCGIFGFRPSHGAVSTIGVLPNAQSLDTIGWFARDPSILHRVGHVLLQLNSV 239

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
           E +R+R  IFADD+FQLSK+P   TI+VI KAIE++SGYQ P+H+N+ QYI S VPSL+ 
Sbjct: 240 ETKRSRHFIFADDLFQLSKIPTQNTIYVIGKAIENMSGYQAPKHLNLCQYIDSRVPSLR- 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
           L  QST  +N T+ LK LSSVMLSLQ YEFKT +EEWVKS K +LG  V + V+ AINTT
Sbjct: 299 LHQQSTHQQNETSILKTLSSVMLSLQGYEFKTNHEEWVKSLKYKLGCGVSDHVIAAINTT 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSI 420
            DNIK LYKVR EMR A Q LLKDD ILVIPTV+   LKLNTKK +S+EFHDRT  LSSI
Sbjct: 359 YDNIKALYKVRTEMRGAFQSLLKDDGILVIPTVAGSQLKLNTKKGFSSEFHDRTFALSSI 418

Query: 421 GSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLP 480
            S+SGCCQV IP+G +++  +S+SFI++HG DKFLLDT+LD+Y +LQEQV++ S  +PLP
Sbjct: 419 ASVSGCCQVTIPLGYHDDCSLSVSFISFHGADKFLLDTILDIYSTLQEQVSVGSYSLPLP 478

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           + NG+ + SELLKEKGNAAFK +QW+KA++YYSEAIKLNGT+ TYY NRAAA+L+LGCFQ
Sbjct: 479 NINGNRETSELLKEKGNAAFKERQWSKALSYYSEAIKLNGTNTTYYCNRAAAHLKLGCFQ 538

Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600
           QA EDC K I LDKKNVKAYLRRGTARE+L CY EAL+DFKHA+VLEPQNK A+LAEKRL
Sbjct: 539 QAAEDCGKAILLDKKNVKAYLRRGTARESLLCYEEALEDFKHALVLEPQNKDASLAEKRL 598

Query: 601 RKLI 604
           RKL+
Sbjct: 599 RKLM 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525874|ref|XP_003531546.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/602 (69%), Positives = 490/602 (81%), Gaps = 7/602 (1%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MSK     K N SNPK+W++IG+ + G VV+    RRRR+  L  + DFGAF+ER EL+P
Sbjct: 1   MSKMLK--KVNASNPKLWLLIGIGLAGAVVVVAETRRRRHRNLP-KEDFGAFVERIELLP 57

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
            PQP      Q L+ L FAIKD+FDVKGYVTGFG+P WK+ H EA +TA+V+T LL +GA
Sbjct: 58  IPQP---NQTQTLSALTFAIKDIFDVKGYVTGFGNPQWKKTHGEAGKTAIVITALLSDGA 114

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKTV+DEF+FGI+GENK YGTP NPQMPS IPGGSSSGSAVAVAA+LVDFA+GTDT 
Sbjct: 115 TCVGKTVMDEFSFGISGENKFYGTPTNPQMPSSIPGGSSSGSAVAVAARLVDFAIGTDTT 174

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           GCVR+PA+FCGILG+RPSHG +S IGVLPN+QSLDTVG  AR+ S+LHRVG VLL L +V
Sbjct: 175 GCVRIPAAFCGILGFRPSHGVISTIGVLPNAQSLDTVGWFARDPSVLHRVGLVLLPLTSV 234

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
           E +R RR+IFADD+FQLSK P  KT ++I KAIE+LSGYQ+ +HMN+ QYIASNVPSLKG
Sbjct: 235 ELKRTRRIIFADDLFQLSKAPSQKTAYIIGKAIENLSGYQSLQHMNLCQYIASNVPSLKG 294

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              + T  +NG + LKAL+SVM SLQ YEFKT +EEWVKS KPRLG  V ERV  A+N T
Sbjct: 295 FHEKLTQQQNGLSILKALTSVMFSLQGYEFKTNHEEWVKSVKPRLGRGVSERVNAAMNAT 354

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSI 420
            DNIK LYKVR EMR A Q LLKDD ILVIPTV+D PLKLNT+K +S+EFHDR   LSSI
Sbjct: 355 HDNIKTLYKVRTEMRGAFQHLLKDDGILVIPTVADYPLKLNTEKGFSSEFHDRAFALSSI 414

Query: 421 GSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLP 480
            S+SGCCQVAIP+G +N+   SIS I+ HG DKFLL+TVLD+Y +LQEQV++A  L PL 
Sbjct: 415 ASISGCCQVAIPLGCHNDCCASISLISAHGVDKFLLNTVLDMYSTLQEQVSVAYAL-PLL 473

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           DTNGS++ SELLKEKGN AFKG+ WNKAV+YY+EAI LNGT+ATYYSNRAAAYLELGCFQ
Sbjct: 474 DTNGSMETSELLKEKGNTAFKGRLWNKAVDYYTEAINLNGTNATYYSNRAAAYLELGCFQ 533

Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600
           +AEEDC+  I  DKKNVKAYLRRGTARE L CY EAL+DF+HA+VLEPQNK A+LAEKRL
Sbjct: 534 EAEEDCNMAILHDKKNVKAYLRRGTAREVLLCYKEALKDFQHALVLEPQNKTASLAEKRL 593

Query: 601 RK 602
           RK
Sbjct: 594 RK 595

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682691|ref|NP_196504.2| translocon at the outer membrane of chloroplasts 64-V [Arabidopsis thaliana] gi|357580466|sp|F4KCL7.1|OE64M_ARATH RecName: Full=Outer envelope protein 64, mitochondrial; AltName: Full=Mitochondrial outer membrane protein 64; Short=mtOM64; AltName: Full=Translocon at the outer membrane of chloroplasts 64-V; Short=AtTOC64-V gi|332004008|gb|AED91391.1| translocon at the outer membrane of chloroplasts 64-V [Arabidopsis thaliana]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/605 (65%), Positives = 490/605 (80%), Gaps = 3/605 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS + ++I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MP ++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct: 239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
            ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct: 359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
           QQAE+DC+K + +DKKNVKAYLRRGTARE+L  Y EA  DF+HA+VLEPQNK A +AEKR
Sbjct: 539 QQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKR 598

Query: 600 LRKLI 604
           LRK I
Sbjct: 599 LRKHI 603

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557561|ref|XP_003547084.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/600 (69%), Positives = 492/600 (82%), Gaps = 5/600 (0%)

Query: 3   KSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP 62
           KS  +IK N SNPK+W++IG+ +VG VV+    RRRR  KL  + DFGAF+ERFEL+P P
Sbjct: 68  KSLTLIKVNPSNPKLWLLIGIGLVGAVVVVAETRRRRRRKL-PKPDFGAFVERFELLPIP 126

Query: 63  QPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122
           QP      Q L+ L FAIKD+FDVKGYVTGFG+P WK+ H+EA +TA+V+T LL NGATC
Sbjct: 127 QP---NQTQTLSALTFAIKDIFDVKGYVTGFGNPQWKKMHNEAGKTAIVITALLSNGATC 183

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +GKTV+DEF+FGI+GENK YGTP NPQMPS IPGGSSSGSAVAVAA+LVDFA+GTDT GC
Sbjct: 184 VGKTVMDEFSFGISGENKFYGTPTNPQMPSSIPGGSSSGSAVAVAARLVDFAMGTDTTGC 243

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           VR+PA+FCGILG+RPSHG +S IGVLPN+QSLDTVG  AR+ S+LHRVG VLL LN+VE 
Sbjct: 244 VRIPAAFCGILGFRPSHGVISTIGVLPNAQSLDTVGWFARDPSVLHRVGLVLLPLNSVEL 303

Query: 243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLR 302
           +R RR+IFADD+FQL K P  KT+++I KAIE+LSGYQ P+HMN+ QYIASNVPSLK  R
Sbjct: 304 KRTRRIIFADDLFQLCKAPSQKTVYIIGKAIENLSGYQFPQHMNLCQYIASNVPSLKEFR 363

Query: 303 AQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
            + T  +NG + LKAL+SVM  LQ YEFKT +EEWVKS KPRLG  + ERV  A+N T D
Sbjct: 364 EKFTHQQNGVSILKALTSVMFYLQGYEFKTNHEEWVKSVKPRLGRGMSERVNAAMNATHD 423

Query: 363 NIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS 422
           NIK LYKVR EM  A Q LLKDD ILVIPTV+D PLKLNT+K +S+EF DR   LSSI S
Sbjct: 424 NIKTLYKVRTEMWGAFQHLLKDDGILVIPTVADYPLKLNTEKGFSSEFGDRAFALSSIAS 483

Query: 423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDT 482
           +SGCCQVAIP+G +N+   S+S I+ HG DKFLL+TVLD+Y +LQEQV++A  L PLPDT
Sbjct: 484 ISGCCQVAIPLGCHNDCCASVSLISAHGADKFLLNTVLDMYSTLQEQVSVAYAL-PLPDT 542

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           NGS+  SELLKEKGNAAFKG+ WNKAV+YY+EAI LNGT+ATYYSNRAAAYLELGCFQ+A
Sbjct: 543 NGSMGTSELLKEKGNAAFKGRLWNKAVDYYTEAINLNGTNATYYSNRAAAYLELGCFQEA 602

Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
           EEDC+  I  DKKNVKAYLRRGTARE L  Y EAL+DF+HA+VLEPQNK A+LAEKRLRK
Sbjct: 603 EEDCNMAILHDKKNVKAYLRRGTARELLLRYKEALKDFQHALVLEPQNKTASLAEKRLRK 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806973|ref|XP_002871370.1| hypothetical protein ARALYDRAFT_325494 [Arabidopsis lyrata subsp. lyrata] gi|297317207|gb|EFH47629.1| hypothetical protein ARALYDRAFT_325494 [Arabidopsis lyrata subsp. lyrata]

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/621 (63%), Positives = 490/621 (78%), Gaps = 22/621 (3%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS +  +I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLTLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIKALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+ L F+I D FDVK Y+TGFGSP WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSALTFSISDAFDVKDYITGFGSPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MPS++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPSNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VR+PA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRIPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++HV+ KAIE+LSGYQ P+H+NVGQY+ASNVPSL  
Sbjct: 239 AHRRQRSLIFADDLFELSDIPKQKSVHVVRKAIENLSGYQTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TLKALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLKALSSVMLAIQRHEFKTNHEEWSQTCKSFLGPRFSNDVVTALKSR 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
            ++IK LY+V+ EMRA +Q LLK+D ILVIPTV+DPP KLNTK   S  EF DRT  LSS
Sbjct: 359 NESIKSLYRVKTEMRATIQSLLKEDGILVIPTVADPPPKLNTKNKNSLNEFLDRTYALSS 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+SF+TY+GGDKFLLDT+LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGQHGDRPISVSFLTYYGGDKFLLDTILDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KG+QWNKAVN+Y+EAIKLNG +ATY+ NRAAA+LELGCF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGRQWNKAVNFYTEAIKLNGANATYFCNRAAAFLELGCF 538

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL-------------------QDF 580
           QQAE+DC++ + +DKKNVKAYLRRGTARE+L  Y EA                     DF
Sbjct: 539 QQAEQDCTEAMLIDKKNVKAYLRRGTARESLVRYKEAAAESTLSGTVLERNIWFIISADF 598

Query: 581 KHAMVLEPQNKAANLAEKRLR 601
           +HA+VLEPQNK A  AEKRLR
Sbjct: 599 RHALVLEPQNKTAKAAEKRLR 619

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9955529|emb|CAC05468.1| putative subunit of TOC complex [Arabidopsis thaliana]

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/618 (64%), Positives = 490/618 (79%), Gaps = 16/618 (2%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS + ++I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MP ++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct: 239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
            ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct: 359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL-------------QDFKHAMVL 586
           QQAE+DC+K + +DKKNVKAYLRRGTARE+L  Y EA               DF+HA+VL
Sbjct: 539 QQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAAGYWSVTLWLIISADFRHALVL 598

Query: 587 EPQNKAANLAEKRLRKLI 604
           EPQNK A +AEKRLRK I
Sbjct: 599 EPQNKTAKVAEKRLRKHI 616

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	605
TAIR|locus:2184757	603	TOC64-V "AT5G09420" [Arabidops	0.995	0.998	0.604	6.3e-195
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.919	0.937	0.5	2.9e-142
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.945	0.971	0.487	4.9e-140
TAIR|locus:2036029	425	AMI1 "AT1G08980" [Arabidopsis	0.676	0.962	0.444	3.3e-86
UNIPROTKB|Q60AB7	341	MCA0950 "Amidase family protei	0.203	0.360	0.520	4.9e-41
CGD|CAL0003013	450	orf19.3956 [Candida albicans (	0.276	0.371	0.333	3.5e-22
TIGR_CMR|CBU_1474	483	CBU_1474 "glutamyl-tRNA(Gln) a	0.297	0.372	0.356	9.7e-21
SGD|S000004907	464	HER2 "Subunit of the trimeric	0.277	0.362	0.375	2.7e-20
TIGR_CMR|CJE_1202	453	CJE_1202 "aspartyl/glutamyl-tR	0.687	0.918	0.233	3.8e-19
UNIPROTKB|Q936X3	457	atzE "Biuret hydrolase" [Pseud	0.244	0.323	0.395	6.6e-19

TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1888 (669.7 bits), Expect = 6.3e-195, P = 6.3e-195
 Identities = 366/605 (60%), Positives = 456/605 (75%)

Query:     1 MSKSFNIIKTNTSNPKXXXXXXXXXXXXXXLAETLRRRRNPKLNGRVDFGAFLERFELIX 60
             MS + ++I++N SNPK              LAET R+RR   L    DFGAFL+RFEL+ 
Sbjct:     1 MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query:    61 XXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
                         L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct:    59 FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query:   121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTI 180
             TC+GKT++DE  FGI GENKHYGTP+NP MP ++P             +LVDF+LG DT 
Sbjct:   119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query:   181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
             G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct:   179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query:   241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
               RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct:   239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query:   301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
                QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct:   299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query:   361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
              ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct:   359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query:   420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
             I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct:   419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query:   480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
              DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct:   479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query:   540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
             QQAE+DC+K + +DKKNVKAYLRRGTARE+L  Y EA  DF+HA+VLEPQNK A +AEKR
Sbjct:   539 QQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKR 598

Query:   600 LRKLI 604
             LRK I
Sbjct:   599 LRKHI 603

GO:0004040 "amidase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 278/556 (50%), Positives = 369/556 (66%)

Query:    48 DFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
             DFGAFL + +L+             L+ L FAI D+FD++G+V+ FG P+W R H  A  
Sbjct:    36 DFGAFLLKLKLLPPPPPAPPKAPHPLSSLNFAISDIFDIEGHVSTFGHPEWARTHEPASS 95

Query:   108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXX 167
             TA  V+ L+++GATCIG TV+DE A+GI+GENKH+GTP NP +P+ +P            
Sbjct:    96 TASAVSALVESGATCIGTTVVDELAYGISGENKHFGTPTNPAVPNRVPGGSSSGAAVAVA 155

Query:   168 XQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
                VDF+LG DT G VRVPA FCGILG+RPSHG VS +G++P S SLDTVG  A++  +L
Sbjct:   156 ANFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVL 215

Query:   228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNV 287
              RVGH+LLQ   V  R  R++I ADD FQ   VP  +T  V+ KA E L G Q  +H+N 
Sbjct:   216 RRVGHILLQAPFVMQRNPRQIIIADDCFQHLNVPLDRTSQVVIKATEKLFGKQVLKHINF 275

Query:   288 GQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGY 347
               YI+S V SLK    Q ++    +++LK L++VM SLQR+EF+  + EW+   KP L  
Sbjct:   276 EDYISSKVSSLKACSIQKSNGVLKSSSLKLLANVMQSLQRHEFEHTHSEWMSIVKPDLHP 335

Query:   348 NVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407
              V  ++ E    ++  I+    VR+E+R A+  LLKD+ +LVIPTV+DPP KL  K+  S
Sbjct:   336 AVSAQLHEKFEVSELEIENSKSVRSELRVAVNSLLKDEGVLVIPTVADPPPKLGGKEFLS 395

Query:   408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467
              ++  R L L SI S+SGCCQV +P+G ++++P+S+S I  HGGD+FLLDT+  +Y  LQ
Sbjct:   396 HDYQSRALSLLSIASISGCCQVTVPLGFFDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQ 455

Query:   468 EQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS 527
             EQ +IA+             ++E+ KEKGN A+K KQW KA+ +Y+EAIKL G +ATYYS
Sbjct:   456 EQADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYS 515

Query:   528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
             NRA AYLELG + QAEEDC+  IS DKKNVKAY RRGTARE L  Y EA+ DFK+A+VLE
Sbjct:   516 NRAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLE 575

Query:   588 PQNKAANLAEKRLRKL 603
             P NK A  + +RLRKL
Sbjct:   576 PTNKRAASSAERLRKL 591

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
 Identities = 279/572 (48%), Positives = 367/572 (64%)

Query:    31 LAETLRRRRNPKLNGRVDFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYV 90
             LA  L   +  K   R DFGAF+++  L+             L GL FA+ DVFD+ GYV
Sbjct:    16 LAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTGLTFAVSDVFDITGYV 75

Query:    91 TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQM 150
             TGFG PDW R H  A  T+ VV+ L++ GATC+GKTV+DEFAF I+GENKHY +P NP  
Sbjct:    76 TGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSISGENKHYDSPTNPAA 135

Query:   151 PSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPN 210
             P+ IP               VDFALG DT+G VRVPA +CG+LG++ S+G +S  G++P 
Sbjct:   136 PTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGFKSSYGAISNTGIIPV 195

Query:   211 SQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVIS 270
             S SLD+VG  AR+ + L RVGHVLLQL     R  R++I ADD FQL K+P  +   V++
Sbjct:   196 SSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVT 255

Query:   271 KAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF 330
             K+ E L G Q  +H N+  Y  + VPSLK             +T + L++VM  LQR+EF
Sbjct:   256 KSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTSRLLANVMQLLQRHEF 315

Query:   331 KTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI 390
                + +W+ + KP +   +  +V E    T +  + L  +RNE R A+  LLKDD ILVI
Sbjct:   316 LQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVI 375

Query:   391 PTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHG 450
             PT+   P KL +K+  S ++ +R   L SI S+SGCCQV +P+G + + PIS+SFI  HG
Sbjct:   376 PTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHG 435

Query:   451 GDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVN 510
             GD+FLLDTV  +Y SLQE  +I ++           +++E+ KEKGN AFK K W KA+ 
Sbjct:   436 GDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEKGNQAFKEKLWQKAIG 495

Query:   511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 570
              YSEAIKL+  +ATYYSNRAAAYLELG F QAEEDC+K I+LDKKNVKAYLRRGTARE L
Sbjct:   496 LYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREML 555

Query:   571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
                  A++DF++A+VLEP NK A+L+ +RLRK
Sbjct:   556 GDCKGAIEDFRYALVLEPNNKRASLSAERLRK 587

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 185/416 (44%), Positives = 242/416 (58%)

Query:    48 DFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
             DFGAF+E+   +             L GL FAIKD+FDV+G VTGFG+PDW R H  A  
Sbjct:     6 DFGAFIEK---VTISPTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query:   108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXX 167
             TA VV+ LL+ GAT +G T++DE A+ I GEN HYGTP NP     +P            
Sbjct:    63 TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query:   168 XQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
              +LVDF++GTDT G VRVPAS+CGI G+RPSHG VS +G+ P +QS DTVG  AR+ + L
Sbjct:   123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query:   228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIE-SLSGYQNPEHMN 286
              RVG VLLQ + + P    +LI ADD F+L  VP    +  +  ++E S  G    + +N
Sbjct:   183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query:   287 VGQYIASNVPSLKGLRAQ---STSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP 343
             +G+YI  NVPSLK        +T  E    +L ALSS M  LQR+EFK  +  W+ S KP
Sbjct:   243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query:   344 RLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTK 403
               G  + ER+ EAI T+ + I     V++E+  AL  LL +  +LVIPTV  PP  L   
Sbjct:   303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query:   404 KTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTV 459
                   F  R   L SI  +SG CQV+IP+G +   P+S+S +  +G D FLL  V
Sbjct:   363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLV 418

GO:0004040 "amidase activity" evidence=ISS;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA

GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 325 (119.5 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
 Identities = 64/123 (52%), Positives = 76/123 (61%)

Query:   116 LKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFAL 175
             L+ GA C+GKT  DE AFG+TGEN  YGTP+NP  P  +P               VDFAL
Sbjct:     7 LQAGAVCLGKTCADELAFGLTGENAFYGTPLNPAAPDRVPGGSSSGSAVAVAAGEVDFAL 66

Query:   176 GTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLL 235
             GTDT G +R+PAS CGI G RPSHG VS+ GV P +   DTVG  ARN   L RV  +LL
Sbjct:    67 GTDTAGSIRLPASNCGIWGMRPSHGGVSVAGVNPLAPGFDTVGAFARNGETLQRVMSLLL 126

Query:   236 QLN 238
              ++
Sbjct:   127 NVD 129

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003013 orf19.3956 [Candida albicans (taxid:5476)]

 Score = 282 (104.3 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query:    73 LAGLKFAIKD-VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
             L+G  + +KD +    GY T          ++E+   A+++ LL  NG+  IGK+ LDEF
Sbjct:    39 LSGTTYIVKDNIATSHGYTTAASKI---LSNYESPFNAMIIDLLSSNGSKLIGKSNLDEF 95

Query:   132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
               G    N ++    NP   + +P             ++  F++GTDT G VR+PAS+C 
Sbjct:    96 GMGSANYNSYFNKVTNPYDNTKVPGGSSGGSAASVAGKMCSFSIGTDTGGSVRLPASYCN 155

Query:   192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
             + G++P++G +S  GV+P +Q+LDTVG++  N +I+ RV  VL + +  +P
Sbjct:   156 VFGFKPTYGRISRWGVIPYAQTLDTVGIIGENVNIIKRVYDVLNKYDDKDP 206

GO:0005739 "mitochondrion" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 256 (95.2 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
 Identities = 67/188 (35%), Positives = 88/188 (46%)

Query:    40 NPKLNGRVDFGAFLERFELIXXXXXXXXXX---XXXLAGLKFAIKDVFDVKGYVTGFGSP 96
             NP LN    F +  E + L                 L G+  A KD+F  K   T  GS 
Sbjct:    35 NPTLNS---FISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK 91

Query:    97 DWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPX 156
                 D+  A   A VV  L K GA  IGKT +DEFA G + EN ++G   NP     +P 
Sbjct:    92 --MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPG 149

Query:   157 XXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDT 216
                         +LV  A GTDT G +R PA+ CGI G +P++G VS  G++  + SLD 
Sbjct:   150 GSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQ 209

Query:   217 VGLLARNA 224
              G +A+ A
Sbjct:   210 AGPMAQTA 217

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

SGD|S000004907 HER2 "Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 260 (96.6 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
 Identities = 65/173 (37%), Positives = 92/173 (53%)

Query:    73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
             L G   +IKD    K + T   S     ++ ++   A VV LL + G   +GKT LDEF 
Sbjct:    44 LTGCVASIKDNIVTKDFPTTCASHIL--ENFKSPFDATVVKLLKQAGVHILGKTNLDEFG 101

Query:   133 FGITGENKHYGTPVNPQMPSH---IPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASF 189
              G  G +   G  +NP  P     I               LVDFALGTDT G VR+PA +
Sbjct:   102 MGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACY 161

Query:   190 CGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
               +LG++PS+G +S  GV+  SQSLDTVG+L++  ++L +V H L + +  +P
Sbjct:   162 GSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVFHTLDKYDMKDP 214

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA;IDA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IGI

TIGR_CMR|CJE_1202 CJE_1202 "aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 256 (95.2 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 104/446 (23%), Positives = 179/446 (40%)

Query:    33 ETLRRRRNPKLNGRVDFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTG 92
             E L++  N K       GA++E+F                  G+  AIKD   VKG+   
Sbjct:    16 ENLKKELNEKAKKEKKIGAYIEQF--------LDKDLSVSGEGVPVAIKDNISVKGWELT 67

Query:    93 FGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPS 152
               S   +   + A   A V+  L  NG +  G+  +DEFA G +  + +YG  +NP    
Sbjct:    68 SASKILQG--YIAPYDASVIVNLKANGFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFE 125

Query:   153 HIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ 212
              +P              L   +LG+DT G VR PA+FCG +G++PS+G VS  G+   S 
Sbjct:   126 RVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSS 185

Query:   213 SLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKA 272
             SLD +G+L +N      +   +   + ++   A  + F      L+   KLK I VI   
Sbjct:   186 SLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSAN-IEFIKTAPNLNANKKLK-IAVIENY 243

Query:   273 IESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE--- 329
             +           +     + +N   +       +  +     + A +    +L RY+   
Sbjct:   244 VNDADSEVKNALLKTIDMLKANGHEIVYKNLLDSKFDIAAYYIIATAEASTNLSRYDGVR 303

Query:   330 -------FKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILY-----KVRNEMRAA 377
                     + + E +V +     G  V  R+L             Y     K R  ++A 
Sbjct:   304 YGKRSENIQNLKEMYVNTRSEGFGEEVKRRILLGTFVLSSGYYDAYYIKAQKARAFIKAK 363

Query:   378 LQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYN 437
              + +L+D  ++ +P       K +T+K+    + +    +S   +++G   +++P+ K  
Sbjct:   364 YEEILQDCDLIFMPVTPTTAFKFDTQKSPIQTYLEDVYTISV--NLAGLGGISVPVAKDK 421

Query:   438 EH-PISISFITYHGGDKFLLDTVLDL 462
             E   IS   I     ++ LLD  L L
Sbjct:   422 EGLNISAQLICKAYDEQTLLDGALSL 447

GO:0006422 "aspartyl-tRNA aminoacylation" evidence=ISS

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q936X3 atzE "Biuret hydrolase" [Pseudomonas sp. ADP (taxid:47660)]

 Score = 254 (94.5 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 59/149 (39%), Positives = 78/149 (52%)

Query:    73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
             LAGL +A+K++FD++G  T  GS    R    A   AV+V  L   GA  +G   +DEFA
Sbjct:    66 LAGLPYAVKNLFDIEGVTTLAGSKI-NRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFA 124

Query:   133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
             +G T EN HYG   NP     I                V  +LG+DT G +RVPAS CG+
Sbjct:   125 YGFTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGV 184

Query:   193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLA 221
              G +P+ G +S  G  P   S+D +G LA
Sbjct:   185 WGLKPTFGRLSRRGTYPFVHSIDHLGPLA 213

GO:0018750 "biuret amidohydrolase activity" evidence=IDA

GO:0019381 "atrazine catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MUK5	TOC64_PEA	No assigned EC number	0.5161	0.9636	0.9831	N/A	no
F4KCL7	OE64M_ARATH	No assigned EC number	0.6545	0.9950	0.9983	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	605
PLN02722	422	PLN02722, PLN02722, indole-3-acetamide amidohydrol	1e-164
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	1e-116
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	2e-70
pfam01425	431	pfam01425, Amidase, Amidase	1e-59
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	7e-51
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	5e-48
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	2e-47
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	1e-46
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	8e-46
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	2e-45
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	2e-44
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	5e-44
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	1e-41
PRK05962	424	PRK05962, PRK05962, amidase; Validated	9e-37
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	4e-31
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	1e-28
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	2e-28
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	5e-26
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	1e-24
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	2e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-23
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	3e-23
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	3e-22
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	8e-22
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	6e-21
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	4e-20
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	6e-18
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-16
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	2e-15
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-15
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	5e-14
PRK06565	566	PRK06565, PRK06565, amidase; Validated	6e-14
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	8e-13
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	2e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.003

>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase

 Score =  475 bits (1225), Expect = e-164
 Identities = 213/421 (50%), Positives = 277/421 (65%), Gaps = 6/421 (1%)

Query: 48  DFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
           D+GAF+E+F L     P   +   PL GL FA+KD+FDV+GYVTGFG+PDW R H  A  
Sbjct: 6   DYGAFMEKFVL----SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61

Query: 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVA 167
           TA  V  +L+ GATC+GKT++DE A+ I GEN HYGTP NP  P  +PGGSSSGSAVAV 
Sbjct: 62  TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121

Query: 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
           A+LVDF+LGTDT G VRVPAS+CGI G+RPSHG VS +GV+P +QS DTVG  AR+  IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181

Query: 228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-PEHMN 286
            RVGHVLLQ   V P +  ++I A+D FQLS +P  + + V+ K++E L G  +  +H+N
Sbjct: 182 KRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVN 241

Query: 287 VGQYIASNVPSLKG-LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRL 345
           +G Y+   VPSLK  +  +    E    +L ALSS M  LQRYEFK  + EW+ + KP  
Sbjct: 242 LGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEF 301

Query: 346 GYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKT 405
           G  + ER+ EA+ TT++ I     V+ E+RAAL  LL +  +LVIPTV  PP KL    T
Sbjct: 302 GPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPT 361

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465
               F  R   L SI  +SG CQV+IP+G ++  P+S+S +  HG D FLL+ V  LY +
Sbjct: 362 TLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYGT 421

Query: 466 L 466
           +
Sbjct: 422 I 422

Length = 422

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score =  350 bits (900), Expect = e-116
 Identities = 156/410 (38%), Positives = 204/410 (49%), Gaps = 32/410 (7%)

Query: 49  FGAFLERFELIPFPQPPPPAARQ-PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
           F AF      I  P  P P A   PLAGL+FA+KDVFDV GYVTG G+PDW  +   A R
Sbjct: 7   FNAF------IAKPDKPLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATR 60

Query: 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVA 167
           TA  V  LL  GA  +GKT  DE AF + G+N HYGTPVNP  P  +PGGSSSGSA AVA
Sbjct: 61  TAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVA 120

Query: 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
             L DFALGTDT G VR PASFCG+ G RP+HG +S+ GV+P + S DTVG  AR+ ++L
Sbjct: 121 GGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALL 180

Query: 228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNV 287
            RVG VLL  +A E    +RL+   D+F L                       +P    V
Sbjct: 181 ERVGEVLLGDDAQEFPLTQRLLIPVDLFALL----------------------DPA---V 215

Query: 288 GQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGY 347
              + + +  L+     +        +L         LQ  E    +  W+ S  P+LG 
Sbjct: 216 RAALEAALARLRPHLGPAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGP 275

Query: 348 NVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407
            V +R       T D ++     R      L  LL  D +L++PTV              
Sbjct: 276 GVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEAL 335

Query: 408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
             + +R L L  I  ++G  Q+++P+   +  P  +S I   G D+ LL 
Sbjct: 336 EAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLA 385

Length = 395

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  234 bits (600), Expect = 2e-70
 Identities = 120/448 (26%), Positives = 185/448 (41%), Gaps = 37/448 (8%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAA---------RQPLAGLKF 78
           ++   L R    NP LN      AF+              AA           PLAG+  
Sbjct: 26  LVEAYLARIEALNPDLN------AFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPI 79

Query: 79  AIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGE 138
           A+KD  D  G  T  GS   +   +     A VV  L   GA  +GKT +DEFA G + E
Sbjct: 80  AVKDNIDTAGLPTTAGSKALE--DYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTE 137

Query: 139 NKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPS 198
           N  +G   NP     +PGGSS GSA AVAA LV  ALG+DT G +R+PA+FCG++G +P+
Sbjct: 138 NSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPT 197

Query: 199 HGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLS 258
           +G VS  GV+P + SLD +G LAR       +  V+   +  +            +    
Sbjct: 198 YGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPAL--AG 255

Query: 259 KVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQ----STSPENGTAT 314
           K  K   I V  +      G   P   +V     + V +L+   A+    S    +    
Sbjct: 256 KDLKGLRIGVPKE-----LGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYA 310

Query: 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLE-AINTTQDNIKILYK--VR 371
           L A        +RY  +   + + K+     G  V  R++      +       Y+   +
Sbjct: 311 LAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQK 369

Query: 372 NEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY--SAEFHDRTLVLSSIGSMSGCCQV 429
             +R A  +L ++  +L+ PT   P  K+   ++            V +   +++G   +
Sbjct: 370 TLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAI 429

Query: 430 AIPIGKYNEH-PISISFITYHGGDKFLL 456
           ++P G   +  P+ +  I     D  LL
Sbjct: 430 SVPAGFTADGLPVGLQLIGPAFDDATLL 457

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  204 bits (522), Expect = 1e-59
 Identities = 119/406 (29%), Positives = 177/406 (43%), Gaps = 41/406 (10%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL G+  ++KD  DVKG  T  GS   +   +     A VV  L   GA  +GKT +DEF
Sbjct: 46  PLHGVPISLKDNIDVKGVPTTAGSKALE--GYPPPYDATVVERLRAAGAVILGKTNMDEF 103

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A G T EN  +G   NP   S  PGGSS GSA AVAA LV  A+GTDT G +R+PA+FCG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           ++G +P++G VS  GV+P S SLD VG LAR       +  V+   +  +P  A   +  
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVP- 222

Query: 252 DDIFQLSKVPKLKTIHV----------------ISKAIESLSGYQ-NPEHMNVGQYIASN 294
           D    L K  K   I V                + KA  +L         +     +   
Sbjct: 223 DFAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEALGHEVVEVEPP-SLKHA 281

Query: 295 VPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVL 354
           +P          +P   ++ L  L  +   ++    + + +E     K R+   +    L
Sbjct: 282 LPLYYI-----IAPAEASSNLSDLDELYPRIRD---ELLGDEV----KRRIE--LGAYAL 327

Query: 355 EAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRT 414
            A  +    +K   KVR  +R     L ++  +L+ PT   P  +L      S       
Sbjct: 328 SAGYSGAYYLK-AQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLGE-AADSPTVLYNL 385

Query: 415 LVL---SSIGSMSGCCQVAIPIG-KYNEHPISISFITYHGGDKFLL 456
           L     +   +++G   +++P G   +  P+ +  I   G D+ LL
Sbjct: 386 LDFTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431

Length = 431

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  181 bits (462), Expect = 7e-51
 Identities = 116/414 (28%), Positives = 180/414 (43%), Gaps = 44/414 (10%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGS---PDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
           PLAG+  A+KD    KG VT   S    ++   +      A V+  L + GA  IGKT +
Sbjct: 55  PLAGIPIAVKDNISTKGIVTTCASKILENYIPPYD-----ATVIERLKQAGALIIGKTNM 109

Query: 129 DEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPAS 188
           DEFA G + E   +G   NP     +PGGSS GSA AVAA L  F+LG+DT G +R PAS
Sbjct: 110 DEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPAS 169

Query: 189 FCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRL 248
           FCG++G++P++G VS  G++  + SLD +G  AR    +  +  V+   +  +   A+  
Sbjct: 170 FCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKV- 228

Query: 249 IFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST-- 306
              D  F       LK + V    ++  S   + E         + +  L+ L A+    
Sbjct: 229 --PDPEFFEELKKDLKGLKV--GVVKEFSEEMDKEVQEK---FENALEVLEELGAEIVEV 281

Query: 307 ---SPENGTATLKALSSVMLS--LQRY----------EFKTIYEEWVKSAKPRLGYNVFE 351
                +        +S    S  L RY          E  ++ E + K+     G  V  
Sbjct: 282 SFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKR 341

Query: 352 R-VLEAINTTQDNIKILY----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY 406
           R +L     +       Y    KVR  +     +L ++  ++V PT    P K+  K   
Sbjct: 342 RIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDD 401

Query: 407 SAEFH--DRTLVLSSIGSMSGCCQVAIPIGKYNEH-PISISFITYHGGDKFLLD 457
             E +  D   +L+   +++G   +++P G   +  PI +  I     DK LL 
Sbjct: 402 PLEMYLSD---ILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQ 452

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  173 bits (442), Expect = 5e-48
 Identities = 73/175 (41%), Positives = 94/175 (53%), Gaps = 25/175 (14%)

Query: 72  PLAGLKFAIKDVFDVKGYVT--------GFGSP-DWKRDHHEAERTAVVVTLLLKNGATC 122
           PLAG+  AIKD    KG  T         +  P D           A VV  L   GA  
Sbjct: 55  PLAGIPIAIKDNICTKGIRTTCASKILENYVPPYD-----------ATVVEKLKAAGAVI 103

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +GKT +DEFA G + EN  +G   NP     +PGGSS GSA AVAA L   ALG+DT G 
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
           +R PA+FCG++G +P++G VS  G++  + SLD +G  AR    A++L     GH
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGH 218

Length = 459

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score =  172 bits (438), Expect = 2e-47
 Identities = 81/172 (47%), Positives = 100/172 (58%), Gaps = 6/172 (3%)

Query: 63  QPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122
           +P  P     LAG+ FA+K++FDV G  T  GS    RD   A R A  V  L   GA  
Sbjct: 67  EPLGP-----LAGVPFAVKNLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVL 120

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +G   +DE+A+G T EN HYG   NP   + I GGSS GSA AVAA LV F LG+DT G 
Sbjct: 121 VGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGS 180

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 234
           +RVPAS CGI G +P++G +S  G  P   SLD +G  AR+ + L  V  VL
Sbjct: 181 IRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVL 232

Length = 465

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score =  170 bits (432), Expect = 1e-46
 Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 8/170 (4%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
           AA  PLAG+  ++KD+FDV G VT  GS     D   A   A  V  L + GA  IG+T 
Sbjct: 67  AAPSPLAGIPVSVKDLFDVAGQVTRAGSRVLA-DAPPAAADAPAVARLRRAGAVLIGRTN 125

Query: 128 LDEFAFGITGENKHYGTPVNPQM----PSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCV 183
           + EFAF   G N HYGTP NP         IPGGSSSG+AV+VA  +   ALGTDT G +
Sbjct: 126 MTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGSI 185

Query: 184 RVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV 230
           R+PA+ CG+ G++P+   V + G +P S +LD++G LAR+    +++  V
Sbjct: 186 RIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAV 235

Length = 454

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score =  167 bits (426), Expect = 8e-46
 Identities = 81/153 (52%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            L G+  A KD+FDV G VT  GS     +   A R A VV LL + G   IG+T + EF
Sbjct: 69  LLDGIPIAWKDLFDVAGSVTTAGSV-VLANAAPASRDAAVVALLARAGMVSIGRTNMSEF 127

Query: 132 AFGITGENKHYGTPVNPQMPSH--IPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           AF   G N HYGTPVNP+      IPGGSSSGSAVAVAA LV  A+GTDT G VR+PA+F
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187

Query: 190 CGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
            G++GY+ + G  SM GV P ++SLD++G L R
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCR 220

Length = 452

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score =  166 bits (423), Expect = 2e-45
 Identities = 79/163 (48%), Positives = 100/163 (61%), Gaps = 1/163 (0%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+ FA+K++FDV G  T  G+    RD   A+R A +V  L   GA  +G   +DEF
Sbjct: 64  PLAGVPFAVKNLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEF 122

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A+G T EN HYG   NP   + I GGSS GSA AVAA LV F+LG+DT G +RVPAS CG
Sbjct: 123 AYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCG 182

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 234
           + G +P++G +S  GV P   SLD VG  AR+   L     V+
Sbjct: 183 VFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVM 225

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score =  166 bits (422), Expect = 2e-44
 Identities = 78/177 (44%), Positives = 99/177 (55%), Gaps = 3/177 (1%)

Query: 66  PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK 125
               R PL G+ FA+KD  DV G  T    P +    +  E  A VV LL   GA  +GK
Sbjct: 25  ARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGK 81

Query: 126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRV 185
           T LD+FA G+ G    YG   N   P++I GGSSSGSAVAVA  LV FALGTDT G  RV
Sbjct: 82  TNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRV 141

Query: 186 PASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           PA+   I+G +P+ G VS  GV+P  +SLD V + A   +   +V  +    +A +P
Sbjct: 142 PAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDP 198

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score =  165 bits (421), Expect = 5e-44
 Identities = 78/181 (43%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
            A  PL G+ FA+KD  DV G  T    P +       ER A VV  L   GA  IGKT 
Sbjct: 64  PAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PERDATVVARLRAAGAIVIGKTN 120

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
           LD+FA G+ G    YG   N   P ++ GGSSSGSAVAVA  LV FALGTDT G  RVPA
Sbjct: 121 LDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAGSGRVPA 180

Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARR 247
           +F  I+G +P+ G +S  GV+P  ++LD V + A        V  V+   +  +P  +R 
Sbjct: 181 AFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADP-YSRA 239

Query: 248 L 248
            
Sbjct: 240 N 240

Length = 600

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score =  156 bits (396), Expect = 1e-41
 Identities = 77/194 (39%), Positives = 94/194 (48%), Gaps = 4/194 (2%)

Query: 31  LAETL--RRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKG 88
           L E L  R      LN      A                 A   LAG+   IKD  +  G
Sbjct: 30  LVEALLARAAALAPLNAFTTVDAEGALAAARRIDAQRAAGAALLLAGVPIVIKDNINTAG 89

Query: 89  YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNP 148
             T  G+P            A VV  LL  GA  +GK  + E AFGIT  N  +G   NP
Sbjct: 90  MPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNP 147

Query: 149 QMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL 208
             P+ I GGSS G+A AVAA+L    LGTDT G VR+PA+ CG++G RP+ G  S  GV+
Sbjct: 148 YDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVV 207

Query: 209 PNSQSLDTVGLLAR 222
           P S + DTVG +AR
Sbjct: 208 PISHTRDTVGPIAR 221

Length = 472

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score =  141 bits (358), Expect = 9e-37
 Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 1/151 (0%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL G   +IKD+FDV G  T  GS   +RD   A   A++V  L   GA  IGKT + EF
Sbjct: 45  PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           AF   G N HYG P N   P+ IPGGSSSG+AV+VA    + A+G+DT G VR+PA+  G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
           ++G++P+   + + G  P S SLD++G LAR
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194

Length = 424

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score =  125 bits (317), Expect = 4e-31
 Identities = 101/399 (25%), Positives = 163/399 (40%), Gaps = 49/399 (12%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWK--RDHHEAERTAVVVTLLLKNGATCIGKTVLD 129
           PLA   F IKD F      T   S   +  +  + A     VV  L+  GA  + K   D
Sbjct: 36  PLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNA----TVVQKLINAGAKPVAKVHCD 91

Query: 130 EFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           E   G TG    +G   NP   S + GGSSSGSA A   + + FA+G+DT   VR+PASF
Sbjct: 92  ELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-ATFNKNISFAIGSDTGDSVRLPASF 150

Query: 190 CGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLI 249
            G +G++PS+G +S  G+   + SLDTV     N +    +  VL        +    L 
Sbjct: 151 IGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFG------KDENDLT 204

Query: 250 FADDIFQLSKVPKLKTIHVIS--------------KAIESLSGYQNPEHMNVGQYIASNV 295
             D      K  K K +  +               K I  L      +  N+        
Sbjct: 205 SVDVKINNVKKTKPKKVAYLDCFKELEEYVAKKYKKLINIL------KSENIEVEKIK-- 256

Query: 296 PSLKGLRAQST-----SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVF 350
              K L+A        S    ++ L  L+ +     R +  +  E  + +     G  V 
Sbjct: 257 IDEKLLKAIKPVYKIISYSEASSNLANLNGIAFG-NREKGSSWEEIMINTRSEGFGKMVQ 315

Query: 351 ER-VLEAINTTQDNIKILY----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKT 405
           +R +L +    ++N +  +    KVR  ++   + +     I++ P  +D    ++  + 
Sbjct: 316 KRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENEN 375

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISIS 444
            S  + D  L   +I ++ G   ++IP+GKYN  P +++
Sbjct: 376 KSDNYMDYIL---TISNLVGNPSLSIPLGKYNNLPFNLA 411

Length = 439

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score =  118 bits (299), Expect = 1e-28
 Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
            R PL G+   +K+ F+V G  T +G PD +   +     AV V  L   GA  +GKT +
Sbjct: 72  ERGPLLGIPVTVKESFNVAGLPTTWGFPDLR--DYVPAEDAVAVARLKAAGAVILGKTNV 129

Query: 129 DEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPAS 188
                     N+ YGT  NP   +  PGGSS GSA A+AA     ++G+D  G +RVPA 
Sbjct: 130 PLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAH 189

Query: 189 FCGILGYRPSHGTVSMIG-------VLPNSQSLDTVGLLARNASIL 227
           +CG+  ++P+ G V + G        LP    L   G +AR+A  L
Sbjct: 190 YCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDL 235

Length = 490

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score =  118 bits (298), Expect = 2e-28
 Identities = 62/166 (37%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 66  PPAARQPLAGLKFAIKDVFDVKGYVTGFGS-------PDWKRDHHEAERTAVVVTLLLKN 118
             AA   LAG   A+KD   V G     GS       P            A VVT LL  
Sbjct: 81  KGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEGFVPS---------FDATVVTRLLDA 131

Query: 119 GATCIGKTVLDEFAFGITGENKHYGTPV-NPQMPSHIPGGSSSGSAVAVAAQLVDFALGT 177
           GAT +GK   ++  F   G +     PV NP+ P +  GGSSSGSA  VAA  VD A+G 
Sbjct: 132 GATIVGKATCEDLCFS-GGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGG 190

Query: 178 DTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN 223
           D  G +R+P+++CGI G +P+HG V   G  P  +++D +G +   
Sbjct: 191 DQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTAT 236

Length = 502

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score =  111 bits (279), Expect = 5e-26
 Identities = 69/203 (33%), Positives = 92/203 (45%), Gaps = 15/203 (7%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFP-----QPPPPAARQPLAGLKFAIKD 82
           V+   L    R NP +N  V   A  +R  L+               R  L G+  A KD
Sbjct: 31  VMRAYLAHIERVNPAVNAIV---ALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKD 87

Query: 83  VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHY 142
           +   KG  T  GSP +       +  A+VV  +   GA  IGKT   EF  G    N  Y
Sbjct: 88  LAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVY 145

Query: 143 GTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV 202
           G   NP  PS   GGSS G+A A+A +++  A G+D +G +R PA+F  + G+RPS G V
Sbjct: 146 GATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRV 205

Query: 203 SMIGVLPNS--QSLDTVGLLARN 223
              G   +   Q L T G + R 
Sbjct: 206 PH-GPGGDVFVQQLGTEGPMGRT 227

Length = 484

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score =  106 bits (267), Expect = 1e-24
 Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGS----PD--WKRDHHEAERTAVVVTLLLKNGATCIGK 125
            L G+  +IKD+F  +G+ T  GS     D  W  D       A  V  L + GA  +GK
Sbjct: 71  LLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVD-------APAVARLREAGAVLLGK 123

Query: 126 TVLDEFAF-GITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR 184
           T   EF + G+T ++  YG   NP       GGSS G+A AVA  +   ++GTD  G VR
Sbjct: 124 TTTPEFGWKGVT-DSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVR 182

Query: 185 VPASFCGILGYRPSHGTVSMIGVLPNSQ--SLDTVGLLARNA 224
           +PASFCG  G++P+ G V +    P S   +L  VG + R  
Sbjct: 183 IPASFCGTFGFKPTFGRVPL---YPASPFGTLAHVGPMTRTV 221

Length = 466

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score =  103 bits (258), Expect = 2e-23
 Identities = 63/156 (40%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 70  RQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLD 129
           R PL G+  AIKD  DV G VT +GS         A   A VV  L   GA  IGKT + 
Sbjct: 70  RLPLLGVPIAIKDDVDVAGEVTTYGSAGHGP---AATSDAEVVRRLRAAGAVIIGKTNVP 126

Query: 130 EFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           E       E+  +G   NP  P+  PGGSS GSA AVAA L   ALG+D  G +R+P+++
Sbjct: 127 ELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTW 186

Query: 190 CGILGYRPSHGTVSMIGVLPNS---QSLDTVGLLAR 222
           CG+ G +P    +S+    P+    Q L   G +AR
Sbjct: 187 CGLFGLKPQRDRISL---EPHDGAWQGLSVNGPIAR 219

Length = 462

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 39/100 (39%), Positives = 59/100 (59%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           E L   GN  +K   +++A+ YY +A++L+  +A  Y N AAAY +LG +++A ED  K 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
           + LD  N KAY   G A   L  Y EAL+ ++ A+ L+P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score =  103 bits (258), Expect = 3e-23
 Identities = 61/163 (37%), Positives = 77/163 (47%), Gaps = 21/163 (12%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
            R PL G+  A+KD  DV G  T FG+     +   A   + VV  L   GA  +GKT  
Sbjct: 78  DRLPLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNT 134

Query: 129 DEF---------AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
            E          AFG T          NP    H PGGSS GSA AVAA LV  A+G+D 
Sbjct: 135 CELGQWPFTSGPAFGHTR---------NPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDG 185

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
            G VR+PA++  ++G +P  G +S   +      L   G LAR
Sbjct: 186 AGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLAR 228

Length = 483

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 99.7 bits (249), Expect = 3e-22
 Identities = 57/173 (32%), Positives = 74/173 (42%), Gaps = 8/173 (4%)

Query: 29  VVLAETLRRRR-NPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVK 87
           VV A   R    NP LN           F+        P +     +G+   IKD  DV 
Sbjct: 34  VVEAAIARAEAVNPALNALA-----YAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVA 88

Query: 88  GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVN 147
           G  T  GS  W      A+  +      L  G   +GKT L EF F  + E+   G   N
Sbjct: 89  GLPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRN 146

Query: 148 PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHG 200
           P    +  G SS GSA  VAA +V  A   D  G +R+PA+ CG++G +PS G
Sbjct: 147 PWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRG 199

Length = 468

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 98.7 bits (246), Expect = 8e-22
 Identities = 58/161 (36%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 68  AARQPLAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKT 126
             R PL G+   +KD  D      T  GS       +   R A +V  L   GA  +GK 
Sbjct: 68  KVRGPLHGIPVLLKDNIDAADPMPTTAGS--LALAGNRPTRDAFLVARLRDAGAVILGKA 125

Query: 127 VLDEFA-----FGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIG 181
            L E+A        +G +   G   NP      P GSSSGS  AVAA L   A+GT+T G
Sbjct: 126 NLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDG 185

Query: 182 CVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
            +  PA+  G++G +P+ G VS  G++P S S DT G + R
Sbjct: 186 SITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTR 226

Length = 497

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 96.1 bits (239), Expect = 6e-21
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 61  FPQPPPPAARQPLAGLKFAIKD-VFDVKGYVTGFGS---PDWKRDHHEAERTAVVVTLLL 116
             Q      +  L G+   +KD V   K   T  G+    DW      A++ A +V  L 
Sbjct: 125 LDQERSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWI-----ADQDATIVKQLK 179

Query: 117 KNGATCIGKTVLDEFAFGI-----TGENKHYGTPVNPQMPSHI-PGGSSSGSAVAVAAQL 170
           + GA  +GK  + E+A  +     +G +   G  +NP  P      GSSSGSA  VAA  
Sbjct: 180 EEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADF 239

Query: 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN 223
              A+GT+T G +  PA+   ++G RPS G VS  G++P +++LDT G +AR 
Sbjct: 240 APLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMART 292

Length = 536

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 93.5 bits (233), Expect = 4e-20
 Identities = 61/166 (36%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+   +K   D  G+ T  G    K     A   + VV  L K GA  IG+T    F
Sbjct: 72  PLAGVPVTVKVNVDQAGFATTNGVRLQK--DLIAPADSPVVDNLRKAGAVIIGRTNTPAF 129

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           ++    +N  +G  +NP  PS  PGGSS G+A AVAA +   A GTD  G +R PA  CG
Sbjct: 130 SYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACG 189

Query: 192 ILGYRPSHGTVSM---------IGVLPNSQSLDTVGLLARNASILH 228
           + G RP+ G V           IG     Q +   G LAR  + L 
Sbjct: 190 VHGLRPTLGRVPAYNASSPERPIGA----QLMSVQGPLARTVADLR 231

Length = 469

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 86.8 bits (215), Expect = 6e-18
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 70  RQPLAGLKFAIKDVFDVKGYV-TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
           R PL G+   +KD  +    + T  G+     + H +   A +VT L + GA  +GK  +
Sbjct: 77  RGPLHGIPVLLKDNIETNDSMHTSAGT--IALEQHISSEDAFLVTKLREAGAVILGKANM 134

Query: 129 DEFAFGIT-----GENKHYGTPVNPQ---MPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
            E A  ++     G +   G  +NP          GGSS+GSA+AVAA     ++GT+T 
Sbjct: 135 TELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETD 194

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR---NASIL 227
           G +  PA    ++G +P+ G +S  G++P + S DT G  AR   +A+IL
Sbjct: 195 GSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAIL 244

Length = 491

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEED 545
           D +E LK  GNA FK   +++A+  Y +A++L+  +A  Y N A AYL+LG  +++A ED
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 546 CSKTISLDK 554
             K + LD 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 79.3 bits (195), Expect = 2e-15
 Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGS---PDWKRDHHEAERTAVVVTLLLKNGATCIG 124
             +  L G+   +KD    K   T  G+    DW        + A +V  L  NGA  +G
Sbjct: 225 TNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWV-----IGKDATIVENLKANGALILG 279

Query: 125 KTVLDEFAFGI-----TGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
           KT + E+A G+      G +   G   NP   +  P GSSSGSA A  +     A+GT+T
Sbjct: 280 KTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTET 339

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNA 239
            G +  PAS    +GY+PS G V+  G++P S   DT G L R  +  +   + L    +
Sbjct: 340 NGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTS 399

Query: 240 VEP 242
             P
Sbjct: 400 NPP 402

Length = 615

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 78.5 bits (193), Expect = 3e-15
 Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LKEKGN A++ K +NKA+  YS+AI+       YYSNRAA +  LG +++  ED +  + 
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALE 188

Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA--ANLAEKRLRK 602
           LD    KA  RR  A + L  Y +AL D   + +++       A   E+ L+K
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK 241

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 74.2 bits (183), Expect = 5e-14
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
               PL G+   IK+    +G     G+     D   A   A     L + GA  + KT 
Sbjct: 67  EPLGPLDGVPVTIKENIATRGVPVPLGTA--ATDLPPAAADAPPAARLREAGAVILAKTT 124

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
           + ++    +G +  +G   NP      PGGSS+G+  A AA      LGTD  G VR+PA
Sbjct: 125 MPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPA 184

Query: 188 SFCGILGYRPSHGTV 202
            +CGI+G +PS G +
Sbjct: 185 GWCGIVGLKPSLGRI 199

Length = 464

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 9/156 (5%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL G+ +  KD + VKG     GSP +K     A+R A  +  L   GA C+GKT +   
Sbjct: 75  PLDGIPYTAKDSYLVKGLTAASGSPAFK--DLVAQRDAFTIERLRAAGAICLGKTNMPPM 132

Query: 132 AFGITGENK-HYG---TPVNPQ-MPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186
           A G  G  +  YG   +P N   + +    GSS+G+  A AA    F L  +T    R P
Sbjct: 133 ANG--GMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGP 190

Query: 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
           AS  G+  Y PS G +S+ G  P + ++D V   AR
Sbjct: 191 ASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYAR 226

Length = 566

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 70.6 bits (173), Expect = 8e-13
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 72  PLAGLKFAIKDVF-DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDE 130
           P AG+   +KD+  ++KG ++  GS  +K  +++A +T + V  L   G   +G++   E
Sbjct: 62  PFAGVPIFLKDLGQELKGQLSTSGSRLFK--NYQATKTDLYVKRLEDLGFIILGRSNTPE 119

Query: 131 FAFGITGENKHYGTPVN-PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           F F    ++  +G PVN P   S   GGSS G+A  V++ +V  A  +D  G +R+PASF
Sbjct: 120 FGFKNISDSSLHG-PVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASF 178

Query: 190 CGILGYRPSHGTV 202
            G++G +PS G +
Sbjct: 179 NGLIGLKPSRGRI 191

Length = 482

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           A +L  +K   AF    +  AV+ Y++AI L+  +A  Y++RA A ++LG F +A  D +
Sbjct: 2   AKDLE-DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
           K I LD    KAYLR+GTA   L  Y  A    +    L P        + R  KLI
Sbjct: 61  KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP-------GDSRFTKLI 110

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL-FCYNEALQDF 580
           +A    N   A  +LG + +A E   K + LD  N +AY     A   L   Y EAL+D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 581 KHAMVLEP 588
           + A+ L+P
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D ++       A +K  ++ +A+  Y +A++L+  +A  Y N   AY +LG +++A E  
Sbjct: 32  DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 547 SKTISLDKK 555
            K + LD  
Sbjct: 92  EKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 54.1 bits (128), Expect = 7e-08
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEED 545
           + +E L   G       ++ +A+    +A+KLN    A    N    YL+LG +++A E 
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224

Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
             K + LD  N +A          L  Y EAL+  + A+ L+P
Sbjct: 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
             N    Y +LG + +A E   K + LD  N  AY     A   L  Y EAL+D++ A+ 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 586 LEPQNKAA--NLA 596
           L+P N  A  NL 
Sbjct: 63  LDPDNAKAYYNLG 75

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
            LQ +     + +P         A+ELL  +G A     Q   A   Y +A+ ++  S  
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL- 159

Query: 525 YYSNRAAAYLEL--GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
            Y+    A L L    F +A     + ++ D  NV A L +G    +L     AL  ++ 
Sbjct: 160 -YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218

Query: 583 AMVLEPQNKAANLAE 597
           A+ L P N A  LA 
Sbjct: 219 AIALRPNNIAVLLAL 233

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA-AAYLELGCFQQAEE 544
            + +E L   G       ++ +A+    +A+ L+       +  A  A  ELG +++A E
Sbjct: 92  PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151

Query: 545 DCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
              K + LD +     +A L  G   EAL  Y EAL+  + A+ L P + A  L   
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNL 208

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556
           A    N   AYL+LG + +A E   K + L+  N
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556
           A    N   AYL+LG + +A E   K + LD  N
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 21/84 (25%), Positives = 39/84 (46%)

Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565
           +KA   + +A+KLN      Y +RA  +   G F QA +D  K+I LD   + ++++ G 
Sbjct: 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441

Query: 566 AREALFCYNEALQDFKHAMVLEPQ 589
            +        ++  F+      P+
Sbjct: 442 TQYKEGSIASSMATFRRCKKNFPE 465

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 513 SEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC 572
           S++I+L+      Y  RA+  LELG   +AEED  K + L+ ++   Y  R         
Sbjct: 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414

Query: 573 YNEALQDFKHAMVLEPQN 590
           + +A +D++ ++ L+P  
Sbjct: 415 FAQAGKDYQKSIDLDPDF 432

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 27/94 (28%), Positives = 47/94 (50%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
            + ++A+   S A+ L+       S    AYL LG F++A E  +K   LD +N  A  +
Sbjct: 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
            G ++ +    +EA+ D + A  L+P+   A+L 
Sbjct: 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
           +E L   GNA  K   +++A+ YY +A++L+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 0.003
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEE 544
           D + LL     A  K  +  +A+    +A++  L    A    N       LG +++A E
Sbjct: 57  DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116

Query: 545 DCSKTISLDK--------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
              K ++LD           + A    G   EAL  Y +AL+       L     A    
Sbjct: 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176

Query: 597 EKRLRKL 603
            + L + 
Sbjct: 177 LEALGRY 183

Length = 291

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
            Y +A++L+  +A  Y N A   L LG + +A +
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	605
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PLN02722	422	indole-3-acetamide amidohydrolase	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK09201	465	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK06169	466	putative amidase; Provisional	100.0
PRK07487	469	amidase; Provisional	100.0
PRK07056	454	amidase; Provisional	100.0
PRK05962	424	amidase; Validated	100.0
PRK07486	484	amidase; Provisional	100.0
PRK07042	464	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK08310	395	amidase; Provisional	100.0
PRK07235	502	amidase; Provisional	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK06529	482	amidase; Provisional	100.0
PRK06061	483	amidase; Provisional	100.0
PRK07869	468	amidase; Provisional	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
PRK07139	439	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK06828	491	amidase; Provisional	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PRK06565	566	amidase; Validated	100.0
KOG1211	506	consensus Amidases [Translation, ribosomal structu	100.0
KOG1212	560	consensus Amidases [Translation, ribosomal structu	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.71
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.53
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.48
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.45
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.43
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.4
PRK11189	296	lipoprotein NlpI; Provisional	99.38
KOG1126	638	consensus DNA-binding cell division cycle control	99.35
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.35
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.31
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.29
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.28
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
KOG4234	271	consensus TPR repeat-containing protein [General f	99.24
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.24
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.23
PRK12370	553	invasion protein regulator; Provisional	99.21
PRK15331	165	chaperone protein SicA; Provisional	99.19
PRK12370	553	invasion protein regulator; Provisional	99.19
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.17
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.16
PLN02789	320	farnesyltranstransferase	99.16
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.15
PRK15359	144	type III secretion system chaperone protein SscB;	99.14
PRK11189	296	lipoprotein NlpI; Provisional	99.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.13
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.1
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.1
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.06
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.06
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.03
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.03
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.03
PRK10803	263	tol-pal system protein YbgF; Provisional	99.03
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.02
KOG2076	895	consensus RNA polymerase III transcription factor	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.99
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.99
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.98
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.93
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.93
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.93
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.92
PF13512	142	TPR_18: Tetratricopeptide repeat	98.92
PLN02789	320	farnesyltranstransferase	98.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.9
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.9
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.88
KOG1125	579	consensus TPR repeat-containing protein [General f	98.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.86
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.85
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.84
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.82
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.81
KOG0553	304	consensus TPR repeat-containing protein [General f	98.8
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.8
KOG4555	175	consensus TPR repeat-containing protein [Function	98.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.79
KOG2076	895	consensus RNA polymerase III transcription factor	98.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.78
PF13371	73	TPR_9: Tetratricopeptide repeat	98.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.73
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.72
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
KOG1129	478	consensus TPR repeat-containing protein [General f	98.7
KOG2003	840	consensus TPR repeat-containing protein [General f	98.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.65
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.65
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.64
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.62
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.62
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.61
PRK14574	822	hmsH outer membrane protein; Provisional	98.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.61
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.6
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.59
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.58
PRK14574	822	hmsH outer membrane protein; Provisional	98.56
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.54
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.54
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.54
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.54
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.53
PRK11906	458	transcriptional regulator; Provisional	98.49
PRK11906	458	transcriptional regulator; Provisional	98.48
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.48
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.46
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.45
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.43
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.43
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.41
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.4
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.38
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.33
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.3
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.29
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.28
KOG1129	478	consensus TPR repeat-containing protein [General f	98.27
KOG2003	840	consensus TPR repeat-containing protein [General f	98.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.22
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.2
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.19
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.16
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.16
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.15
PRK15331	165	chaperone protein SicA; Provisional	98.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.13
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.04
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.99
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.98
PF13431	34	TPR_17: Tetratricopeptide repeat	97.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.97
PF12688	120	TPR_5: Tetratrico peptide repeat	97.97
KOG4234	271	consensus TPR repeat-containing protein [General f	97.96
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.95
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.91
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.9
PRK10803	263	tol-pal system protein YbgF; Provisional	97.9
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.86
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.85
PF13428	44	TPR_14: Tetratricopeptide repeat	97.79
KOG4555	175	consensus TPR repeat-containing protein [Function	97.78
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.78
PF13431	34	TPR_17: Tetratricopeptide repeat	97.77
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.74
KOG1310	758	consensus WD40 repeat protein [General function pr	97.73
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.72
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.71
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.7
PF13512	142	TPR_18: Tetratricopeptide repeat	97.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.61
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.44
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.4
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.39
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.34
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.33
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.29
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.26
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.21
KOG2471	696	consensus TPR repeat-containing protein [General f	97.2
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.19
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.17
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.11
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.09
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.06
PRK10941	269	hypothetical protein; Provisional	97.03
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.98
KOG3364	149	consensus Membrane protein involved in organellar	96.95
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.92
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.92
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.91
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.91
PRK10941	269	hypothetical protein; Provisional	96.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.79
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.76
PLN03218	1060	maturation of RBCL 1; Provisional	96.73
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.73
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.71
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.68
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.56
PLN03218	1060	maturation of RBCL 1; Provisional	96.55
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.55
PRK04841	903	transcriptional regulator MalT; Provisional	96.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.48
KOG1586	288	consensus Protein required for fusion of vesicles	96.48
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.44
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.44
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.42
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.41
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.39
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.39
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.39
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.34
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.3
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.22
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.22
KOG1586	288	consensus Protein required for fusion of vesicles	96.22
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.22
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.21
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.2
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.13
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.07
PLN03077	857	Protein ECB2; Provisional	96.05
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.03
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	95.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.98
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.92
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.9
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.89
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.83
PLN03077	857	Protein ECB2; Provisional	95.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.77
PRK04841	903	transcriptional regulator MalT; Provisional	95.74
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.72
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.33
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.28
KOG1585	308	consensus Protein required for fusion of vesicles	95.22
KOG2471	696	consensus TPR repeat-containing protein [General f	95.19
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.14
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.11
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.1
KOG3364	149	consensus Membrane protein involved in organellar	95.1
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.07
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.06
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.94
COG2912	269	Uncharacterized conserved protein [Function unknow	94.81
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.81
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.7
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.65
COG2912	269	Uncharacterized conserved protein [Function unknow	94.6
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.99
KOG1585	308	consensus Protein required for fusion of vesicles	93.9
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.67
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.48
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.42
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.35
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.24
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.23
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.91
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.89
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.82
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.31
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.24
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	92.21
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.17
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.06
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.81
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.77
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.59
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.2
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.18
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.95
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.64
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.46
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.42
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.3
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.2
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.09
KOG2047	835	consensus mRNA splicing factor [RNA processing and	89.77
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.3
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.15
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.68
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.67
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.61
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.3
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.28
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	88.28
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.13
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.11
KOG2300	629	consensus Uncharacterized conserved protein [Funct	87.71
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.58
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.47
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.37
KOG1258	577	consensus mRNA processing protein [RNA processing	87.32
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.29
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.11
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.98
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	86.33
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.57
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.15
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.03
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	84.58
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.58
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	84.26
KOG0529	421	consensus Protein geranylgeranyltransferase type I	83.88
KOG2581	493	consensus 26S proteasome regulatory complex, subun	83.58
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	83.49
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.88
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.26
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.11
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	82.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	81.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	81.87
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	81.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	81.15
COG3947	361	Response regulator containing CheY-like receiver a	81.14
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	80.89

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8e-90  Score=722.77  Aligned_cols=422  Identities=27%  Similarity=0.335  Sum_probs=340.3

Q ss_pred             HHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCC--CCC-------CCCCCCCCCCceEEEeeccCC
Q 007401           21 IGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP--QPP-------PPAARQPLAGLKFAIKDVFDV   86 (605)
Q Consensus        21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~--~a~-------~~~~~gpL~Gvp~~vKD~~~~   86 (605)
                      ++.+|++.     +|++|+++.+++||++.|+.+|||+....+.++.  +|+       .+...|||+||||+|||||+|
T Consensus         8 ~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~   87 (475)
T COG0154           8 TAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDT   87 (475)
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeecccc
Confidence            45555543     9999999999999999999999999999887643  332       235578999999999999999


Q ss_pred             CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 007401           87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV  166 (605)
Q Consensus        87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV  166 (605)
                      +|++||+||+.+.+  +++.+||++|+||++|||||+||||||||+|+.+|+|++||+|+||||++|+||||||||||||
T Consensus        88 ~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSAaAV  165 (475)
T COG0154          88 AGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAV  165 (475)
T ss_pred             CCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence            99999999999975  6779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-----
Q 007401          167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-----  241 (605)
Q Consensus       167 Aag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----  241 (605)
                      |+|++++|||||||||||+|||||||||||||+||||+.|++|+++|+|++|||+|||+|++.+++++.+.+..+     
T Consensus       166 Aag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~~~~  245 (475)
T COG0154         166 AAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPP  245 (475)
T ss_pred             HhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998754332     


Q ss_pred             ---------cccC--ceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCC
Q 007401          242 ---------PRRA--RRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPE  309 (605)
Q Consensus       242 ---------~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~  309 (605)
                               ..+.  .++.++.+.... ....+++.+.+.++++.|+..+        +.+ +..+|.+.....      
T Consensus       246 ~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~G--------a~v~~v~lp~~~~~~~------  310 (475)
T COG0154         246 PPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAG--------AEVVEVSLPLLSDDYA------  310 (475)
T ss_pred             ccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCC--------CEEEeccCCchhhhhh------
Confidence                     1112  345555554321 1234689999999999996333        222 334443221000      


Q ss_pred             CchhHHHHHHHHHHHhhhhhhHhhHHH--HHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHHHHHhCC
Q 007401          310 NGTATLKALSSVMLSLQRYEFKTIYEE--WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEM---RAALQRLLKD  384 (605)
Q Consensus       310 ~~~~~~~~~~~~~~~l~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~---~~~~~~~~~~  384 (605)
                           ...+.   ......+.+..+..  +.......+++++++++..|..++..+|..+...|...   ++.+.++|++
T Consensus       311 -----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~  382 (475)
T COG0154         311 -----LAAYY---LARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEE  382 (475)
T ss_pred             -----hhHHH---HHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 00000   00000011111111  44555677999999999999999999999998888555   9999999999


Q ss_pred             CcEEEEeCCCCCCccCCc-cc-ccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHH
Q 007401          385 DKILVIPTVSDPPLKLNT-KK-TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLD  461 (605)
Q Consensus       385 ~Dvll~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~  461 (605)
                      ||+||+||+|.+||++++ .. .........+..+|.++|++|+|++|||+|++ +|||+|+|+++++++|..|++++..
T Consensus       383 ~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~  462 (475)
T COG0154         383 VDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAA  462 (475)
T ss_pred             CCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHH
Confidence            999999999999999997 21 11111222233589999999999999999998 5999999999999999999999999


Q ss_pred             HHhHHH
Q 007401          462 LYDSLQ  467 (605)
Q Consensus       462 l~~~~~  467 (605)
                      +++...
T Consensus       463 ~E~~~~  468 (475)
T COG0154         463 LEQALG  468 (475)
T ss_pred             HHHhhC
Confidence            988543

>PLN02722 indole-3-acetamide amidohydrolase

Probab=100.00  E-value=9e-89  Score=709.63  Aligned_cols=417  Identities=51%  Similarity=0.868  Sum_probs=336.4

Q ss_pred             cCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEe
Q 007401           44 NGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCI  123 (605)
Q Consensus        44 ~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~  123 (605)
                      +.|+.+|||++.+..+.    ..+...||||||||+|||+|+|+|++||+||+.|.+.+.++.+||++|+||++||||++
T Consensus         2 ~~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiil   77 (422)
T PLN02722          2 ATNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCV   77 (422)
T ss_pred             CcCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEE
Confidence            35778999999864421    11246799999999999999999999999999887433467799999999999999999


Q ss_pred             eecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCcc
Q 007401          124 GKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVS  203 (605)
Q Consensus       124 GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~  203 (605)
                      ||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|||||||||||||+||||
T Consensus        78 GKTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp  157 (422)
T PLN02722         78 GKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVS  157 (422)
T ss_pred             EEechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCC-C
Q 007401          204 MIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-P  282 (605)
Q Consensus       204 ~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~  282 (605)
                      +.|++|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+.......+++.+.+.++++.+.+.+. +
T Consensus       158 ~~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v  237 (422)
T PLN02722        158 TVGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV  237 (422)
T ss_pred             CCCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee
Confidence            999999999999999999999999999999987665555556677776554321122235677788888887765432 2


Q ss_pred             ccccccccccccCcchhhhhhcC-CCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCH
Q 007401          283 EHMNVGQYIASNVPSLKGLRAQS-TSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQ  361 (605)
Q Consensus       283 ~~~~l~~~v~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  361 (605)
                      +..++...++...+.+..+...+ ...+...+.+..+...+..+..+|+...+..+++..+..+++.++.+++.+..++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~  317 (422)
T PLN02722        238 KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTE  317 (422)
T ss_pred             eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCH
Confidence            22223222222223232221111 01111122233333444456666777788888887778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCc
Q 007401          362 DNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPI  441 (605)
Q Consensus       362 ~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~  441 (605)
                      .+|.++++.|.++++.+.++|+++|+||+||+|.+||+++........+...++.+|.++|++|+|++|||+|..+|+|+
T Consensus       318 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv  397 (422)
T PLN02722        318 EKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV  397 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCE
Confidence            99999999999999999999999999999999999998874322222333355668999999999999999999899999


Q ss_pred             eeEEeeccCCchhHHhHHHHHHh
Q 007401          442 SISFITYHGGDKFLLDTVLDLYD  464 (605)
Q Consensus       442 g~~~~~~~~~d~~ll~~a~~l~~  464 (605)
                      |+|+++++++|..+++++..+..
T Consensus       398 Glqivg~~~~D~~lL~~a~~l~~  420 (422)
T PLN02722        398 SVSLLAKHGSDGFLLNLVESLYG  420 (422)
T ss_pred             EEEEECCCCChHHHHHHHHHHHh
Confidence            99999999999999999988765

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=1.9e-88  Score=718.74  Aligned_cols=407  Identities=25%  Similarity=0.363  Sum_probs=336.7

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~   99 (605)
                      +.+|++|+++.+++||++.||.+|||++..+++++++|+       .+...||||||||+|||||+++|++||+||+.+.
T Consensus        12 g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~   91 (452)
T TIGR02715        12 GRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINR   91 (452)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhc
Confidence            449999999999999999999999999998887766553       3556799999999999999999999999999987


Q ss_pred             hcCCCC-CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccC
Q 007401          100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD  178 (605)
Q Consensus       100 ~~~~~~-~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD  178 (605)
                      +  .++ .+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+|||
T Consensus        92 ~--~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtD  169 (452)
T TIGR02715        92 D--LAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSD  169 (452)
T ss_pred             c--CCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeC
Confidence            5  455 6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 007401          179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------  242 (605)
Q Consensus       179 ~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------  242 (605)
                      ||||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.                
T Consensus       170 tgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~  249 (452)
T TIGR02715       170 TNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPA  249 (452)
T ss_pred             CCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999886432211                


Q ss_pred             -ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401          243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (605)
Q Consensus       243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  321 (605)
                       .++.++.+..+.+  ....++++.++++++++.|....         .+  ..|.....                 ...
T Consensus       250 ~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~---------~v--~~~~~~~~-----------------~~~  299 (452)
T TIGR02715       250 GISGLRIAVLGGWF--QQNADPEALAAVGRVAKALGATT---------IV--ELPDAERA-----------------RAA  299 (452)
T ss_pred             CCCCCEEEEECccc--cCCCCHHHHHHHHHHHHhcCCee---------ee--cCCchHHH-----------------HHH
Confidence             1223555554433  12246788999999988873211         11  12221110                 011


Q ss_pred             HHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCC
Q 007401          322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN  401 (605)
Q Consensus       322 ~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  401 (605)
                      +..+...+....+..+++...+.+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+++
T Consensus       300 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  379 (452)
T TIGR02715       300 AFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIG  379 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCc
Confidence            11222334444455566556677899999999988889999999999999999999999999999999999999999987


Q ss_pred             cccc--c--chhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          402 TKKT--Y--SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       402 ~~~~--~--~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      ....  .  ...+...+..||.+||++|+|++|||+|..+|+|+|+|+++++++|..+|+++..+++.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~  447 (452)
T TIGR02715       380 QETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ  447 (452)
T ss_pred             ccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            5211  1  11111233458999999999999999999899999999999999999999999998864

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK09201 amidase; Provisional

Probab=100.00  E-value=2.7e-88  Score=719.26  Aligned_cols=406  Identities=26%  Similarity=0.360  Sum_probs=336.7

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~   99 (605)
                      +.+|++|+++.+++||++.|+.+|||++..+++++++|+       .+...||||||||+|||+|+++|++||+||+.+.
T Consensus        19 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~   98 (465)
T PRK09201         19 GELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINR   98 (465)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccccCCcccCcCChhhc
Confidence            449999999999999999999999999998887766553       3556799999999999999999999999999987


Q ss_pred             hcCCCC-CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccC
Q 007401          100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD  178 (605)
Q Consensus       100 ~~~~~~-~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD  178 (605)
                      +  .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||
T Consensus        99 ~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAaG~~~~alGtD  176 (465)
T PRK09201         99 D--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSD  176 (465)
T ss_pred             c--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEecC
Confidence            5  455 6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 007401          179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------  242 (605)
Q Consensus       179 ~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------  242 (605)
                      ||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+.                
T Consensus       177 tgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~  256 (465)
T PRK09201        177 TNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEPTAPLLDR  256 (465)
T ss_pred             CCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999986532211                


Q ss_pred             -ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401          243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (605)
Q Consensus       243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  321 (605)
                       .++.++.+..+.+  ....++++.++++++++.|.....         +  ..|.....                 ...
T Consensus       257 ~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~~---------v--~~~~~~~~-----------------~~~  306 (465)
T PRK09201        257 GAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALGATRE---------V--ELPEAARA-----------------RAA  306 (465)
T ss_pred             CCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHccCcee---------e--cCCchhHH-----------------HHH
Confidence             1123555554433  122467899999999888732110         1  11221100                 011


Q ss_pred             HHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCC
Q 007401          322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN  401 (605)
Q Consensus       322 ~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  401 (605)
                      +..+...|....+..+++.....+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++
T Consensus       307 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~  386 (465)
T PRK09201        307 AFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIG  386 (465)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccc
Confidence            11222334444555565555667899999999999889999999999999999999999999999999999999999987


Q ss_pred             cccc---c-chhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHh
Q 007401          402 TKKT---Y-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYD  464 (605)
Q Consensus       402 ~~~~---~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~  464 (605)
                      +...   . ...+...+..||.+||++|+|++|||+|..+|+|+|+|+++++++|..+|+++..+++
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~  453 (465)
T PRK09201        387 QETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQ  453 (465)
T ss_pred             ccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHh
Confidence            5321   0 1111223445899999999999999999889999999999999999999999999876

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-87  Score=709.94  Aligned_cols=413  Identities=30%  Similarity=0.399  Sum_probs=334.9

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~   99 (605)
                      +.+|++|+++.+++||++.|+ +|||++..+++++++|+       .+..+||||||||+|||+|+|+|++||+||+.+.
T Consensus        18 g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~   96 (452)
T PRK06102         18 GALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLA   96 (452)
T ss_pred             CCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCCccCcCChhhc
Confidence            449999999999999999986 89999998877666553       3556799999999999999999999999999987


Q ss_pred             hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCC--CCCCCCCchHHHHHHHhcCCceeecc
Q 007401          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMP--SHIPGGSSSGSAVAVAAQLVDFALGT  177 (605)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~--~~~~GGSSgGsaaaVAag~~~~a~Gt  177 (605)
                      + +.++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||+  +|+|||||||||||||+|++|+++||
T Consensus        97 ~-~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAaaVAaG~~~~alGt  175 (452)
T PRK06102         97 N-AAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGT  175 (452)
T ss_pred             c-CCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHHHHHcCCCceEEec
Confidence            5 23347999999999999999999999999999999999999999999996  79999999999999999999999999


Q ss_pred             CCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceeeeccc
Q 007401          178 DTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLIFADD  253 (605)
Q Consensus       178 D~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~~~~~  253 (605)
                      ||||||||||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.    ..+.++.+..+
T Consensus       176 DtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~~~ri~~~~~  255 (452)
T PRK06102        176 DTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPET  255 (452)
T ss_pred             CCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccccCCCCCEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999998876532221    12234555444


Q ss_pred             hhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHh
Q 007401          254 IFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKT  332 (605)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~  332 (605)
                      .+  ....++++.+.+.++++.|+..+.        .|+ ...|.+.+...              ....+..+...|...
T Consensus       256 ~~--~~~~~~~v~~~~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~--------------~~~~~~~~~~~e~~~  311 (452)
T PRK06102        256 VV--FDDAEPGVRAAFEAAVERLQAAGA--------LVERQAFPAFQEILD--------------LIARHGWLVTAEAFA  311 (452)
T ss_pred             hh--cccCCHHHHHHHHHHHHHHHhCCC--------EEEecCCccHHHHHH--------------HHHHHHHHHHHHHHH
Confidence            32  123467899999999998864332        222 12333321110              000111122234444


Q ss_pred             hHHHHHHh-cCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhh-
Q 007401          333 IYEEWVKS-AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF-  410 (605)
Q Consensus       333 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~-  410 (605)
                      .+..++.. ....+++.++.+++.+..++..+|.++++.|.++++.+.++|+ +|+||+||+|.+||++++.......+ 
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~  390 (452)
T PRK06102        312 LHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFF  390 (452)
T ss_pred             HHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhh
Confidence            45454443 3456889999999988889999999999999999999999999 89999999999999987522111111 


Q ss_pred             --hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          411 --HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       411 --~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                        ...++.||.+||++|+|++|||+|.. +|+|+|+|+++++++|..+++++..+++.+
T Consensus       391 ~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l  449 (452)
T PRK06102        391 ATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVI  449 (452)
T ss_pred             hhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence              12334589999999999999999987 899999999999999999999999998755

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=2.5e-87  Score=712.88  Aligned_cols=416  Identities=19%  Similarity=0.221  Sum_probs=335.6

Q ss_pred             HHHHhhh-----hHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCC
Q 007401           21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG   88 (605)
Q Consensus        21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G   88 (605)
                      ++.+|+.     .+|++|+++.+++||++.||.+|||++..+++++++|+       .+..+||||||||+|||||+|+|
T Consensus         8 ~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   87 (466)
T PRK06169          8 TAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRG   87 (466)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecccccCC
Confidence            5555553     39999999999999999999999999998877665543       34567999999999999999999


Q ss_pred             cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHh
Q 007401           89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA  168 (605)
Q Consensus        89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa  168 (605)
                      ++||+||+.+.+ +.++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus        88 ~~tt~Gs~~~~~-~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa  166 (466)
T PRK06169         88 WPTLRGSRAIDA-DGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVAL  166 (466)
T ss_pred             cccCccChhhcc-CCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHc
Confidence            999999999874 3455799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 007401          169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------  242 (605)
Q Consensus       169 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------  242 (605)
                      |++|+|+|||||||||+|||||||||||||+||||+.|+.|.+ ++|++|||+|+++|++.+++++.+.+..+.      
T Consensus       167 G~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~~~~~~~  245 (466)
T PRK06169        167 GMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWSALPPP  245 (466)
T ss_pred             CCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCCcccCCC
Confidence            9999999999999999999999999999999999999998886 899999999999999999999876432110      


Q ss_pred             -----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCc
Q 007401          243 -----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG  311 (605)
Q Consensus       243 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~  311 (605)
                                 .++.++.+..+..  ....++++.++++++++.|+..+        +.|++..+++....         
T Consensus       246 ~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~---------  306 (466)
T PRK06169        246 TTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALG--------ARVEEVDPGFSDPV---------  306 (466)
T ss_pred             CcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcC--------CEEEEeCCCcchHH---------
Confidence                       1223555543322  12246789999999999986333        22221112211100         


Q ss_pred             hhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 007401          312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP  391 (605)
Q Consensus       312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P  391 (605)
                              ..+..+...+....+..+.......+++.++.+++.+..++..+|.++.+.|+.+++.|.++|+++|+||+|
T Consensus       307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~P  378 (466)
T PRK06169        307 --------EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTP  378 (466)
T ss_pred             --------HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeC
Confidence                    011111111222233333333445688999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCcccccc--hhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          392 TVSDPPLKLNTKKTYS--AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       392 t~~~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      |+|.+||+++......  ......+..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..|++++..+++.
T Consensus       379 t~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~  455 (466)
T PRK06169        379 TLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQA  455 (466)
T ss_pred             CCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhh
Confidence            9999999987532111  11112334589999999999999999987 89999999999999999999999998774

>PRK07487 amidase; Provisional

Probab=100.00  E-value=3.4e-87  Score=711.61  Aligned_cols=421  Identities=20%  Similarity=0.220  Sum_probs=336.3

Q ss_pred             hHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeecc
Q 007401           17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF   84 (605)
Q Consensus        17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~   84 (605)
                      ++..|+.+|+..     +|++|+++.+++||++.|+.+|||++..+++++++|+       .+..+||||||||+|||+|
T Consensus         5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~   84 (469)
T PRK07487          5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNV   84 (469)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEeccc
Confidence            344467776644     8999999999999999999999999998887766553       2456799999999999999


Q ss_pred             CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (605)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (605)
                      +|+|++||+||+.+.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        85 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsAa  162 (469)
T PRK07487         85 DQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAA  162 (469)
T ss_pred             ccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence            9999999999999875  67889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCcc----C-CCCCccccccccCHHHHHHHHHHHccCCC
Q 007401          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP----N-SQSLDTVGLLARNASILHRVGHVLLQLNA  239 (605)
Q Consensus       165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p----~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~  239 (605)
                      |||+|++|+|||||||||||||||||||||||||+||||+.|+++    + +.++|++|||+||++|++.+++++.+.+.
T Consensus       163 AVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d~  242 (469)
T PRK07487        163 AVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPDP  242 (469)
T ss_pred             HHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999863    3 34789999999999999999999986543


Q ss_pred             CCc----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc--cCcchhhhhhcCCC
Q 007401          240 VEP----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQSTS  307 (605)
Q Consensus       240 ~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~--~~p~~~~~~~~~~~  307 (605)
                      .++          ..+.++.+..+.+.  ...++++.+.++++++.|+..+        +.+++  ..|.+.+.      
T Consensus       243 ~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~~------  306 (469)
T PRK07487        243 RDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAG--------WTVEEVDDTPPLREA------  306 (469)
T ss_pred             CCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCC--------CEEEecCCCCchHHH------
Confidence            221          12345666544331  2246789999999999886333        22221  22332211      


Q ss_pred             CCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhc-CCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401          308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVKSA-KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDK  386 (605)
Q Consensus       308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D  386 (605)
                                 ...+..+...+....+..+.... .+.+.+.+...++.+..++..+|.++++.|..+++.+.++|+++|
T Consensus       307 -----------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  375 (469)
T PRK07487        307 -----------AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYP  375 (469)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                       11112222233334444443332 234556666666777788999999999999999999999999999


Q ss_pred             EEEEeCCCCCCccCCcccccchhhhh--chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHh
Q 007401          387 ILVIPTVSDPPLKLNTKKTYSAEFHD--RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYD  464 (605)
Q Consensus       387 vll~Pt~~~~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~  464 (605)
                      +||+||+|.+||+++........+..  ....+|.++|++|+|++|||+|..+|||+|+|+++++++|..+++++..+++
T Consensus       376 ~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~  455 (469)
T PRK07487        376 LLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEA  455 (469)
T ss_pred             EEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999998743211112211  1112477899999999999999999999999999999999999999999987


Q ss_pred             HH
Q 007401          465 SL  466 (605)
Q Consensus       465 ~~  466 (605)
                      .+
T Consensus       456 ~~  457 (469)
T PRK07487        456 RG  457 (469)
T ss_pred             hh
Confidence            54

>PRK07056 amidase; Provisional

Probab=100.00  E-value=3.4e-87  Score=708.76  Aligned_cols=413  Identities=28%  Similarity=0.359  Sum_probs=339.9

Q ss_pred             hhHHHHHHHHHhhcCcccCCCC-cCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVD-FGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDW   98 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~   98 (605)
                      +.+|++|+++.+++||++.|+. +|||++...++++++|+       .+...||||||||+|||+|+++|++||+||+.+
T Consensus        18 g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~   97 (454)
T PRK07056         18 GRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVL   97 (454)
T ss_pred             CCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccCCCccCCCChhh
Confidence            4499999999999999999975 99999998777666553       355679999999999999999999999999998


Q ss_pred             hhcCCCC-CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCC----CCCCCCCCCchHHHHHHHhcCCce
Q 007401           99 KRDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQ----MPSHIPGGSSSGSAVAVAAQLVDF  173 (605)
Q Consensus        99 ~~~~~~~-~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~----~~~~~~GGSSgGsaaaVAag~~~~  173 (605)
                      .+  .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+|||    |++|+|||||||||||||+|++|+
T Consensus        98 ~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGsAaaVAag~~~~  175 (454)
T PRK07056         98 AD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAA  175 (454)
T ss_pred             cc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHHHHHHHcCCCce
Confidence            75  455 68999999999999999999999999999999999999999999    899999999999999999999999


Q ss_pred             eeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceee
Q 007401          174 ALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLI  249 (605)
Q Consensus       174 a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~  249 (605)
                      ++|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.++.++    .++.++.
T Consensus       176 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~lrig  255 (454)
T PRK07056        176 ALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVPAARPLEGLRLA  255 (454)
T ss_pred             EEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccccCcEEE
Confidence            999999999999999999999999999999999999999999999999999999999999987654332    1234566


Q ss_pred             eccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhh
Q 007401          250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRY  328 (605)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  328 (605)
                      +..+.+  ....++++.+.++++++.|+..+.        .| +...|.+.....              +. ....+...
T Consensus       256 ~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~--------------~~-~~~~~~~~  310 (454)
T PRK07056        256 VPTTVV--LDGLDATVAAAFERALKRLSAAGA--------IIEEIAFPELAELAE--------------IN-AKGGFSAA  310 (454)
T ss_pred             Ecchhh--ccCCCHHHHHHHHHHHHHHHHCCC--------EEEEecCcchHHHHH--------------HH-HhhhHHHH
Confidence            655432  122467899999999998864332        11 122233221110              00 00112223


Q ss_pred             hhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccch
Q 007401          329 EFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA  408 (605)
Q Consensus       329 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~  408 (605)
                      |....+..+.......+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||++++......
T Consensus       311 e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~  390 (454)
T PRK07056        311 ESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDA  390 (454)
T ss_pred             HHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccch
Confidence            34444555665566678999999999998899999999999999999999999999999999999999999875321111


Q ss_pred             hhhh---chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          409 EFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       409 ~~~~---~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      .+..   .++.||.+||++|+|++|||+|..+|+|+|+|+++++++|..+++++..+++.+
T Consensus       391 ~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l  451 (454)
T PRK07056        391 AFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVL  451 (454)
T ss_pred             hhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            2211   233479999999999999999988999999999999999999999999998755

>PRK05962 amidase; Validated

Probab=100.00  E-value=2e-86  Score=696.87  Aligned_cols=406  Identities=24%  Similarity=0.350  Sum_probs=330.9

Q ss_pred             HHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCC-CC
Q 007401           36 RRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA-ER  107 (605)
Q Consensus        36 ~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~-~~  107 (605)
                      +.+++||++.|+.+|||++.++++++++|+       .+...||||||||+|||||+|+|++||+||+.+.+  .++ .+
T Consensus         2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~   79 (424)
T PRK05962          2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGA   79 (424)
T ss_pred             HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcC
Confidence            568899999999999999998877666553       34567999999999999999999999999999875  455 68


Q ss_pred             ChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhh
Q 007401          108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA  187 (605)
Q Consensus       108 da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PA  187 (605)
                      ||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+++|||||||||+||
T Consensus        80 dA~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPA  159 (424)
T PRK05962         80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPA  159 (424)
T ss_pred             ChHHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC----cccCceeeeccchhhhcCCchh
Q 007401          188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE----PRRARRLIFADDIFQLSKVPKL  263 (605)
Q Consensus       188 a~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~  263 (605)
                      +||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+    ...+.++.+..+.+  ....++
T Consensus       160 a~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~  237 (424)
T PRK05962        160 ALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEP  237 (424)
T ss_pred             HhhCceeeecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCH
Confidence            999999999999999999999999999999999999999999999987654322    11234566554433  122467


Q ss_pred             hHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcC
Q 007401          264 KTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK  342 (605)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~  342 (605)
                      ++.+.+.++++.|+..+.        .|+ ...|.+.+.             +.... ....+...+....+..+.+...
T Consensus       238 ~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~-------------~~~~~-~~~~~~~~e~~~~~~~~~~~~~  295 (424)
T PRK05962        238 DVAAAFEASLAALEKAGA--------RIADLAIDDLIAR-------------LAEAT-RIGSIAGIEASHIHADWLADLD  295 (424)
T ss_pred             HHHHHHHHHHHHHHHCCC--------EEEEeccchHHHH-------------HHHHH-HHhHHHHHHHHHHHHHHHhhch
Confidence            899999999998863322        221 122221100             00000 0011223344445555666666


Q ss_pred             CCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhh---hhchhhhcc
Q 007401          343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF---HDRTLVLSS  419 (605)
Q Consensus       343 ~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~  419 (605)
                      ..+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++........+   ...++.||.
T Consensus       296 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~  375 (424)
T PRK05962        296 ANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQ  375 (424)
T ss_pred             hhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCc
Confidence            77899999999999889999999999999999999999999999999999999999987532211111   122345899


Q ss_pred             cccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHHHH
Q 007401          420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQE  468 (605)
Q Consensus       420 ~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e  468 (605)
                      ++|++|+|++|||+|. +|+|+|+|+++++++|..+++++..+++.+.+
T Consensus       376 ~~n~~G~Pa~svP~g~-~glPvGlqlvg~~~~D~~lL~~a~~le~~l~~  423 (424)
T PRK05962        376 VANQFDLCSITLPMPG-MALPAGLMLTARNGSDRRLLAAAASVEKLLEH  423 (424)
T ss_pred             CccccCCCeEEEECCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999984 79999999999999999999999999886543

>PRK07486 amidase; Provisional

Probab=100.00  E-value=2.5e-86  Score=708.47  Aligned_cols=421  Identities=22%  Similarity=0.259  Sum_probs=332.2

Q ss_pred             HHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccC-CCCCCC-------CCCCCCCCCCceEEEeeccC
Q 007401           19 VVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELI-PFPQPP-------PPAARQPLAGLKFAIKDVFD   85 (605)
Q Consensus        19 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-a~~~a~-------~~~~~gpL~Gvp~~vKD~~~   85 (605)
                      ..++.+|+..     +|++|+++.+++||.+.|+.+|||++...++ ++++|+       .+...||||||||+|||+|+
T Consensus        11 ~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   90 (484)
T PRK07486         11 RLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAP   90 (484)
T ss_pred             hCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEecccc
Confidence            3366666644     8999999999999999999999999986533 334332       34567999999999999999


Q ss_pred             CCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 007401           86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVA  165 (605)
Q Consensus        86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaa  165 (605)
                      |+|++||+||+.+.+  .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||
T Consensus        91 v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa  168 (484)
T PRK07486         91 TKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAA  168 (484)
T ss_pred             cCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHH
Confidence            999999999999875  678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCc-cCCCCCccccccccCHHHHHHHHHHHccCCCCCc--
Q 007401          166 VAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--  242 (605)
Q Consensus       166 VAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--  242 (605)
                      ||+|++++|||||||||||+|||||||||||||+||||+.|.+ ++++++|++|||+||++|++.+++++.+.+..++  
T Consensus       169 VAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~  248 (484)
T PRK07486        169 LALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLS  248 (484)
T ss_pred             HHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999999999999999999999999999999999998755 6889999999999999999999999886532211  


Q ss_pred             ---------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCC
Q 007401          243 ---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTS  307 (605)
Q Consensus       243 ---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~  307 (605)
                                     ..+.++.+..+.+. ....++++.++++++++.|+..+        +.|++..+.+..       
T Consensus       249 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~-------  312 (484)
T PRK07486        249 LAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELG--------CDVEAALPAFPP-------  312 (484)
T ss_pred             ccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCcch-------
Confidence                           12235555443321 11246788999999999986333        222222122110       


Q ss_pred             CCCchhHHHHHHHHHHHhhhhhhHhhHHHHHH--hcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007401          308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDD  385 (605)
Q Consensus       308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~  385 (605)
                              ....+.+..+...+..........  .....+++.++.+++.+..++..+|.++++.|..+++.+.++|+++
T Consensus       313 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~  384 (484)
T PRK07486        313 --------ERLWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERY  384 (484)
T ss_pred             --------HHHHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    000011111111111111112221  1235678999999988888999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCccCCccc-----ccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHH
Q 007401          386 KILVIPTVSDPPLKLNTKK-----TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTV  459 (605)
Q Consensus       386 Dvll~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a  459 (605)
                      |+||+||+|.+||+++...     .........++.+|.++|++|+|++|||+|.. +|+|+|+|+++++++|..+++++
T Consensus       385 D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a  464 (484)
T PRK07486        385 DFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLA  464 (484)
T ss_pred             CEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHH
Confidence            9999999999998876421     00111112334578899999999999999987 89999999999999999999999


Q ss_pred             HHHHhH
Q 007401          460 LDLYDS  465 (605)
Q Consensus       460 ~~l~~~  465 (605)
                      ..+++.
T Consensus       465 ~~le~~  470 (484)
T PRK07486        465 HAYEQA  470 (484)
T ss_pred             HHHHhc
Confidence            998774

>PRK07042 amidase; Provisional

Probab=100.00  E-value=3.2e-86  Score=704.00  Aligned_cols=414  Identities=18%  Similarity=0.158  Sum_probs=331.4

Q ss_pred             HHHHhh-----hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCC
Q 007401           21 IGVSVV-----GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG   88 (605)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G   88 (605)
                      ++.+|+     +.+|++|+++.+++||++.|+.+|||++...++++++|+       .+..+||||||||+|||+|+|+|
T Consensus         8 ~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   87 (464)
T PRK07042          8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRG   87 (464)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcccccCC
Confidence            455555     348999999999999999999999999998887766554       35567999999999999999999


Q ss_pred             cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHh
Q 007401           89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA  168 (605)
Q Consensus        89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa  168 (605)
                      ++||+||..+.+  .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus        88 ~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa  165 (464)
T PRK07042         88 VPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA  165 (464)
T ss_pred             cccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHc
Confidence            999999999864  677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 007401          169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------  242 (605)
Q Consensus       169 g~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------  242 (605)
                      |++|+|||||||||||+|||||||||||||+||||+.|..    +.|++|||+|+++|++.+++++.+.+..+.      
T Consensus       166 G~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~  241 (464)
T PRK07042        166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGTSLPPQ  241 (464)
T ss_pred             CCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCccccCCC
Confidence            9999999999999999999999999999999999998843    358999999999999999999876432211      


Q ss_pred             ----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcch-hhhhhcCCCCCCc
Q 007401          243 ----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL-KGLRAQSTSPENG  311 (605)
Q Consensus       243 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~-~~~~~~~~~~~~~  311 (605)
                                ..+.++.+..+... ....++++.++++++++.|+..+        +.+++..|.+ ..+          
T Consensus       242 ~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~----------  302 (464)
T PRK07042        242 DIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAG--------AIVEPVPPFLTRAM----------  302 (464)
T ss_pred             CcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCchhHHH----------
Confidence                      12235555443321 11246789999999999886333        2222111211 111          


Q ss_pred             hhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 007401          312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP  391 (605)
Q Consensus       312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P  391 (605)
                             .+.+..+...+....+..+.+.....+.+.++.+++.+..++..+|.+++..|..+++.+.++|+++|+||+|
T Consensus       303 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~P  375 (464)
T PRK07042        303 -------LDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSP  375 (464)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcC
Confidence                   0001111111222333344444556788999999998889999999999999999999999999999999999


Q ss_pred             CCCCCCccCCccccc-chhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          392 TVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       392 t~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      |+|.+||+++..... ........+.||.+||++|+|++|||+|.. +|+|+|+|+++++++|..+|+++..+++..
T Consensus       376 t~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~  452 (464)
T PRK07042        376 VAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR  452 (464)
T ss_pred             CCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence            999999988642211 111111223589999999999999999987 899999999999999999999999988753

>PRK06170 amidase; Provisional

Probab=100.00  E-value=4.4e-86  Score=708.47  Aligned_cols=421  Identities=22%  Similarity=0.272  Sum_probs=332.7

Q ss_pred             hhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC------CCCCCCCCCceEEEeecc
Q 007401           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVF   84 (605)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~------~~~~gpL~Gvp~~vKD~~   84 (605)
                      ++...++.+|+++     +|++|+++.+++||++.|+.+|||++..+++++++|+.      ....||||||||+|||+|
T Consensus         8 ~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VKD~~   87 (490)
T PRK06170          8 EWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVKESF   87 (490)
T ss_pred             hhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEeccc
Confidence            3444577777755     89999999999999999999999999988877666531      124699999999999999


Q ss_pred             CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (605)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (605)
                      +|+|++||+||+.|.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        88 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa  165 (490)
T PRK06170         88 NVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAA  165 (490)
T ss_pred             ccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHHHH
Confidence            9999999999999975  67889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCcc-----C--CCCCccccccccCHHHHHHHHHHHccC
Q 007401          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP-----N--SQSLDTVGLLARNASILHRVGHVLLQL  237 (605)
Q Consensus       165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p-----~--~~~~d~~G~~ar~~~d~~~v~~~~~~~  237 (605)
                      |||+|++|+|+|||||||||+|||||||||||||+||||+.|++|     +  +.++|++|||+||++|++.+++++.+.
T Consensus       166 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l~g~  245 (490)
T PRK06170        166 ALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMAGP  245 (490)
T ss_pred             HHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999988     4  346899999999999999999999865


Q ss_pred             CCCCc---------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccccc---Ccchh
Q 007401          238 NAVEP---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN---VPSLK  299 (605)
Q Consensus       238 ~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~---~p~~~  299 (605)
                      +..+.               .++.|+.+..+.+  ....++++.++++++++.|+..+        +.|++.   .|.+.
T Consensus       246 d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~  315 (490)
T PRK06170        246 DPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP--LLPTDAAVRAAIERLAAALADAG--------ARVVRHSPLLPDLA  315 (490)
T ss_pred             CccccccccccCCCcccccccCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEcCCCCCchH
Confidence            32210               0223555554432  12346789999999999886333        222111   22222


Q ss_pred             hhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhH-----HHHHHh--cCCCCChhHHHHHHHHhcCCHHHHHHHHHHHH
Q 007401          300 GLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIY-----EEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRN  372 (605)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~  372 (605)
                      +..                 ..+..+...+....+     ......  ....+.+.++.++..+..++..+|.++++.|.
T Consensus       316 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~  378 (490)
T PRK06170        316 ESA-----------------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAARE  378 (490)
T ss_pred             HHH-----------------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHH
Confidence            111                 111111111111100     110000  12235566777777888889999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCCCccCCccccc------c----hhhhhchhhhcccccccCCceeeeecccC-CCCCc
Q 007401          373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY------S----AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPI  441 (605)
Q Consensus       373 ~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~  441 (605)
                      .+++.+.++|+++|+||+||+|.+||+++.....      .    ..+. ..+.||.++|++|+|++|||+|+. +|+|+
T Consensus       379 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPv  457 (490)
T PRK06170        379 ELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPV  457 (490)
T ss_pred             HHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCce
Confidence            9999999999999999999999999998753110      0    0111 223589999999999999999987 89999


Q ss_pred             eeEEeeccCCchhHHhHHHHHHhHH
Q 007401          442 SISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       442 g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      |+|+++++++|..||+++..+++.+
T Consensus       458 GlQlig~~~~D~~LL~~a~~lE~~~  482 (490)
T PRK06170        458 GVQIVGPALEDRTPLRLAELLEEEF  482 (490)
T ss_pred             eEEEecCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998743

>PRK12470 amidase; Provisional

Probab=100.00  E-value=3.9e-86  Score=701.33  Aligned_cols=419  Identities=20%  Similarity=0.217  Sum_probs=330.2

Q ss_pred             hHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeecc
Q 007401           17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF   84 (605)
Q Consensus        17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~   84 (605)
                      ++..++.+|+.+     +|++|+++.+++||++.|+.+|||+...+++++++|+       .+... |||||||+|||+|
T Consensus         6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~~   84 (462)
T PRK12470          6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDDV   84 (462)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecCc
Confidence            344467777755     8999999999999999999999999998887766553       23344 9999999999999


Q ss_pred             CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (605)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (605)
                      +++|++||+||+.+ .  .++.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        85 ~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa  161 (462)
T PRK12470         85 DVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAA  161 (462)
T ss_pred             ccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHHH
Confidence            99999999999975 2  57889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC---
Q 007401          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE---  241 (605)
Q Consensus       165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---  241 (605)
                      |||+|++|+|||||||||||||||||||||||||+||||+.|++|+++++|++|||+|+|+|++.+++++.+.+..+   
T Consensus       162 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~~  241 (462)
T PRK12470        162 AVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEF  241 (462)
T ss_pred             HHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987543211   


Q ss_pred             ------cccCceeeeccchhh-hcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhH
Q 007401          242 ------PRRARRLIFADDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTAT  314 (605)
Q Consensus       242 ------~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~  314 (605)
                            ...+.++.+..+.+. .....++++.+.++++++.|+..+        +.+++..|.+....            
T Consensus       242 ~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~------------  301 (462)
T PRK12470        242 VAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLG--------HDVVVRDPDYPAAT------------  301 (462)
T ss_pred             hhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCC--------CEEEEeCCCchhHH------------
Confidence                  112345555544321 112246789999999999986333        22221112211000            


Q ss_pred             HHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 007401          315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVS  394 (605)
Q Consensus       315 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~  394 (605)
                      ...+...+     ....... .........+++.++.++..+..++..+|.....++..+++.+.++|+++|+||+||+|
T Consensus       302 ~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p  375 (462)
T PRK12470        302 YANYLPRF-----FRGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTA  375 (462)
T ss_pred             HHHHHHHH-----HHHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCC
Confidence            00000000     0000000 01112345678999999999998898888755555558999999999999999999999


Q ss_pred             CCCccCCccccc--chh--hhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          395 DPPLKLNTKKTY--SAE--FHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       395 ~~ap~~~~~~~~--~~~--~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      .+||+++.....  ...  ....+..||.++|++|+|++|||+|.+ +|||+|+|+++++++|..||+++..+++.
T Consensus       376 ~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~  451 (462)
T PRK12470        376 TGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA  451 (462)
T ss_pred             CCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence            999998743211  111  112334589999999999999999987 89999999999999999999999998764

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=4.2e-86  Score=703.89  Aligned_cols=416  Identities=27%  Similarity=0.359  Sum_probs=324.9

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCC--CCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA--ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHE  104 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~--~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~  104 (605)
                      +.+|++|+++.+++||++.|+.+|||++..+++++++|+...  ..||||||||+|||+|+|+|++||+||+.|.+  .+
T Consensus         8 g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~   85 (460)
T TIGR00132         8 KEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YI   85 (460)
T ss_pred             CCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CC
Confidence            558999999999999999999999999998877666554221  12899999999999999999999999999975  57


Q ss_pred             CCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccc
Q 007401          105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR  184 (605)
Q Consensus       105 ~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR  184 (605)
                      +.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||
T Consensus        86 ~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIR  165 (460)
T TIGR00132        86 PPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIR  165 (460)
T ss_pred             CCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcch
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------ccCce
Q 007401          185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------------RRARR  247 (605)
Q Consensus       185 ~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------------~~~~~  247 (605)
                      +||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.                 ..+.+
T Consensus       166 iPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lr  245 (460)
T TIGR00132       166 QPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLK  245 (460)
T ss_pred             hhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCE
Confidence            9999999999999999999999999999999999999999999999999886532211                 12234


Q ss_pred             eeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhh
Q 007401          248 LIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR  327 (605)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  327 (605)
                      +.+..+.+.   ..++++.+++.++++.|+..+.       +.++...|.+......+        ......+....+..
T Consensus       246 ig~~~~~~~---~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~~~--------~~~~~~e~~~~~~~  307 (460)
T TIGR00132       246 VGVVKEFSE---EMDKEVQEKFENALEVLEELGA-------EIVEVSFPHVKYALPIY--------YIISPSEASSNLAR  307 (460)
T ss_pred             EEEECcccc---cCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH--------HHHHHHHHHHHHhc
Confidence            555444321   2457888999999998864332       11122233332111100        00000011110111


Q ss_pred             h---------hhHhhHHHHHHh-cCCCCChhHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Q 007401          328 Y---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDKILVIPT  392 (605)
Q Consensus       328 ~---------e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt  392 (605)
                      +         .....+.+++.. ....+++.++.++..+...+     ..+|.++++.|.++++.+.++|+++|+||+||
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt  387 (460)
T TIGR00132       308 YDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPT  387 (460)
T ss_pred             cccccccccccccccHHHHHhhcchhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCC
Confidence            1         001112233332 23457788888876665443     34488999999999999999999999999999


Q ss_pred             CCCCCccCCccccc-chhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHh
Q 007401          393 VSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYD  464 (605)
Q Consensus       393 ~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~  464 (605)
                      +|.+||++++.... ...+. . ..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..+|+++..+++
T Consensus       388 ~~~~a~~~~~~~~~~~~~~~-~-~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~  459 (460)
T TIGR00132       388 APTLPFKIGEKLDDPLEMYL-S-DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ  459 (460)
T ss_pred             CCCCCCCcccccCchHhhhc-c-cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence            99999999753211 11111 1 1379999999999999999988 8999999999999999999999998864

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK08310 amidase; Provisional

Probab=100.00  E-value=5.4e-85  Score=679.69  Aligned_cols=390  Identities=40%  Similarity=0.632  Sum_probs=320.3

Q ss_pred             CCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeee
Q 007401           46 RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK  125 (605)
Q Consensus        46 ~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GK  125 (605)
                      ++.+|||+...+.-     ..++..||||||||+|||+|+++|++||+||+.|.+.+.++.+||++|+|||+||||++||
T Consensus         4 ~~~~~a~~~~~~~~-----~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK   78 (395)
T PRK08310          4 HDPFNAFIAKPDKP-----LPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK   78 (395)
T ss_pred             CCccccccccCCCC-----CCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence            46799999986531     1245779999999999999999999999999998643457789999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCC
Q 007401          126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI  205 (605)
Q Consensus       126 t~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~  205 (605)
                      ||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+++|||||||||+||+||||||||||+||||+.
T Consensus        79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~  158 (395)
T PRK08310         79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE  158 (395)
T ss_pred             ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccc
Q 007401          206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHM  285 (605)
Q Consensus       206 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~  285 (605)
                      |+.|+++++|++|||+||++|++.+++++.+.+..+...+.++.+..+.+   ...++++.++++++++.|+...     
T Consensus       159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~-----  230 (395)
T PRK08310        159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHL-----  230 (395)
T ss_pred             CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhC-----
Confidence            99999999999999999999999999999875433332345666655433   2246788899999998885311     


Q ss_pred             cccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHH
Q 007401          286 NVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK  365 (605)
Q Consensus       286 ~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  365 (605)
                        ++.++...+..               .+..+...+..+...+....+..+.+.....+++.++.+++.+..++..+|.
T Consensus       231 --g~vv~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  293 (395)
T PRK08310        231 --GPAKPASVPPL---------------SLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVE  293 (395)
T ss_pred             --CceeeecCCcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHH
Confidence              11121111110               0111112222233334455566666666677899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEE
Q 007401          366 ILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISF  445 (605)
Q Consensus       366 ~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~  445 (605)
                      ++.+.|..+++.+.++|+++|+||+||+|.+||+++........+...++.||.++|++|+|+++||+|..+|+|+|+|+
T Consensus       294 ~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQi  373 (395)
T PRK08310        294 AARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSL  373 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEE
Confidence            99999999999999999999999999999999998754222222223344689999999999999999988999999999


Q ss_pred             eeccCCchhHHhHHHHHHhH
Q 007401          446 ITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       446 ~~~~~~d~~ll~~a~~l~~~  465 (605)
                      ++++++|..+++++..+++.
T Consensus       374 vg~~~~D~~lL~~a~~le~~  393 (395)
T PRK08310        374 IGPRGSDRSLLALAQTIAAA  393 (395)
T ss_pred             ECCCCCHHHHHHHHHHHHhh
Confidence            99999999999999998763

>PRK07235 amidase; Provisional

Probab=100.00  E-value=8e-85  Score=694.66  Aligned_cols=417  Identities=21%  Similarity=0.251  Sum_probs=332.6

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR  100 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~  100 (605)
                      +.+++.|+++..++++...++..|++.....++++..|.      .+...||||||||+|||||+|+|+|||+||+.+.+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~  115 (502)
T PRK07235         36 ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG  115 (502)
T ss_pred             hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC
Confidence            569999999999999999999999999887777655442      45678999999999999999999999999999975


Q ss_pred             cCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCC
Q 007401          101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI  180 (605)
Q Consensus       101 ~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~g  180 (605)
                        .++.+||++|+||++|||||+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++|+|||||||
T Consensus       116 --~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtG  193 (502)
T PRK07235        116 --FVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQG  193 (502)
T ss_pred             --CCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCC
Confidence              678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCcc-----------------
Q 007401          181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPR-----------------  243 (605)
Q Consensus       181 GSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~-----------------  243 (605)
                      ||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++.                 
T Consensus       194 GSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~  273 (502)
T PRK07235        194 GSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRG  273 (502)
T ss_pred             CCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccC
Confidence            999999999999999999999999999999999999999999999999999999875432211                 


Q ss_pred             -cCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHH-H
Q 007401          244 -RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALS-S  320 (605)
Q Consensus       244 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~-~  320 (605)
                       .+.++.+..+.+.. ...++++.++++++++.|+..++        .|++ .+|........          +..+. +
T Consensus       274 ~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~--------~V~~v~~p~~~~~~~~----------~~~~~~~  334 (502)
T PRK07235        274 VKGLKIGILREGFGL-PNSEPEVDEAVRAAAKRLEDLGA--------TVEEVSIPLHRLALAI----------WNPIATE  334 (502)
T ss_pred             CcCCEEEEeccccCC-CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchhhHHHH----------HHHHHHH
Confidence             12245554433311 12357899999999999864332        2222 22322111000          00000 0


Q ss_pred             HH-H-Hhh------------hhhhHhhHHHHHHhcCCCCChhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHh
Q 007401          321 VM-L-SLQ------------RYEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRNEMRAALQRLL  382 (605)
Q Consensus       321 ~~-~-~l~------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~a~~~r~~~~~~~~~~~  382 (605)
                      .. . .+.            ..++...+..+.......+++.++.++..+.    .++..+|.++++.|+++++.++++|
T Consensus       335 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~  414 (502)
T PRK07235        335 GATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEAL  414 (502)
T ss_pred             HHHHHhhhccccccccccccchhHHHHHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 0 000            0011122222233344568899998887665    3577899999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCccCCcccccchhhhh---chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHH
Q 007401          383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTV  459 (605)
Q Consensus       383 ~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a  459 (605)
                      +++|+||+||+|.+||+++........+..   .+..||.+||++|+|++|||+|+.+|||+|+|+++++++|..+++++
T Consensus       415 ~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A  494 (502)
T PRK07235        415 RKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAA  494 (502)
T ss_pred             hcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHH
Confidence            999999999999999998753222222221   23457999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 007401          460 LDLYD  464 (605)
Q Consensus       460 ~~l~~  464 (605)
                      ..+++
T Consensus       495 ~~~E~  499 (502)
T PRK07235        495 AAFEA  499 (502)
T ss_pred             HHHHh
Confidence            99876

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=2.4e-85  Score=698.75  Aligned_cols=419  Identities=26%  Similarity=0.313  Sum_probs=331.7

Q ss_pred             hhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeec
Q 007401           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDV   83 (605)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~   83 (605)
                      ++...++++|+.+     +|++|+++.+++||++.+ .+|||++..+++++++|+       .+...| ||||||+|||+
T Consensus         7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD~   84 (472)
T PRK07488          7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKDN   84 (472)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEcc
Confidence            3444577777755     899999999999999876 699999998877666553       234456 99999999999


Q ss_pred             cCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 007401           84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA  163 (605)
Q Consensus        84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa  163 (605)
                      |+|+|++||+||+.|.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++++|||||||||
T Consensus        85 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  162 (472)
T PRK07488         85 INTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA  162 (472)
T ss_pred             cccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence            99999999999999875  5678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-
Q 007401          164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-  242 (605)
Q Consensus       164 aaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-  242 (605)
                      ||||+|++|+|||||||||||+|||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. 
T Consensus       163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~~  242 (472)
T PRK07488        163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAP  242 (472)
T ss_pred             HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887543221 


Q ss_pred             --ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHH
Q 007401          243 --RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALS  319 (605)
Q Consensus       243 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~  319 (605)
                        ..+.++.+..+.+  ....++++.++++++++.|+..+.        .| +...|.+.++...               
T Consensus       243 ~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~---------------  297 (472)
T PRK07488        243 VALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGV--------TFVELDLPGLHELNEA---------------  297 (472)
T ss_pred             cCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCC--------EEEeeCCcCHHHHhhh---------------
Confidence              2334566654332  122467889999999998863332        22 1222332211000               


Q ss_pred             HHHHHhhhhhhHhhHHHHHHhcC----------CCCChhHHHHHHHH---hcCCHHHHHHHHHH-HHHHHHHHHHHhC--
Q 007401          320 SVMLSLQRYEFKTIYEEWVKSAK----------PRLGYNVFERVLEA---INTTQDNIKILYKV-RNEMRAALQRLLK--  383 (605)
Q Consensus       320 ~~~~~l~~~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~s~~~~~~a~~~-r~~~~~~~~~~~~--  383 (605)
                       ....+..++....+..++....          ...++.++.+++.+   ..++..+|.++++. |..+++.+.++|+  
T Consensus       298 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~  376 (472)
T PRK07488        298 -VGFPIALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARH  376 (472)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence             0011122233333333332221          12256666655433   35788999999888 9999999999998  


Q ss_pred             CCcEEEEeCCCCCCccCCcccc------cchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHH
Q 007401          384 DDKILVIPTVSDPPLKLNTKKT------YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL  456 (605)
Q Consensus       384 ~~Dvll~Pt~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll  456 (605)
                      ++|+||+||+|.+||++++...      ....+ ..++.+|.++|++|+|++|||+|++ +|+|+|+|+++++++|..|+
T Consensus       377 ~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL  455 (472)
T PRK07488        377 GLDAILFPTTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLL  455 (472)
T ss_pred             CCCEEEeCCCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHH
Confidence            7899999999999999975311      11122 2344579999999999999999987 89999999999999999999


Q ss_pred             hHHHHHHhH
Q 007401          457 DTVLDLYDS  465 (605)
Q Consensus       457 ~~a~~l~~~  465 (605)
                      +++..+++.
T Consensus       456 ~~A~~lE~~  464 (472)
T PRK07488        456 AIGRALERV  464 (472)
T ss_pred             HHHHHHHHh
Confidence            999999874

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=1.1e-85  Score=700.55  Aligned_cols=414  Identities=25%  Similarity=0.330  Sum_probs=323.9

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~   99 (605)
                      +.+|++|+++.+++||++.|+.+|||++..+++++++|+       .+. .||||||||+|||+|+|+|++||+||..|.
T Consensus         4 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~   82 (459)
T PRK00012          4 KEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILE   82 (459)
T ss_pred             CcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhc
Confidence            558999999999999999999999999998877766554       233 799999999999999999999999999997


Q ss_pred             hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCC
Q 007401          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT  179 (605)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~  179 (605)
                      +  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+||||||
T Consensus        83 ~--~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDt  160 (459)
T PRK00012         83 N--YVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDT  160 (459)
T ss_pred             c--CCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCC
Confidence            5  67889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------
Q 007401          180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------------  242 (605)
Q Consensus       180 gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------------  242 (605)
                      |||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.                 
T Consensus       161 gGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~  240 (459)
T PRK00012        161 GGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKD  240 (459)
T ss_pred             CCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999876432210                 


Q ss_pred             ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401          243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSV  321 (605)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  321 (605)
                      ..+.++.+..+.+  ....++++.++++++++.|+..+.        .|+ ...|.+.+....+        ......+.
T Consensus       241 ~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~~--------~~~~~~~~  302 (459)
T PRK00012        241 IKGLKIGVPKEYF--GEGLDPEVKEAVEAAIKKLEDLGA--------EIVEVSLPHTKYALPAY--------YIIAPAEA  302 (459)
T ss_pred             ccccEEEEEcccc--cccCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHHHH--------HHHHHHHH
Confidence            1223555554432  122357889999999998863332        221 1223322111000        00000010


Q ss_pred             HHHhhhh---------hhHhhHHHHHHh-cCCCCChhHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401          322 MLSLQRY---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDK  386 (605)
Q Consensus       322 ~~~l~~~---------e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~D  386 (605)
                      ...+..+         .....+.+++.. ....+++.++.++..+..++     ...|.++.+.|.++++.+.++|+++|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  382 (459)
T PRK00012        303 SSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVD  382 (459)
T ss_pred             HHHHhhcccccccccccccccHHHHHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            0001010         000112222222 22357788888887655432     34588899999999999999999999


Q ss_pred             EEEEeCCCCCCccCCccccc-chhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHH
Q 007401          387 ILVIPTVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLY  463 (605)
Q Consensus       387 vll~Pt~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~  463 (605)
                      +||+||+|.+||+++..... ...+. . +.||.++|++|+|++|||+|.. +|+|+|+|+++++++|..|++++..++
T Consensus       383 ~ll~Pt~~~~a~~~~~~~~~~~~~~~-~-~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E  459 (459)
T PRK00012        383 VILGPTAPTTAFKIGEKTDDPLAMYL-S-DIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE  459 (459)
T ss_pred             EEEeCCCCCCCcccccccCchHhhhc-c-ccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence            99999999999999753211 11121 1 2379999999999999999987 799999999999999999999998764

>PRK06529 amidase; Provisional

Probab=100.00  E-value=8.5e-85  Score=696.37  Aligned_cols=410  Identities=18%  Similarity=0.239  Sum_probs=323.6

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCC-CCCCCCceEEEeec-cCCCCcccCCCchhhhhcCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAA-RQPLAGLKFAIKDV-FDVKGYVTGFGSPDWKRDHHE  104 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~-~gpL~Gvp~~vKD~-~~~~G~~tt~Gs~~~~~~~~~  104 (605)
                      +.+|++|+++.+++||++.|+.+|||++..+++++++|+.... .+|||||||+|||| |+|+|++||+||..+++  .+
T Consensus        16 g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~Gs~~~~~--~~   93 (482)
T PRK06529         16 GQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKN--YQ   93 (482)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCcchHHhcC--CC
Confidence            4499999999999999999999999999988877666553322 35999999999998 79999999999999875  67


Q ss_pred             CCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccc
Q 007401          105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR  184 (605)
Q Consensus       105 ~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR  184 (605)
                      +.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|++||||||||||
T Consensus        94 ~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~aiGtDtgGSIR  173 (482)
T PRK06529         94 ATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIR  173 (482)
T ss_pred             CCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCCCee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccccCCCCCccCCCCccCCCCCccc-cccccCHHHHHHHHHHHccCCCCCc---------------ccCcee
Q 007401          185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV-GLLARNASILHRVGHVLLQLNAVEP---------------RRARRL  248 (605)
Q Consensus       185 ~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~-G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~~~l  248 (605)
                      +|||||||||||||+||||..++.+.+.+.|++ |||+|+++|++.+++++.+.+..++               ..+.|+
T Consensus       174 iPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lrI  253 (482)
T PRK06529        174 IPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKI  253 (482)
T ss_pred             cChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccchhccccCCCCEE
Confidence            999999999999999999987765556677776 7999999999999998875432110               122355


Q ss_pred             eeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccccc--Cc-chhhhhhcCCCCCCchhHHHHHHHHHHHh
Q 007401          249 IFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN--VP-SLKGLRAQSTSPENGTATLKALSSVMLSL  325 (605)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~--~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  325 (605)
                      .+..+.+. ....++++.++++++++.|+..+        +.|++.  .| .+...                 ...+..+
T Consensus       254 g~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G--------~~v~ev~~~p~~~~~~-----------------~~~~~~~  307 (482)
T PRK06529        254 AFYQRSPD-GSPVSLDAAKALKQAVTFLREQG--------HEVVELEEFPLDMTEV-----------------MRSYYIM  307 (482)
T ss_pred             EEECCCCC-CCCCCHHHHHHHHHHHHHHHhCC--------CEEEEcCCCCCCHHHH-----------------HHHHHHH
Confidence            55443221 12246789999999999986333        222221  12 11111                 1111112


Q ss_pred             hhhhhHhhHHHHHHhc-----CCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccC
Q 007401          326 QRYEFKTIYEEWVKSA-----KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKL  400 (605)
Q Consensus       326 ~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~  400 (605)
                      ...+....+..+.+..     ...+.+.++.+++.+..++..+|.++++.|..+++.|.++|+++|+||+||+|++||++
T Consensus       308 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~  387 (482)
T PRK06529        308 NSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKH  387 (482)
T ss_pred             HHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC
Confidence            2222222232222111     12356666667778888899999999999999999999999999999999999999998


Q ss_pred             Ccccccc----------------------hhh--hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhH
Q 007401          401 NTKKTYS----------------------AEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL  455 (605)
Q Consensus       401 ~~~~~~~----------------------~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~l  455 (605)
                      ++.....                      ..+  ...++.||.++|++|+|++|||+|.. +|||+|+|+++++++|..+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l  467 (482)
T PRK06529        388 GQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLL  467 (482)
T ss_pred             CccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHH
Confidence            7521110                      011  01334589999999999999999987 8999999999999999999


Q ss_pred             HhHHHHHHh
Q 007401          456 LDTVLDLYD  464 (605)
Q Consensus       456 l~~a~~l~~  464 (605)
                      |+++..+++
T Consensus       468 L~~a~~le~  476 (482)
T PRK06529        468 LGIAEQFEA  476 (482)
T ss_pred             HHHHHHHHh
Confidence            999999875

>PRK06061 amidase; Provisional

Probab=100.00  E-value=7.2e-85  Score=695.43  Aligned_cols=408  Identities=21%  Similarity=0.245  Sum_probs=324.8

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC------CCCCCCCCCceEEEeeccCCCCcccCCCchhhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR  100 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~------~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~  100 (605)
                      +.+|++|+++.+++||++.|+.+|||++..+++++++|+.      ....+|||||||+|||+|+|+|++||+||+.+  
T Consensus        30 g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~vKD~~~v~G~~tt~Gs~~~--  107 (483)
T PRK06061         30 GAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKDDVDVAGVPTAFGTAGE--  107 (483)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEcccccCCceecCCCccc--
Confidence            4499999999999999999999999999988877665541      11235999999999999999999999999843  


Q ss_pred             cCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCC
Q 007401          101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI  180 (605)
Q Consensus       101 ~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~g  180 (605)
                       ..++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|||||||
T Consensus       108 -~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaAVAaG~~~~alGtDtg  186 (483)
T PRK06061        108 -VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGA  186 (483)
T ss_pred             -CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCceEeecCCC
Confidence             2355799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------------ccC
Q 007401          181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------RRA  245 (605)
Q Consensus       181 GSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~  245 (605)
                      |||||||+||||||||||+||||+.|+.|.+.++|++|||+||++|++.+++++.+.+..+.               ..+
T Consensus       187 GSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~  266 (483)
T PRK06061        187 GSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPGDRHRPPPVTVSDAVGRAPGP  266 (483)
T ss_pred             CcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCCCCCcccCCccchhhhccCCCC
Confidence            99999999999999999999999999999888999999999999999999999876432111               112


Q ss_pred             ceeeeccchhh--hcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHH
Q 007401          246 RRLIFADDIFQ--LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVML  323 (605)
Q Consensus       246 ~~l~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (605)
                      .++.+..+...  .....++++.+.++++++.|+..+        +.|++..|.+....           ....+..   
T Consensus       267 lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~-----------~~~~~~~---  324 (483)
T PRK06061        267 LRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLG--------HTVVPADPDYGLRL-----------GLNFLPR---  324 (483)
T ss_pred             cEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCchhhHH-----------HHHHHHH---
Confidence            34444432210  112246789999999999986332        22221112111000           0000000   


Q ss_pred             HhhhhhhHhhHHHHHHh--cCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCC
Q 007401          324 SLQRYEFKTIYEEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN  401 (605)
Q Consensus       324 ~l~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  401 (605)
                            ....+..+.+.  ....+++.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++
T Consensus       325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~  398 (483)
T PRK06061        325 ------STAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVG  398 (483)
T ss_pred             ------HHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcc
Confidence                  00111122222  2345789999999989889999999999999999999999999999999999999999987


Q ss_pred             cccccch----hhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          402 TKKTYSA----EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       402 ~~~~~~~----~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      +......    .....+..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..+++++..+++.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~~  467 (483)
T PRK06061        399 AFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEAV  467 (483)
T ss_pred             cccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHhh
Confidence            5321100    0011233489999999999999999987 89999999999999999999999999874

>PRK07869 amidase; Provisional

Probab=100.00  E-value=1e-84  Score=694.00  Aligned_cols=421  Identities=18%  Similarity=0.243  Sum_probs=320.4

Q ss_pred             hhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC-CCCCCCCCCceEEEeeccCCCCc
Q 007401           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-PAARQPLAGLKFAIKDVFDVKGY   89 (605)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~-~~~~gpL~Gvp~~vKD~~~~~G~   89 (605)
                      ++...|+.+|+.+     +|++|+++.+++||++.||.+|||++..+++++++|+. ....||||||||+|||||+++|+
T Consensus        11 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G~   90 (468)
T PRK07869         11 ALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAGL   90 (468)
T ss_pred             hhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCCc
Confidence            4444477777744     89999999999999999999999999988877666543 23569999999999999999999


Q ss_pred             ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhc
Q 007401           90 VTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQ  169 (605)
Q Consensus        90 ~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag  169 (605)
                      +||+||+.|.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|
T Consensus        91 ~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAaG  168 (468)
T PRK07869         91 PTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAG  168 (468)
T ss_pred             ccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHcC
Confidence            99999999975  6778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccC-CCCCccccccccCHHHHHHHHHHHccCCCCC---c---
Q 007401          170 LVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPN-SQSLDTVGLLARNASILHRVGHVLLQLNAVE---P---  242 (605)
Q Consensus       170 ~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~---  242 (605)
                      ++|+|+|||||||||||||||||||||||+||||+.|+.|. ..++|++|||+||++|++.+++++.+.+..+   .   
T Consensus       169 ~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~~  248 (468)
T PRK07869        169 VVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIGD  248 (468)
T ss_pred             CCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchhh
Confidence            99999999999999999999999999999999999998764 3478999999999999999999987543111   0   


Q ss_pred             -----ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHH
Q 007401          243 -----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLK  316 (605)
Q Consensus       243 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~  316 (605)
                           ..+.++.+..+.+. ....++++.++++++++.|+..+        +.|++ ..|...++..          .+.
T Consensus       249 ~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~~~~~~----------~~~  309 (468)
T PRK07869        249 VTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELG--------HRVEPVDLPVPASFVD----------DFL  309 (468)
T ss_pred             hcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHHHHH----------HHH
Confidence                 12235555543321 02346789999999999986333        22221 2222111100          000


Q ss_pred             HHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhH-----HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 007401          317 ALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNV-----FERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP  391 (605)
Q Consensus       317 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~P  391 (605)
                      .    +..+...+.......   .....+.+..     ......+.. +..+|.++.+.|+.+++.+.++|+++|+||+|
T Consensus       310 ~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~P  381 (468)
T PRK07869        310 L----YWGFLAFALVRGGRR---TFGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTP  381 (468)
T ss_pred             H----HHHHHHHHHHhhhhh---hcccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecC
Confidence            0    000000000000000   0111122222     222222222 44567788888999999999999999999999


Q ss_pred             CCCCCCccCCcccccc--hhh---hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          392 TVSDPPLKLNTKKTYS--AEF---HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       392 t~~~~ap~~~~~~~~~--~~~---~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      |+|.+||+++......  ...   ...+..||.++|++|+|++|||+|.. +|+|+|+|+++++++|..+++++..+++.
T Consensus       382 t~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  461 (468)
T PRK07869        382 TLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA  461 (468)
T ss_pred             CCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence            9999999987532110  111   11334579999999999999999987 89999999999999999999999998764

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=4.7e-84  Score=698.76  Aligned_cols=410  Identities=26%  Similarity=0.328  Sum_probs=329.2

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecc-cCCCCCCCC----CCCCCCCCCceEEEeeccCCCCcccCCCchhhhhc
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFE-LIPFPQPPP----PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRD  101 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~a~~~a~~----~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~  101 (605)
                      +.+|++|+++.+++||++ ++.+|+|++... ++++++|+.    ....||||||||+|||||+|+|++||+||+.|.  
T Consensus        19 g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pTTaGs~~~~--   95 (600)
T PRK08186         19 GTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFA--   95 (600)
T ss_pred             CCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcccCcCCHhHc--
Confidence            448999999999999998 679999999875 344444331    124689999999999999999999999999985  


Q ss_pred             CCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCC
Q 007401          102 HHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIG  181 (605)
Q Consensus       102 ~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gG  181 (605)
                       +.+.+||++|+||++||||++||||||||+++.+|.|+.||+|+||||++|+|||||||||||||+|+++++|||||||
T Consensus        96 -~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~~~alGTDtgG  174 (600)
T PRK08186         96 -YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAG  174 (600)
T ss_pred             -CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCcceEeeecCCC
Confidence             3578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------ccCcee
Q 007401          182 CVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------RRARRL  248 (605)
Q Consensus       182 SiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------~~~~~l  248 (605)
                      |||+||+||||||||||+||||+.|++|.++++|++|||+||++|+..+++++.+.+..+.             ..+.++
T Consensus       175 SiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~~~~~~~~lrI  254 (600)
T PRK08186        175 SGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADAPAALPAGPRV  254 (600)
T ss_pred             cchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCcccccccCCCCEE
Confidence            9999999999999999999999999999999999999999999999999999876532221             012345


Q ss_pred             eeccch-hhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhh
Q 007401          249 IFADDI-FQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR  327 (605)
Q Consensus       249 ~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  327 (605)
                      .++.+. ....  .++++.++++++++.|...+.       +.++...|.+.+.                ....+.....
T Consensus       255 gv~~~~~~~~~--~~~~v~~a~~~a~~~L~~~G~-------~v~ei~~~~~~~~----------------~~~~~~~~~~  309 (600)
T PRK08186        255 GVPRAAQLEFF--GDAEAEAAFAAALARLEALGA-------ELVEIDFSPFLEA----------------ARLLYEGPWV  309 (600)
T ss_pred             EEEcchhcccc--CCHHHHHHHHHHHHHHHHcCC-------eEEEecchhHHHH----------------HHHHHHHHHH
Confidence            554321 1111  256788999999998863332       1112222322110                0001111122


Q ss_pred             hhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccc
Q 007401          328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS  407 (605)
Q Consensus       328 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~  407 (605)
                      .|....+..+++.....++|.++.++..+..++..+|.+++..|+.+++.++++|+++|+||+||+|.+++ +.+.....
T Consensus       310 ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~  388 (600)
T PRK08186        310 AERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADP  388 (600)
T ss_pred             HHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCc
Confidence            23444556666666667899999999999899999999999999999999999999999999999999875 33221111


Q ss_pred             hhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       408 ~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      ......+..||.++|++|+|+++||+|+. +|+|+|+|+++++++|..+++++..+++..
T Consensus       389 ~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~  448 (600)
T PRK08186        389 IGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL  448 (600)
T ss_pred             hhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            11222333589999999999999999986 899999999999999999999999998753

>PRK08137 amidase; Provisional

Probab=100.00  E-value=1.3e-83  Score=689.73  Aligned_cols=407  Identities=23%  Similarity=0.259  Sum_probs=320.3

Q ss_pred             HHHHhhhh-----HHHHHHHHHhhcCcccC---CCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccC
Q 007401           21 IGVSVVGF-----VVLAETLRRRRNPKLNG---RVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFD   85 (605)
Q Consensus        21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~   85 (605)
                      |+.+|+.+     +|++|+++.+++||++.   ||.+|||++..++ ++++|+       .+..+||||||||+|||+|+
T Consensus         7 ~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   85 (497)
T PRK08137          7 RAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLKDNID   85 (497)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeeeccee
Confidence            56666644     99999999999999976   7899999998764 544443       34567999999999999999


Q ss_pred             CC-CcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCc
Q 007401           86 VK-GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGSS  159 (605)
Q Consensus        86 ~~-G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~~~~~GGSS  159 (605)
                      |+ |++||+||..+.+  .++.+||++|+|||+|||||+||||||||+++     .+|+|++||+|+||||++|+|||||
T Consensus        86 v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGSS  163 (497)
T PRK08137         86 AADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSS  163 (497)
T ss_pred             ecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence            99 9999999999875  67889999999999999999999999999954     4468999999999999999999999


Q ss_pred             hHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCC
Q 007401          160 SGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNA  239 (605)
Q Consensus       160 gGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~  239 (605)
                      ||||||||+|++|+|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+.
T Consensus       164 gGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~g~d~  243 (497)
T PRK08137        164 SGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIAGGDP  243 (497)
T ss_pred             cHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876432


Q ss_pred             CCc--------------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcch
Q 007401          240 VEP--------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSL  298 (605)
Q Consensus       240 ~~~--------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~  298 (605)
                      .++                    .++.+|.+..+.+    ..++++.++++++++.|+..+        +.++ ...|.+
T Consensus       244 ~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~  311 (497)
T PRK08137        244 ADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAG--------AVVIDVVDLDD  311 (497)
T ss_pred             CCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCC--------CEEEeccCCch
Confidence            110                    1223455544432    145788999999999886332        2221 122322


Q ss_pred             hhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHH----------------H-------hcCCCCChhHHHHHHH
Q 007401          299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWV----------------K-------SAKPRLGYNVFERVLE  355 (605)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~----------------~-------~~~~~~~~~~~~~~~~  355 (605)
                      ..+..                 .+..+...|+...+..++                .       .....+++.++.+++.
T Consensus       312 ~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (497)
T PRK08137        312 GDWGE-----------------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQA  374 (497)
T ss_pred             hhHHH-----------------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHc
Confidence            11110                 001111111111111111                1       1124577888888888


Q ss_pred             HhcCCHHHHHHHHHHHHHH--HHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeee
Q 007401          356 AINTTQDNIKILYKVRNEM--RAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAI  431 (605)
Q Consensus       356 ~~~~s~~~~~~a~~~r~~~--~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Paisv  431 (605)
                      +..++..+|.++++.+.++  ++.+.++|+  ++|+||+||++ +||+++....  ..+.   ..+|.++|++|+|++||
T Consensus       375 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~Paisv  448 (497)
T PRK08137        375 APGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTV  448 (497)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEE
Confidence            8888999999988755554  478999997  68999999999 8888864211  1111   13678999999999999


Q ss_pred             ecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          432 PIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       432 P~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      |+|..+|||+|+|+++++++|..||+++..+++.
T Consensus       449 P~g~~~GlPvGvQlig~~~~d~~LL~~a~~lE~~  482 (497)
T PRK08137        449 PMGQVQGLPVGLSFIGAAWSEARLLELGYAYEQA  482 (497)
T ss_pred             eCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999874

>PRK07139 amidase; Provisional

Probab=100.00  E-value=2.2e-80  Score=652.35  Aligned_cols=397  Identities=25%  Similarity=0.338  Sum_probs=302.4

Q ss_pred             HHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHH
Q 007401           36 RRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLL  115 (605)
Q Consensus        36 ~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL  115 (605)
                      +.+++++.  +..+|++.+.+.+..       ...||||||||+|||+|+++|++||+||+.+.+  .++.+||++|+||
T Consensus         9 ~~~~~~~~--~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rL   77 (439)
T PRK07139          9 QKALEELK--NDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKL   77 (439)
T ss_pred             HHHHHHhh--ccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHH
Confidence            33444333  467888888755442       247999999999999999999999999999875  5678999999999


Q ss_pred             HhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccc
Q 007401          116 LKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGY  195 (605)
Q Consensus       116 ~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~Gl  195 (605)
                      ++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+| +|+|+|||||||||+||||||||||
T Consensus        78 r~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGl  156 (439)
T PRK07139         78 INAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGF  156 (439)
T ss_pred             HHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEE
Confidence            999999999999999999999999999999999999999999999999999997 7999999999999999999999999


Q ss_pred             cCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------ccCceeeeccchhhhcCCchh
Q 007401          196 RPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------RRARRLIFADDIFQLSKVPKL  263 (605)
Q Consensus       196 kPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~  263 (605)
                      |||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..++            ..+.++.+... +   ...++
T Consensus       157 KPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~  232 (439)
T PRK07139        157 KPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEE  232 (439)
T ss_pred             eCCCCCcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCH
Confidence            99999999999999999999999999999999999999987543221            12345554322 1   12357


Q ss_pred             hHHHHHHHHHHHHhCCCCCccccccccccc-cCcc--hhhhhhcCCCCCCchhHHHHHHHHHHHhhhh---hh-----Hh
Q 007401          264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPS--LKGLRAQSTSPENGTATLKALSSVMLSLQRY---EF-----KT  332 (605)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---e~-----~~  332 (605)
                      ++.++++++++.|+..+.        .+++ ..|.  +......+        ......+....+..+   .+     ..
T Consensus       233 ~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~~~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~  296 (439)
T PRK07139        233 YVAKKYKKLINILKSENI--------EVEKIKIDEKLLKAIKPVY--------KIISYSEASSNLANLNGIAFGNREKGS  296 (439)
T ss_pred             HHHHHHHHHHHHHHHCCC--------EEEEeCCChhHHHHHHHHH--------HHHHHHHHHHHHHhhcccccccccccc
Confidence            788999999988864332        2211 1221  11000000        000000111101000   00     00


Q ss_pred             hHHHHHH-hcCCCCChhHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCccccc
Q 007401          333 IYEEWVK-SAKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY  406 (605)
Q Consensus       333 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~  406 (605)
                      .+..++. .....+++.++.++..+..++.     .+|.++++.|+++++.+.++|+++|+||+||+|.+||+++.....
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~  376 (439)
T PRK07139        297 SWEEIMINTRSEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENK  376 (439)
T ss_pred             cHHHHHHhcchhccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccc
Confidence            1222322 2334588889988888776554     358899999999999999999999999999999999998753111


Q ss_pred             chhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHHH
Q 007401          407 SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (605)
Q Consensus       407 ~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~  467 (605)
                      ...+. .+  +|.++|++|+|++|||+|..+|||+|+|+++++++|..||+++..+++.++
T Consensus       377 ~~~~~-~~--~t~~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~  434 (439)
T PRK07139        377 SDNYM-DY--ILTISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK  434 (439)
T ss_pred             hhhhh-hh--cccCcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            11121 11  377899999999999999658999999999999999999999999987654

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=1.4e-80  Score=664.42  Aligned_cols=387  Identities=28%  Similarity=0.345  Sum_probs=306.6

Q ss_pred             Cceeeecc-cCCCCCCC------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeE
Q 007401           50 GAFLERFE-LIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC  122 (605)
Q Consensus        50 ~a~~~~~~-~~a~~~a~------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~  122 (605)
                      |+|++... ++++++|+      .....+|||||||+|||||+|+|++||+||+.|.   +++.+||++|+|||+||||+
T Consensus         2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIi   78 (561)
T TIGR02713         2 EAWISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIV   78 (561)
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEE
Confidence            57777643 34444332      1123589999999999999999999999999985   46789999999999999999


Q ss_pred             eeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCc
Q 007401          123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV  202 (605)
Q Consensus       123 ~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v  202 (605)
                      +||||||||+++.+|.|++||+|+||||++|+|||||||||||||+|++++++|||||||||||||||||||||||+|||
T Consensus        79 iGKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~v  158 (561)
T TIGR02713        79 VGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLV  158 (561)
T ss_pred             EEEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------c--cCceeeeccchhhhcCCchhhHHHHH
Q 007401          203 SMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------R--RARRLIFADDIFQLSKVPKLKTIHVI  269 (605)
Q Consensus       203 ~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------~--~~~~l~~~~~~~~~~~~~~~~~~~~~  269 (605)
                      |+.|++|.++++||+|||+||++|++.+++++.+.+..++           .  .+.++.++.+... ....++++.+++
T Consensus       159 s~~Gv~p~~~slD~vG~~Arsv~D~~~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~  237 (561)
T TIGR02713       159 STTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQL-EFFGDSQAEAAF  237 (561)
T ss_pred             cCCCccccccCCCeeechhCCHHHHHHHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhc-CCCCCHHHHHHH
Confidence            9999999999999999999999999999999876432221           0  1234555431110 011245788999


Q ss_pred             HHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChh
Q 007401          270 SKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYN  348 (605)
Q Consensus       270 ~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~  348 (605)
                      +++++.|+..+        +.+ +...|.+.+.             ...+   +......+....+..+++.....++|.
T Consensus       238 ~~a~~~L~~~G--------~~v~~v~~~~~~~~-------------~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~p~  293 (561)
T TIGR02713       238 AAAVERLEALG--------VEVVEIDFAPFLET-------------AALL---YEGPWVAERYAAVGEFVEAQPDALDPV  293 (561)
T ss_pred             HHHHHHHHHCC--------CEEEEecchhHHHH-------------HHHH---HHHHHHHHHHHHHHHHHhhChhhcCHH
Confidence            99999986333        222 1222322110             0000   111111233344555666666778999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCce
Q 007401          349 VFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQ  428 (605)
Q Consensus       349 ~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pa  428 (605)
                      ++.+++.+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+++..+ ..............||.++|++|+|+
T Consensus       294 ~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPA  372 (561)
T TIGR02713       294 VRGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCA  372 (561)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCce
Confidence            99999999999999999999999999999999999999999999999875432 21111122223345899999999999


Q ss_pred             eeeecccC-CCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          429 VAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       429 isvP~G~~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      ++||+|+. +|+|+|+|+++++++|..+++++..++..
T Consensus       373 isvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~  410 (561)
T TIGR02713       373 VAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAA  410 (561)
T ss_pred             EEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhc
Confidence            99999987 89999999999999999999999999875

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=6.6e-82  Score=676.85  Aligned_cols=397  Identities=29%  Similarity=0.370  Sum_probs=299.4

Q ss_pred             HHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCC
Q 007401           33 ETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA  105 (605)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~  105 (605)
                      |+++.+++||++.||.+|||++..++.++++|+       .+...||||||||+|||+|+++|++||+||..|.+  .++
T Consensus         1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~   78 (441)
T PF01425_consen    1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPP   78 (441)
T ss_dssp             HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBB
T ss_pred             CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCc
Confidence            789999999999999999999998888877664       46788999999999999999999999999999985  678


Q ss_pred             CCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccch
Q 007401          106 ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRV  185 (605)
Q Consensus       106 ~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~  185 (605)
                      .+||++|+||++||||++||||||||+++.++.|+.||+|+||||++++|||||||||||||+|++|+|||||||||||+
T Consensus        79 ~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~  158 (441)
T PF01425_consen   79 TEDAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRI  158 (441)
T ss_dssp             SSS-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHH
T ss_pred             ccccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-------------------cccCc
Q 007401          186 PASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-------------------PRRAR  246 (605)
Q Consensus       186 PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-------------------~~~~~  246 (605)
                      ||+||||||||||+|+||+.|++|+++++|++|||+||++|++.+++++.+.+..+                   ...+.
T Consensus       159 PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~l  238 (441)
T PF01425_consen  159 PAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGL  238 (441)
T ss_dssp             HHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-
T ss_pred             chhccccceeccccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCc
Confidence            99999999999999999999999999999999999999999999999998654221                   11234


Q ss_pred             eeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhh
Q 007401          247 RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQ  326 (605)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  326 (605)
                      ++.+..+.+. ....++++.++++++++.|+..+.       ..++...|.+.+...                 .+..+.
T Consensus       239 rIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~-------~vv~~~~p~~~~~~~-----------------~~~~~~  293 (441)
T PF01425_consen  239 RIGVPRDDGQ-WVPVDPEVRRAFEEAAEALEAAGA-------EVVEVDLPDLDEAMD-----------------AYYRIF  293 (441)
T ss_dssp             EEEEEGGGG--SSTSSHHHHHHHHHHHHHHHHTT--------EEEEE--TTGGHHHH-----------------HHHHHH
T ss_pred             cccccccccc-cccccHHHHHHHHHHHHhhccccc-------ccccccCchHHHHHH-----------------HHhhhH
Confidence            5666555431 123467899999999999863332       112223444332211                 001111


Q ss_pred             hhhhHhh------HHH-HHHhcCCCCChhHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 007401          327 RYEFKTI------YEE-WVKSAKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVS  394 (605)
Q Consensus       327 ~~e~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~  394 (605)
                      ..+....      +.. +.......+.+.+..++..+.....     ..|.++++.|..+++.+.++|+++|+||+||++
T Consensus       294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~  373 (441)
T PF01425_consen  294 VSEGAANLARYKDFARLLAKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTP  373 (441)
T ss_dssp             HHHHHHHHTTTCSHHHHHHHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSS
T ss_pred             HHHHHHHHhhhhHHHHhhhcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCC
Confidence            1111111      111 1112233456667666666543322     338999999999999999999999999999999


Q ss_pred             CCCccCCccccc---ch--hhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHH
Q 007401          395 DPPLKLNTKKTY---SA--EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL  456 (605)
Q Consensus       395 ~~ap~~~~~~~~---~~--~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll  456 (605)
                      .+||+++.....   ..  .....+..+|.++|++|+|+++||+|.. +|+|+|+|+++++++|..||
T Consensus       374 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL  441 (441)
T PF01425_consen  374 VPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL  441 (441)
T ss_dssp             SS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred             cCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence            999999875421   11  1122344578999999999999999997 89999999999999999886

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK06828 amidase; Provisional

Probab=100.00  E-value=1.5e-79  Score=650.53  Aligned_cols=396  Identities=20%  Similarity=0.220  Sum_probs=303.7

Q ss_pred             hhHHHHHHHHHhhcCcccCC---CCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCC-cccCCCc
Q 007401           27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG-YVTGFGS   95 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G-~~tt~Gs   95 (605)
                      +.+|++|+++.+++||.+.|   +.+|||++..++ ++++|+       .+...||||||||+|||||+|+| ++||+||
T Consensus        25 g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~gg~~tt~Gs  103 (491)
T PRK06828         25 GKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIETNDSMHTSAGT  103 (491)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEEecCCCcCCcCc
Confidence            44999999999999999999   589999998766 444443       34567999999999999999996 9999999


Q ss_pred             hhhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCC---CCCCCCCchHHHHHHH
Q 007401           96 PDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP---SHIPGGSSSGSAVAVA  167 (605)
Q Consensus        96 ~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~---~~~~GGSSgGsaaaVA  167 (605)
                      ..+.+  .++.+||++|+|||+|||||+||||||||+++     .+|.|++||+|+||||+   .|+|||||||||+|||
T Consensus       104 ~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pGGSSgGsAaaVA  181 (491)
T PRK06828        104 IALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVA  181 (491)
T ss_pred             HHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCCcCchHHHHHHH
Confidence            99875  67889999999999999999999999999974     58899999999999999   6899999999999999


Q ss_pred             hcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC------
Q 007401          168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE------  241 (605)
Q Consensus       168 ag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------  241 (605)
                      +|++|++||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+      
T Consensus       182 ag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~  261 (491)
T PRK06828        182 ANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTGVDEKDVVTHKS  261 (491)
T ss_pred             cCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhCCCccCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987643211      


Q ss_pred             ---------------cccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc--cCcchhhhhhc
Q 007401          242 ---------------PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQ  304 (605)
Q Consensus       242 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~--~~p~~~~~~~~  304 (605)
                                     ...+.+|.+..+.+......++++.++++++++.|+..+.        .+.+  .+|.+..... 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~p~~~~~~~-  332 (491)
T PRK06828        262 EGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGA--------TVVEDIDIPSFHREWS-  332 (491)
T ss_pred             CcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCC--------EEEecccCccchhHHH-
Confidence                           0123455553221100012457889999999999863332        1111  1222111000 


Q ss_pred             CCCCCCchhHHHHHHHHHHHhhhh----hhH---hhHHHHH------HhcCCCCChhHHH-HHHHHhcCCHHHHHHHHHH
Q 007401          305 STSPENGTATLKALSSVMLSLQRY----EFK---TIYEEWV------KSAKPRLGYNVFE-RVLEAINTTQDNIKILYKV  370 (605)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~l~~~----e~~---~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~s~~~~~~a~~~  370 (605)
                               ......+....+..+    ...   ....+.+      ......+++.+.. +++.+..++..+|.++++.
T Consensus       333 ---------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~~a~~~  403 (491)
T PRK06828        333 ---------WGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLE  403 (491)
T ss_pred             ---------HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCChHHHHHHHHH
Confidence                     000000110000000    000   0000111      1222356775444 4667777889999999988


Q ss_pred             HHHH--HHHHHHHhCC--CcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEE
Q 007401          371 RNEM--RAALQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISF  445 (605)
Q Consensus       371 r~~~--~~~~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~  445 (605)
                      |..+  ++.++++|++  +|+||+||++..+                      +.|++|+|++|||+|+. +|||+|+|+
T Consensus       404 r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~~----------------------~~~~~GlPaisvP~G~~~~GlPvGlQl  461 (491)
T PRK06828        404 DIYFSQEQGIDFALEKYNLDAILFPSYIGST----------------------ICAKAGYPSIAIPAGYMEGGRPFGITL  461 (491)
T ss_pred             HHHhhhHHHHHHHHHhcCCCEEEeCCCCccc----------------------chhhcCCCeEEeecCCCCCCcCeEEEE
Confidence            8775  4799999984  8999999987642                      24699999999999987 899999999


Q ss_pred             eeccCCchhHHhHHHHHHhH
Q 007401          446 ITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       446 ~~~~~~d~~ll~~a~~l~~~  465 (605)
                      ++++++|..|++++..+|+.
T Consensus       462 ig~~~~D~~LL~~A~a~E~~  481 (491)
T PRK06828        462 ASTAFSEGTLIKLAYAFEQA  481 (491)
T ss_pred             ECCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998764

>PRK11910 amidase; Provisional

Probab=100.00  E-value=4.1e-78  Score=638.74  Aligned_cols=390  Identities=24%  Similarity=0.277  Sum_probs=295.7

Q ss_pred             HHHHhhh-----hHHHHHHHHHhhcCcccCCC---CcCceeeecccCCCCCCCC-----CCCCCCCCCceEEEeeccCCC
Q 007401           21 IGVSVVG-----FVVLAETLRRRRNPKLNGRV---DFGAFLERFELIPFPQPPP-----PAARQPLAGLKFAIKDVFDVK   87 (605)
Q Consensus        21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~a~~~a~~-----~~~~gpL~Gvp~~vKD~~~~~   87 (605)
                      |+.+|+.     .+|++|+++.+++||.+.|+   .+|||++..++ ++++|+.     ...+||||||||+|||||+++
T Consensus       166 ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VKDni~t~  244 (615)
T PRK11910        166 DVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLKDNIGTK  244 (615)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEEcCcccC
Confidence            4555553     39999999999999999997   89999998765 4443321     123589999999999999999


Q ss_pred             CcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCchHH
Q 007401           88 GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGSSSGS  162 (605)
Q Consensus        88 G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~~~~~GGSSgGs  162 (605)
                      |++||+||..|.+  .++.+||++|+|||+|||||+||||||||+++     .+++|++||+|+||||++|+||||||||
T Consensus       245 G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pGGSSsGS  322 (615)
T PRK11910        245 ELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGS  322 (615)
T ss_pred             CCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchH
Confidence            9999999999975  67889999999999999999999999999976     3578899999999999999999999999


Q ss_pred             HHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-
Q 007401          163 AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-  241 (605)
Q Consensus       163 aaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-  241 (605)
                      |||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+ 
T Consensus       323 AAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~g~~~~~~  402 (615)
T PRK11910        323 ATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPP  402 (615)
T ss_pred             HHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhcCCCCcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998644221 


Q ss_pred             ----cccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc--cCcchhhhhhcCCCCCCchhHH
Q 007401          242 ----PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQSTSPENGTATL  315 (605)
Q Consensus       242 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~--~~p~~~~~~~~~~~~~~~~~~~  315 (605)
                          ...+.|++++.+.      ..+++..++.++++.|+..+.        .+.+  .+|.+...              
T Consensus       403 l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga--------~Vve~~~~p~~~~~--------------  454 (615)
T PRK11910        403 LSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGA--------TIIEGIAVGEFEQK--------------  454 (615)
T ss_pred             cCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCC--------EEEeCCCCccHHHH--------------
Confidence                1223455554321      234667778888887763332        1111  12222111              


Q ss_pred             HHHHHHHHHhhhhhhHhhHHHHHHhc-----------------C---CCCChhHHHHHHHHh-cCCHHH-HHHHHHHHHH
Q 007401          316 KALSSVMLSLQRYEFKTIYEEWVKSA-----------------K---PRLGYNVFERVLEAI-NTTQDN-IKILYKVRNE  373 (605)
Q Consensus       316 ~~~~~~~~~l~~~e~~~~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~-~~s~~~-~~~a~~~r~~  373 (605)
                         ...+..+..+|+...+..|+...                 .   ..+++..  ++..+. .++.++ +..+++.|..
T Consensus       455 ---~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~~--~~~~~~~~~~~~~~~~~~~~~~~~  529 (615)
T PRK11910        455 ---DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQSE--LVKSQQSTITKQQADNLASNLIQS  529 (615)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHHH--HHhhhccCCCHHHHHHHHHHHHHH
Confidence               11112223344444444444211                 1   2233331  122222 134333 2335667777


Q ss_pred             HHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC--CCCCceeEEeecc
Q 007401          374 MRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY--NEHPISISFITYH  449 (605)
Q Consensus       374 ~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~--~glp~g~~~~~~~  449 (605)
                      +++.++++|+  ++|+||+|+....                    .....+++|+|+||||+|+.  +|+|+|+|+++++
T Consensus       530 ~~~~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~  589 (615)
T PRK11910        530 SQNELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITAR  589 (615)
T ss_pred             HHHHHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCC
Confidence            8888999996  7999999973210                    01123599999999999987  4999999999999


Q ss_pred             CCchhHHhHHHHHHhHH
Q 007401          450 GGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       450 ~~d~~ll~~a~~l~~~~  466 (605)
                      ++|..|++++..+|+..
T Consensus       590 ~sE~~LL~~A~a~Eq~t  606 (615)
T PRK11910        590 NSDKILLNMGYAYEQQS  606 (615)
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999987743

>PRK06707 amidase; Provisional

Probab=100.00  E-value=2.6e-76  Score=628.38  Aligned_cols=382  Identities=22%  Similarity=0.279  Sum_probs=290.3

Q ss_pred             hhHHHHHHHHHhhcCcccCC---CCcCceeeecccCCCCCCC------CCCCCCCCCCceEEEeeccCC-CCcccCCCch
Q 007401           27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDV-KGYVTGFGSP   96 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~a~~~a~------~~~~~gpL~Gvp~~vKD~~~~-~G~~tt~Gs~   96 (605)
                      +.+|++|+++.+++||.+.|   +.+|||++..++ ++++|+      .....||||||||+|||||++ +|++||+||.
T Consensus        83 g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~~~~g~~TtaGs~  161 (536)
T PRK06707         83 GKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTY  161 (536)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccccCCCCccCcccH
Confidence            34899999999999999988   579999998765 444432      112358999999999999999 9999999999


Q ss_pred             hhhhcCCCCCCChHHHHHHHhCCCeEeeeccccccccc-----CCCCCCCCCCCCCCCCC-CCCCCCCchHHHHHHHhcC
Q 007401           97 DWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP-SHIPGGSSSGSAVAVAAQL  170 (605)
Q Consensus        97 ~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~-----~~~~n~~~G~~~NP~~~-~~~~GGSSgGsaaaVAag~  170 (605)
                      .+.+  .++.+||++|+|||+|||||+||||||||++.     .+|+|++||+|+||||+ .++|||||||||||||+|+
T Consensus       162 ~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~pGGSSsGSAaAVAag~  239 (536)
T PRK06707        162 VLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADF  239 (536)
T ss_pred             hhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCchHHHHHhCCC
Confidence            9975  56789999999999999999999999999963     57889999999999998 6899999999999999999


Q ss_pred             CceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 007401          171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--------  242 (605)
Q Consensus       171 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--------  242 (605)
                      ++++||||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+.        
T Consensus       240 ~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~g~d~~d~~~~~~~~~  319 (536)
T PRK06707        240 APLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDVMTEKVKDK  319 (536)
T ss_pred             CceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHcCCCCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999886442210        


Q ss_pred             -------------ccCceeeeccchhhhcCCchhhHHHH-HHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCC
Q 007401          243 -------------RRARRLIFADDIFQLSKVPKLKTIHV-ISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTS  307 (605)
Q Consensus       243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~  307 (605)
                                   ..+.|+++..+..     ..+++.++ +.++++.|+..+.       +.++ ..+|...        
T Consensus       320 ~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga-------~iv~~~~l~~~~--------  379 (536)
T PRK06707        320 ERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGA-------ILTDYIQLNNGG--------  379 (536)
T ss_pred             CCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCC-------EEEeccCCchhh--------
Confidence                         1234455443321     23455656 4777777753332       0111 1122100        


Q ss_pred             CCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCC----------CC-ChhHHHHHHHHhcC---------CHHH-HHH
Q 007401          308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP----------RL-GYNVFERVLEAINT---------TQDN-IKI  366 (605)
Q Consensus       308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~---------s~~~-~~~  366 (605)
                             ..     ...+..+|+...+..|+.....          .+ .+.+..++..+..+         +.++ +..
T Consensus       380 -------~~-----~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  447 (536)
T PRK06707        380 -------VD-----NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITKDEFEKV  447 (536)
T ss_pred             -------HH-----HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhcccccHHHHHH
Confidence                   00     0011123333333333221100          02 14445555444322         1223 345


Q ss_pred             HHHHHHHHHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC-CCCCcee
Q 007401          367 LYKVRNEMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISI  443 (605)
Q Consensus       367 a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~  443 (605)
                      +.+.|..+++.++++|+  ++|+||+|..                      ..|.++|++|+|+||||+|+. +|+|+|+
T Consensus       448 ~~~~r~~~~~~~~~~~~~~~~Dall~p~~----------------------~~t~~an~aG~PaitvP~G~~~~GlP~Gl  505 (536)
T PRK06707        448 VQTSQENAKKELDRYLVEKGLDALVMINN----------------------EEVLLSAVAGYPELAVPAGYDNNGEPVGA  505 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCEEEecCC----------------------CcchhhHhcCCCeEEEecccCCCCCCeEE
Confidence            66778888999999998  8999999731                      025678999999999999987 8999999


Q ss_pred             EEeeccCCchhHHhHHHHHHhH
Q 007401          444 SFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       444 ~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      |+++++++|..|++++..+|+.
T Consensus       506 qlig~~~~e~~LL~~A~~~E~~  527 (536)
T PRK06707        506 VFVGKQFGEKELFNIGYAYEQQ  527 (536)
T ss_pred             EEECCCCChHHHHHHHHHHHHh
Confidence            9999999999999999998764

>PRK06565 amidase; Validated

Probab=100.00  E-value=1.2e-73  Score=600.52  Aligned_cols=429  Identities=21%  Similarity=0.214  Sum_probs=297.3

Q ss_pred             hhHHHHHHHHHhhcCcccCC-----CCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGR-----VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFG   94 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~G   94 (605)
                      +.+|++|+++++++||.+.|     +.+|||+...++ ++++|+       .++.+||||||||+|||||+++|++||+|
T Consensus        19 g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD~~~v~G~~TT~G   97 (566)
T PRK06565         19 GRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASG   97 (566)
T ss_pred             CCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEecccccCCCCcccc
Confidence            44899999999999999999     689999986554 444432       34567999999999999999999999999


Q ss_pred             chhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCC----CCCCCchHHHHHHHhcC
Q 007401           95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSH----IPGGSSSGSAVAVAAQL  170 (605)
Q Consensus        95 s~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~----~~GGSSgGsaaaVAag~  170 (605)
                      |..|.+  .++.+||++|+|||+||||++||||||||+++.++ |.+||+|+||||+.+    +|||||||||++||+|+
T Consensus        98 s~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGGSSgGsAaAVAag~  174 (566)
T PRK06565         98 SPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASF  174 (566)
T ss_pred             cHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCCCCccHHHHHhCCC
Confidence            999975  57889999999999999999999999999998876 679999999999999    59999999999999999


Q ss_pred             CceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC---------
Q 007401          171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE---------  241 (605)
Q Consensus       171 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---------  241 (605)
                      +++++|||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+++|++.+++++.+.+..+         
T Consensus       175 ~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~D~~d~~~~~~~~~  254 (566)
T PRK06565        175 SAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADDPDTRGDLWRLQP  254 (566)
T ss_pred             CcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCCCcccccchhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988643211         


Q ss_pred             -----------------------cccCceeeeccchhhhcC------------------CchhhHHHHHHHHHHHHhCCC
Q 007401          242 -----------------------PRRARRLIFADDIFQLSK------------------VPKLKTIHVISKAIESLSGYQ  280 (605)
Q Consensus       242 -----------------------~~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~l~g~~  280 (605)
                                             ...+.|+.++..++....                  ...+++.+.+.++++.|+..+
T Consensus       255 ~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G  334 (566)
T PRK06565        255 WVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVIDLWEAARRALEAAG  334 (566)
T ss_pred             cccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHCC
Confidence                                   012345555544331100                  013578999999999997444


Q ss_pred             C-CccccccccccccCcchhhhhhc-C---CCCCCchhHHHHH---------HHHHHHhhhhh--hHhhHHHHHHh--cC
Q 007401          281 N-PEHMNVGQYIASNVPSLKGLRAQ-S---TSPENGTATLKAL---------SSVMLSLQRYE--FKTIYEEWVKS--AK  342 (605)
Q Consensus       281 ~-~~~~~l~~~v~~~~p~~~~~~~~-~---~~~~~~~~~~~~~---------~~~~~~l~~~e--~~~~~~~~~~~--~~  342 (605)
                      + |+++++        |.+..+... +   ..........+..         +..-..+....  -...+......  ..
T Consensus       335 a~vv~v~~--------p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~~~~~~~~sl~di~~~~~~~  406 (566)
T PRK06565        335 AEVIEVDF--------PLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWELSGWAFDDFLRANGDPKLNRLADVDGPQIFP  406 (566)
T ss_pred             CEEEEeec--------CCccccccccccccccccccccchhhhhccccchhHHHHHHHHHhcCCCCCCCHHHhhhhhccc
Confidence            3 112222        221110000 0   0000000000000         00000000000  00011111110  00


Q ss_pred             --CCCChhHHH----H---HHH---HhcCC---HHHHHHHHHHHHHHHH-HHHHHhC--CCcEEEEeCCCCCCccCCccc
Q 007401          343 --PRLGYNVFE----R---VLE---AINTT---QDNIKILYKVRNEMRA-ALQRLLK--DDKILVIPTVSDPPLKLNTKK  404 (605)
Q Consensus       343 --~~~~~~~~~----~---~~~---~~~~s---~~~~~~a~~~r~~~~~-~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~  404 (605)
                        ...-|....    .   +..   ....+   ...|.+.++.++..++ .++++|.  +.|+||.|+.+..+|..++..
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~  486 (566)
T PRK06565        407 HDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVN  486 (566)
T ss_pred             CcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccccccc
Confidence              000011100    0   000   01111   2234455555555554 6777775  568999999999888776533


Q ss_pred             ccch--hhhh-chhhhcccc-cccCCceeeeecccC--CCCCceeEEeeccCCchhHHhHHHHHHhHHH
Q 007401          405 TYSA--EFHD-RTLVLSSIG-SMSGCCQVAIPIGKY--NEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (605)
Q Consensus       405 ~~~~--~~~~-~~~~~t~~~-nl~G~PaisvP~G~~--~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~  467 (605)
                      ....  .|++ .+.+.+..+ +++|+|+||||+|+.  .|+|+|+.|+++.++|..|+++|..+|+..+
T Consensus       487 ~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~  555 (566)
T PRK06565        487 PASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS  555 (566)
T ss_pred             chhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence            2211  1111 122333344 899999999999987  7999999999999999999999999987543

>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-68  Score=544.94  Aligned_cols=415  Identities=30%  Similarity=0.400  Sum_probs=295.0

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCC-------CCCCCCCCCCCceEEEeeccCCCCccc-CCCchhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQP-------PPPAARQPLAGLKFAIKDVFDVKGYVT-GFGSPDW   98 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a-------~~~~~~gpL~Gvp~~vKD~~~~~G~~t-t~Gs~~~   98 (605)
                      +.+++.++++.+++++...++..+.+....++ ++.++       +.+...+||+||||+|||||+++|++| ||+|..+
T Consensus        30 ~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~-~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l  108 (506)
T KOG1211|consen   30 GLLTSKRIIESYLERINKWKPLNAKITVINEE-ALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWML  108 (506)
T ss_pred             cccchHHHHHHHHHHHhhcccccceeeeccHH-HHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhh
Confidence            44788999999999999888776666655432 22222       245678999999999999999999999 7777776


Q ss_pred             hhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccC
Q 007401           99 KRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD  178 (605)
Q Consensus        99 ~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD  178 (605)
                      .  ++.++.||++|++||++||+|+|||||+||+|+..++|.+||+|+|||++.+.|||||||||+|||+++|++|+|||
T Consensus       109 ~--~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtD  186 (506)
T KOG1211|consen  109 E--HYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTD  186 (506)
T ss_pred             c--cCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhcccc
Confidence            5  46788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-----------------
Q 007401          179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-----------------  241 (605)
Q Consensus       179 ~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------  241 (605)
                      ||||+|+||++|||+|||||+|++|+.|++|++.|+|++|||||++.|...+..++.+.+..+                 
T Consensus       187 TgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~  266 (506)
T KOG1211|consen  187 TGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELI  266 (506)
T ss_pred             CCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhc
Confidence            999999999999999999999999999999999999999999999999999988876643211                 


Q ss_pred             ---cccCceeeeccchhhhcCCchhhHHHHHHHHHHHHh--CCCCCccccccccccccCcchhhhhhcCCCCCCchhHHH
Q 007401          242 ---PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLK  316 (605)
Q Consensus       242 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~  316 (605)
                         ...+.+++++..++...  ....+.....+..++|.  +..+ ..        ..+|........+        ...
T Consensus       267 ~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~--------~~lp~~~~~~~~~--------~~~  327 (506)
T KOG1211|consen  267 GSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV-NE--------VSLPTTINGLCGY--------SLS  327 (506)
T ss_pred             ccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc-ee--------eecchhhhccccc--------ccc
Confidence               11223444554443221  12456666666665554  2221 11        1223322111110        000


Q ss_pred             HHHHHHHHhhhhh---------hHhhHHHHHHhcC-CCCChhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHH--
Q 007401          317 ALSSVMLSLQRYE---------FKTIYEEWVKSAK-PRLGYNVFERVLEAIN-----TTQDNIKILYKVRNEMRAALQ--  379 (605)
Q Consensus       317 ~~~~~~~~l~~~e---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~s~~~~~~a~~~r~~~~~~~~--  379 (605)
                      ...++...+.++.         +....++++...+ ..++.++..++..+..     .....+.++.+.|+.....+.  
T Consensus       328 s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~  407 (506)
T KOG1211|consen  328 SASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRR  407 (506)
T ss_pred             chhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence            0111222222221         1111122222111 1233344444443322     223444677777777777776  


Q ss_pred             -HHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhHHh
Q 007401          380 -RLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLD  457 (605)
Q Consensus       380 -~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~ll~  457 (605)
                       ..+++.|+|++||.|.+.+..-.. ............++.++|++|+|+++||+|.. +|+|+|+|+++..+.|..++.
T Consensus       408 ~~~~~~vD~l~~pt~~~~~~~~~~~-~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~~  486 (506)
T KOG1211|consen  408 KAALEGVDYLVTPTAPPPLYREFEK-ETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLID  486 (506)
T ss_pred             ccccccCCeeeccCCCCcchhhhhh-cccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHHH
Confidence             688899999999943332222111 11111112233579999999999999999987 999999999999999999988


Q ss_pred             HHHHHHh
Q 007401          458 TVLDLYD  464 (605)
Q Consensus       458 ~a~~l~~  464 (605)
                      ++..++.
T Consensus       487 l~~~~~~  493 (506)
T KOG1211|consen  487 LALAIGQ  493 (506)
T ss_pred             HHHhhcc
Confidence            8877655

>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-64  Score=518.53  Aligned_cols=425  Identities=20%  Similarity=0.246  Sum_probs=301.8

Q ss_pred             hHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCC-------CCCCCCCCCceEEEeecc
Q 007401           17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-------PAARQPLAGLKFAIKDVF   84 (605)
Q Consensus        17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~-------~~~~gpL~Gvp~~vKD~~   84 (605)
                      +...|+++|++.     +|++|++++|+.|+...|+.+||+++..++.+..+++.       ....+||+||||+|||+|
T Consensus        52 il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~  131 (560)
T KOG1212|consen   52 ILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESI  131 (560)
T ss_pred             HhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhhe
Confidence            334489999955     99999999999999999999999999988877665542       225689999999999999


Q ss_pred             CCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 007401           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (605)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (605)
                      .++|+.+|.|.....  ..++++|+.+|+.|+++|||++.+||+||.+++..+.|+.||+|.||||.+|||||||||+||
T Consensus       132 ~vkg~d~T~G~~~~~--~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaA  209 (560)
T KOG1212|consen  132 SVKGYDSTAGLLART--NQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAA  209 (560)
T ss_pred             eecCccccchhhhcc--CCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHH
Confidence            999999999987654  378999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCC----CCccccccccCHHHHHHHHHHHccCCCC
Q 007401          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ----SLDTVGLLARNASILHRVGHVLLQLNAV  240 (605)
Q Consensus       165 aVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~~~  240 (605)
                      ++++|.++||||||+||||||||+|||+||+|||.+|+|..|+.|...    .+-.+|||+|+++|+..++..+.+....
T Consensus       210 LigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~  289 (560)
T KOG1212|consen  210 LLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGP  289 (560)
T ss_pred             HHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999999877543    3468899999999999999887764321


Q ss_pred             Cccc-----------------CceeeeccchhhhcCCchhhHHHHHHHHHHHHh--CCCCCccccccccccccCcchhhh
Q 007401          241 EPRR-----------------ARRLIFADDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGL  301 (605)
Q Consensus       241 ~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~l~~~v~~~~p~~~~~  301 (605)
                      ...+                 +.++.+..+.  ....+.+.+.+++....+.++  |+.++         ....|.++..
T Consensus       290 ~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~d--g~~~~~pa~~RAv~~~~~~l~~~g~~~~---------~f~~~~~~~~  358 (560)
T KOG1212|consen  290 KLLDPYPVPVKFMEVFYKSSDKLVIGYYVDD--GFFDPSPAMQRAVQETIDLLEKAGHEVV---------PFDLPDLKHV  358 (560)
T ss_pred             cccCCCCCCchhhhhhhhccCCccceEEecC--CCCCcCHHHHHHHHHHHHHHHhcCccee---------EecCCcchHH
Confidence            1111                 1122221111  112345667777777766554  44331         1122333211


Q ss_pred             hhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhc--CCCCChhHHH-----------HHHHHhcCCHHHHHHHH
Q 007401          302 RAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSA--KPRLGYNVFE-----------RVLEAINTTQDNIKILY  368 (605)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~s~~~~~~a~  368 (605)
                      .+.+.....  ...........       ...+.......  -..+......           .+.........+.++.+
T Consensus       359 ~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  429 (560)
T KOG1212|consen  359 ADMFFRVMP--DDGDYISEMYL-------LDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNY  429 (560)
T ss_pred             HHHHHHHcc--cccchhhHHhh-------cccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHH
Confidence            111100000  00000000000       00000000000  0000000000           11222223334444555


Q ss_pred             HHHHHHHHHHHH--HhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeeccc-----------
Q 007401          369 KVRNEMRAALQR--LLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK-----------  435 (605)
Q Consensus       369 ~~r~~~~~~~~~--~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~-----------  435 (605)
                      ..++.++..+..  ...+.||||+|+.|++||+|+.....     ...+.||.+||++|+|+.+||++.           
T Consensus       430 ~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~-----~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~  504 (560)
T KOG1212|consen  430 EDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLL-----VNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEY  504 (560)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhh-----ccchhHHHHHHhccCCcccccccccchhhhccccc
Confidence            555555544444  45689999999999999999853211     134579999999999988888752           


Q ss_pred             ---------------C-CCCCceeEEeeccCCchhHHhHHHHHHhHHHH
Q 007401          436 ---------------Y-NEHPISISFITYHGGDKFLLDTVLDLYDSLQE  468 (605)
Q Consensus       436 ---------------~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e  468 (605)
                                     . .|||+|+|+++.+++|+.+|++++.+|+.+..
T Consensus       505 ~~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg  553 (560)
T KOG1212|consen  505 PMNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGG  553 (560)
T ss_pred             ccccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCC
Confidence                           2 68999999999999999999999999887643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=8.1e-17  Score=152.86  Aligned_cols=120  Identities=40%  Similarity=0.593  Sum_probs=115.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      ....++.+...|+.+++.++|++|+..|.+||+++|.|+-+|.+++.+|.++|+|+.|+++++.|+++||.+.++|.++|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .+|..+|++++|++.|+++|.++|+|..++..+..+..++
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999988877654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=1.9e-14  Score=128.54  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF  571 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  571 (605)
                      ++.+|..+++.|+|++|+.+|++++..+|.+..+|.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          572 CYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|++.|++++++.|+++..+...+.++..+
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999998888876543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.53  E-value=3.6e-13  Score=118.06  Aligned_cols=108  Identities=9%  Similarity=0.000  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ++..+..+.+|..++..|++++|...|+-++.++|.++..|+++|.|+..+++|.+|+..|.+|+.++|+++.++++.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      |++..|+.+.|.++|+.++....+++..
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~  139 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEVSEH  139 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence            9999999999999999999997544433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1e-12  Score=133.59  Aligned_cols=119  Identities=41%  Similarity=0.595  Sum_probs=113.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      +|+.+...+..|+.+|+.|+|.+|+..|.++|+.+|+++..|.|+|.||..++++..|+++++++++++|++..+|.+.|
T Consensus       354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg  433 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG  433 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            45668888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      .++..+.+|++|++.|+++++++|++..+...+.++...
T Consensus       434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.47  E-value=1.2e-12  Score=135.06  Aligned_cols=115  Identities=34%  Similarity=0.475  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      ..+...|+.++..|+|++|+++|++++.++|+++.+|+++|.+|+.++++++|+.+++++++++|+++.+|+++|.+|+.
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +|+|++|+..|+++++++|++..+...+..+...+
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888886543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=2e-12  Score=114.43  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=109.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|......+.+|..+++.|++++|++.|++++..+|++..++.++|.+++.++++++|+..++++++.+|.++..++++|
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      .++...|++++|++.|+++++++|++.........+.
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEICGENPEYSELKERAE  129 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            9999999999999999999999999988665555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.45  E-value=3.6e-13  Score=138.04  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=106.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|+..++|+++|+.|...+.|++|+.+|.+++.+.|+++.++.|+|.+|+.+|..+-|+..|++|++++|+++.+|+++|
T Consensus       248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla  327 (966)
T KOG4626|consen  248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA  327 (966)
T ss_pred             CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence            46778889999999998999999999999999988998888889998888889998999999999999998888999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .++...|+..+|..+|.++|.+.|+.+.+..+++.++..+|
T Consensus       328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~  368 (966)
T KOG4626|consen  328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG  368 (966)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            98888899999999999999998888888888888877654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.43  E-value=2.7e-12  Score=120.84  Aligned_cols=114  Identities=19%  Similarity=0.236  Sum_probs=104.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY-LELGC--FQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      +|++.+.|..+|..+...|++++|+..|+++++++|+++.++.++|.++ ...|+  +++|.+.++++++++|+++.+++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            4677899999999999999999999999999999999999999999985 67777  59999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ++|.++++.|++++|+.+|+++++++|.+..-...+.
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            9999999999999999999999999987754444433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.40  E-value=2.1e-12  Score=132.49  Aligned_cols=120  Identities=16%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .++.++.++++|+++..+|++++|...|.++++..|+.+.+..|+|.+|.++|++++|+.+|+.+++++|..++++.++|
T Consensus       350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG  429 (966)
T KOG4626|consen  350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG  429 (966)
T ss_pred             CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ..|..+|+...|+++|.+++..+|...+++.+++.+++..
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs  469 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS  469 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence            6666666666666666666666666666666666665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.38  E-value=1.3e-11  Score=124.39  Aligned_cols=107  Identities=24%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ...++.|+++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|+++++++|++..+|+++|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      ++...|++++|++.|+++++++|+++.
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999974

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=1.2e-12  Score=136.37  Aligned_cols=123  Identities=19%  Similarity=0.199  Sum_probs=111.0

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ...+...+.|+..|+++..+++++.|+++|++|++++|.++.+|..+|.=+...++|++|..+|++|+..+|++..+||-
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG  494 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG  494 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence            33566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|.+|.++++++.|+-.|++|++++|.+......++.++.++|
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k  537 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK  537 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence            9999999999999999999999999999888888888877654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.5e-11  Score=122.01  Aligned_cols=117  Identities=38%  Similarity=0.512  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~  551 (605)
                      ..+....+.|+.+|+.|+|..|+..|++++..-...               ..++.|++.||.++++|.+|+..+++++.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            346667788999999999999999999998753211               35789999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       552 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++|+|.+++|++|.++..+|+|+.|...|+++++++|+|..+...+..+.++
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988887665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.31  E-value=5e-11  Score=133.13  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |.....|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.+++.+|++++|+.+|+++++++|++..+++++|.
T Consensus       362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~  441 (615)
T TIGR00990       362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV  441 (615)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            44566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++.++|++++|+..|+++++.+|+++..+..++.++...
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~  480 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ  480 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            777777777777777777777777777777777666544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.29  E-value=6.3e-11  Score=132.32  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=115.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+..+..|..+|..++.+|++++|+..|+++++++|++...|..+|.++..+|++++|+.+|+++++++|+++.+|+.+|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .+++.+|++++|+.+|+++++++|++...+..++.++..+|
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g  447 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999998888876654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.28  E-value=9.5e-11  Score=107.53  Aligned_cols=124  Identities=16%  Similarity=0.058  Sum_probs=110.3

Q ss_pred             CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHH
Q 007401          481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKNVK  558 (605)
Q Consensus       481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~  558 (605)
                      .+...|+....|..++..|.+.|+.+.|-+.|++|++++|++.++++|.|..+...|+|++|...|++|+..  .+.-+.
T Consensus        61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~  140 (250)
T COG3063          61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD  140 (250)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence            345567788899999999999999999999999999999999999999999999999999999999999864  355678


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .|-|+|.|..+.|+.++|.++|+++++++|+++.....+...+...
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~  186 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA  186 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998888887766543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.26  E-value=1.9e-11  Score=117.36  Aligned_cols=110  Identities=43%  Similarity=0.594  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF  571 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  571 (605)
                      +.+.|+.||++|+|++|+.||.+++..+|.|+-.+.|++.+|+++..|..|..+|..|+.+|-.+.++|.+++.+-+.+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          572 CYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      ...+|.+.++.+|+++|++.+.....+.+.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~  209 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARIN  209 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence            999999999999999999988877766653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=1.4e-10  Score=99.95  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLR  562 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  562 (605)
                      .+.++..|..++++|++++|++.|++++..+|++   ..+++.+|.+++..+++++|++.|++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578999999999999999999999999999876   6789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      +|.++.++|++++|...++++++..|++..+....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            99999999999999999999999999998766554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.3e-10  Score=103.79  Aligned_cols=115  Identities=38%  Similarity=0.557  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ...+..+...|+.+|+.|+|++|...|..||.+.|..     +-+|.++|.++++++.+..|+.++.++|+++|.+-+++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            4568889999999999999999999999999999875     45788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .++|.+|.++..|++|++.|.+.+.++|....+...+.++
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            9999999999999999999999999999998887776655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.6e-10  Score=115.52  Aligned_cols=153  Identities=16%  Similarity=0.138  Sum_probs=129.7

Q ss_pred             CCCceeEEeeccCCchhHHhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401          438 EHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK  517 (605)
Q Consensus       438 glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~  517 (605)
                      -.|-...+++.-++          +....++++.......     .-+|....+|..+|-.|+..++-..|++.|++|++
T Consensus       328 yR~ETCCiIaNYYS----------lr~eHEKAv~YFkRAL-----kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  328 YRPETCCIIANYYS----------LRSEHEKAVMYFKRAL-----KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             CCccceeeehhHHH----------HHHhHHHHHHHHHHHH-----hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence            35666777665432          2233334444333322     22567788999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       518 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      ++|.+..+|+.+|+.|..++-..=|+-+|++|+++.|+++..|..+|.||.++++.++|++||.+++.....+..++..+
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L  472 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL  472 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHHHhhC
Q 007401          598 KRLRKLIG  605 (605)
Q Consensus       598 ~~~~~~~g  605 (605)
                      +.++++++
T Consensus       473 akLye~l~  480 (559)
T KOG1155|consen  473 AKLYEELK  480 (559)
T ss_pred             HHHHHHHH
Confidence            99988763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=8.1e-11  Score=122.82  Aligned_cols=123  Identities=20%  Similarity=0.161  Sum_probs=118.8

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      .-.+++-.+|+-+|.+|.++++++.|.-.|++|++++|.+......+|..+.++++.++|+..|++|+.+||.|+-..|.
T Consensus       483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|.+++.+++|++|+..+++.-++-|++..++..+++++.++|
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~  605 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG  605 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999998875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.2e-10  Score=109.18  Aligned_cols=133  Identities=19%  Similarity=0.137  Sum_probs=115.3

Q ss_pred             CchhHHhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          451 GDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA  530 (605)
Q Consensus       451 ~d~~ll~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  530 (605)
                      .+..+-++...++.++++                +|++++.|..+|.+|+.+|++..|...|.+++++.|+|++.+..+|
T Consensus       134 ~~~~~~~l~a~Le~~L~~----------------nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a  197 (287)
T COG4235         134 AEQEMEALIARLETHLQQ----------------NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA  197 (287)
T ss_pred             CcccHHHHHHHHHHHHHh----------------CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344455555555555544                6788999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          531 AAYLELGC---FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       531 ~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      .+++...+   ..++...+++++++||.|..+.+.+|..+++.|+|.+|...+++.++..|.+......+..
T Consensus       198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            99987653   7899999999999999999999999999999999999999999999999987655554444

>PRK12370 invasion protein regulator; Provisional

Probab=99.21  E-value=2.3e-10  Score=125.66  Aligned_cols=121  Identities=12%  Similarity=0.001  Sum_probs=104.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|+....|..+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..++.++
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~  413 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL  413 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence            35667888889999999999999999999999999999999999999999999999999999999999999888777777


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLE-PQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g  605 (605)
                      .+++..|++++|+..++++++.. |+++.++..++.++..+|
T Consensus       414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence            77888899999999999988775 777888888887776554

>PRK15331 chaperone protein SicA; Provisional

Probab=99.19  E-value=4.6e-10  Score=98.99  Aligned_cols=115  Identities=13%  Similarity=0.066  Sum_probs=105.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      ..+..+..+..|-.++.+|+|++|...|+-+...++.+++.+..+|.|+..+++|++|+..|..|..++++++...+..|
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .||+.+|+.++|..+|+.++. .|.+..........
T Consensus       113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~  147 (165)
T PRK15331        113 QCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY  147 (165)
T ss_pred             HHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence            999999999999999999998 57766655544443

>PRK12370 invasion protein regulator; Provisional

Probab=99.19  E-value=2e-10  Score=126.06  Aligned_cols=115  Identities=13%  Similarity=-0.008  Sum_probs=102.9

Q ss_pred             ChHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401          485 SIDASELLKEKGNAAFK---------GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  555 (605)
                      .|+.+..|..+|.++..         .+++++|+..++++++++|+++.++..+|.++...+++++|+..|+++++++|+
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  370 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI  370 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            35557778888877653         345899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      ++.+|+++|.++...|++++|+..++++++++|.+..+......
T Consensus       371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            99999999999999999999999999999999998766544443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=1.7e-10  Score=115.88  Aligned_cols=116  Identities=40%  Similarity=0.617  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..+..+.+.|+.+|+.|+|++||++|.++|.+.|+.+..|.|++.||..+|++++.++++.++++++|++.+++++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            44777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 007401          567 REALFCYNEALQDFKHAMVLEP-QNKAANLAEKRLRK  602 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~  602 (605)
                      +..+|++++|+....-..-++. +|........+++.
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk  229 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK  229 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH
Confidence            9999999999988763332222 33444444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.18  E-value=3.6e-10  Score=124.79  Aligned_cols=120  Identities=7%  Similarity=-0.047  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +..++.++.+|....+.|+|++|...++.++++.|++..++.+++.++.+++++++|+..+++++..+|+++.+++.+|.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++.++|+|++|...|++++..+|+++.++..++.++...|
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            6666666666666666666655665666666555555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.5e-10  Score=118.07  Aligned_cols=112  Identities=37%  Similarity=0.522  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      ..+...|+..|..|+|+.|+.+|.++|.++|.|...|.|+..+|..+++|++|+++-.+.++++|.+++.|.++|.+++.
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      +|+|++|+..|.+.|+.+|+|...+..+..++
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999988887765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.17  E-value=8.8e-10  Score=101.86  Aligned_cols=110  Identities=21%  Similarity=0.234  Sum_probs=100.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK  558 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  558 (605)
                      ....+..+..++.+|..+...|++++|+.+|+++++..|+.   ..++.++|.++..+|++++|+..++++++.+|++..
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            34466788899999999999999999999999999887653   578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCH
Q 007401          559 AYLRRGTAREALFC--------------YNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       559 ~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~  591 (605)
                      .+..+|.++...|+              +++|++++++++.++|++.
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99999999999888              6889999999999999884

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.17  E-value=4.1e-10  Score=129.12  Aligned_cols=114  Identities=9%  Similarity=-0.021  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+..+|.++.+.|++++|+..|++++.++|+++.++.++|.++.+.|++++|++.|+++++++|+++.+++++|.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .+|++++|+.+|+++++++|++..+....+.+..
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            9999999999999999999999888877776654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.16  E-value=5.7e-10  Score=105.13  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 007401          502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR-EALFC--YNEALQ  578 (605)
Q Consensus       502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  578 (605)
                      .++.++++..|+++++.+|++.+.|..+|.+|..+|++++|+..|+++++++|+++.+++.+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999985 77787  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          579 DFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       579 ~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .++++++++|++..++..++..+...|
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g  158 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQA  158 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence            999999999999999999998877654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.16  E-value=1.3e-10  Score=89.61  Aligned_cols=66  Identities=36%  Similarity=0.531  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF-CYNEALQDFKHAMVLEP  588 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  588 (605)
                      +..|..+|.+++.+++|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4444555555555555555555555555555555555555555555554 35555555555555444

...

>PLN02789 farnesyltranstransferase

Probab=99.16  E-value=4.7e-10  Score=113.13  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=112.6

Q ss_pred             CCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF--QQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~  559 (605)
                      ..+|.....|..++.++...+ ++++++..++++++.+|++..+|+.++.++..+++.  ++++++++++++.+|+|..+
T Consensus        65 ~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~A  144 (320)
T PLN02789         65 RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHA  144 (320)
T ss_pred             HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHH
Confidence            346788899999999999998 689999999999999999999999999999998874  78899999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      |.+++.++..+|++++|+++++++++.+|.|..++.+.+.+...
T Consensus       145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999887654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.9e-10  Score=113.47  Aligned_cols=111  Identities=34%  Similarity=0.552  Sum_probs=103.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007401          479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (605)
Q Consensus       479 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  554 (605)
                      .......+.....|.+.|+.+++.|+|.+|.++|.++|.++|++    +.+|.+++.+...+|+..+|+.+++.++++|+
T Consensus       239 sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  239 SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            33444567888999999999999999999999999999999985    77899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      ...+++..+|.|+..++++++|+++|+++++...+
T Consensus       319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999998765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.15  E-value=1.3e-10  Score=89.68  Aligned_cols=67  Identities=31%  Similarity=0.550  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDK  554 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  554 (605)
                      .+..|..+|..++..|+|++|+.+|+++++++|+++.+++++|.+|+.++ ++.+|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            47889999999999999999999999999999999999999999999999 79999999999999998

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.15  E-value=4.8e-10  Score=91.17  Aligned_cols=99  Identities=38%  Similarity=0.588  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      .++.+|..++..|++++|+..++++++..|++..++..+|.++...+++++|++.++++++..|.+...++.++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCC
Q 007401          571 FCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~  589 (605)
                      |++++|...++++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988773

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.14  E-value=3.4e-10  Score=101.06  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          509 VNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       509 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ...|+++++++|++   ++.+|.++.++|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+.+|+++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999885   668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhC
Q 007401          589 QNKAANLAEKRLRKLIG  605 (605)
Q Consensus       589 ~~~~~~~~~~~~~~~~g  605 (605)
                      +++.++..++.++..+|
T Consensus        90 ~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             CCcHHHHHHHHHHHHcC
Confidence            99999999999988765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=1.2e-09  Score=110.30  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--------
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV--------  557 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--------  557 (605)
                      |+....|+.+|..+...|++++|++.|+++++++|++..++.++|.+++..|++++|+++++++++++|+++        
T Consensus        95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l  174 (296)
T PRK11189         95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYL  174 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            455677777787788888888888888888887887777777888777777777777777777777666442        


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHHccCHHH
Q 007401          558 --------------------------------------------------------------KAYLRRGTAREALFCYNE  575 (605)
Q Consensus       558 --------------------------------------------------------------~~~~~la~~~~~~g~~~~  575 (605)
                                                                                    .+|+++|.++.++|++++
T Consensus       175 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~  254 (296)
T PRK11189        175 AESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE  254 (296)
T ss_pred             HHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence                                                                          346667777777777777


Q ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHH
Q 007401          576 ALQDFKHAMVLEP-QNKAANLAEKR  599 (605)
Q Consensus       576 A~~~~~~al~~~p-~~~~~~~~~~~  599 (605)
                      |+.+|+++++.+| +.......+.+
T Consensus       255 A~~~~~~Al~~~~~~~~e~~~~~~e  279 (296)
T PRK11189        255 AAALFKLALANNVYNFVEHRYALLE  279 (296)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHH
Confidence            7777777777775 44444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.14  E-value=1.1e-09  Score=102.74  Aligned_cols=119  Identities=17%  Similarity=0.127  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.+...+..+|..++..|+|.+|+..+.++..+.|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|.
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm  176 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM  176 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence            34455566689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .|.-.|+++.|...+..+....+.+..+..++..+....
T Consensus       177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            999999999999999999998888988888888776544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.13  E-value=2e-09  Score=103.83  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=109.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKNVKAYLR  562 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~  562 (605)
                      .|.....+..+|..+...|++++|++.|+++++..|++...+.++|.++...|++++|++.++++++..  +.....++.
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            455678899999999999999999999999999999999999999999999999999999999999864  456778999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|.++...|++++|.+.|+++++.+|++...+..++.++...|
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  183 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG  183 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999988888888876543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.13  E-value=1.1e-10  Score=116.99  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....|..+|.++.+.|++++|++.|+++++.+|++..+...++.++...|+++++.+.++...+..|.++..|..+|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++..+|++++|+.+|+++++.+|+|+.++..++.++...|
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred             Hhcccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999887665

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=7.6e-10  Score=111.38  Aligned_cols=118  Identities=30%  Similarity=0.323  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..+..+...|..++..|++..|.+.++++|+++|.+...|..|+..|++.++-.+-.++|++|..+||+|+..||.+|++
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM  403 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence            34778888899999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++-+++|++|+..|++++.++|++..++.+++-++.+.
T Consensus       404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999888888877765543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=2.3e-09  Score=103.35  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      +.....+..+|..++..|++++|++.|++++...  +.....+.++|.++...|++++|.+.++++++.+|++...++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  175 (234)
T TIGR02521        96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL  175 (234)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence            4456788999999999999999999999999853  55678899999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +.++...|++++|...++++++..|.+...+.....++...
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL  216 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888887777766554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6.6e-10  Score=111.16  Aligned_cols=117  Identities=21%  Similarity=0.236  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      .+..+-.|+.|...++.++|+.+|+++++++|....+|..+|.=|+.+.+...|++.|++|++++|.+-.+||-+|++|.
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            44566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      -++-..=|+-+|++|+++.|+|...+..++.|+.+++
T Consensus       410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~  446 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN  446 (559)
T ss_pred             HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.10  E-value=1.8e-09  Score=123.99  Aligned_cols=116  Identities=16%  Similarity=0.055  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+..++..+...|++++|+..|+++++.+|+ ..++.++|.++.++|++++|+..|+++++++|+++.+++++|.++.
T Consensus       576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~  654 (987)
T PRK09782        576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW  654 (987)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344445566666779999999999999999997 9999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ..|++++|++.|+++++++|++..++..++.++..+|
T Consensus       655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG  691 (987)
T PRK09782        655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD  691 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999988765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=8.1e-10  Score=113.70  Aligned_cols=103  Identities=14%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .+++.+..+|..|...|+|++|+.+|+.||..+|++...|+.+|..+..-.+..+|++.|++|+++.|.+..++|++|.+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      +..+|.|++|.++|-.+|.+.++
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999998765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.06  E-value=2.7e-09  Score=119.27  Aligned_cols=118  Identities=14%  Similarity=0.074  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNK----AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      |.....+..+|..+...|++++    |+..|+++++++|++..++.++|.++...|++++|+..++++++++|+++.+++
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3445666667777777777764    677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++|.++.+.|++++|++.|+++++.+|++...+...+.++..
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~  364 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ  364 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            777777777777777777777777777665555444444433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.06  E-value=4.9e-10  Score=90.13  Aligned_cols=82  Identities=26%  Similarity=0.395  Sum_probs=74.2

Q ss_pred             HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 007401          501 KGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQ  578 (605)
Q Consensus       501 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  578 (605)
                      .+|+|++|+..|+++++..|.  +...++.+|.||++.|+|++|+..+++ .+.++.+...++.+|.|++++|+|++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  567788899999999999999999999 88899899999999999999999999999


Q ss_pred             HHHHH
Q 007401          579 DFKHA  583 (605)
Q Consensus       579 ~~~~a  583 (605)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.03  E-value=4.3e-09  Score=102.69  Aligned_cols=112  Identities=21%  Similarity=0.229  Sum_probs=102.3

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK-  558 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-  558 (605)
                      +.....++.++.+|..+++.|+|++|+..|++++..+|+++   .+++.+|.+|+..+++++|+..|+++++.+|+++. 
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            34456788999999999999999999999999999999876   57899999999999999999999999999998876 


Q ss_pred             --HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          559 --AYLRRGTAREAL--------FCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       559 --~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                        +++.+|.++...        |++++|++.|+++++.+|++....
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence              799999999987        889999999999999999987654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.03  E-value=1.1e-08  Score=94.14  Aligned_cols=107  Identities=17%  Similarity=0.084  Sum_probs=94.5

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ....+..|+.+|..+...|+|++|+..|++++.+.++   .+.++.++|.++..+|++++|+..|+++++++|.+...+.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            4457889999999999999999999999999988765   3568999999999999999999999999999999999999


Q ss_pred             HHHHHHH-------HccCHH-------HHHHHHHHHHHhCCCCH
Q 007401          562 RRGTARE-------ALFCYN-------EALQDFKHAMVLEPQNK  591 (605)
Q Consensus       562 ~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~  591 (605)
                      ++|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus       111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999998       777766       66777777888888664

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.03  E-value=5.2e-09  Score=102.09  Aligned_cols=122  Identities=16%  Similarity=0.058  Sum_probs=106.0

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhc
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLEL--------GCFQQAEEDCSKTISL  552 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~~  552 (605)
                      ..+...+.++.+|..+++.|++++|+..|+++++..|++..   +++.+|.++++.        +++++|++.|+++++.
T Consensus        65 ~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302        65 FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            34455678999999999999999999999999999998766   799999999887        7899999999999999


Q ss_pred             CCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhhC
Q 007401          553 DKKNVKAY-----------------LRRGTAREALFCYNEALQDFKHAMVLEPQN---KAANLAEKRLRKLIG  605 (605)
Q Consensus       553 ~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g  605 (605)
                      +|++..++                 +.+|..++..|++++|+..|+++++..|++   ..++..++.++..+|
T Consensus       145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg  217 (235)
T TIGR03302       145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG  217 (235)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence            99986542                 467889999999999999999999998765   578888888887664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.03  E-value=8.2e-09  Score=101.07  Aligned_cols=112  Identities=14%  Similarity=0.043  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 007401          489 SELLKEKGNAA-FKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYL  561 (605)
Q Consensus       489 a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  561 (605)
                      ...++..+..+ ++.|+|++|+..|++.++.+|++   +.+++.+|.+|+..++|++|+..|+++++.+|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34566667766 66899999999999999999998   5899999999999999999999999999998874   67999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .+|.++..+|++++|.+.|+++++..|+...+.....++
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            999999999999999999999999999998776665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.02  E-value=3.5e-09  Score=97.41  Aligned_cols=122  Identities=19%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ..|+..+.+++.|..++.+|+|++|...|++|+..  .+.-+..|.|+|.|.++.|++++|.++|+++++++|+++....
T Consensus        98 l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063          98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence            35778999999999999999999999999999983  3456889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .++..++..|+|-.|...+++...--+-....+....++.+.+|
T Consensus       178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g  221 (250)
T COG3063         178 ELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG  221 (250)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence            99999999999999999999998887777777766666665544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.01  E-value=7.7e-09  Score=111.47  Aligned_cols=131  Identities=20%  Similarity=0.210  Sum_probs=97.0

Q ss_pred             hhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          453 KFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA  530 (605)
Q Consensus       453 ~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  530 (605)
                      ..++..|..+...  +.++.+..     .+.+...|.....|+.+|.+|.++|+.++++...-.|-.++|++.+.|..++
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~-----~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la  214 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEIL-----MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHH-----HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            3455555554443  22333333     3344556677778888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       531 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ....++|++.+|.-+|.+||+++|.+.+..+.++..|.++|++..|+..|.++++++|
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            8888888888888888888888888888888888888888888888888888888877

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.99  E-value=4.6e-09  Score=92.79  Aligned_cols=96  Identities=16%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       510 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      +.|++++..+|++....+.+|.++++.+++++|++.+++++.++|.++.+|+++|.++..+|++++|..+|+++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhC
Q 007401          590 NKAANLAEKRLRKLIG  605 (605)
Q Consensus       590 ~~~~~~~~~~~~~~~g  605 (605)
                      +...+..++.++...|
T Consensus        84 ~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        84 DPRPYFHAAECLLALG   99 (135)
T ss_pred             ChHHHHHHHHHHHHcC
Confidence            9999999998887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=8.7e-09  Score=104.56  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...++-.+..++..|++++|...++..++..|+|+.++..++++++..++..+|.+.+++++.++|+.+..++++|.+|.
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all  385 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL  385 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +.|++++|+..++..+..+|+|+..|..+++.+..+|
T Consensus       386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            6666666666666666666666666666666665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.99  E-value=8.7e-09  Score=115.27  Aligned_cols=115  Identities=13%  Similarity=0.092  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ----AEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .+..++..+.+.|++++|+..|++++..+|+++.+++++|.++...|++++    |+..|+++++++|+++.++.++|.+
T Consensus       214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~  293 (656)
T PRK15174        214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA  293 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            335668889999999999999999999999999999999999999999986    8999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +...|++++|+..++++++++|++..++..++.++...|
T Consensus       294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G  332 (656)
T PRK15174        294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG  332 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999998887654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=1.8e-09  Score=82.08  Aligned_cols=62  Identities=15%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  556 (605)
                      +|..+++.|+|++|++.|+++++.+|++..+++.+|.+++.+|++++|+..|+++++++|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            34444444455555555555544444444445555555544445555544444444444444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.98  E-value=3.9e-09  Score=101.80  Aligned_cols=109  Identities=24%  Similarity=0.251  Sum_probs=104.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.+++.+.++|..++..|++.+|+..|..+++.+|++..+++.+|.+|+.+|+-..|+.++.+.+++.|++..+...+|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      .++.++|++++|...|++.++.+|++...
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~  142 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLV  142 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence            99999999999999999999999966433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.97  E-value=2.6e-09  Score=81.21  Aligned_cols=65  Identities=25%  Similarity=0.310  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          527 SNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       527 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      +.+|..+++.|+|++|++.|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999975

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.96  E-value=1.2e-08  Score=112.81  Aligned_cols=109  Identities=11%  Similarity=-0.049  Sum_probs=104.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|...+++..++..+.+++++++|+..+++++..+|+++..++.+|.++.++|+|++|+..|+++++.+|+++.++..+|
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a  195 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA  195 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      .++...|+.++|...|+++++....-...
T Consensus       196 ~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        196 QSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            99999999999999999999997665544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.95  E-value=1.2e-08  Score=121.74  Aligned_cols=117  Identities=23%  Similarity=0.228  Sum_probs=105.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT--------------YYSNRAAAYLELGCFQQAEEDCSKTI  550 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al  550 (605)
                      .|+....+..+|.+++++|++++|+.+|+++++.+|++..              .+..+|.++...+++++|++.|++++
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4556889999999999999999999999999999997642              23456889999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      +++|+++.+++.+|.++...|++++|++.|+++++++|++..++..+..++
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887777665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.93  E-value=3.8e-08  Score=103.72  Aligned_cols=100  Identities=15%  Similarity=0.058  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-VKAYLRRGTAREA  569 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~  569 (605)
                      .+..+|..+.+.|++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++.+|.+ ..++..++.+|..
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555555555555443 2344445555555


Q ss_pred             ccCHHHHHHHHHHHHHhCCCC
Q 007401          570 LFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~  590 (605)
                      .|++++|...++++++.+|+.
T Consensus       262 ~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        262 LGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             cCCHHHHHHHHHHHHHhCCCc
Confidence            555555555555555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.93  E-value=9e-09  Score=90.56  Aligned_cols=91  Identities=14%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          515 AIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       515 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      +..+. ++.-+..+.+|..+++.|++++|.+.|+.+..+||.+...|+++|.|+..+|+|++|+.+|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34566 77888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 007401          594 NLAEKRLRKLIG  605 (605)
Q Consensus       594 ~~~~~~~~~~~g  605 (605)
                      +.+.+.++..+|
T Consensus       106 ~~~ag~c~L~lG  117 (157)
T PRK15363        106 PWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHHcC
Confidence            999999988765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.93  E-value=2e-08  Score=114.62  Aligned_cols=117  Identities=13%  Similarity=0.100  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +..+..+..+|..+...|++++|++.|+++++.+|+++.++..++.++...+++++|+..++++++.+|+++. ++.+|.
T Consensus        46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~  124 (765)
T PRK10049         46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY  124 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            3457779999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++...|++++|+..++++++++|++..++..++.++..
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888776653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=3.2e-09  Score=97.70  Aligned_cols=101  Identities=38%  Similarity=0.543  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..+..+.+.|+.+|...+|+.|+.+|.++|.++|..+..|.+++.||+++++++.+..+++++++++|+..+++|.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhC
Q 007401          567 REALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~  587 (605)
                      +.+...|++|+..++++..+.
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHH
Confidence            999999999999999997664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.92  E-value=3.1e-08  Score=85.65  Aligned_cols=109  Identities=18%  Similarity=0.179  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLR  562 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  562 (605)
                      ...++..|...++.|+|++|++.|+.+....|..   ..+...++.+|++.++|.+|+..+++-++++|.++   .++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            6788999999999999999999999999988764   67899999999999999999999999999999886   49999


Q ss_pred             HHHHHHHccC---------------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          563 RGTAREALFC---------------YNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       563 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      +|.+++.+.+               ..+|...|++.++..|++..+....
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~  139 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR  139 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            9999999887               8999999999999999998776544

>PLN02789 farnesyltranstransferase

Probab=98.90  E-value=3.3e-08  Score=99.78  Aligned_cols=119  Identities=16%  Similarity=0.129  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +..+.+--+-.++...+++++|+..++++|+++|++..+|..++.++..++ ++++++.+++++++.+|++..+|+.++.
T Consensus        35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~  114 (320)
T PLN02789         35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence            333334333345677889999999999999999999999999999999998 6899999999999999999999999999


Q ss_pred             HHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCY--NEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++.++++.  ++++.+++++++.+|+|..++.+.+.++..+|
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~  156 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG  156 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence            99999874  78899999999999999999999999887653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.90  E-value=3.1e-08  Score=118.33  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------
Q 007401          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA------  566 (605)
Q Consensus       493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------  566 (605)
                      ..+|..+++.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..++.+      
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            34466666777777777777777777777777777777777777777777777777777777666555443332      


Q ss_pred             ------------------------------------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          567 ------------------------------------REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       567 ------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                                                          +...|++++|++.|+++++++|++..++..++.++...
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~  508 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA  508 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                                                33456677777777777777777766666666665544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1e-08  Score=98.84  Aligned_cols=108  Identities=34%  Similarity=0.518  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      .+.++.+...|+.||+.++|..|+..|.+.|+....    ++.+|.||+.|.+.+++|..|+.++.++++++|.+.++++
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~  157 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI  157 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence            457899999999999999999999999999997544    4678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      +-|.|++++.++++|..+++..++++-+...+
T Consensus       158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            99999999999999999999888776554433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=5e-08  Score=93.85  Aligned_cols=141  Identities=13%  Similarity=0.116  Sum_probs=124.4

Q ss_pred             HHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 007401          460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF  539 (605)
Q Consensus       460 ~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  539 (605)
                      ++..+.++++++.+.+..+....+.+.+.++.|++++..+....+.++|+..++++++.+|++..+-..+|.+++..|+|
T Consensus       151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y  230 (389)
T COG2956         151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY  230 (389)
T ss_pred             HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence            44556678888888777667777778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          540 QQAEEDCSKTISLDKKN-VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       540 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      ++|++.++++++.||+. +.+...+..||.++|+.++.+..+.++.+..++..........+
T Consensus       231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~li  292 (389)
T COG2956         231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLI  292 (389)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHH
Confidence            99999999999999987 46888999999999999999999999999988765544443333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.88  E-value=5.6e-08  Score=113.40  Aligned_cols=119  Identities=26%  Similarity=0.221  Sum_probs=91.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.....+..+|..++..|++++|+..|++++..+|++..++..++.+++..+++++|++.++++++.+|.+..+++.+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  200 (899)
T TIGR02917       121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG  200 (899)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34556777777888888888888888888888777777777788888888888888888888888777777777788888


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      .++...|++++|...|+++++.+|++...+..++.++..
T Consensus       201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  239 (899)
T TIGR02917       201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE  239 (899)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            888888888888888888887777777776666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.1e-08  Score=105.44  Aligned_cols=82  Identities=15%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ++++..||.+|+..++|++|+++|+.|+..+|+|...|.++|-.+..-.+.++|+..|++|+++.|+...+++.++-.+.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence            44556666666666777777777777777777777777777777777777777777777777777777777766666554


Q ss_pred             hh
Q 007401          603 LI  604 (605)
Q Consensus       603 ~~  604 (605)
                      .+
T Consensus       510 Nl  511 (579)
T KOG1125|consen  510 NL  511 (579)
T ss_pred             hh
Confidence            43

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.86  E-value=9.3e-08  Score=100.74  Aligned_cols=120  Identities=20%  Similarity=0.190  Sum_probs=100.8

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  559 (605)
                      .+.....+..++..+.+.|++++|++.|+++++..|.+.     ..+..+|..+.+.+++++|++.|+++++.+|++..+
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  216 (389)
T PRK11788        137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA  216 (389)
T ss_pred             CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence            345567888899999999999999999999998877653     356788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhh
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQN-KAANLAEKRLRKLI  604 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~  604 (605)
                      ++.+|.++.+.|++++|++.|+++++.+|.+ ...+..+..++...
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999988876 34555666665544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.85  E-value=3.7e-08  Score=114.86  Aligned_cols=119  Identities=20%  Similarity=0.132  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |+....+..+|..+...|++++|++.|+++++.+|+++.++.+++..+...++ .+|+..+++++++.|+++..+..+|.
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~  845 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW  845 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999 88999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|++.|+++++++|.+..++..++.++...|
T Consensus       846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999998888877654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.84  E-value=7.2e-08  Score=98.00  Aligned_cols=121  Identities=19%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      ..|++...+-..+.++++.+++++|++.+++++.++|+....+.++|+.|++.|++++|+..+++.+..+|+++..|.++
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L  414 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL  414 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence            35677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +.+|..+|+..+|...+.+.+.+..+...+...+....++.
T Consensus       415 Aqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         415 AQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999888888888887777776666655543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.82  E-value=6.5e-09  Score=105.51  Aligned_cols=114  Identities=39%  Similarity=0.529  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      +..+.+.++.++..++|+.|+..|.++|+++|+++..+.+++.++.+.++|..|+.++.+|++++|...++|+++|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .++++.+|+..|++...+.|+++.+...+..+..
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999988887754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.81  E-value=1.3e-07  Score=90.29  Aligned_cols=110  Identities=20%  Similarity=0.197  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGT  565 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~  565 (605)
                      .++.+..+++.|+|.+|...|.+.++..|++   +.++|.||++++.+|+|++|...|..+++-.|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888999999999999999999999999986   7899999999999999999999999999988765   679999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      ++..+|+.++|...|+++++..|+...+......+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~  259 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK  259 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            999999999999999999999999988877666553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=2.2e-08  Score=95.91  Aligned_cols=90  Identities=21%  Similarity=0.206  Sum_probs=85.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|+++-.|++++-.|.+.|.|+.|++..+.+|.++|+++.+|..+|.+|+.+|+|.+|++.|++++.+||+|...+-+|.
T Consensus       111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK  190 (304)
T ss_pred             CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence            56779999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHccCHH
Q 007401          565 TAREALFCYN  574 (605)
Q Consensus       565 ~~~~~~g~~~  574 (605)
                      .+-.++++..
T Consensus       191 ~Ae~~l~e~~  200 (304)
T KOG0553|consen  191 IAEQKLNEPK  200 (304)
T ss_pred             HHHHHhcCCC
Confidence            8887777665

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=6.9e-08  Score=89.26  Aligned_cols=107  Identities=28%  Similarity=0.398  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGT----------SATYYSNRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~  548 (605)
                      .....+.+.|+.+|+.|+|.+|...|..|+..        .|.          ....+.|+++|++..++|-++++.++.
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            44678899999999999999999999999842        233          356789999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       549 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      .++.+|.|.++||.+|.++...=+.++|...|+++|+++|.-..+
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999999999976544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.80  E-value=1.7e-07  Score=78.22  Aligned_cols=104  Identities=28%  Similarity=0.309  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----VKAYL  561 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~  561 (605)
                      .+....+-..|..+...|+.+.|++.|.+++.+.|..+.+|+|+++.+...++.++|++++++|+++.-..    -.+|.
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v  119 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV  119 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            34566777889999999999999999999999999999999999999999999999999999999986443    35899


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      .+|.+|..+|+.+.|...|+.+-++...
T Consensus       120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  120 QRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999999999999887543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.79  E-value=4.3e-08  Score=104.20  Aligned_cols=107  Identities=23%  Similarity=0.178  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE--DCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l  563 (605)
                      +..+..|+..|..+..+|++++|.+.|..++.++|++......+|.++.+.|+-.-|..  .+..++++||.|+++||++
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            56688999999999999999999999999999999999999999999999998666666  9999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      |.++.++|+.++|.+||+.++++++.++.
T Consensus       761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  761 GEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999988753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.78  E-value=1.3e-07  Score=102.35  Aligned_cols=119  Identities=19%  Similarity=0.161  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ...+.+..+|+.++..|++++|++.+.++|+.+|.++.+|+.+|.+|.++|+.+++..+.-.|-.++|++...|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            44778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ..++|++++|..||.+|++.+|.+....+....+++++|
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G  255 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG  255 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999888776

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.78  E-value=2.1e-07  Score=106.37  Aligned_cols=112  Identities=13%  Similarity=-0.001  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....+..++..+...|++++|++.|++++...|++..++..+|.++...|++++|++.++++++++|++..+++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      ..+|++++|++.++++++.+|+++.+......
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999877665443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.78  E-value=1e-07  Score=89.80  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |++... .+++..+...|+-+++..+..++...+|.+...+..+|......|+|.+|+..++++..++|+++++|.-+|.
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga  142 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA  142 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence            444555 8889999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +|.+.|++++|...|.+++++.|+++.+..+++..+...
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            999999999999999999999999999999998877653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.75  E-value=5.2e-08  Score=75.89  Aligned_cols=68  Identities=26%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       531 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      .+|++.++|++|+++++++++++|+++..|+.+|.++..+|++++|.++|+++++.+|++..+.....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            45555666666666666666666666666666666666666666666666666666665555544443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=7e-08  Score=99.30  Aligned_cols=118  Identities=20%  Similarity=0.272  Sum_probs=103.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----GT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV  557 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  557 (605)
                      .|.+.-.+.++|...+..+.|.+|+.+|++++..-    ++   -...+.|+|.++.+++.|.+|+.+|++++.+.|+++
T Consensus       410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~  489 (611)
T KOG1173|consen  410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA  489 (611)
T ss_pred             CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence            45667788899999999999999999999998432    22   245689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ..+-.+|.+|..+|+++.|++.|.++|.++|+|..+...++.+.+
T Consensus       490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999877777666543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.73  E-value=3.8e-08  Score=75.44  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ++.|+|++|++.|++++..+|++..+++.++.||++.|++++|.+.+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456667777777777777777777777777777777777777777777777666666655555543

...

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=2.7e-07  Score=86.10  Aligned_cols=131  Identities=15%  Similarity=0.075  Sum_probs=97.1

Q ss_pred             HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007401          466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED  545 (605)
Q Consensus       466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  545 (605)
                      ..++++......     .++|.+.-.+...--..-.+|+--+||+.+.+-++..+.+.++|..++.+|...++|.+|.-+
T Consensus       102 ~~~A~e~y~~lL-----~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen  102 YKEAIEYYESLL-----EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hhhHHHHHHHHh-----ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            344555543332     233454555555555666677777888888888888888888888888888888888888888


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          546 CSKTISLDKKNVKAYLRRGTAREALF---CYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       546 ~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      |++.+-+.|.++..+.++|.+++-+|   +++-|.++|.++++++|.+..+++.+-.+-
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            88888888888888888888877665   466788888888888887777777665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=3.3e-07  Score=78.05  Aligned_cols=96  Identities=18%  Similarity=0.032  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---NVKAYLRR  563 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  563 (605)
                      +.+++.|..+-..|+.++|+..|++++....+.   ..++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            468899999999999999999999999976544   678999999999999999999999999999888   78888889


Q ss_pred             HHHHHHccCHHHHHHHHHHHHH
Q 007401          564 GTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~  585 (605)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=9e-08  Score=74.52  Aligned_cols=70  Identities=19%  Similarity=0.354  Sum_probs=65.5

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ...|++.++|++|++++++++.++|+++..+..+|.++.++|+|.+|+++++++++.+|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999999887776554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=2e-08  Score=96.43  Aligned_cols=120  Identities=14%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~  561 (605)
                      .+.+.+.....|..||..++.+-|+.+|++.+++.-.+++.+.|+|.|.+..++|+-++..|++|+..-.   .-++.||
T Consensus       320 ~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY  399 (478)
T KOG1129|consen  320 HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY  399 (478)
T ss_pred             CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence            3455667777889999999999999999999999999999999999999999999999999999998643   3467999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++|.+....|++..|..+|+-++..++++..++.+++.+..+.
T Consensus       400 Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  400 NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence            9999999999999999999999999999999999988776544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=5e-08  Score=97.28  Aligned_cols=117  Identities=22%  Similarity=0.211  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      +.++.+.|++.|..|+|++|.+.|++++..+....++++++|..+-.+|+.++|+++|-+.-.+--++.+.++.++.+|.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55677889999999999999999999999999999999999999999999999999998877766788999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .+.+..+|++++.++..+-|+++.++..++.++.+.|
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqeg  606 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG  606 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999998887654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.65  E-value=2.7e-07  Score=95.29  Aligned_cols=87  Identities=22%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.....|+.+|.++++.|+|++|+..+++++.++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|+++.+...++
T Consensus        32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         32 DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcc
Q 007401          565 TAREALF  571 (605)
Q Consensus       565 ~~~~~~g  571 (605)
                      .|...+.
T Consensus       112 ~~~~kl~  118 (356)
T PLN03088        112 ECDEKIA  118 (356)
T ss_pred             HHHHHHH
Confidence            8876663

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.65  E-value=7.9e-08  Score=73.66  Aligned_cols=68  Identities=19%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          533 YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       533 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      +++.|+|++|++.|+++++.+|++..+++.++.+|.+.|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999988877766543

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.7e-07  Score=92.17  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+.+++.++.+.++|.+|+...++++.++|+|..++|.+|.+++.+++|+.|+.+|+++++++|+|-.+...+..|..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HccCHHHH-HHHHHHHHHhCC
Q 007401          569 ALFCYNEA-LQDFKHAMVLEP  588 (605)
Q Consensus       569 ~~g~~~~A-~~~~~~al~~~p  588 (605)
                      +..++.+. .+.|.+++..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            88877665 778888887654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.64  E-value=8.7e-07  Score=86.24  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY---SNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYL  561 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  561 (605)
                      ..+.++..|..+++.|+|++|++.|++++...|....+.   +.+|.+|++.++|++|+..+++.++++|+++   .++|
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            467788999999999999999999999999999986554   8999999999999999999999999998774   5899


Q ss_pred             HHHHHHHHcc---------------C---HHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          562 RRGTAREALF---------------C---YNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       562 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      .+|.++...+               +   ..+|++.|++.++..|+...+...
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A  163 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA  163 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999875554               1   357889999999999988654443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.62  E-value=1.5e-07  Score=94.32  Aligned_cols=117  Identities=19%  Similarity=0.153  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ...+......+.+.++++++...++++....  +.++.+|..+|.++.+.|++++|+++|+++++++|+++.++..++.+
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~  189 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL  189 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4456666778899999999999999987655  67899999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +...|+++++.+.++...+..|.++..+..++.++..+|
T Consensus       190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg  228 (280)
T PF13429_consen  190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG  228 (280)
T ss_dssp             HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred             HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence            999999999999999999888888888888888777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.62  E-value=7.8e-07  Score=85.82  Aligned_cols=116  Identities=22%  Similarity=0.270  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .++..+-++|....+|++|++.-++..++.++.     +..|..+++.+....++++|...+.+|++.||++..+-..+|
T Consensus       142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            456778889999999999999999999988765     778999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQN-KAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g  605 (605)
                      .++...|+|++|++.++.+++.||+. ..+...+..+|..+|
T Consensus       222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg  263 (389)
T COG2956         222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG  263 (389)
T ss_pred             HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999977 567777777777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.61  E-value=4.3e-07  Score=92.92  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=67.4

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLD  553 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~  553 (605)
                      ...+|+.+..|+++|..|++.|+|++|+..|+++++++|++.++   |+++|.+|.++|++++|++++++|+++.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34578889999999999999999999999999999999999855   9999999999999999999999999983

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.61  E-value=6.5e-07  Score=80.11  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      +-.....+.+|..++..|+|++|+..|++++...++.   ..+...++.+++..++|++|+..++. +.-.+-.+.++..
T Consensus        45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~  123 (145)
T PF09976_consen   45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL  123 (145)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence            3446788889999999999999999999999987665   45788899999999999999999966 3444456778899


Q ss_pred             HHHHHHHccCHHHHHHHHHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAM  584 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al  584 (605)
                      +|.+|...|++++|...|++++
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999874

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.61  E-value=6.4e-07  Score=101.18  Aligned_cols=98  Identities=12%  Similarity=-0.029  Sum_probs=50.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 007401          494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCY  573 (605)
Q Consensus       494 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  573 (605)
                      .+...+...|++++|+.++++++...|.....+..+|.++..+++|++|++.|+++++.+|+++.+++.++.++...++.
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            34444444455555555555555222222333333344555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 007401          574 NEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       574 ~~A~~~~~~al~~~p~~~  591 (605)
                      ++|++.++++.+.+|++.
T Consensus       153 ~eAl~~l~~l~~~dp~~~  170 (822)
T PRK14574        153 GVVLKQATELAERDPTVQ  170 (822)
T ss_pred             HHHHHHHHHhcccCcchH
Confidence            555555555555555533

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.61  E-value=4e-07  Score=99.19  Aligned_cols=119  Identities=15%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .+..++.++.+|..+..+|+|++|..+|.++++.++++ .-.++.+|+.|+..|++..++.+|++.++..|++.+....+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            34567888999999999999999999999999988887 77788999999999999999999999999999999999999


Q ss_pred             HHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          564 GTAREALF----CYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       564 a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      |.+|...+    ..++|...+.++++..|.|..++..++.++..
T Consensus       383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            98888775    56788889999999999999988888887654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.60  E-value=1.9e-07  Score=95.53  Aligned_cols=70  Identities=13%  Similarity=0.063  Sum_probs=67.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA---YLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       518 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      .+|+++..++++|.+|+++++|++|+..|+++++++|++..+   ||++|.+|..+|++++|+++|++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999854   9999999999999999999999999973

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.59  E-value=5.4e-07  Score=80.40  Aligned_cols=96  Identities=20%  Similarity=0.217  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Q 007401          505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC----------FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC--  572 (605)
Q Consensus       505 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--  572 (605)
                      |++|.+.|+.....+|.+++.+++-|.+++.+.+          +++|++-|++|+.++|+...+++++|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999998887743          6778889999999999999999999999977754  


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          573 ---------YNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       573 ---------~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                               |++|.++|+++...+|+|...+..+...
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     8899999999999999999888777654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.58  E-value=1e-06  Score=83.56  Aligned_cols=109  Identities=19%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYL  561 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  561 (605)
                      ..+.++..|..+++.|+|.+|+..|++++...|..   ..+.+.+|.+++..++|.+|+..+++.++..|+++   .++|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46789999999999999999999999999998875   78899999999999999999999999999999864   5999


Q ss_pred             HHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          562 RRGTAREALF-----------CYNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       562 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      .+|.+++.+.           ...+|+..|+..++..|+...+...
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A  129 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA  129 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH
Confidence            9999976653           3458999999999999998655433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.56  E-value=1.6e-06  Score=97.93  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....+..+|..+..+|+|++|++.|+++++.+|+++.++..++..+.+.+++++|++.++++.+.+|.+... ..++.++
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence            356666678899999999999999999999999999999999999999999999999999999999985554 5566666


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ...+++.+|++.|+++++.+|++..++..+..++...|
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            66788878999999999999999999888777665543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.6e-07  Score=91.79  Aligned_cols=119  Identities=20%  Similarity=0.272  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA------------TYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~  553 (605)
                      ...+++++-.|.+++...+.+.|+..|++++.++|+..            ..+...|+-.++.|+|.+|.++|..+|.+|
T Consensus       200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            45678888999999999999999999999999999863            457788999999999999999999999999


Q ss_pred             CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          554 KKN----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       554 p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      |+|    +..|++++.+..++|+.++|+..+++++++++.-..++...+.++..+
T Consensus       280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence            975    568999999999999999999999999999999999998888887654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.54  E-value=5.8e-07  Score=82.66  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREAL  570 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~  570 (605)
                      .+.+|-..+|..+...+.+.++.++.+  ...++++|.++..++++++|+..|++++.+.++.   +.+|+++|.++...
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence            345566677888888887776666655  7788999999999999999999999999987653   45899999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      |++++|++.|+++++++|.+...+..++.++..
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~  118 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQALNNMAVICHY  118 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            999999999999999999999988888887763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.54  E-value=7.8e-07  Score=92.48  Aligned_cols=104  Identities=14%  Similarity=-0.015  Sum_probs=94.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV----KAY  560 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~  560 (605)
                      .+.....+..+|..+..+|++++|+..++++++++|++..++..+|.++++.|++++|+..+++++...|.++    ..|
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence            4566778888999999999999999999999999999999999999999999999999999999999987543    356


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      +.++.++...|++++|...|++++...|
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            7899999999999999999999987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=5.2e-07  Score=82.13  Aligned_cols=107  Identities=21%  Similarity=0.143  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      .+.+..+++.|..|-..|-+.-|--.|.+++.+.|+.+++++.+|..+.+.|+|+.|.+.|+..+++||.+-.++.|+|.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            36689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      .++.-|+|+-|.+.+.+-.+-+|+|+.
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChH
Confidence            999999999999999999999999974

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.53  E-value=2.6e-06  Score=91.72  Aligned_cols=104  Identities=20%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------
Q 007401          488 ASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-----------------------------  535 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----------------------------  535 (605)
                      .+..++..|..++..++   +.+|+.+|+++++++|+++.++..++.+|..                             
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            46667778888877665   7899999999999999987776665555432                             


Q ss_pred             ---------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          536 ---------------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       536 ---------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                                     .|++++|...+++|++++| +..+|..+|.++...|++++|.+.|++|++++|.++.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence                           3455566666666666665 3556666666666666666666666666666665553

>PRK11906 transcriptional regulator; Provisional

Probab=98.49  E-value=6.3e-06  Score=84.65  Aligned_cols=112  Identities=11%  Similarity=-0.038  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC
Q 007401          491 LLKEKGNAAFKGK---QWNKAVNYYSEAI---KLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       491 ~~~~~g~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~  555 (605)
                      .++..|...+..+   +.++|+.+|.+++   .++|+++.+|..++.||+..         .+..+|.+..++|+++||.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4466666665555   3456777777777   77777777777777777654         1355677777777777777


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      |+.++..+|.++...++++.|...|++++.++|+.+.++...+.++.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777666543

>PRK11906 transcriptional regulator; Provisional

Probab=98.48  E-value=2.1e-06  Score=88.08  Aligned_cols=110  Identities=11%  Similarity=-0.051  Sum_probs=99.3

Q ss_pred             CChHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007401          484 GSIDASELLKEKGNAAFKG---------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  554 (605)
                      -+|..+..|..++.+++..         .+-.+|.+.-+++++++|.|+.++..+|.++...++++.|+..|++|+.++|
T Consensus       290 ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P  369 (458)
T PRK11906        290 IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST  369 (458)
T ss_pred             CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC
Confidence            3567788888888888664         2456889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      +++.+|+..|.++...|+.++|.+.++++++++|.-..+
T Consensus       370 n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        370 DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            999999999999999999999999999999999976543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=3.5e-07  Score=96.86  Aligned_cols=111  Identities=16%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      +.+.+.+|...+..++|.++.++++..++++|-....|+++|.|..++++++.|.++|.+++.++|++..+|+|++-+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            34445556666777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      ..++..+|...++++++.+-++...+.+...
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENyml  595 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENYML  595 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence            9999999999999999988766665554443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=6.8e-06  Score=76.94  Aligned_cols=112  Identities=12%  Similarity=0.044  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF  571 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  571 (605)
                      ....|..+...|+|++|+++|+..++-+|.+...+...-.+...+|.-.+|++.+...++..+++.++|..++.+|...|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            33445556666666666666666666666666666555555555666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          572 CYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +|++|.-|+++.+-+.|.++.....++.++..
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt  200 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT  200 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            66666666666666666666666555555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.46  E-value=2.1e-06  Score=91.59  Aligned_cols=118  Identities=20%  Similarity=0.124  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .-..|...+..+.+.++-++|..++.++-+++|..+..|+.+|.++...+++.+|.+.|..|+.+||+++.....+|.++
T Consensus       649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            34677788888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          568 EALFCYNEALQ--DFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       568 ~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .+.|+...|..  .+..+++++|.+..+|++++.+..+.|
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G  768 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG  768 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence            99999988888  999999999999999999999998876

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.5e-06  Score=94.87  Aligned_cols=119  Identities=17%  Similarity=0.120  Sum_probs=108.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-VKAY  560 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~  560 (605)
                      ++..+..+.-+++.+|-.|+|+.+...++-++....+   -++.+|.+|.+|+.+|+|++|..+|.++++.++++ .-.+
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            3455778889999999999999999999999987644   35679999999999999999999999999999998 7789


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +-+|+.|...|+++.|..+|++.++..|++......++.++..
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~  388 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH  388 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence            9999999999999999999999999999999999999988764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3.2e-06  Score=81.80  Aligned_cols=101  Identities=17%  Similarity=0.067  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHH
Q 007401          504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC---YNEALQDF  580 (605)
Q Consensus       504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~  580 (605)
                      +.++-+.-++.-+..+|+|.+-|..+|.+|+.++++..|...|.+|+++.|+|++.+.-+|.++..+.+   ..++.+.|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            455667778888999999999999999999999999999999999999999999999999998766543   57899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          581 KHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       581 ~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +++++++|.|..+...++..+...
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~  240 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQ  240 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHc
Confidence            999999999999999988766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1e-06  Score=90.87  Aligned_cols=117  Identities=15%  Similarity=0.042  Sum_probs=110.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|+.+..|+..|-.|+..+++.+|..+|.|+..++|.+..+|...|..+...++.++|+.+|..|-++-|..-...+++|
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg  387 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG  387 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      .-|.++++++.|.+.|.+|+.+.|.|+.....++.+.
T Consensus       388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva  424 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA  424 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence            9999999999999999999999999999888777643

>TIGR00540 hemY_coli hemY protein

Probab=98.43  E-value=2.7e-06  Score=90.04  Aligned_cols=118  Identities=12%  Similarity=-0.053  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY--SNRAAAYLELGCFQQAEEDCSKTISLDKKNV--KAYLR  562 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~  562 (605)
                      +....+..++..+...|++++|++.++++++..|++....  ..+....+..++.+++++.++++++.+|+++  ..+..
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            4678899999999999999999999999999999987532  2333334456888999999999999999999  88999


Q ss_pred             HHHHHHHccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          563 RGTAREALFCYNEALQDFK--HAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|.++++.|++++|.++|+  ++++.+|++.. ...++.++..+|
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g  384 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAG  384 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcC
Confidence            9999999999999999999  68888887766 447788777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.42  E-value=2.2e-06  Score=69.08  Aligned_cols=80  Identities=30%  Similarity=0.363  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +++.+|.++...+++++|+..++++++..|++..+++.+|.++...+++++|++.|+++++..|.+...+..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999988887777766543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.41  E-value=3.1e-06  Score=94.76  Aligned_cols=121  Identities=12%  Similarity=-0.045  Sum_probs=101.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---
Q 007401          481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---  557 (605)
Q Consensus       481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---  557 (605)
                      .....+....+|..+...+...+++++|+..++++++..|+...+|+.+|.++++.+++.++...  +++...+.+.   
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~  100 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA  100 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence            34456778889999999999999999999999999999999999999999998888887776654  5555555444   


Q ss_pred             ----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          558 ----------------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       558 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                                      .+++.+|.||.++|++++|...|+++++++|+|+.+..+++..+..
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                            7999999999999999999999999999999999998888876643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.40  E-value=2.1e-06  Score=79.19  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=77.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       519 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      .+..+..++++|..+...+++++|+.+|++++++.|+.   ..+++++|.++..+|++++|+..|+++++.+|++...+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            34567889999999999999999999999999987653   469999999999999999999999999999999999988


Q ss_pred             HHHHHHHhh
Q 007401          596 AEKRLRKLI  604 (605)
Q Consensus       596 ~~~~~~~~~  604 (605)
                      .++.++..+
T Consensus       111 ~lg~~~~~~  119 (172)
T PRK02603        111 NIAVIYHKR  119 (172)
T ss_pred             HHHHHHHHc
Confidence            888877654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.40  E-value=2.2e-06  Score=89.75  Aligned_cols=116  Identities=12%  Similarity=0.046  Sum_probs=60.8

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+++.+.+...|..+...|+-++|.++...++..++.+.-+|.-+|.++..-.+|++|+++|+.|++++|+|.+.|.-++
T Consensus        37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      ..+.++++|+-....-.+.+++.|.....|...+..
T Consensus       117 lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs  152 (700)
T KOG1156|consen  117 LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA  152 (700)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            555555555555555555555555554444444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.38  E-value=9.4e-06  Score=78.93  Aligned_cols=113  Identities=16%  Similarity=0.190  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....+..+...++-.|++..|+++....+++.|=++..+..++.||...|+...|+.+++.+-++..+|.+.+|..+.++
T Consensus       154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~  233 (504)
T KOG0624|consen  154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL  233 (504)
T ss_pred             HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            34556667777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      +..|+.+.++...+++|+++|++...+-.+..+
T Consensus       234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            999999999999999999999987655444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.37  E-value=1.7e-05  Score=70.82  Aligned_cols=118  Identities=20%  Similarity=0.068  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAY  560 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  560 (605)
                      +.+...+......+..+++.++...+++.++-+|+.   ..+...+|.+++..|++++|+..|++++...|+.   ..+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            345556666777778999999999999999999988   6778889999999999999999999999987654   4589


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++++.++...|++++|+..++.. .-.+-.+.+....+.++...|
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence            99999999999999999999763 333444667777787777654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.36  E-value=1.1e-06  Score=69.26  Aligned_cols=66  Identities=20%  Similarity=0.391  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      ..+..+.++|.++...|+|++|+.+|++++++.       +..+..+.++|.++..+|++++|++++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445666777777777777777777777776541       112455666677777777777777777666654

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.33  E-value=7.6e-06  Score=85.04  Aligned_cols=117  Identities=13%  Similarity=0.010  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------------------------HHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-------------------------------------TYYSNRAA  531 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~la~  531 (605)
                      .+.....+..++..|++++|++.++++++.+|++.                                     ..+..+|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            33444556666666666666666666665555543                                     34456677


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhhC
Q 007401          532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA----ANLAEKRLRKLIG  605 (605)
Q Consensus       532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~g  605 (605)
                      ++...|++++|++.++++++++|+++.++..+|.++.+.|++++|+..+++++...|.+..    .+..++.++...|
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G  200 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence            8888899999999999999999999999999999999999999999999999988775432    3445666665543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.33  E-value=6.4e-06  Score=70.49  Aligned_cols=82  Identities=20%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN---KAANLA  596 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  596 (605)
                      +..++.+|..+...+++++|++.|+++++.+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   5799999999999999999999999999999886   567777


Q ss_pred             HHHHHHhh
Q 007401          597 EKRLRKLI  604 (605)
Q Consensus       597 ~~~~~~~~  604 (605)
                      ++.++..+
T Consensus        82 ~~~~~~~~   89 (119)
T TIGR02795        82 LGMSLQEL   89 (119)
T ss_pred             HHHHHHHh
Confidence            77776654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00540 hemY_coli hemY protein

Probab=98.31  E-value=1.9e-05  Score=83.64  Aligned_cols=107  Identities=12%  Similarity=0.024  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      +.....+...|..+.++|++++|.++|+++.+..|++. .+...++.++++.+++++|.+.+++..+.+|+++.++..++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~  194 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE  194 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            33455666778888889999999999999888888874 46666788888899999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      .++.+.|++++|.+.+++.++....+..
T Consensus       195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       195 EAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999888887554443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.30  E-value=5.5e-06  Score=85.48  Aligned_cols=95  Identities=15%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      ....++..+...++..+|++.++++++..|.+...+...+..+++.++++.|++..++++++.|++...|+.++.+|.++
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHH
Q 007401          571 FCYNEALQDFKHAMV  585 (605)
Q Consensus       571 g~~~~A~~~~~~al~  585 (605)
                      |++++|+..++.+-.
T Consensus       282 ~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  282 GDFENALLALNSCPM  296 (395)
T ss_pred             CCHHHHHHHHhcCcC
Confidence            999999988875543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.29  E-value=3.9e-05  Score=68.54  Aligned_cols=113  Identities=17%  Similarity=0.134  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRGT  565 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~  565 (605)
                      .+..+.+|+.+.+.|++.||...|++++. +.-+++..+..++++.+..+++..|...+++..+.+|.  .+.....+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            56678899999999999999999999986 56788999999999999999999999999999999985  5788999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +|...|++++|...|+.++...|+- .+.......+.
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La  204 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLA  204 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence            9999999999999999999999864 34333344333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.29  E-value=7.5e-06  Score=88.24  Aligned_cols=72  Identities=17%  Similarity=0.051  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK  558 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  558 (605)
                      +..+..+..+|..+...|++++|...|++++.++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            34457788889999999999999999999999999 5899999999999999999999999999999999885

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.28  E-value=9.9e-07  Score=69.61  Aligned_cols=68  Identities=25%  Similarity=0.352  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD----KK---NVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       520 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      |+-+.++.++|.+|..+|+|++|+++|++++++.    ++   -..+++++|.++..+|++++|++++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3446789999999999999999999999999762    12   25689999999999999999999999999863

...

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=6e-06  Score=79.78  Aligned_cols=120  Identities=12%  Similarity=0.027  Sum_probs=108.1

Q ss_pred             CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ..+..|.+.-.+..++.++...+++++|+++|+.+++.+|.|.++....|.-|+.-++.+-|+.+|++.+++.-.+++.+
T Consensus       282 gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf  361 (478)
T KOG1129|consen  282 GLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELF  361 (478)
T ss_pred             hhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQ---NKAANLAEKRL  600 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~  600 (605)
                      +++|.|.+..++++-++.+|++++....+   ...+|++++.+
T Consensus       362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  362 CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence            99999999999999999999999987542   25667766654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=1.3e-05  Score=80.38  Aligned_cols=102  Identities=18%  Similarity=-0.002  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      .+++++.|..+..+|+.++|+++|-+.-.+--+++++++.++.+|-.+.+..+|++.|.++..+-|++|..+..+|.+|-
T Consensus       524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence            34444444444444444444444444443333444444444444444444444444444444444444444444444444


Q ss_pred             HccCHHHHHHHHHHHHHhCCCC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      +.|+..+|.+|+-...+..|-|
T Consensus       604 qegdksqafq~~ydsyryfp~n  625 (840)
T KOG2003|consen  604 QEGDKSQAFQCHYDSYRYFPCN  625 (840)
T ss_pred             cccchhhhhhhhhhcccccCcc
Confidence            4444443333333333333333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.22  E-value=1.5e-05  Score=84.62  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=92.7

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-  553 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  553 (605)
                      ..++.-+..+.++|..|.+.|+|++|..++++++++.        |+-+..+.+++.++..++++++|+..+++++++. 
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999863        3346678899999999999999999999998873 


Q ss_pred             ----CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          554 ----KKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       554 ----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                          +++   +..+.++|.+|+.+|+|++|.+.|++++++.
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                233   5689999999999999999999999999886

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.20  E-value=3.5e-05  Score=79.63  Aligned_cols=105  Identities=12%  Similarity=0.023  Sum_probs=96.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401          498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  577 (605)
                      .+...+++++|++.+++..+.+|+   +...++.++...++..+|++.++++++.+|++...+...+..+...++++.|+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            334567899999999999988765   66678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          578 QDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       578 ~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +..+++.++.|++...|..++.+|..+|
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLG  282 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.19  E-value=2.5e-05  Score=82.37  Aligned_cols=101  Identities=12%  Similarity=0.026  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      +...+...+..+...|+.++|.+.++++++ .+.+......++.+  ..++++++++.+++.++.+|+++..++.+|.++
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~  338 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL  338 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            345555556666666666666666666655 23333333333333  235566666666666666666666666666666


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      ...+++++|.++|+++++.+|++.
T Consensus       339 ~~~~~~~~A~~~le~al~~~P~~~  362 (398)
T PRK10747        339 MKHGEWQEASLAFRAALKQRPDAY  362 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCHH
Confidence            666666666666666666655543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.18  E-value=3.6e-05  Score=72.99  Aligned_cols=121  Identities=18%  Similarity=0.057  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELG-----------CFQQAEEDCSKTI  550 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~-----------~~~~A~~~~~~al  550 (605)
                      .+-..+.++.+|..+++.|+|++|+..|++.++..|++   ..+++.+|.+++.+.           ...+|+..|+..+
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            34556788899999999999999999999999999986   568999999987653           2468999999999


Q ss_pred             hcCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhhC
Q 007401          551 SLDKKNVK-----------------AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA---ANLAEKRLRKLIG  605 (605)
Q Consensus       551 ~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~g  605 (605)
                      +..|++..                 --+..|.-|++.|.|..|+..++.+++..|+...   ++..+...+..+|
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~  192 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG  192 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence            99998732                 2344788899999999999999999999998864   4555555555543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.16  E-value=6.3e-05  Score=79.31  Aligned_cols=107  Identities=10%  Similarity=-0.031  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY-SNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .-.+...+....+.|++++|.++|+++.+.+|++.... ...+..+...|++++|.+.+++..+.+|+++.++..++.+|
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~  197 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY  197 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34455556676999999999999999999999885443 45599999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      .+.|++++|++.+.+..+....+.....
T Consensus       198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        198 IRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999988776654433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.16  E-value=1.1e-05  Score=84.59  Aligned_cols=113  Identities=17%  Similarity=0.138  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      .++....-.+..++|.+.++..++.++..|++.+.+...|..+..+|+-++|....+.+++.|+.+...|..+|.++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++|++|++||+.|++++|+|..++..+..++.+
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q  121 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ  121 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            555555555555555555555555555544443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.15  E-value=2.5e-05  Score=82.05  Aligned_cols=117  Identities=14%  Similarity=0.031  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...|+..++....+++.++|+.+++++++..|++..+|..+|+++.++++.+.|.+.|.+.++..|+.+..|..++.+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            46777888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ..|+.-.|...++++.-.+|++...|...-++..+.|
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g  767 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG  767 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence            9999999999999999999999988877766665543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.13  E-value=1.1e-05  Score=71.52  Aligned_cols=90  Identities=11%  Similarity=-0.000  Sum_probs=82.7

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       516 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      ..+.++.-+..+..|.-+++.|++++|...|+-...+||.|++.|+.+|.|+..+++|++|+..|..+..++++|+...+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            34455667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhC
Q 007401          596 AEKRLRKLIG  605 (605)
Q Consensus       596 ~~~~~~~~~g  605 (605)
                      +.+.|+..+|
T Consensus       110 ~agqC~l~l~  119 (165)
T PRK15331        110 FTGQCQLLMR  119 (165)
T ss_pred             hHHHHHHHhC
Confidence            9999887764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.13  E-value=1.6e-05  Score=84.42  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=91.4

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--  553 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  553 (605)
                      ..|........++..|+.+|+|++|+..+++++..        .|.-......+|..|..+++|.+|+..|++|+.+-  
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34667777888999999999999999999999998        56667777789999999999999999999999872  


Q ss_pred             ---CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          554 ---KKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       554 ---p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                         +++   ..++.++|.+|...|++++|..++++++++.
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence               333   5699999999999999999999999999875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.09  E-value=0.00018  Score=77.26  Aligned_cols=49  Identities=22%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY  533 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  533 (605)
                      ..+....+-.+|..+++.|++++|...|.+.|..+|+|...|..+..+.
T Consensus        34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3455667777888889999999999988888877777655544444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.07  E-value=8.2e-06  Score=65.36  Aligned_cols=61  Identities=20%  Similarity=0.298  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      +...++.+|.++++.|+|++|+..+++ .+.++.+....+.+|.|++++++|++|++.++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566788899999999999999999999 8888888899999999999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.06  E-value=0.00023  Score=69.26  Aligned_cols=153  Identities=12%  Similarity=-0.010  Sum_probs=108.9

Q ss_pred             CchhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHH
Q 007401          451 GDKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATY  525 (605)
Q Consensus       451 ~d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  525 (605)
                      ........+.....  ...++++..+...  ..-+..+-..+..+.+|..+++.++|++|+..|++.++.+|++   ..+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            33444444444333  2344444444332  2223345556778899999999999999999999999998876   678


Q ss_pred             HHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHc
Q 007401          526 YSNRAAAYLELG---------------C---FQQAEEDCSKTISLDKKNVK-----------------AYLRRGTAREAL  570 (605)
Q Consensus       526 ~~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~  570 (605)
                      ++.+|.+++.++               |   ..+|++.+++.++..|+...                 --+..|.-|.+.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~  188 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR  188 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999875554               1   35788999999999998632                 223467778999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhhC
Q 007401          571 FCYNEALQDFKHAMVLEPQNK---AANLAEKRLRKLIG  605 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g  605 (605)
                      |+|.-|+.-++.+++..|+..   +++..+...+..+|
T Consensus       189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg  226 (243)
T PRK10866        189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ  226 (243)
T ss_pred             CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence            999999999999999998764   55566666655443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.06  E-value=0.00011  Score=69.75  Aligned_cols=110  Identities=19%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAY  560 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~  560 (605)
                      ..+..|++.|...++.|+|++|+..|+++....|..   ..+...++.++++.++|++|+...++-+++.|.++   .++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            357899999999999999999999999999988765   57889999999999999999999999999998775   488


Q ss_pred             HHHHHHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          561 LRRGTAREALFC--------YNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       561 ~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      |.+|.+++..=+        ..+|...|++.++..|+...+-..
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA  155 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDA  155 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhH
Confidence            889998765422        567889999999999998654433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.04  E-value=2.4e-05  Score=87.88  Aligned_cols=100  Identities=15%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------------------HHHHHHHHHHHHcCCHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-------------------TYYSNRAAAYLELGCFQQAEED  545 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------~~~~~la~~~~~~~~~~~A~~~  545 (605)
                      .|+....|+.+|..+++.++++++...  .++...+.+.                   .+++.+|.||-++|++++|...
T Consensus        61 ~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~  138 (906)
T PRK14720         61 HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGV  138 (906)
T ss_pred             CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence            566677888888888888877766655  5555544444                   8999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       546 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      |++++++||+|+.++.++|..|... +.++|++++.+|++..
T Consensus       139 yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        139 WERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988 9999999999988763

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.00  E-value=1.6e-05  Score=84.69  Aligned_cols=103  Identities=14%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      ++-..+.|+..|-++.+.++++.|.++|...+.++|++.++|+|++.+|+.+++-.+|...+.+|++.+-++++.|-|.-
T Consensus       515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym  594 (777)
T KOG1128|consen  515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM  594 (777)
T ss_pred             CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence            55667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      .+....|++++|++.|.+.+.+.
T Consensus       595 lvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  595 LVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             hhhhhcccHHHHHHHHHHHHHhh
Confidence            99999999999999999998764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.99  E-value=3.6e-06  Score=82.11  Aligned_cols=98  Identities=29%  Similarity=0.407  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      .....+...+..|.++.|++.|..+|.++|..+..|..++.++++++....|+++|..|++++|+...-|-.++.+...+
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            44555777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCC
Q 007401          571 FCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p  588 (605)
                      |++++|..++..+.+++=
T Consensus       196 g~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDY  213 (377)
T ss_pred             hchHHHHHHHHHHHhccc
Confidence            999999999999999874

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=4.1e-05  Score=76.35  Aligned_cols=81  Identities=20%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ..+++..+.+...|+.+...++.++|+-.|+.++.+.|...+.|..+-.+|+..+.+.+|....+.+++.-|++++++-.
T Consensus       328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL  407 (564)
T KOG1174|consen  328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL  407 (564)
T ss_pred             ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence            34567788888999999999999999999999999999998999888888887777666665444444444444444443


Q ss_pred             H
Q 007401          563 R  563 (605)
Q Consensus       563 l  563 (605)
                      +
T Consensus       408 ~  408 (564)
T KOG1174|consen  408 F  408 (564)
T ss_pred             h
Confidence            3

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.97  E-value=6.9e-06  Score=52.94  Aligned_cols=32  Identities=28%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401          546 CSKTISLDKKNVKAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       546 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  577 (605)
                      |++||+++|+|+.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56677777777777777777777777776664

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.97  E-value=6.5e-05  Score=75.08  Aligned_cols=109  Identities=13%  Similarity=0.089  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       490 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      -.....+++.+..|  ++++|.-.|++..+..+.++..++.++.|++++|+|++|.+.+++++..+|+++.++.+++.+.
T Consensus       166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            33344455555555  6999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             HHccCH-HHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          568 EALFCY-NEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       568 ~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ..+|+. +.+.+++++..+.+|+++.......
T Consensus       246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~  277 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQSNPNHPLVKDLAE  277 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHH
T ss_pred             HHhCCChhHHHHHHHHHHHhCCCChHHHHHHH
Confidence            999998 6677788888889999887665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.97  E-value=0.0001  Score=62.81  Aligned_cols=81  Identities=19%  Similarity=0.071  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ---NKAANLAE  597 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~  597 (605)
                      .+++++|.++-.+|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++.+...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999986544   569999999999999999999999999999898   55565555


Q ss_pred             HHHHHhh
Q 007401          598 KRLRKLI  604 (605)
Q Consensus       598 ~~~~~~~  604 (605)
                      +.++..+
T Consensus        82 Al~L~~~   88 (120)
T PF12688_consen   82 ALALYNL   88 (120)
T ss_pred             HHHHHHC
Confidence            5554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.96  E-value=4.6e-05  Score=68.84  Aligned_cols=91  Identities=26%  Similarity=0.290  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ......|.+.|.++.++++++.|++...++|+++|.+..++..+|.+|-++..|++|+.+|.+.++.+|..-++.-..++
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            45677889999999999999999999999999999999999999999999999999999999999999988777666665


Q ss_pred             HHHHccCHHHH
Q 007401          566 AREALFCYNEA  576 (605)
Q Consensus       566 ~~~~~g~~~~A  576 (605)
                      +--...+..+.
T Consensus       211 l~~~i~ernEk  221 (271)
T KOG4234|consen  211 LPPKINERNEK  221 (271)
T ss_pred             cCHHHHHHHHH
Confidence            54444433333

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=1.7e-05  Score=54.65  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      ++..+|..|..+|++++|++.|+++++.+|+|+.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444444444444444444444444444444444444444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.95  E-value=0.00023  Score=76.41  Aligned_cols=99  Identities=16%  Similarity=0.016  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...++-++..|-..|++++|+++.+++|+..|...+.|+..|.++-..|++.+|.+.++.|-++|..+-......+..++
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhC
Q 007401          569 ALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~  587 (605)
                      +.|+.++|.+.+..-.+.+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999988766544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.94  E-value=2.5e-05  Score=85.54  Aligned_cols=118  Identities=21%  Similarity=0.281  Sum_probs=92.8

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------------------------------------HHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY------------------------------------YSN  528 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------~~~  528 (605)
                      .+..+..|..+|..|...-+...|..+|.+|.++++.+.++                                    |..
T Consensus       488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~  567 (1238)
T KOG1127|consen  488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ  567 (1238)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence            45667888999999988779999999999999998877554                                    344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       529 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +|..|.+.+++.+|+..++.+++.+|++...|.-+|.+|...|+|.-|++.|.++..++|.+....+-.+.+..
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            55555566777778888888888888888888888888888888888888888888888887776665554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=7.9e-05  Score=74.41  Aligned_cols=111  Identities=12%  Similarity=0.024  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+.-|+--+..++..++|..|+.+-+|+|..+|.+..++...|..+.++++.++|+..|+.|+.+-|.....|.-+-.+|
T Consensus       299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY  378 (564)
T KOG1174|consen  299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY  378 (564)
T ss_pred             chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            35567777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ...|++++|...-+.+++.-|++...+..++
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            9999999988888888888888877766654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.90  E-value=3.7e-05  Score=84.34  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      -..|..+|..|.+.+++.+|+..|+.++..+|++..+|..+|.+|...|+|..|++.|.+|..++|.+....|..+....
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            45677799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      .+|+|++|+..+++.++...........++.++.+
T Consensus       642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999988776666666666655443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.90  E-value=0.00015  Score=71.18  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=81.0

Q ss_pred             CchhHHhHHHHH-H--hHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Q 007401          451 GDKFLLDTVLDL-Y--DSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SAT  524 (605)
Q Consensus       451 ~d~~ll~~a~~l-~--~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~  524 (605)
                      .+...+..+..+ .  ....+++..+....  ..-++..-....++.+|..|+..|+|++|+..|+++++..|+   .++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            445555555443 2  23445544443332  122223334578889999999999999999999999998887   488


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      +++.+|.++..+|++++|.+.|+++++..|++..+-
T Consensus       219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999999887543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.00014  Score=72.77  Aligned_cols=117  Identities=16%  Similarity=0.011  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .+.....-.++.+.++++.|.+.++++-+.+.++.-....-+++.+..|  .+.+|...|+......+.++..++.++.|
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~  210 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC  210 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            4555666778999999999999999998887776555555566666655  59999999999888888899999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +..+|+|++|.+.+++++..+|+++....++..+...+|
T Consensus       211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g  249 (290)
T PF04733_consen  211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG  249 (290)
T ss_dssp             HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999998888877665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.85  E-value=0.00018  Score=75.87  Aligned_cols=117  Identities=15%  Similarity=0.050  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------------------------HHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---------------------------------YYSNRAAAYLE  535 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------------------------~~~~la~~~~~  535 (605)
                      -..|...+..++..|+-.+|...+.++++.+|++.+                                 +|+..+.....
T Consensus       584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~  663 (913)
T KOG0495|consen  584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY  663 (913)
T ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence            345666666667777777777777777776666543                                 44555555666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          536 LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       536 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +++.++|++.++++++..|.+.+.|+.+|+++.++++.+.|.+.|...++..|+....|..+.++..+.|
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            7889999999999999999999999999999999999999999999999999999999998888876643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.79  E-value=5.5e-05  Score=52.10  Aligned_cols=43  Identities=26%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      |.+|+.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999999999999988765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.78  E-value=0.00032  Score=59.00  Aligned_cols=80  Identities=26%  Similarity=0.247  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 007401          526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN----KAANLAEKRLR  601 (605)
Q Consensus       526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~  601 (605)
                      +-..|......++.+.|++.|.+++.+.|+++.+|++++.++.-+|+.++|+..+++++++....    ..++.+.+.++
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34567788889999999999999999999999999999999999999999999999999997654    34566666666


Q ss_pred             HhhC
Q 007401          602 KLIG  605 (605)
Q Consensus       602 ~~~g  605 (605)
                      ...|
T Consensus       126 Rl~g  129 (175)
T KOG4555|consen  126 RLLG  129 (175)
T ss_pred             HHhC
Confidence            6554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=4.4e-05  Score=49.27  Aligned_cols=32  Identities=38%  Similarity=0.542  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.77  E-value=2.7e-05  Score=50.19  Aligned_cols=34  Identities=38%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007401          511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE  544 (605)
Q Consensus       511 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  544 (605)
                      +|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999863

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.75  E-value=0.00012  Score=65.61  Aligned_cols=81  Identities=22%  Similarity=0.196  Sum_probs=60.6

Q ss_pred             ChHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 007401          485 SIDASELLKEKGNAAFKG----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-----------FQQAE  543 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A~  543 (605)
                      +|.+++.+.+.|..+...          ..+++|+..|++++.++|+..++++++|.+|..++.           |++|.
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            466788888877777654          346889999999999999999999999999986642           89999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHH
Q 007401          544 EDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       544 ~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ++|++|...+|+|....-.+-.
T Consensus       101 ~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen  101 EYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHH
Confidence            9999999999998755444433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.75  E-value=4.7e-05  Score=49.12  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  555 (605)
                      .+|+++|.+|+.++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45555666666666666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00054  Score=67.25  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE  544 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  544 (605)
                      |.++|+.|+|++|+..|+-+.+-+.-+++.+.+++-|++.+|.|.+|..
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            5666666666666666666655444445555555555554444444443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=0.00014  Score=74.63  Aligned_cols=110  Identities=27%  Similarity=0.237  Sum_probs=99.0

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---GCFQQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~  559 (605)
                      .+.++.++.+++.|+..+..+....|+..|.++++..|+....|.+++.++++.   ++.-.|+.++..|+++||...++
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            345677888889999999999999999999999999999999999999999875   47788999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      |++++.++.+++++.+|+++...+....|.+..
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999999999998877777775543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.72  E-value=5.2e-05  Score=73.85  Aligned_cols=79  Identities=19%  Similarity=0.217  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .-.+|+-|+++|.|++|+.||.+++.++|.|+..+-+++.+|+++++|..|...++.++.++.....++...+.....+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999876666666665554443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.71  E-value=0.00028  Score=64.76  Aligned_cols=72  Identities=18%  Similarity=0.175  Sum_probs=67.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  556 (605)
                      +|..+..++-+|..+...|+|+.|.+.|+..++++|.+--+..|+|..++.-|+|+-|.+++.+-.+.||++
T Consensus        95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785          95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence            467788899999999999999999999999999999999999999999999999999999999988888876

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.71  E-value=0.0013  Score=58.74  Aligned_cols=98  Identities=23%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----------------------ATYYSNRAAAYLELGCFQQAEEDC  546 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~  546 (605)
                      ...+...|......++.+++++.+++++.+....                      ..++..++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3445556777778889999999999999864211                      345667788888999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       547 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      ++++..+|.+-.+|..+..+|...|++.+|++.|+++.+.
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.70  E-value=9.6e-05  Score=47.57  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      ++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            455556666666666666666666666665553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.65  E-value=0.00076  Score=58.66  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=78.5

Q ss_pred             CchhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHH
Q 007401          451 GDKFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATY  525 (605)
Q Consensus       451 ~d~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  525 (605)
                      .+..+...+......  ..++++..+..  ...-+..+-..++...++..+++.++|++|+..|++.|+++|++   ..+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L--~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEAL--DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHH--HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            344555555444433  23333333332  11122233345778889999999999999999999999999887   568


Q ss_pred             HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHHH
Q 007401          526 YSNRAAAYLELGC---------------FQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       526 ~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ++.+|.+++.+.+               ..+|...|++.++..|++..+-
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            9999999999876               8999999999999999987543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.62  E-value=0.00041  Score=69.47  Aligned_cols=104  Identities=22%  Similarity=0.248  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 007401          487 DASELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGT--S----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----  555 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----  555 (605)
                      ..+..+.++|..|... +++++|+++|++|+.+...  .    ..++...|.++.++++|++|++.|++.....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4578899999999999 9999999999999987422  1    467789999999999999999999998875322    


Q ss_pred             --CH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          556 --NV-KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       556 --~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                        +. ..++..+.|++..||+-.|.+.+++....+|..
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence              12 356778889999999999999999999998854

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.61  E-value=0.00014  Score=46.84  Aligned_cols=32  Identities=28%  Similarity=0.432  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  555 (605)
                      .+++.+|.+++.+|+|++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.52  E-value=0.00031  Score=70.33  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--T----SATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDK--KN  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~  556 (605)
                      ...+..|.+.+.++.+. ++++|+++|++++.+.-  .    -+..+..+|.+|... +++++|+++|++|+.+..  +.
T Consensus        72 ~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~  150 (282)
T PF14938_consen   72 FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS  150 (282)
T ss_dssp             HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence            34566777766666555 99999999999998632  1    267889999999988 999999999999998732  22


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                          ...+...|.++.++|+|++|++.|++.....
T Consensus       151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence                3477889999999999999999999998764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.00091  Score=63.21  Aligned_cols=106  Identities=17%  Similarity=0.198  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----N--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  559 (605)
                      +.+......+|...++.||-+.|..++++.-+.    +  ..+-.+..+.+.+|.-.++|.+|...|.+.+..|+.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            456777888999999999999999999955432    2  2346778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      .++.|.|+..+|+..+|++.++.+++..|...
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            99999999999999999999999999999753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.44  E-value=0.00035  Score=69.82  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--CC
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL----DK--KN  556 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p--~~  556 (605)
                      ..++-++|+.|+-.|+|++|+..-+.-+.+..++      -.++.++|.||.-+++|+.|+++|++.+.+    ..  ..
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            3445555555555555555555554444432221      234555555555555555555555554332    11  12


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          557 VKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      ++..|.+|..|.-..++++|+.++++=+++
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0022  Score=67.31  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------
Q 007401          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--------------------  552 (605)
Q Consensus       493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------  552 (605)
                      ++.+-++|+.++.++|+..++   ..++.+...+..+|+.++++++|++|.+.|+..++-                    
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            455555555555555555555   234444445555555555555555555555554332                    


Q ss_pred             ----------CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          553 ----------DKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       553 ----------~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                                .|. ..+.+||.+-++...|+|.+|++.+++++++
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                      233 4568999999999999999999999999443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.39  E-value=0.00052  Score=68.61  Aligned_cols=101  Identities=17%  Similarity=0.108  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK------  554 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------  554 (605)
                      ..-.++.++|+++.-.|+|+.|+++|++.+.+.      ...+...|.+|..|..+.+|++|+.++++-+++-.      
T Consensus       233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri  312 (639)
T KOG1130|consen  233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI  312 (639)
T ss_pred             HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345678899999999999999999999987652      23467789999999999999999999999666532      


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      ....+++.+|.++..+|..++|+.+.++.+++.
T Consensus       313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  313 GELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            346699999999999999999999988887663

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0076  Score=58.52  Aligned_cols=97  Identities=12%  Similarity=0.108  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-------------------------
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC-------------------------  546 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-------------------------  546 (605)
                      -+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+                         
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            3445677788888889999899998888888888888888888888876555433                         


Q ss_pred             ---------HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          547 ---------SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       547 ---------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                               ++.+..||++..+-+.+|..|...|+++.|++.+-..++.+.
T Consensus       217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                     333445789999999999999999999999999988888764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.33  E-value=0.0017  Score=64.14  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----N--  556 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~--  556 (605)
                      .+....+|+.+...+.|+++++.|+++++...++      ..++..+|..|.++.|+++|+-+..+|.++-.+    +  
T Consensus       122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~  201 (518)
T KOG1941|consen  122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS  201 (518)
T ss_pred             chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence            4666778999999999999999999999875443      457889999999999999999999999887432    2  


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                          ..++|.++.++..+|+.-+|+++++++.++.
T Consensus       202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence                2377889999999999999999999987763

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0004  Score=64.73  Aligned_cols=78  Identities=14%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +..-|..++....|..|+.+|.+||.++|..+..|-+++.||++..+++.+.+...++++++|+....++.++.....
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            345577777888999999999999999999999999999999999999999999999999999999998888876543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.28  E-value=0.01  Score=59.60  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .-.|..-+...-+.|+++.|-.++.++-+..+ +.-..+..++......++++.|.....+++++.|.++.+....-.+|
T Consensus       118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y  197 (400)
T COG3071         118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAY  197 (400)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            44455555666666777777777777666633 33455666666666677777777777777777777777777677777


Q ss_pred             HHccCHHHHHHHHHHHHHh
Q 007401          568 EALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~  586 (605)
                      .+.|++.+....+.+.-+-
T Consensus       198 ~~~g~~~~ll~~l~~L~ka  216 (400)
T COG3071         198 IRLGAWQALLAILPKLRKA  216 (400)
T ss_pred             HHhccHHHHHHHHHHHHHc
Confidence            7777777666666655443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.00078  Score=64.70  Aligned_cols=95  Identities=19%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC------
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----DKKN------  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~------  556 (605)
                      +.++...+.|-..++.|+|++|++.|+.+++...-++..-++++.|+++.++|+.|++.....++.    .|+.      
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t  221 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT  221 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence            567888999999999999999999999999999999999999999999999999999988776654    4432      


Q ss_pred             -------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 007401          557 -------------------VKAYLRRGTAREALFCYNEALQDFK  581 (605)
Q Consensus       557 -------------------~~~~~~la~~~~~~g~~~~A~~~~~  581 (605)
                                         .++++..+-++++.++++.|.+.+-
T Consensus       222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                               3477778889999999998887653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0022  Score=63.03  Aligned_cols=87  Identities=15%  Similarity=0.136  Sum_probs=74.4

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 007401          497 NAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE  575 (605)
Q Consensus       497 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  575 (605)
                      ..+....+|..|+..++-....+.+.. ..-.-+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+++.|++.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            345678899999999988877655443 5667789999999999999999999998777788999999999999999999


Q ss_pred             HHHHHHHH
Q 007401          576 ALQDFKHA  583 (605)
Q Consensus       576 A~~~~~~a  583 (605)
                      |...-+++
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98876654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.21  E-value=0.01  Score=55.91  Aligned_cols=103  Identities=26%  Similarity=0.330  Sum_probs=86.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Q 007401          498 AAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-NVKAYLRRGTAREALFCY  573 (605)
Q Consensus       498 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~  573 (605)
                      .+...+++++|+..|++++...|   .....+..++..+...+++++++..+.+++...+. ....+..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            78899999999999999988776   45677777777788889999999999999999998 688999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          574 NEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       574 ~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      ++|...+.+++...|............
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence            999999999999988754444444443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.00096  Score=68.20  Aligned_cols=116  Identities=19%  Similarity=0.120  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c----
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEA-IKLNGT--------SATYYSNRAAAYLELGCFQQAEEDCSKTIS-L----  552 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~----  552 (605)
                      +.+..+....+.++..|+|.+|.+.+... +.-.+.        ...+|+|+|-++++++.|.-+..+|.+|++ .    
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            34567778899999999999999987664 222222        345678999999999999999999999996 1    


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          553 ----DK---------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       553 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                          .|         ...+..|+.|..|...|+...|.+||.++.+..-.|+..|..++++..
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                11         345699999999999999999999999999999999999999888754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.0035  Score=60.37  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      .-.+++++=+|.+++.+|+|++|...|..+++..|++   ++.++.+|.|...+++.++|...|+++++..|+...+...
T Consensus       175 ~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         175 TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            3445667777999999999999999999999988765   7899999999999999999999999999999998876654


Q ss_pred             HH
Q 007401          563 RG  564 (605)
Q Consensus       563 la  564 (605)
                      ..
T Consensus       255 k~  256 (262)
T COG1729         255 KV  256 (262)
T ss_pred             HH
Confidence            43

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.19  E-value=0.007  Score=60.78  Aligned_cols=85  Identities=16%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 007401          501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF  580 (605)
Q Consensus       501 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  580 (605)
                      +-+++..=++..++.++..|+++..+..+|..+++.+.|.+|.++++.|++..| +...|..+|.++.++|+.++|.+++
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence            344555555555555566666666666777777777777777777776666665 3556666666777777777776666


Q ss_pred             HHHHHh
Q 007401          581 KHAMVL  586 (605)
Q Consensus       581 ~~al~~  586 (605)
                      ++++.+
T Consensus       385 ~e~L~~  390 (400)
T COG3071         385 REALLL  390 (400)
T ss_pred             HHHHHH
Confidence            666643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.0016  Score=62.55  Aligned_cols=117  Identities=13%  Similarity=0.081  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------H
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK----------------T  549 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------a  549 (605)
                      +..-..+..+|-+|+..++|.+|..+|++...+.|.........++.+++.+.|..|+.....                |
T Consensus        41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA  120 (459)
T KOG4340|consen   41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA  120 (459)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            444567888999999999999999999999999999988888888888888888777765433                2


Q ss_pred             HhcC--------------C--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          550 ISLD--------------K--KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       550 l~~~--------------p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      |+..              |  +.+....+.|-+.++.|+|+.|++-|+.+++...-++-..+.++.++.
T Consensus       121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy  189 (459)
T KOG4340|consen  121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY  189 (459)
T ss_pred             HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence            2221              2  345677788888899999999999999999988877766666665543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.17  E-value=0.0017  Score=62.70  Aligned_cols=82  Identities=15%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ..++..-.+.+....+.|+.++|...|+.++.++|++++++..+|+..-..++.-+|-.+|-+|+.++|.|.+++.++++
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34455556667788899999999999999999999999999999999988899999999999999999999999998876


Q ss_pred             HH
Q 007401          566 AR  567 (605)
Q Consensus       566 ~~  567 (605)
                      ..
T Consensus       193 T~  194 (472)
T KOG3824|consen  193 TT  194 (472)
T ss_pred             cc
Confidence            53

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.0042  Score=58.87  Aligned_cols=118  Identities=16%  Similarity=0.200  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcC--CCCHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTI----SLD--KKNVKA  559 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~--p~~~~~  559 (605)
                      +.-...+.+..++...+.|.-.+..|++.++.+ |.++.....+|.+.++.||.+.|..++++.-    +++  ..+...
T Consensus       175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence            344566778889999999999999999999988 6788888999999999999999999998543    333  345568


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ..+.+.+|.-.++|.+|...|.+++..||.++.+....+.|+..+
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl  299 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL  299 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence            888999999999999999999999999999998888777766544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.16  E-value=0.0037  Score=51.59  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGC-----------FQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ++..++..|++-+|++..++.+..++++.   ..+...|.+++++..           ...++++|+++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            47789999999999999999999887765   556677888866542           5678999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      +.+|.-+-....|++++.-.+++|...
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999988888888999999999988764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.11  E-value=0.0028  Score=45.16  Aligned_cols=45  Identities=16%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      .+|.+|..++++|+|++|..+++.+|+++|+|.++......+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            467777777788888888888888888888777777666655443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.01  Score=56.58  Aligned_cols=105  Identities=13%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .++.|..++   ...+++++|.-.|++.-+..+-.+..+..++.|++++++|++|...++.++..+++++..+-|+-.+-
T Consensus       175 LA~awv~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  175 LAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            345555544   33457999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHH-HHHHHHHhCCCCHHHHH
Q 007401          568 EALFCYNEALQ-DFKHAMVLEPQNKAANL  595 (605)
Q Consensus       568 ~~~g~~~~A~~-~~~~al~~~p~~~~~~~  595 (605)
                      ..+|.-.++.+ .+.+....+|+++....
T Consensus       252 ~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQLKLSHPEHPFVKH  280 (299)
T ss_pred             HHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence            99998877655 56666677787765543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.06  E-value=0.0011  Score=42.59  Aligned_cols=31  Identities=42%  Similarity=0.590  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      .+|+.+|.+|..+|++++|+++|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555555555555555555555555555

...

>PRK10941 hypothetical protein; Provisional

Probab=97.03  E-value=0.0066  Score=59.58  Aligned_cols=79  Identities=18%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ...+.++=..+.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+++.+-.-+..+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            4666777788888999999999999999999999988889999999999999999999999999998887766655543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.98  E-value=0.0016  Score=41.77  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG  520 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p  520 (605)
                      .|+.+|.++.+.|++++|+++|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344445555555555555555555544444

...

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.95  E-value=0.019  Score=48.88  Aligned_cols=83  Identities=16%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          522 SATYYSNRAAAYLELG---CFQQAEEDCSKTIS-LDKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       522 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      .....+++++++....   +.++.+..++..++ -+|. ..+..|+++..++++++|++++.+++..++.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3566778888887554   46778888888886 4443 34678888999999999999999999999999999888877


Q ss_pred             HHHHHHhh
Q 007401          597 EKRLRKLI  604 (605)
Q Consensus       597 ~~~~~~~~  604 (605)
                      ...+..++
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            77666543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.92  E-value=0.0087  Score=59.74  Aligned_cols=109  Identities=13%  Similarity=0.064  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 007401          487 DASELLKEKGNAAFK-GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLR  562 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  562 (605)
                      ...+.|...|...+. .++.+.|...|+.+++..|.+...|......+...++.+.|...|++++..-+...   ..|..
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~  112 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKK  112 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            345778888888777 56667799999999999999999999999999999999999999999998766544   57777


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      ...--...|+.+...+..+++.+..|++.....
T Consensus       113 ~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  113 FIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            888888889999999999999999888665443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.92  E-value=0.031  Score=52.45  Aligned_cols=103  Identities=28%  Similarity=0.352  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      .....+...+..+...+++++|+..+.+++...+. ....+..++.++...+++.+|+..+.+++...|.....+..++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL  244 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence            45667777777788999999999999999999999 79999999999999999999999999999999988888888999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      .+...++++++...++++++..|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         245 LLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc
Confidence            888888899999999999999986

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.91  E-value=0.0041  Score=65.05  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN  574 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  574 (605)
                      |...-..|+...|+.++..|+...|... -...++|++..+-+-...|...+.+++.++...+-.++.+|..+..+.+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            4334458999999999999999998754 457899999999998999999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          575 EALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       575 ~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .|++.|+.+++++|++......+..+
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999887766554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.0084  Score=63.06  Aligned_cols=108  Identities=17%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ...|+...+++..-.++.+.++|++|+...++=-... .+....+..+.|+++++..++|+.+++   -+++.+......
T Consensus        40 ~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L  115 (652)
T KOG2376|consen   40 SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLEL  115 (652)
T ss_pred             hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHH
Confidence            3346667778888888999999999995433322111 122333799999999999999999998   567777889999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      .|.+++++++|++|+..|+...+.+-++....
T Consensus       116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~  147 (652)
T KOG2376|consen  116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEE  147 (652)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence            99999999999999999999988776665443

>PRK10941 hypothetical protein; Provisional

Probab=96.88  E-value=0.012  Score=57.92  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ..+.++=.+|.+.++++.|+++.++.+.++|+++.-+.-+|.+|.++|++..|...++..++..|+++.+......+..
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            4556788899999999999999999999999999999999999999999999999999999999999887766665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.79  E-value=0.016  Score=60.15  Aligned_cols=115  Identities=11%  Similarity=-0.005  Sum_probs=84.2

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------------C----HHHHHHHHHHHHHcC
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------------------S----ATYYSNRAAAYLELG  537 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------------~----~~~~~~la~~~~~~~  537 (605)
                      .-+++.+.+|..++....  ....+|.++|+++++....                     +    ..+...+|.|..++|
T Consensus       196 ei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG  273 (539)
T PF04184_consen  196 EINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG  273 (539)
T ss_pred             HhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC
Confidence            345667777777765432  3567888888888864110                     0    234567899999999


Q ss_pred             CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 007401          538 CFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFCYNEALQDFKHAMVL-EPQNKAANLAEKR  599 (605)
Q Consensus       538 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~  599 (605)
                      +.++|++.++..++.+|.  +...++++..++..+++|.++...+.+.-++ .|+.....+..+.
T Consensus       274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            999999999999988775  4569999999999999999999999987544 2444544444433

The molecular function of this protein is uncertain.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.78  E-value=0.017  Score=63.56  Aligned_cols=116  Identities=13%  Similarity=-0.017  Sum_probs=99.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|+..-+....|..+++.|++++|..+++..-...+++-..+..+-.||..++++++|..+|++++..+|+ -+..+.+=
T Consensus        39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF  117 (932)
T KOG2053|consen   39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF  117 (932)
T ss_pred             CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence            35555666677999999999999999999888888899999999999999999999999999999999998 88888888


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      .+|.+.++|.+=.+.--+..+..|+++...+....+.
T Consensus       118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli  154 (932)
T KOG2053|consen  118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI  154 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence            8999999998777766667778899887766665543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.78  E-value=0.13  Score=45.82  Aligned_cols=114  Identities=11%  Similarity=-0.171  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .-...+.+......+.++.+++...+...-.+.|+.+..-..-|+.++..+++.+|+..++......|.++.+--.++.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ++.+++..-=.. -++++.. +.++.+......++.
T Consensus        88 L~~~~D~~Wr~~-A~evle~-~~d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   88 LYALGDPSWRRY-ADEVLES-GADPDARALVRALLA  121 (160)
T ss_pred             HHHcCChHHHHH-HHHHHhc-CCChHHHHHHHHHHH
Confidence            999999754322 2234443 346666655555443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.76  E-value=0.088  Score=50.41  Aligned_cols=118  Identities=14%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCC
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC--------FQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p~~  556 (605)
                      .-+....++-.+++.++|++|+...++.+.+.|.+   ..+++.+|.+++..-+        ..+|+..++..++..|++
T Consensus        70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105          70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            35778888999999999999999999999998875   4578888888765422        567888899999999876


Q ss_pred             HH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhhC
Q 007401          557 VK-----------------AYLRRGTAREALFCYNEALQDFKHAMVLEPQNK---AANLAEKRLRKLIG  605 (605)
Q Consensus       557 ~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g  605 (605)
                      ..                 --+..|.-|.+.|.+..|+.-++..++..|+..   .++..+..++..+|
T Consensus       150 ~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg  218 (254)
T COG4105         150 RYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG  218 (254)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence            22                 223367778888999999999999998877654   45555666665554

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.73  E-value=0.043  Score=64.60  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-KKNVKAYLRRGTAR  567 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  567 (605)
                      .|..+...|.+.|++++|++.|++..+.  .|+ ...|..+...|.+.+++++|.+.+++..+.. +-+...|..+..+|
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3444444445555555555555554433  222 3444455555555555555555555555432 12344555555555


Q ss_pred             HHccCHHHHHHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMV  585 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~  585 (605)
                      .+.|++++|.+.|++..+
T Consensus       695 ~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHH
Confidence            555555555555555543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.73  E-value=0.036  Score=46.07  Aligned_cols=93  Identities=18%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC
Q 007401          494 EKGNAAFKGKQWNKAVNYYSEAIKLNGT------------SATYYSNRAAAYLELGCFQQAEEDCSKTISL-------DK  554 (605)
Q Consensus       494 ~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p  554 (605)
                      ..|...++.|.|++|...|.+++...-.            ++-++..++.++..+|+|++++....+++..       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            4456667889999999999999986321            2456778899999999999988877777754       33


Q ss_pred             CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          555 KN----VKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       555 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      +.    ..+.++++.++..+|+.++|++.|+++-++
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            33    457788999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.71  E-value=0.017  Score=63.56  Aligned_cols=103  Identities=14%  Similarity=0.013  Sum_probs=91.3

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401          498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  577 (605)
                      .....+++.+|+....+.++..|+...+....|..+.++|.+++|..+++..-...+++-..+..+-.||..++++++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            44667899999999999999999999999999999999999999998888877788888889999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          578 QDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       578 ~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      .+|+++.+.+|+ .....++-.++
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmay  120 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAY  120 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHH
Confidence            999999999998 65555544443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.68  E-value=0.047  Score=49.82  Aligned_cols=101  Identities=15%  Similarity=0.005  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-NVKAYLRRG  564 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la  564 (605)
                      ......++..++..+++++|+..++.++....+.   +-+-.+++.+.++++.+++|++.+....  ++. .+.....+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhh
Confidence            3456678899999999999999999999754332   3455688999999999999998776532  221 123466799


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      .++...|+.++|...|++++..+++..
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCChH
Confidence            999999999999999999999985443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.66  E-value=0.06  Score=48.64  Aligned_cols=96  Identities=16%  Similarity=0.077  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+...+..+++..+..+++.+|...+++..+.+|.  .++....+|..+...|.+.+|...|+.++...| .+.+..+.+
T Consensus       122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~  200 (251)
T COG4700         122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYA  200 (251)
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHH
Confidence            45778889999999999999999999999998885  467777888889999999999999999999998 577888889


Q ss_pred             HHHHHccCHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHA  583 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~a  583 (605)
                      ..+.++|+.++|...+...
T Consensus       201 e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         201 EMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHhcchhHHHHHHHHH
Confidence            9999999887776655443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.56  E-value=0.016  Score=62.19  Aligned_cols=103  Identities=15%  Similarity=0.026  Sum_probs=83.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-VKA  559 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~  559 (605)
                      .|+.+-.++..|..+..+|+.++|++.|++++....+    ..-.++.++++++.+.+|++|.+++.+..+.+.-+ .-.
T Consensus       263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y  342 (468)
T PF10300_consen  263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY  342 (468)
T ss_pred             CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence            4667788889999999999999999999998854322    34578899999999999999999999998865432 235


Q ss_pred             HHHHHHHHHHccCH-------HHHHHHHHHHHHhC
Q 007401          560 YLRRGTAREALFCY-------NEALQDFKHAMVLE  587 (605)
Q Consensus       560 ~~~la~~~~~~g~~-------~~A~~~~~~al~~~  587 (605)
                      .|..|.|+...++.       ++|.+.|+++-.+.
T Consensus       343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            55578899999999       88888888876554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.55  E-value=0.067  Score=62.98  Aligned_cols=97  Identities=11%  Similarity=-0.003  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-KKNVKAYLRR  563 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  563 (605)
                      ...|..+-..+.+.|++++|.+.|++....    .|+ ...|..+-..|.+.|++++|.+.|++..+.+ +.+...|..+
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL  620 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA  620 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence            344555556666666666666666665432    222 3455555566666666666666666666554 3345566666


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHh
Q 007401          564 GTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      ...|.+.|++++|++.|++..+.
T Consensus       621 I~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        621 VNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Confidence            66666666666666666666554

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.019  Score=60.85  Aligned_cols=98  Identities=19%  Similarity=0.139  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      ..+++.|..+|+.++|..+++.|...+..-|.+      +....+++.||+.+.+.++|.++++.|-+.||+++-.-+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            467788999999999999999999999876654      66788999999999999999999999999999999888888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhC
Q 007401          564 GTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      -.+....++-++|+.+..+.....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            888889999999999988876554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.53  E-value=0.047  Score=64.35  Aligned_cols=100  Identities=12%  Similarity=0.015  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------  555 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------  555 (605)
                      ....+..+|..+...|++++|...+++++.....      ....+.++|.+++..|++++|...+++++.+-..      
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            3455677788888888888888888888765322      1345667788888888888888888888775211      


Q ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          556 --NVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       556 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                        ....+..+|.++...|++++|...+++++.+.
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence              12345567888888888888888888887753

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.074  Score=52.38  Aligned_cols=107  Identities=11%  Similarity=-0.026  Sum_probs=59.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHHHHHcc
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKNV---KAYLRRGTAREALF  571 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~la~~~~~~g  571 (605)
                      +..++..|++.+|-...++.++-.|.+--++..-=.+|+.+|+...-...+++.+-. +++-|   ...-.++.++.+.|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            334455566666666666666666666555555555555566655555555555544 44432   23333455556666


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          572 CYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       572 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      -|++|.+.-++++++++.|..+....+.+++
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle  220 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLE  220 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence            6666666666666666666555555544443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.037  Score=56.89  Aligned_cols=108  Identities=14%  Similarity=0.071  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      -....|...|.--..++++..|-..|++|+..+..+..+|...+.+-++..+...|...+++|+.+-|.--+.||..-..
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      -..+|+..-|.+.|++-++..|+....+
T Consensus       151 EE~LgNi~gaRqiferW~~w~P~eqaW~  178 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEWEPDEQAWL  178 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcCCCcHHHHH
Confidence            9999999999999999999999754433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.048  Score=51.04  Aligned_cols=110  Identities=21%  Similarity=0.192  Sum_probs=82.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC-
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKN-  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~-  556 (605)
                      ..+.+..|...+++ ++..+.++|+.+++++|++..+.      +..+..+|.+|-. +.++++|+.+|+++-...... 
T Consensus        70 khDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee  148 (288)
T KOG1586|consen   70 KHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE  148 (288)
T ss_pred             chhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence            34456666665655 45669999999999999987654      3345578888865 488999999999987654322 


Q ss_pred             -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          557 -----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       557 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                           -+.+...+..-.++++|.+|+..|++..+..-+|.-..+
T Consensus       149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence                 246666777788999999999999999887766655443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.44  E-value=0.03  Score=60.14  Aligned_cols=95  Identities=16%  Similarity=0.058  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHH
Q 007401          502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV----KAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~  577 (605)
                      ..+.+.|.+.+++..+..|+..-.++..|..+...++.++|++.|++++....+..    -.++.++.++..+.+|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            55778899999999999999999999999999999999999999999986444332    37888999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHH
Q 007401          578 QDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       578 ~~~~~al~~~p~~~~~~~~  596 (605)
                      ++|.+..+.+.-....+.+
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y  344 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAY  344 (468)
T ss_pred             HHHHHHHhccccHHHHHHH
Confidence            9999999876443333333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.44  E-value=0.0058  Score=38.65  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      +++++|.++...|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.42  E-value=0.031  Score=63.76  Aligned_cols=96  Identities=7%  Similarity=-0.073  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.++++|++...|..+..+|.
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            345777788888889999998888764 2233 45668888888888899999999999999999988888888999999


Q ss_pred             HccCHHHHHHHHHHHHHh
Q 007401          569 ALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~  586 (605)
                      +.|++++|.+.+++..+.
T Consensus       540 ~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        540 SSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             hCCCHHHHHHHHHHHHHc
Confidence            999999999988877654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.41  E-value=0.023  Score=50.53  Aligned_cols=64  Identities=14%  Similarity=0.118  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      ...+..++..+...|++++|+..+++++..+|.+..++..+-.+|...|++.+|++.|++..+.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            4566677888899999999999999999999999999999999999999999999999887543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.085  Score=50.51  Aligned_cols=115  Identities=13%  Similarity=0.027  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.....-.++.+..+++-|...+++..+++.+  ..+..+|..+..+    +.+..|.-.|+..-...+..+....-++
T Consensus       137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A  214 (299)
T KOG3081|consen  137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA  214 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence            344444566778888888888888888777543  4555566666543    3588999999998876777899999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .|+..+++|++|...++.+|..+++++..+.++--+-..+|
T Consensus       215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG  255 (299)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998888766554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.39  E-value=0.077  Score=52.96  Aligned_cols=101  Identities=14%  Similarity=-0.022  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      .|..+.+...+.+..+.|-..|.++.+..+...++|...|...++ .++.+.|.+.|+++++..|.+...|.....-+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            467777777788889999999999997666778999999999777 5667779999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCH
Q 007401          570 LFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      .++.++|...|++++..-+.+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999998877655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.016  Score=56.94  Aligned_cols=81  Identities=22%  Similarity=0.272  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      +.-|..-|+-|++..+|..|+..|.+.|+..-.    |+..|.|++-|.+.+|+|..|+..+.++++++|.+..++..-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            455666799999999999999999999987543    4668999999999999999999999999999999988777666


Q ss_pred             HHHHh
Q 007401          599 RLRKL  603 (605)
Q Consensus       599 ~~~~~  603 (605)
                      .++..
T Consensus       161 kc~~e  165 (390)
T KOG0551|consen  161 KCLLE  165 (390)
T ss_pred             HHHHH
Confidence            66543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.34  E-value=0.02  Score=40.78  Aligned_cols=43  Identities=16%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      +.++.+|..++++++|.+|.++++.+++++|+|.++......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4567788888888888888888888888888887766554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.30  E-value=0.014  Score=56.62  Aligned_cols=69  Identities=22%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       531 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      .-..+.|+.++|...|+.|++++|.+++++..+|......++.-+|-++|-+++.++|.|..++.+..+
T Consensus       124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            334578899999999999999999999999999999999999999999999999999999998877654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.27  E-value=0.042  Score=57.15  Aligned_cols=109  Identities=14%  Similarity=0.060  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKNVKAYLRRGT  565 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~  565 (605)
                      ...-..+|.++.+.|+.+||++.|++.++..|.  +..+..++-.+++.++.|.++...+.+-=.+ -|+++...|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            445567899999999999999999999987765  5778999999999999999999988885333 2566777777776


Q ss_pred             HHHHc-cC---------------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          566 AREAL-FC---------------YNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       566 ~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      ...+. ++               ...|.+.+.+|++.||+-+..+..+
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~  386 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM  386 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence            55332 22               2457889999999999887665443

The molecular function of this protein is uncertain.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.22  E-value=0.0082  Score=37.93  Aligned_cols=30  Identities=20%  Similarity=0.348  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGT  521 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~  521 (605)
                      ++.+|.++.+.|++++|++.|+++++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444455555555555555555555554443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.22  E-value=0.053  Score=51.51  Aligned_cols=92  Identities=18%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             HHCCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCC------CHHH
Q 007401          500 FKGKQWNKAVNYYSEAIKL----NGT---SATYYSNRAAAYLELGC-------FQQAEEDCSKTISLDKK------NVKA  559 (605)
Q Consensus       500 ~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~p~------~~~~  559 (605)
                      -....+++|++.|.-|+..    ..+   -+..+..+|++|..+++       +.+|.+.|.++++.+..      ....
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3455778888888777643    111   26778889999999888       56677777777766532      2568


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      .|.+|.++.+.|++++|..+|.+.+.......
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            89999999999999999999999998654443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.052  Score=50.83  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q 007401          489 SELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK---  558 (605)
Q Consensus       489 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---  558 (605)
                      +..+..+|..|... .++++|+.+|+++-+.....      -.++..-++.-.++++|.+|++.|++..+-.-+|.-   
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            56677888888765 89999999999998764332      245556677777899999999999998766544432   


Q ss_pred             ----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          559 ----AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       559 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                          .++.-|.|++...+.-.+...+++..+++|....
T Consensus       193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence                5566788898889988899999999999997543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.22  E-value=0.0092  Score=38.87  Aligned_cols=25  Identities=16%  Similarity=0.212  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAM  584 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al  584 (605)
                      |.++|.+|.++|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666633

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.21  E-value=0.0034  Score=64.64  Aligned_cols=86  Identities=21%  Similarity=0.239  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .++.+..+-+.+..+.+.++|..|+.-..++|+++|....+|+.+|.+++.+++|.+|..+|++...+.|+.+++...+-
T Consensus        34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence            45667788888999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHc
Q 007401          565 TAREAL  570 (605)
Q Consensus       565 ~~~~~~  570 (605)
                      .|-...
T Consensus       114 Ec~~~v  119 (476)
T KOG0376|consen  114 ECNKIV  119 (476)
T ss_pred             HHHHHH
Confidence            876544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.20  E-value=0.038  Score=62.97  Aligned_cols=113  Identities=9%  Similarity=-0.054  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ..+..+-..+.+.|+.++|.++|++..+..+  -+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus       427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~  504 (697)
T PLN03081        427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTAC  504 (697)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Confidence            3355555556666666666666666654321  12345666777777777777777776653 2333 456788888888


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ...|+++.|...+++.++++|++...+..+..++...
T Consensus       505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            8888888888888888888888777776666666544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.13  E-value=0.098  Score=48.20  Aligned_cols=101  Identities=18%  Similarity=0.105  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHH---
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--KNVK---  558 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~---  558 (605)
                      +--..+..+|+.|.+.|++++|++.|.++......   -.+.+.++-.+.+..+++.....++.++-.+-.  .++.   
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            44578999999999999999999999998876533   356778888888899999999999999877633  2332   


Q ss_pred             -HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          559 -AYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       559 -~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                       .....|..+...++|.+|.+.|-.+..-.
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence             44557788889999999999887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.07  E-value=0.012  Score=38.23  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAI  516 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al  516 (605)
                      |.++|..+.+.|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666644

>PLN03077 Protein ECB2; Provisional

Probab=96.05  E-value=0.07  Score=62.44  Aligned_cols=103  Identities=10%  Similarity=0.010  Sum_probs=48.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401          499 AFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA  576 (605)
Q Consensus       499 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  576 (605)
                      +.+.|++++|.++|++..+..+  -+...|..+...+.+.|++++|.+.+++. ...| +...|..+-.++..-++.+.+
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHH
Confidence            3444444444444444432111  11234444444455555555555444442 2233 234444444444445555555


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          577 LQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       577 ~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ....+++++++|++...+..+..++..
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~  703 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYAD  703 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence            555555666666666666666555544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.03  E-value=0.089  Score=54.63  Aligned_cols=87  Identities=8%  Similarity=0.036  Sum_probs=44.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCC
Q 007401          510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC-YNEALQDFKHAMVLEP  588 (605)
Q Consensus       510 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p  588 (605)
                      ..|+.+....+.+...|.+......+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...|.++|+.+|
T Consensus        92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np  171 (568)
T KOG2396|consen   92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP  171 (568)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence            344445554555555555554444444445555555555555555555555555554444443 5555555555555555


Q ss_pred             CCHHHHHH
Q 007401          589 QNKAANLA  596 (605)
Q Consensus       589 ~~~~~~~~  596 (605)
                      +++..+..
T Consensus       172 dsp~Lw~e  179 (568)
T KOG2396|consen  172 DSPKLWKE  179 (568)
T ss_pred             CChHHHHH
Confidence            55544443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.075  Score=50.10  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      -.+.++..+++..|+|-++++...+.+..+|.|..+|+.+|.++...=+.++|..++.++++++|.-..+..+
T Consensus       231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr  303 (329)
T KOG0545|consen  231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR  303 (329)
T ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence            4677889999999999999999999999999999999999999999999999999999999999976655444

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.0099  Score=58.92  Aligned_cols=116  Identities=28%  Similarity=0.345  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-----------T--------SATYYSNRAAAYLELGCFQQAEEDCS  547 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~~~~~~A~~~~~  547 (605)
                      ...+...+.|+..++.++|++|..-|.++.....           +        -...+.+.+.+-+..+.+..|+....
T Consensus       220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~  299 (372)
T KOG0546|consen  220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN  299 (372)
T ss_pred             hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence            3445666778899999999999999999876321           1        12356678888899999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       548 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .+++.+++...++|+++..+....++++|++.++.+....|++..+...+....+
T Consensus       300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999888776665543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.98  E-value=0.035  Score=44.70  Aligned_cols=65  Identities=18%  Similarity=0.056  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccC
Q 007401          508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRGTAREALFC  572 (605)
Q Consensus       508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  572 (605)
                      .+..+++.+..+|++..+.+.+|..++..|++++|++.+-..++.++++  -.+.-.+-.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567788888889999999999999999999999999888888888765  2333334444444443

>smart00028 TPR Tetratricopeptide repeats

Probab=95.92  E-value=0.012  Score=36.25  Aligned_cols=30  Identities=37%  Similarity=0.490  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      +|+++|.++..++++++|..+|+++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.92  E-value=0.011  Score=54.97  Aligned_cols=58  Identities=17%  Similarity=0.200  Sum_probs=36.2

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401          499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       499 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  556 (605)
                      ..+.++.+.|.+.|++++.+.|+...-|+.+|....+.|+++.|.+.|++.+++||.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3455666666666666666666666666666666666666666666666666666654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.90  E-value=0.23  Score=57.69  Aligned_cols=105  Identities=11%  Similarity=-0.062  Sum_probs=60.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccC
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFC  572 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~  572 (605)
                      +..+|.+-+++++|.++|+..++...+....|..++..++..++-++|...+.+|++.-|.  +.+..-..|...++.|+
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            3444555555566666666655555555556666666666665556666666666655554  44555555666666666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          573 YNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       573 ~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      -+.+...|+-.+.-+|.-...|..+..
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHH
Confidence            666666666666666655555544443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.89  E-value=0.041  Score=54.70  Aligned_cols=102  Identities=19%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD--  553 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  553 (605)
                      .-+.+.+..+|..+-+.+||++|+-+..++.++..+          ...+++.++..+..+|+.-.|.++++.+.++.  
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            345788999999999999999999999999886432          14577889999999999999999999998773  


Q ss_pred             ----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          554 ----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       554 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                          +-.......+|.+|...|+.+.|..-|+.+....
T Consensus       239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence                2234566779999999999999999999987654

>smart00028 TPR Tetratricopeptide repeats

Probab=95.83  E-value=0.014  Score=35.91  Aligned_cols=31  Identities=35%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  555 (605)
                      .++.+|.+++.++++++|+.+++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666665553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03077 Protein ECB2; Provisional

Probab=95.81  E-value=0.075  Score=62.22  Aligned_cols=96  Identities=10%  Similarity=-0.004  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...|..+...+.+.|++++|.+.+++. ...|+ ...|..+-..+...++.+.+....+++++++|++...|..++.+|.
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence            567889999999999999999999985 34555 5677777777778899999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHh
Q 007401          569 ALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~  586 (605)
                      ..|++++|.+..+...+.
T Consensus       703 ~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        703 DAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HCCChHHHHHHHHHHHHc
Confidence            999999999988877643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.77  E-value=0.19  Score=58.37  Aligned_cols=100  Identities=10%  Similarity=-0.010  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ....|..+|..++++.+-++|...+++|++--|.  +.+....-|+.-++.|+-+.+...|+..+..+|.-.+.|.-+..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            4567777888888888888888888888887776  56666777888888888888888888888888888888888887


Q ss_pred             HHHHccCHHHHHHHHHHHHHhC
Q 007401          566 AREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      .-.+.|+.+.....|++++.+.
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcC
Confidence            7778888888888888887664

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.74  E-value=0.14  Score=60.36  Aligned_cols=99  Identities=13%  Similarity=-0.007  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--N----  556 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----  556 (605)
                      .......++..++..|++++|...+++++...+..     ..++..+|.++...|++++|...+++++.....  +    
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~  530 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA  530 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence            34555668899999999999999999999854442     245678899999999999999999999876332  1    


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          557 VKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      ..++.+++.++...|++++|...+++++++
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            246678899999999999999999999886

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.72  E-value=0.13  Score=41.51  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhh
Q 007401          542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN--KAANLAEKRLRKLI  604 (605)
Q Consensus       542 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~  604 (605)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-..++.++++  ..+...+-.+...+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            3566888899999999999999999999999999999999999888755  45555555554443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.53  E-value=0.11  Score=52.64  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--------CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLN--------GTS----------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV  557 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~--------p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  557 (605)
                      |..++++++|..|..-|..++++.        |..          ..+--.+..||+.+++.+-|+....+.|.++|.++
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            444555555555555555555542        111          23456789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAM  584 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al  584 (605)
                      ..++..|.|+..+.+|.+|...+-.+.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987766554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.45  E-value=0.76  Score=47.19  Aligned_cols=39  Identities=18%  Similarity=0.091  Sum_probs=30.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .++.+..-.|++++|.+.+++++++.|........+..+
T Consensus       310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni  348 (374)
T PF13281_consen  310 TLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI  348 (374)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence            366677778999999999999999988776655555544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.33  E-value=0.81  Score=40.15  Aligned_cols=89  Identities=10%  Similarity=-0.159  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .-...+.+.........+.+++...+...--+.|+.+..-..-|.+++..+++.+|+..++......+..+..--.++.|
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            34566777777778899999999999999899999999999999999999999999999999999888889888899999


Q ss_pred             HHHccCHHH
Q 007401          567 REALFCYNE  575 (605)
Q Consensus       567 ~~~~g~~~~  575 (605)
                      ++.+|+.+-
T Consensus        88 L~al~Dp~W   96 (153)
T TIGR02561        88 LNAKGDAEW   96 (153)
T ss_pred             HHhcCChHH
Confidence            999998654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.23  Score=47.48  Aligned_cols=92  Identities=21%  Similarity=0.148  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401          504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ-QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH  582 (605)
Q Consensus       504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  582 (605)
                      +..+-++++.+.++-+|.|-.+|..+-.+.-.+++.. .-+++.+..+..|.+|-.+|..+-.+....+.|++-+++..+
T Consensus        93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            5677777777777777777777777777777777766 667777777777777777887777777777777777777777


Q ss_pred             HHHhCCCCHHHHH
Q 007401          583 AMVLEPQNKAANL  595 (605)
Q Consensus       583 al~~~p~~~~~~~  595 (605)
                      .++.+--|-.++.
T Consensus       173 Lle~Di~NNSAWN  185 (318)
T KOG0530|consen  173 LLEEDIRNNSAWN  185 (318)
T ss_pred             HHHHhhhccchhh
Confidence            7777655544443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.22  E-value=0.54  Score=44.58  Aligned_cols=104  Identities=19%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD-----KK  555 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~  555 (605)
                      ..+..|..-+..+-..++|++|..++.++++-..+|      +..|-..+.....+..+.++..+|++|..+.     |+
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            345667777777777899999999999999765554      4456666777777888999999999998874     32


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      -+..-.-.+--..+.-+.++|++.|++++.+--++
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            23333334444567778999999999998775443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.19  E-value=0.024  Score=58.38  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      ....|.++|-++++.+.|..+..+|.++++.                  ....-+++||.|..|+..|+.-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            4567889999999999999999999999961                  1124678999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHc
Q 007401          550 ISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       550 l~~~p~~~~~~~~la~~~~~~  570 (605)
                      .+..-.||..|.+++.|....
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999987554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.14  E-value=0.27  Score=50.80  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..+..|...+....++.+...|-..+-.||...|.+ ..+...-..-.++++++.+.+.|++-++-.|.|..+|...|..
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl  480 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL  480 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence            456777777777777888888888888888777775 4444555556677788888888888888888888888888877


Q ss_pred             HHHccCHHHHHHHHHHHHHhC
Q 007401          567 REALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~  587 (605)
                      -..+|+.+.|...|+-|++..
T Consensus       481 E~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  481 ETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHhhhHHHHHHHHHHHhcCc
Confidence            777777777777777776643

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.11  E-value=0.57  Score=49.92  Aligned_cols=117  Identities=17%  Similarity=-0.096  Sum_probs=92.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCHHHH
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS-KTISLDKKNVKAY  560 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~  560 (605)
                      .+.+++..-..+ +...+...++...+.......+..+|+++.++.+++.+....+....+...+. .+....|+|.+..
T Consensus        61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~  139 (620)
T COG3914          61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL  139 (620)
T ss_pred             CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence            344455444444 67777888899899999999999999999999999999988776655555554 4899999998766


Q ss_pred             HHH------HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          561 LRR------GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       561 ~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      ..+      +..+..+++..++...++++.++.|+++.....+..
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            665      888888999999999999999999998766555443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.10  E-value=0.034  Score=51.82  Aligned_cols=62  Identities=18%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      ...+.++.+.+.+.|.+++.+-|++...|+++|....+.|+++.|.+.|++.++++|++...
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            34567889999999999999999999999999999999999999999999999999987543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.10  E-value=0.15  Score=43.59  Aligned_cols=79  Identities=9%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          489 SELLKEKGNAAFKGK---QWNKAVNYYSEAIK-LNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       489 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .+..+++++.+.+..   +-++-+..+++.++ -.|+ .-+..+.++..|+++++|++++++++..++.+|+|.++.-..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            566788888887755   46778899999986 4443 467888999999999999999999999999999999876654


Q ss_pred             HHHH
Q 007401          564 GTAR  567 (605)
Q Consensus       564 a~~~  567 (605)
                      -.+.
T Consensus       112 ~~ie  115 (149)
T KOG3364|consen  112 ETIE  115 (149)
T ss_pred             HHHH
Confidence            4443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.07  E-value=0.54  Score=48.46  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC------
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----TSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DK------  554 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p------  554 (605)
                      ...+..|...+....+.|+++.|...+.++....+    ..+.+.+..+..+...|+..+|+..++..++. ..      
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            34567788888888888888888888888877542    24677778888888888888888888777761 00      


Q ss_pred             ---------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          555 ---------------------------KNVKAYLRRGTAREAL------FCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       555 ---------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                                                 ...++++.+|......      ++.+++.+.|+++.+++|++..++...+..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                       0134666777776666      7888888888889888888888777776655


Q ss_pred             H
Q 007401          602 K  602 (605)
Q Consensus       602 ~  602 (605)
                      .
T Consensus       303 ~  303 (352)
T PF02259_consen  303 D  303 (352)
T ss_pred             H
Confidence            4

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=0.16  Score=50.07  Aligned_cols=106  Identities=14%  Similarity=0.022  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----NVKAYL  561 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~  561 (605)
                      |-.....=.++..+...|-|++|.+.-++++++++.+.++....+.++...+++.++.++..+--..=..    ....|.
T Consensus       172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW  251 (491)
T KOG2610|consen  172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW  251 (491)
T ss_pred             cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence            3334444456777788999999999999999999999999999999999999999999987664322111    123666


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHH--HhCCCCH
Q 007401          562 RRGTAREALFCYNEALQDFKHAM--VLEPQNK  591 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al--~~~p~~~  591 (605)
                      .-+.++.+-++|+.|++.|.+=+  +++.+|.
T Consensus       252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            78899999999999999998765  3344444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.94  E-value=0.1  Score=57.17  Aligned_cols=113  Identities=31%  Similarity=0.420  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLEL--GCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      .+......|+.+++.++|..+..-|..++.+-|.    .+....+++.|++++  ++|.+++..+.-++...|....+++
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            3455666799999999999999999999988774    366778899999875  5899999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .++.+|...++++-|++.+.-....+|.+..+.....++
T Consensus       132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el  170 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL  170 (748)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence            999999999999999999888889999996666644443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.17  Score=49.08  Aligned_cols=78  Identities=26%  Similarity=0.344  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .....++=..+.+.++++.|..+-++.+.++|+++.-+..+|.+|.+++.+..|+++++..++..|+.+.+-..+...
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            445555566677778888888888888888888888888888888888888888888888888888777665555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.81  E-value=1.2  Score=45.22  Aligned_cols=101  Identities=15%  Similarity=0.059  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKL---NGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      +...=......|+++.|++..+.....   .++.     +-.+...+... ...+...|..+..++.++.|+...+-..-
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH
Confidence            333334455666777777666655432   1221     11112222221 12246667777778888888888888888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      +.++++.|+..++-..++.+.+.+|+-..+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia  299 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPHPDIA  299 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence            999999999999999999999999865443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.70  E-value=1.9  Score=43.01  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh----CC---CC-------HHHHHHHHHHHHHcCCH---HHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKL----NG---TS-------ATYYSNRAAAYLELGCF---QQAEEDCS  547 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p---~~-------~~~~~~la~~~~~~~~~---~~A~~~~~  547 (605)
                      ...++.+++.|...++.+ +|++|..++++++++    ..   ..       ..++..++.+|++.+.+   .+|.+.++
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            456899999999999999 999999999999887    22   11       45677889999888775   45566666


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       548 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      .+..-.|+.+..++..-.++.+.++.+.+.+.+.+++..-+
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            66666788787775555566568899999999998887654

It is also involved in sporulation [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.65  E-value=0.035  Score=54.94  Aligned_cols=74  Identities=26%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  555 (605)
                      +..++..+..|...+.++.+.++...|+..|..++.++|+.+.-|-.++.++..++++.+|..++..+.+++-+
T Consensus       141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999864

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=0.22  Score=48.19  Aligned_cols=78  Identities=22%  Similarity=0.242  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      ....++=..+...++++.|..+.++.+.++|+++.-+.-+|.+|.++|.++-|++.++..++..|+++.+......+.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            344566667788899999999999999999999999999999999999999999999999999999988766665543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.33  E-value=1.2  Score=44.62  Aligned_cols=107  Identities=25%  Similarity=0.102  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCC
Q 007401          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELG-------CFQQAEEDCSKTISLDKK  555 (605)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~  555 (605)
                      .....+.+|..+..    ..++.+|..+|+++.+..... ....+.++.+|..-.       +..+|...|.++-...  
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--  185 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--  185 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence            35677778888877    559999999999999875444 355888888887641       2347999999988776  


Q ss_pred             CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          556 NVKAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       556 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ++.+.+++|.+|..    ..++++|..+|+++-+...  ......++
T Consensus       186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            78899999988855    4589999999999998765  55555555

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.99  E-value=1  Score=46.29  Aligned_cols=102  Identities=11%  Similarity=0.026  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLE---LGCFQQAEEDCSK-TISLDKKNVKAY  560 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~  560 (605)
                      .+...++=..|-..++|+.-++..+..-.+    .++...+.+.+|.++-.   .|+.++|++.+.. ..+.++.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            455566666788899999999998887666    45667888888888888   8899999999999 455667889999


Q ss_pred             HHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCC
Q 007401          561 LRRGTAREAL---------FCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       561 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~  590 (605)
                      ..+|.+|...         ...++|+.+|.++++++|+.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            9999998543         34789999999999999654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.90  E-value=0.51  Score=44.72  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCC-
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTI----SLDK-  554 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al----~~~p-  554 (605)
                      ++.+..-...+--..+.-+.++|+..|++++.+-.++      .+.+...+..+..++.|.+|...+.+-.    +.+. 
T Consensus       107 pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y  186 (308)
T KOG1585|consen  107 PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY  186 (308)
T ss_pred             cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence            4445455556666777888999999999998764332      4566667788888899999887776633    3332 


Q ss_pred             -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          555 -KNVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       555 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                       ..-+.+...-.+|+...+|.+|..+|+...++.
T Consensus       187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence             233456666677788889999999999877653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.67  E-value=1.2  Score=46.10  Aligned_cols=96  Identities=15%  Similarity=0.047  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------------------------------------------
Q 007401          486 IDASELLKEKGNAAFKGKQ-WNKAVNYYSEAIKLNGTS------------------------------------------  522 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------------------------------------------  522 (605)
                      ...+..+..-|..+.+.|+ -++|++.++.+++..+.+                                          
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            4557777888888888887 667888877777654443                                          


Q ss_pred             ----HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401          523 ----ATYYSNR--AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH  582 (605)
Q Consensus       523 ----~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  582 (605)
                          .+.-+.+  |+.++..|+|.++.-+..-..+++| ++.++..+|.|+....+|++|-.++..
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence                2223333  3335678999999999999999999 899999999999999999999998875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.48  E-value=0.17  Score=49.34  Aligned_cols=80  Identities=10%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN-RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ...+++...|...+....+.+.|.+--..|.++++.+|.|.+.|.. -+.-+...++++.+...+.++++++|++|..|+
T Consensus       101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            4456777888888888888889999999999999999999999876 455566778899999999999999999988776


Q ss_pred             H
Q 007401          562 R  562 (605)
Q Consensus       562 ~  562 (605)
                      .
T Consensus       181 e  181 (435)
T COG5191         181 E  181 (435)
T ss_pred             H
Confidence            5

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.42  E-value=0.95  Score=49.88  Aligned_cols=101  Identities=20%  Similarity=0.139  Sum_probs=60.6

Q ss_pred             HHHHHHHHC----C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          494 EKGNAAFKG----K-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       494 ~~g~~~~~~----g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      .+|.+|.+.    . +++.|+.+|.++.++  .++.+.+.+|.+|..-.   ++.+|.++|..|.+.  .+..+.++++.
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~  368 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLAL  368 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence            345555552    2 566677777776655  34566667777776544   456777777776655  35667777777


Q ss_pred             HHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          566 AREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       566 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      ||..    .-+.+.|..++.++-+.+  ++.+...+..+
T Consensus       369 ~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  369 CYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence            6632    235677777777776655  44444444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.35  E-value=1.3  Score=39.63  Aligned_cols=82  Identities=16%  Similarity=-0.034  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ..+.....+-...++.+++...+...--+.|+.+..-..-|..+...|++.+|+..|+....-.|..+.....+..|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44556666677788999999999988899999999999999999999999999999999999899999888888888766


Q ss_pred             hC
Q 007401          604 IG  605 (605)
Q Consensus       604 ~g  605 (605)
                      +|
T Consensus        91 ~~   92 (160)
T PF09613_consen   91 LG   92 (160)
T ss_pred             cC
Confidence            53

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.24  E-value=0.92  Score=46.38  Aligned_cols=100  Identities=18%  Similarity=0.121  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----HHHHH
Q 007401          504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC----YNEAL  577 (605)
Q Consensus       504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~  577 (605)
                      ..++-+.+.+.+++.+|+...+|+.+.+++.+...  +..=++.++++++.||.|..+|.++=.++.+...    ..+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            67788889999999999999999999999987764  7888999999999999999999887777655443    46667


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          578 QDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       578 ~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++..+++.-++.|..++.+...++..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHH
Confidence            78888888899999998888777653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.23  E-value=0.21  Score=33.16  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~  518 (605)
                      ..+.++|..|...|+|++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            44566666666666666666666666654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.18  E-value=2.2  Score=43.54  Aligned_cols=103  Identities=8%  Similarity=-0.039  Sum_probs=79.7

Q ss_pred             CChHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401          484 GSIDASELLKEKGNAAFKGKQ------------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  551 (605)
                      .+|.+.+.|..+....-..-.            .+.-+..|++|++.+|++..++..+-.+..+..+-++..+-+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356667777776655443322            56778899999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHh
Q 007401          552 LDKKNVKAYLRRGTAREA---LFCYNEALQDFKHAMVL  586 (605)
Q Consensus       552 ~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~  586 (605)
                      .+|++...|..+-.....   .-.+.+....|.++++.
T Consensus        94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~  131 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA  131 (321)
T ss_pred             HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            999999888765543322   33577888888877765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.91  E-value=1.2  Score=49.28  Aligned_cols=102  Identities=15%  Similarity=0.040  Sum_probs=78.4

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------hCC----------CCHHHHHHHHHHHHHcCCHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK----------LNG----------TSATYYSNRAAAYLELGCFQQAE  543 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------~~p----------~~~~~~~~la~~~~~~~~~~~A~  543 (605)
                      +....-..|++.+..+...++.+.|+++|+|+-.          -+|          .+...|.--|+.+-..|+.+.|+
T Consensus       853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl  932 (1416)
T KOG3617|consen  853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL  932 (1416)
T ss_pred             cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence            3444556789999999999999999999998631          122          34556666788888889999999


Q ss_pred             HHHHHHHhc---------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401          544 EDCSKTISL---------------------DKKNVKAYLRRGTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       544 ~~~~~al~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  585 (605)
                      .+|..|-..                     ...+-.+.|.+|+-|...|++.+|+..|.+|-.
T Consensus       933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            988776432                     245667899999999999999999988877643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.89  E-value=2  Score=43.79  Aligned_cols=92  Identities=7%  Similarity=-0.015  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401          509 VNYYSEAIKLNGTSATYYSNRAAAYLELGC------------FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA  576 (605)
Q Consensus       509 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  576 (605)
                      ...|++.++-+|++...|..+....-..-.            .+.-+..|++|++.+|++...+..+-.+..+.-+-++.
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            345888899999999999998876544432            45678899999999999999999988899999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          577 LQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       577 ~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .+.+++++..+|++...|..+-..
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999988777665543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.82  E-value=0.42  Score=50.66  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      -+.++++.+.+.+...+|-..+.+++.+....+-.++.+|..|+.+.+.++|++.+++|++++|+++..-..+-.
T Consensus       644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            356789999999989999999999999998889999999999999999999999999999999999876555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.82  E-value=0.23  Score=32.97  Aligned_cols=29  Identities=24%  Similarity=0.331  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      .++.++|.+|...|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34455555555555555555555555543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.58  E-value=0.57  Score=38.06  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=32.1

Q ss_pred             HHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          499 AFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       499 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      ..+.++|.+|++.+.+.......         ...++.++|.++...|++++|++.+++++++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45667777777776666654221         1234555666666666666666666666654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.31  E-value=2  Score=47.39  Aligned_cols=95  Identities=21%  Similarity=0.056  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          489 SELLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       489 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      .+..+.+|.+++...   ++.+|.++|..|.+.  .+..+.+.++.||..-    .+...|..++.++-+.+  ++.+.+
T Consensus       325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~  400 (552)
T KOG1550|consen  325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAY  400 (552)
T ss_pred             chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHH
Confidence            455666777776544   577888888888664  4567888888888643    35788888888888876  566666


Q ss_pred             HHHHHHHHc-cCHHHHHHHHHHHHHhC
Q 007401          562 RRGTAREAL-FCYNEALQDFKHAMVLE  587 (605)
Q Consensus       562 ~la~~~~~~-g~~~~A~~~~~~al~~~  587 (605)
                      .++..+..- ++++.+...+.....+.
T Consensus       401 ~~~~~~~~g~~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  401 LLGAFYEYGVGRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHhh
Confidence            666665443 67777666655555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.24  E-value=0.84  Score=47.73  Aligned_cols=75  Identities=9%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      +...|.+.....-+.+.|.+--..|.+++..+|+++++|..-|...+..+. .+.|...+.++++.+|+++..|..
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            467788877777777779999999999999999999999999999988876 899999999999999999987754

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.21  E-value=1.5  Score=42.09  Aligned_cols=122  Identities=12%  Similarity=0.051  Sum_probs=101.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWN-KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ..+++..-+.|.-.-.+....|++. +-++..++++..+..|-.+|..+-++....+.|+.-+++..+.++.|-.|-.+|
T Consensus       105 ~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  105 IEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             HHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            4456677788888888888888888 889999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHccC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          561 LRRGTAREALFC------YNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       561 ~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ..+-.+......      .+.-+.+..+.+.+.|+|..++.++..++..
T Consensus       185 N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  185 NQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             heeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            887666554322      3445677888899999999999999988764

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.17  E-value=1.9  Score=44.31  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC-C--------------------------------CHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NG-T--------------------------------SATYYSNRAAAY  533 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~la~~~  533 (605)
                      .....++.+..+...|+-.+|+..+++.++. .. .                                .+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999988871 11 0                                134566666666


Q ss_pred             HHc------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHHhCCC
Q 007401          534 LEL------GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC-----------------YNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       534 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~  589 (605)
                      ...      ++++++++.|+++++++|++.++|+..|..+...=+                 ...|+.+|-+++.+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            666      778999999999999999999999999988755422                 14488899999998877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.06  E-value=3  Score=45.08  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----------  555 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----------  555 (605)
                      ..|...|..|...|+.++|-..|+++.+..-    +-+.+|.+-|..-+...+++.|++..++|...-.+          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            4455555555555555555555555554321    11444555554444555555555555554433211          


Q ss_pred             --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          556 --------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       556 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                              +...|..++......|-++.....|++.+++.--.++...+.+.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                    12344444544555555555555555555554444444433333

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.81  E-value=0.26  Score=32.40  Aligned_cols=28  Identities=32%  Similarity=0.364  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          525 YYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      +|..+|.+.+..++|++|+++|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4445555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.77  E-value=1.3  Score=51.11  Aligned_cols=102  Identities=18%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELG-------CFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .-+.+...+.|++|+..|++.-...|.-   -++.+..|...+.+-       .+.+|+.-|++. .-.|.-|--|.-.|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            3456677888999999999988877654   466677777776542       366666666653 33455677788888


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      .+|.++|+|++-+++|..+++..|+.+..-...
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR  592 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence            899999999999999999999988887654433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.59  E-value=2.3  Score=43.96  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=47.6

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCC---HHHHHHHHHH
Q 007401          516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--------------------------KKN---VKAYLRRGTA  566 (605)
Q Consensus       516 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~---~~~~~~la~~  566 (605)
                      ++.+|-+.+.+..++.++.+.|+++.|.+.+++|+-.-                          ++|   ..+.++....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            34566667777777777777777766666666654220                          111   1255556666


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC-CHH
Q 007401          567 REALFCYNEALQDFKHAMVLEPQ-NKA  592 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~-~~~  592 (605)
                      +.+.|.+.-|+++++-.+.++|. |+.
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence            66777777777777777777776 543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.20  E-value=1  Score=36.58  Aligned_cols=56  Identities=23%  Similarity=0.271  Sum_probs=45.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC----CC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          533 YLELGCFQQAEEDCSKTISLDK----KN-----VKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       533 ~~~~~~~~~A~~~~~~al~~~p----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ....++|.+|++.+.+.+....    ..     ..+..++|.++...|++++|++.+++++++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4578999999888888776532    12     45788899999999999999999999998854

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.18  E-value=0.34  Score=47.39  Aligned_cols=87  Identities=8%  Similarity=0.028  Sum_probs=60.9

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          513 SEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR-RGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       513 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      .++-...++++..|...+....+.+-|.+--..|.++++.+|.|.+.|.. .+.-++..++++.+...|+++++++|+++
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            33444566777777777766666777777777777777777777777766 55566777777777777777777777777


Q ss_pred             HHHHHHHH
Q 007401          592 AANLAEKR  599 (605)
Q Consensus       592 ~~~~~~~~  599 (605)
                      ..|...-+
T Consensus       177 ~iw~eyfr  184 (435)
T COG5191         177 RIWIEYFR  184 (435)
T ss_pred             hHHHHHHH
Confidence            66655444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.95  E-value=2.5  Score=40.20  Aligned_cols=79  Identities=18%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401          487 DASELLKEKGNAAFKGKQ-------WNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  553 (605)
                      ..+..+..+|+.|-..++       +.+|++.|++++....      +...+.+.+|.+++.+|++++|.+.|.+.+...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            567888889999988888       4556666666655432      236788999999999999999999999999765


Q ss_pred             CCCH-HHHHHHHH
Q 007401          554 KKNV-KAYLRRGT  565 (605)
Q Consensus       554 p~~~-~~~~~la~  565 (605)
                      ..+. ..+..+|.
T Consensus       196 ~~s~~~~l~~~AR  208 (214)
T PF09986_consen  196 KASKEPKLKDMAR  208 (214)
T ss_pred             CCCCcHHHHHHHH
Confidence            4332 34444444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.69  E-value=0.9  Score=29.46  Aligned_cols=31  Identities=13%  Similarity=0.283  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHH--HHHHHHhCCC
Q 007401          491 LLKEKGNAAFKGKQWNKAVNY--YSEAIKLNGT  521 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~  521 (605)
                      .|+.+|-.+..+|+|++|++.  |.-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            445555555666666666666  3355544443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.64  E-value=3.9  Score=40.29  Aligned_cols=62  Identities=21%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  585 (605)
                      .++..++..+...++++.+++.+++.+.++|.+-.+|..+-..|...|+...|+..|++.-+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555544443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.46  E-value=0.48  Score=31.15  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      +.|..+|.+....++|++|++.|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.42  E-value=0.99  Score=29.27  Aligned_cols=31  Identities=13%  Similarity=-0.006  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q 007401          559 AYLRRGTAREALFCYNEALQD--FKHAMVLEPQ  589 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~  589 (605)
                      .++.+|..+..+|++++|+..  |+-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            344455555555555555555  2244444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.30  E-value=2.9  Score=43.40  Aligned_cols=61  Identities=18%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  548 (605)
                      ++......-|..++.+|+|.++.-+-.-..+..| ++.+|..+|.|.+...+|.+|..++..
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3455556668889999999999999999999999 899999999999999999999998854

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.20  E-value=1.6  Score=42.91  Aligned_cols=65  Identities=15%  Similarity=0.088  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      ....+..++..+...++++.+++.+++.+..+|.+-..|..+-..|++.|+...|+..|++..++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999999999999998775

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.09  E-value=1.7  Score=39.98  Aligned_cols=69  Identities=14%  Similarity=0.058  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV  557 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  557 (605)
                      ..-.-..++.+.+.+|++++|+..++..-.- .-.+...-.+|+++..+|+-++|...|.++++.+++.+
T Consensus       125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         125 KALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            3445567899999999999999987764331 11234456799999999999999999999999986543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=89.77  E-value=4.4  Score=43.89  Aligned_cols=100  Identities=18%  Similarity=0.103  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHH---HHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--KNVK---AYLRR  563 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~---~~~~l  563 (605)
                      ...|..+++.....|-++.....|++.+.+.--.+..-.|.|..+.....|+++.+.|++.+.+.+  +-.+   .|+..
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk  556 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK  556 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence            345556666666666666667777777776666666666777666666666777777777666653  2222   23333


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ....+.-.+.+.|...|++|++..|
T Consensus       557 fi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  557 FIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            3333444456667777777776665

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.30  E-value=8  Score=38.49  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC------
Q 007401          499 AFKGKQWNKAVNYYSEAIKLN----GTS----ATYYSNRAAAYLELG-CFQQAEEDCSKTISL----DK---KN------  556 (605)
Q Consensus       499 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~------  556 (605)
                      ..++|+++.|..+|.|+-...    |+.    +..+++.|...+..+ ++++|...+++++++    ..   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999986544    332    567888899999999 999999999999887    21   11      


Q ss_pred             -HHHHHHHHHHHHHccCHHH---HHHHHHHHHHhCCCCHHHH
Q 007401          557 -VKAYLRRGTAREALFCYNE---ALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       557 -~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~  594 (605)
                       ...+..++.+|...+.++.   |...++.+-...|+.+...
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             3367778999998887654   4444444545557666555

It is also involved in sporulation [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.15  E-value=3.5  Score=42.14  Aligned_cols=95  Identities=21%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C----CCH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLD----K----KNV  557 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~~  557 (605)
                      -.++..+|..|..-|+++.|++.|.++-....+   ....+.+.-.+-..+++|.....+..+|.+.-    .    -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            467889999999999999999999996554433   35677788888888999999888888887762    1    124


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHA  583 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~a  583 (605)
                      +..+..|.+.+.+++|+.|.++|-.+
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            57888899999999999999988655

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.68  E-value=1.5  Score=43.39  Aligned_cols=62  Identities=19%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      |..+|.+|+.+.|++...|+.+|.++...++.-+|+-+|-+++....-++.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997765578899999988877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.67  E-value=6.4  Score=40.14  Aligned_cols=96  Identities=13%  Similarity=0.002  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .-.+...+...+-.|+|++|-+.|+..+. +|+.- --+..+-.-...+|+++.|..+..++..+-|.-+-++...-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            34455557777788899988888887765 44421 11122222224578888888888888888888887877777778


Q ss_pred             HHccCHHHHHHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMV  585 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~  585 (605)
                      ...|+++.|++..+...+
T Consensus       199 ~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         199 CAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HhcCChHHHHHHHHHHHH
Confidence            888888888887776544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.61  E-value=4.5  Score=31.30  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS---NRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~  548 (605)
                      +....+.|.-++.+.+.++|+...+++++..++..+.+.   .+..+|...|+|.+.+++..+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677777777777777777777776666554443   334455666666666655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.30  E-value=12  Score=38.72  Aligned_cols=110  Identities=10%  Similarity=-0.091  Sum_probs=84.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC----
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-SATYYSNRAA-AYLELGCFQQAEEDCSKTISLDKK----  555 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~----  555 (605)
                      ..++...-.+++.....+.++|-+.-|+++.+-.+.++|. ++..-...-+ ..++.++|+--++.++........    
T Consensus        96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~  175 (360)
T PF04910_consen   96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS  175 (360)
T ss_pred             cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence            3445566678888888999999999999999999999998 6654444444 445667888778777776553221    


Q ss_pred             -CHHHHHHHHHHHHHccCH---------------HHHHHHHHHHHHhCCCCH
Q 007401          556 -NVKAYLRRGTAREALFCY---------------NEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       556 -~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~  591 (605)
                       -|..-|..+.+++.+++.               ++|.+.+++|+...|.-.
T Consensus       176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence             245778899999999998               899999999999887543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.28  E-value=4.9  Score=43.12  Aligned_cols=102  Identities=18%  Similarity=0.015  Sum_probs=81.1

Q ss_pred             HHCCCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401          500 FKGKQWNK-AVNYYSEAIKLNGTSATYYSN--RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA  576 (605)
Q Consensus       500 ~~~g~~~~-A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  576 (605)
                      +..++.+. ++..|...+.+++.++..+..  +...+...++...+....+.+++.+|++..++.+++.++...|....+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            33444444 777788788889999887544  477777888888899999999999999999999999999888887777


Q ss_pred             HHHHHH-HHHhCCCCHHHHHHHHHHH
Q 007401          577 LQDFKH-AMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       577 ~~~~~~-al~~~p~~~~~~~~~~~~~  601 (605)
                      ...+.. +....|++.......-.++
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~~~~~  146 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHLIRFY  146 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhHHHHH
Confidence            666655 8999999998887774333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=88.28  E-value=10  Score=32.02  Aligned_cols=66  Identities=12%  Similarity=0.029  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~  552 (605)
                      -++..+..++..+...|+|++++..-++++..       +.+.    ..+-++++..+..+|+.++|+..|+.+-++
T Consensus        53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            45667778889999999999999888888753       4444    334578999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.13  E-value=14  Score=36.93  Aligned_cols=97  Identities=23%  Similarity=0.146  Sum_probs=73.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-----
Q 007401          502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKN-VKAYLRRGTAREALF-----  571 (605)
Q Consensus       502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-----  571 (605)
                      .+++.+|+++|+.+  ....++.+.+++|..|..    ..++.+|..+|++|.+..... ..+.++++.+|..-.     
T Consensus        90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~  167 (292)
T COG0790          90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV  167 (292)
T ss_pred             cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence            44688999999954  445778899999999987    458999999999999886443 344888888886641     


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          572 --CYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       572 --~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                        +.++|...|.++-...  +..+...++.++.
T Consensus       168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~  198 (292)
T COG0790         168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYE  198 (292)
T ss_pred             cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence              3347999999888765  6677777766553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.11  E-value=6.1  Score=34.77  Aligned_cols=80  Identities=11%  Similarity=-0.117  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +..........++.+++...+...--+-|+.+..-..-|..+...|++.+|+..|+....-.+..+.....+..|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            34444555568899999998888888999999999999999999999999999999998877777888777777776553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.71  E-value=11  Score=39.50  Aligned_cols=98  Identities=17%  Similarity=0.098  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-S--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------  556 (605)
                      ..++..+.+|.....-+.|++|...|..+.+.-.. +  +.+-.++|..|+..++-+.-   |+-.-.+.|.|       
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~---y~~ld~i~p~nt~s~ssq  441 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL---YKALDLIGPLNTNSLSSQ  441 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH---HHHHHhcCCCCCCcchHH
Confidence            45788899999999999999999999999986433 3  33446789999887764432   22222344442       


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                         ..++|..|.-.+.++++.+|...+.+.++..
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence               3478889999999999999999999999986

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.58  E-value=1.6  Score=43.25  Aligned_cols=62  Identities=16%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       542 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      |..+|.+|+.+.|++...|+++|.++...|+.=+|+.+|-+++...--.+.+..++..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997765557777777766554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.47  E-value=16  Score=33.05  Aligned_cols=108  Identities=10%  Similarity=-0.058  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--TS--ATYYSNRAAAYLELGCFQQAEEDCSKTI-SLDKKNVKAYLRR  563 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~--~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l  563 (605)
                      .-..+..|....++|+-.+|+..|.++-.-.+  .-  -.+...-+.++...+-|++...-.+..- ..+|--..+.-.+
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            45667789999999999999999999866432  21  2334455667777888988766554422 2234344577779


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      |.+-++.|++.+|.+.|++... +.+.+....+.
T Consensus       174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqR  206 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR  206 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence            9999999999999999998776 43334333333

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.37  E-value=3.6  Score=44.45  Aligned_cols=76  Identities=12%  Similarity=-0.004  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      .++.+-|.-+++..+|..+++.|...++--|.      +.+...++..||..+.+.++|++++++|-+.+|.++.....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            56677888889999999999999999887654      366888899999999999999999999999999987665554


Q ss_pred             HH
Q 007401          598 KR  599 (605)
Q Consensus       598 ~~  599 (605)
                      -.
T Consensus       435 ~~  436 (872)
T KOG4814|consen  435 LQ  436 (872)
T ss_pred             HH
Confidence            33

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=87.32  E-value=19  Score=38.98  Aligned_cols=115  Identities=9%  Similarity=-0.036  Sum_probs=98.4

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKNVKAYL  561 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~  561 (605)
                      +..+.+...|....+.-...|+++.....|++++-......+.|...+......|+..-|-..+.++.+. .+.-+..+.
T Consensus       291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L  370 (577)
T KOG1258|consen  291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL  370 (577)
T ss_pred             cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence            3455677889988999999999999999999999988899999999999999999999888888887776 466788888


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      ..+..-...|++..|...+++...-.|+...+-...
T Consensus       371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~  406 (577)
T KOG1258|consen  371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRK  406 (577)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHH
Confidence            888888999999999999999998888776554333

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.29  E-value=4.7  Score=31.24  Aligned_cols=58  Identities=14%  Similarity=-0.041  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHccCHHHHHHHHHHH
Q 007401          526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL---RRGTAREALFCYNEALQDFKHA  583 (605)
Q Consensus       526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~a  583 (605)
                      ....|.-++..++.++|+..++++++..++.+.-+.   .+..+|...|+|++.+++--+=
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677889999999999999999887766444   4566789999999988765443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.11  E-value=0.8  Score=27.13  Aligned_cols=23  Identities=26%  Similarity=-0.050  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHH
Q 007401          559 AYLRRGTAREALFCYNEALQDFK  581 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~  581 (605)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.98  E-value=8.2  Score=40.36  Aligned_cols=95  Identities=16%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401          497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA  576 (605)
Q Consensus       497 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  576 (605)
                      ...+..|+...|-.....++...|..+..-..++.+...+|+|+++..++.-+-..--.-.++...+-..++.++++++|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            34467889988988888899999999888888899999999999998887766554333344555555566677777777


Q ss_pred             HHHHHHHHHhCCCCH
Q 007401          577 LQDFKHAMVLEPQNK  591 (605)
Q Consensus       577 ~~~~~~al~~~p~~~  591 (605)
                      ...-+..+.-+-+++
T Consensus       377 ~s~a~~~l~~eie~~  391 (831)
T PRK15180        377 LSTAEMMLSNEIEDE  391 (831)
T ss_pred             HHHHHHHhccccCCh
Confidence            666655554443333

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.45  E-value=37  Score=38.08  Aligned_cols=109  Identities=16%  Similarity=0.062  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 007401          486 IDASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLNGT--SA----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---  555 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---  555 (605)
                      ..++.....+|..++ ...++++|..+++|++.+...  ..    .+.+.++.++.+.+... |...++++++.-.+   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            457899999999998 689999999999999887643  22    23456688888877777 99999999987544   


Q ss_pred             -CHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhC--CCCHHHHH
Q 007401          556 -NVKAYLRRGT--AREALFCYNEALQDFKHAMVLE--PQNKAANL  595 (605)
Q Consensus       556 -~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  595 (605)
                       .+...+++-.  .+...+++..|++.++......  .++.....
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v  179 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV  179 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence             3333333332  2223379999999999988876  35554433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=86.33  E-value=4.7  Score=44.01  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ...-+++.++|..+.....+++|.++|.+.-.        ..++..|++.+++|.+    ++.....-|++.+.+-.+|.
T Consensus       793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~  860 (1189)
T KOG2041|consen  793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMAD  860 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHH
Confidence            44568899999999999999999999987533        3477888888888876    44444555777777778888


Q ss_pred             HHHHccCHHHHHHHHHH
Q 007401          566 AREALFCYNEALQDFKH  582 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~  582 (605)
                      .+...|--++|.++|-+
T Consensus       861 mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  861 MFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHhhchHHHHHHHHHh
Confidence            88888888888777644

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.57  E-value=9.7  Score=43.03  Aligned_cols=100  Identities=15%  Similarity=0.042  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--  556 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  556 (605)
                      ........++.+..+.+|.+|.....++...-+.         .+.....+|.+....+++++|++..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            4556677899999999999999998888765433         24566678888899999999999999999887765  


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                         ..++...|.+..-.|++++|..+.+.+.+..
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence               3477889999999999999999999888874

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.36  E-value=2.8  Score=43.65  Aligned_cols=101  Identities=15%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      ......+.+....|+|+++...+..+-+.-..-.....-+-...+.++++++|.......+.-+-+.++..---+....+
T Consensus       324 ~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~  403 (831)
T PRK15180        324 VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADA  403 (831)
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHH
Confidence            33445577888899999999887766554444445555555666788999999988888877777778877777777788


Q ss_pred             ccCHHHHHHHHHHHHHhCCCC
Q 007401          570 LFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~  590 (605)
                      +|-++++.-.+++.+.++|..
T Consensus       404 l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        404 LQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HhHHHHHHHHHHHHhccCChh
Confidence            888999999999999988753

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.15  E-value=9.3  Score=35.11  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      -.++..+|..|.+.|++++|++.|.++.......   ...++++-.+....+++......+.++-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4688899999999999999999999988765432   4588889999999999999999999987663

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.03  E-value=15  Score=38.59  Aligned_cols=95  Identities=15%  Similarity=-0.007  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH
Q 007401          487 DASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLN---GTS----ATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNV  557 (605)
Q Consensus       487 ~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~  557 (605)
                      -++....++|..++ ...+.+.|...++++..+.   |++    .+++..++++|.+.. .+..+...+++++++..+++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            45777788888775 4789999999999998764   333    456778999999888 78899999999999987766


Q ss_pred             H----HHHHHHHHHHHccCHHHHHHHHH
Q 007401          558 K----AYLRRGTAREALFCYNEALQDFK  581 (605)
Q Consensus       558 ~----~~~~la~~~~~~g~~~~A~~~~~  581 (605)
                      .    ..+.++..+.-..++..|.+.+.
T Consensus       124 ~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  124 YWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            3    66778999999999999988854

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=84.58  E-value=5.9  Score=32.96  Aligned_cols=71  Identities=20%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 007401          529 RAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLRRGTAREALFC-----------YNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       529 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      ++.-++..|++-+|++..+..+..+.++.   ..+...|.++.++..           ...++++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999999887665   566667777755543           4558999999999999887776


Q ss_pred             HHHHH
Q 007401          595 LAEKR  599 (605)
Q Consensus       595 ~~~~~  599 (605)
                      ..++.
T Consensus        82 ~~la~   86 (111)
T PF04781_consen   82 FELAS   86 (111)
T ss_pred             HHHHH
Confidence            66654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.58  E-value=1.3  Score=26.22  Aligned_cols=22  Identities=27%  Similarity=0.019  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q 007401          525 YYSNRAAAYLELGCFQQAEEDC  546 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~  546 (605)
                      +.+++|..+...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555554444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=84.26  E-value=9.4  Score=40.66  Aligned_cols=95  Identities=12%  Similarity=-0.023  Sum_probs=71.9

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401          480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       480 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  559 (605)
                      .....+|.+...|+.+-..+..+ .+++.-+.|++.+...|..+.+|.......+..++|+...+.|.+++..-- |.+.
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDL   88 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDL   88 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhH
Confidence            34567888889999887776655 999999999999999999999999999999999999999999999886433 2444


Q ss_pred             HHH-HHHHHHHccCHHHH
Q 007401          560 YLR-RGTAREALFCYNEA  576 (605)
Q Consensus       560 ~~~-la~~~~~~g~~~~A  576 (605)
                      |-. +-.+....++...+
T Consensus        89 W~lYl~YVR~~~~~~~~~  106 (656)
T KOG1914|consen   89 WKLYLSYVRETKGKLFGY  106 (656)
T ss_pred             HHHHHHHHHHHccCcchH
Confidence            432 34444445554443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.88  E-value=23  Score=36.57  Aligned_cols=108  Identities=16%  Similarity=0.100  Sum_probs=83.1

Q ss_pred             HHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          495 KGNAAFKGKQW-NKAVNYYSEAIKLNGTSATYYSNRAAAYLELG------------CFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       495 ~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      .-....+.|.| +++++.=.+.+..+|+...+|+.+=.++....            -.++-+.....+++.+|+...+|+
T Consensus        34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~  113 (421)
T KOG0529|consen   34 IIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWH  113 (421)
T ss_pred             HHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHH
Confidence            33344456666 45777777788889999888887665554322            256667788899999999999999


Q ss_pred             HHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          562 RRGTAREALFC--YNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       562 ~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .+..++.+.+.  +..=++.++++++.+|.|-.++.+...+..
T Consensus       114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~  156 (421)
T KOG0529|consen  114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE  156 (421)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence            99999987765  578889999999999999888877766544

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=83.58  E-value=14  Score=38.03  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC--CCH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-----G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISL--DK--KNV  557 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p--~~~  557 (605)
                      .+..|+-+...+...++...=-..+...+...     . ..+...+.+=.+|+..+.|++|.+...+..--  +.  +.+
T Consensus       168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A  247 (493)
T KOG2581|consen  168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA  247 (493)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence            46677777888888888666666665555432     1 12455666778888888999999988886522  22  335


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      ..+|++|.+..-+.+|..|.+++-+|+...|++
T Consensus       248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            678889999999999999999999999999974

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=83.49  E-value=17  Score=36.22  Aligned_cols=100  Identities=11%  Similarity=-0.024  Sum_probs=52.5

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------CCHHH--HHHHHHHHHHcCCH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-----------------------TSATY--YSNRAAAYLELGCF  539 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~~~~--~~~la~~~~~~~~~  539 (605)
                      +++.+.+|..++..-.  .-..+|.+.++++++...                       .+...  -..++.|..++|+.
T Consensus       214 N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrl  291 (556)
T KOG3807|consen  214 NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRL  291 (556)
T ss_pred             CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhH
Confidence            4556666666554332  245566777777765310                       11112  23456666666666


Q ss_pred             HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          540 QQAEEDCSKTISLDKKN--VKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       540 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      .+|++.++-..+-.|-.  ...+-++-.++.++.-|.+....+.++-++
T Consensus       292 rEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi  340 (556)
T KOG3807|consen  292 REAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI  340 (556)
T ss_pred             HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            66666666655555422  124455555666665555555555544433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.88  E-value=14  Score=34.51  Aligned_cols=73  Identities=12%  Similarity=0.015  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 007401          504 QWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----NVKAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       504 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~  577 (605)
                      .=++|...|-++-... =++++..+.+|..|. ..+.++++..+.+++++...    |++.+..++.++.+++++++|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3355666655543321 256888888887765 67888999999999987532    5889999999999999998874

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.26  E-value=6.2  Score=26.89  Aligned_cols=25  Identities=12%  Similarity=-0.045  Sum_probs=18.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~  585 (605)
                      +.+|.+|..+|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4577777777777777777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.11  E-value=7.6  Score=29.91  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~  518 (605)
                      +.+..+...|..+-+.|++++|+.+|+++++.
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            45667778888888899999988888887753

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=82.00  E-value=0.97  Score=45.27  Aligned_cols=82  Identities=18%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF  571 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  571 (605)
                      ..+.+.+.++.+++..|+..-..++..+++...+++.+++.++.+.++++|++++..+....|++....-.+...-....
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            34467788889999999998888888888999999999999999999999999999999999998876666655554444


Q ss_pred             CH
Q 007401          572 CY  573 (605)
Q Consensus       572 ~~  573 (605)
                      ++
T Consensus       358 ~~  359 (372)
T KOG0546|consen  358 QY  359 (372)
T ss_pred             HH
Confidence            43

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=81.96  E-value=13  Score=39.62  Aligned_cols=75  Identities=12%  Similarity=0.019  Sum_probs=67.7

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          513 SEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       513 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ++-|+.+|.+.+.|+.+-.-+... -+++..+.|++.+...|..+.+|-.........++|+.-.+.|.++|...=
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL   84 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL   84 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            667889999999999998877555 899999999999999999999999999999999999999999999986543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=81.87  E-value=9.3  Score=42.72  Aligned_cols=63  Identities=19%  Similarity=0.064  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKT----------ISLDK----------KNVKAYLRRGTAREALFCYNEALQDFKH  582 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~  582 (605)
                      -..|++.|.-+...++.+.|+++|+++          ++-+|          .+...|--.|..+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            346788888888888999999999874          22233          2344666678888889999999988887


Q ss_pred             HHH
Q 007401          583 AMV  585 (605)
Q Consensus       583 al~  585 (605)
                      |-.
T Consensus       938 A~D  940 (1416)
T KOG3617|consen  938 AKD  940 (1416)
T ss_pred             hhh
Confidence            754

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=81.83  E-value=15  Score=46.08  Aligned_cols=115  Identities=15%  Similarity=0.045  Sum_probs=91.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--------  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------  556 (605)
                      +..-++.|.+.|...-+.|+++.|..+.-+|.+..  -+.++..+|....+.|+-..|+..+++.+..+-.+        
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            45668999999999999999999999999988876  67899999999999999999999999999664222        


Q ss_pred             ---------HHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          557 ---------VKAYLRRGTAREALFCY--NEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       557 ---------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                               ..+.+..+.-..+.+++  ++-++.|..+.++.|++..-+++++.-+
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence                     22455555666666664  4457789999999998877777666433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.15  E-value=5.6  Score=39.17  Aligned_cols=54  Identities=17%  Similarity=0.015  Sum_probs=47.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 007401          529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH  582 (605)
Q Consensus       529 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  582 (605)
                      -+.-....+++.+|...+..++..+|++..+...++.||...|+.+.|...+..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344455789999999999999999999999999999999999999988877764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.14  E-value=6.1  Score=38.73  Aligned_cols=57  Identities=19%  Similarity=0.142  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  548 (605)
                      +...+..|...|.+.+|+.+.++++.++|-+...+..+-..+..+|+--.+++.|++
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            334455556666666666666666666666666666666666666665555555544

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.89  E-value=11  Score=39.03  Aligned_cols=96  Identities=21%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH-----------HHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEA-----------IKLNGTSATYYSNRAAAYLELGC----------FQQAEEDCSKT  549 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~a-----------l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a  549 (605)
                      .+++.|..+++...|++|+.++-.|           ++.-.+++..-..+-+||+.+.+          ...|.+.|.++
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3445566666666666666655444           34445566666778899988875          22333333332


Q ss_pred             --------HhcC-CCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          550 --------ISLD-KKNVK------AYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       550 --------l~~~-p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                              ..+. +..++      .++..|...+++|+-++|.++++.+...
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~  296 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK  296 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                    1111 22332      5556788999999999999999988643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	605
2dc0_A	434	Crystal Structure Of Amidase Length = 434		1e-23
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		5e-19
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		6e-19
1wao_1	477	Pp5 Structure Length = 477		1e-18
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		1e-18
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		1e-18
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		2e-17
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		9e-17
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		1e-16
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-14
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-14
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		3e-14
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		1e-13
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		2e-13
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-13
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		5e-13
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		8e-13
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		8e-13
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		5e-12
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		7e-12
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		7e-12
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		7e-12
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		9e-12
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		3e-11
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		3e-11
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-11
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		1e-10
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		1e-10
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		5e-10
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		7e-10
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		7e-10
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		2e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-09
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		6e-09
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		6e-09
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-08
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-08
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-08
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		5e-08
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		6e-08
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		9e-08
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-07
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		2e-07
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-07
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		6e-07
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		8e-07
3a2q_A	493	Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas		8e-07
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		1e-06
3a2p_A	493	Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas		1e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-05
2wap_A	543	3d-Crystal Structure Of Humanized-Rat Fatty Acid Am		2e-04
2wj1_A	573	3d-Crystal Structure Of Humanized-Rat Fatty Acid Am		3e-04
2vya_A	587	Crystal Structure Of Fatty Acid Amide Hydrolase Con		3e-04
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		4e-04
4hbp_A	550	Crystal Structure Of Faah In Complex With Inhibitor		8e-04

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 159/388 (40%), Gaps = 33/388 (8%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L GL   +KD+F VKG  T  G+   K         A  V  L + GA    KT   E A
Sbjct: 65  LHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIA 121
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            GITGEN   G   N   PS                 +   +LGTDT G +R+PA F G+
Sbjct: 122 LGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGV 181
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
           +G++PS+G VS+ G LP S+S D  G L R+     R  H L +            I A 
Sbjct: 182 VGFKPSYGRVSLEGALPLSRSTDHAGPLTRSV----RDAHFLTE------------ILAG 225
Query: 253 DIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGT 312
           +   L  V       V    ++ L G    E       +  ++P+L+    + + P    
Sbjct: 226 ESIPLEGVQN----PVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP---- 277
Query: 313 ATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRN 372
             L+ +  V   L RYE   I+E+ +K         V E +L  +  T+ + +     R 
Sbjct: 278 --LEGVYEVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAERE 335
Query: 373 EMRAALQRLLKDDKILVIPT--VSDPPLKLNTKKTYSAEFHDRT--LVLSSIGSMSGCCQ 428
            +R  L + L+    L++P   +  PPL     +  S     R   + L+   S+ G   
Sbjct: 336 ALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPT 395
Query: 429 VAIPIGKYNEHPISISFITYHGGDKFLL 456
           +A+P  K    P+ +  +  +G D  +L
Sbjct: 396 LALPFAKVEGXPVGLQVVGAYGEDGKVL 423

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 165/410 (40%), Gaps = 40/410 (9%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  A+KD   V+G  T   S     ++  A   A V+  L K GA  +GKT LDEFA
Sbjct: 64  LFGIPIAVKDNILVEGEKTTCASK--ILENFVAPYDATVIERLKKAGALIVGKTNLDEFA 121
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            G + E   +    NP     +P                  +LG+DT G +R PASFCG+
Sbjct: 122 MGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGV 181
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRAR------ 246
           +G +P++G VS  G++  + SLD +G+  R    +  V  V+   +  +   A+      
Sbjct: 182 IGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEW 241
Query: 247 -----------RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQ----YI 291
                      ++    + F+    P++K      +A E+       E   + +    ++
Sbjct: 242 SEEVKKEVKGLKIGLPKEFFEYELQPQVK------EAFENFIKELEKEGFEIKEVSLPHV 295
Query: 292 ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFE 351
             ++P+   +     +P   ++ L     V    +  E+K I+E + ++     G  V  
Sbjct: 296 KYSIPTYYII-----APSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKR 350
Query: 352 RVLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY 406
           R++             Y     KVR  +     +  ++  ++  PT    P K   +   
Sbjct: 351 RIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLEN 410
Query: 407 SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLL 456
             E +  + +L+   +++G   ++IPI   +  P+    I  H  +  LL
Sbjct: 411 PIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLL 459

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 170/422 (40%), Gaps = 61/422 (14%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           LAGL  A+KD    +G  T  GS   +      E TAV     L  GA  +GKT LDEF 
Sbjct: 58  LAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKAL--GALVLGKTNLDEFG 115
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            G + E+  +    NP  P  +P              L   ALG+DT G VR PA+FCG+
Sbjct: 116 MGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGV 175
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
            G +P++G VS  G++  + SLD +G +AR+   L      LL   A  P          
Sbjct: 176 YGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL-----ALLMDAAAGPDPL------- 223
Query: 253 DIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMN-VGQYIASNVPSLK------------ 299
           D   L   P+ +         E+L G   P  +  V + +A N P ++            
Sbjct: 224 DATSLDLPPRFQ---------EALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRE 274
Query: 300 -GLRAQSTSPENGTATLKAL-----SSVMLSLQRYEFKTIY---------EEWVKSAKPR 344
            GL  +  S  +    L A      +    +L RY+  T+Y         E  +++ +  
Sbjct: 275 LGLSVREVSWPSLPQALAAYYILAPAEASSNLARYD-GTLYGRRAAGEEVEGMMEATRAL 333
Query: 345 LGYNVFERVLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLK 399
            G  V  RVL             Y       R  ++A  Q L ++  +L++PT   P   
Sbjct: 334 FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFP 393
Query: 400 LNTKKTYSAEFHDRTLVLSSIGS-MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDT 458
              ++   A + +    L ++G+ ++G   ++ P G     P+ +  +   G D+ LL  
Sbjct: 394 FGARRDPLAMYRED---LYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRA 450
Query: 459 VL 460
            L
Sbjct: 451 AL 452

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 73/121 (60%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
           G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+  A 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
            D ++ I LDKK +K Y RR  +  AL  +  AL+D++  + ++P +K A +  +   K+
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120
Query: 604 I 604
           +
Sbjct: 121 V 121

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P  +G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+
Sbjct: 4   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
             A  D ++ I LDKK +K Y RR  +  AL  +  AL+D++  + ++P +K A +  + 
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
Query: 600 LRKLI 604
             K++
Sbjct: 124 CNKIV 128

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+ FA+KD  DV G       P +    +E +R A VV  L   GA  +GKT LD+FA
Sbjct: 95  LYGVPFAVKDNIDVAGLPCSAACPAFT---YEPDRDATVVARLRAAGAIVLGKTNLDQFA 151
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            G+ G    +G P       +I               LV F+LGTDT G  RVPA+F  +
Sbjct: 152 TGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNL 211
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 225
           +G +P+ G +S  GV+P  +SLD V + A + +
Sbjct: 212 VGVKPTKGLLSTSGVVPACRSLDCVTVFAASVA 244

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 179/428 (41%), Gaps = 30/428 (7%)
Query: 75  GLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG 134
           G+  AIKD     G  T   S     +++E+   A VV  + + G   +GK  LDEFA G
Sbjct: 60  GIPVAIKDNILTLGMRTTCASRIL--ENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 117
Query: 135 ITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILG 194
            + E   +    NP     +P              +V  ALG+DT G VR PAS CG++G
Sbjct: 118 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVG 177
Query: 195 YRPSHGTVSMIGVLPNSQSLDTVGLL---ARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           Y+P++G VS  G++  + SLD +G +    R+A+IL  +     + +A      R++ F 
Sbjct: 178 YKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVN--RKVDFL 235
Query: 252 DDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST---- 306
            +I + +S +       +    IE     +  E + + + + + V  +K    + +    
Sbjct: 236 SEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATY 295
Query: 307 ---SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDN 363
              +P   ++ L     V   L R + K + E ++K+     G  V  R++    T    
Sbjct: 296 YVIAPAEASSNLARFDGVKYGL-RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354
Query: 364 IKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKL-NTKKTYSAEFHDRTLVL 417
               Y     KVR ++   L  +L     ++ PT      K+   K   +    D   + 
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMD---IF 411
Query: 418 SSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-L 476
           +   +++G   +++P G  N  P+ +  I    G +F    V  +  ++++      N +
Sbjct: 412 TIPANLAGLPAISVPFGFSNNLPVGVQVI----GRRFADGKVFRIARAIEKNSPYNENGM 467
Query: 477 VPLPDTNG 484
            PLP+   
Sbjct: 468 FPLPEVKA 475

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 149/370 (40%), Gaps = 50/370 (13%)
Query: 109 AVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXX 168
           + V+  L K  A  IGK  +DEFA G + E  ++   VNP     +P             
Sbjct: 105 STVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAA 164
Query: 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR----NA 224
            LV  +LG+DT G +R PA++CG++G +P++G VS  G++  + SLD +G L R    NA
Sbjct: 165 GLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNA 224
Query: 225 SILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEH 284
            +L  +    +  +   P         DD+   S+         I K I+ L      E+
Sbjct: 225 IVLEAISGADVNDSTSAP--------VDDVDFTSE---------IGKDIKGLKVALPKEY 267
Query: 285 M------NVGQYIASNVPSLKGLRA--QSTSPEN---------------GTATLKALSSV 321
           +      +V + + + V +LK L A  +  S  N                ++ L     +
Sbjct: 268 LGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGI 327
Query: 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILY-----KVRNEMRA 376
                  E  ++ E +  S     G  V  R+              Y     KVR  ++ 
Sbjct: 328 RYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN 387
Query: 377 ALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY 436
              ++ ++  ++V PT       L  +       +   L+ + + +++G   +++P G+ 
Sbjct: 388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPV-NLAGLPGISVPCGQS 446
Query: 437 NEHPISISFI 446
           N  PI + FI
Sbjct: 447 NGRPIGLQFI 456

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 5/129 (3%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
           PL     S +A E LK +GN   K + +  AV++Y +AI+LN  +A Y+ NRAAAY +LG
Sbjct: 2   PLGSEEDSAEA-ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG 60
Query: 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA--ANL 595
            +  A +DC + I +D    KAY R G A  +L  + EA+  +K A+ L+P N+   +NL
Sbjct: 61  NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 596 --AEKRLRK 602
             AE +LR+
Sbjct: 121 KIAELKLRE 129

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + ++K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            + I L+   +K Y R+  A EA+  Y +A+  ++ A+ L+   K A
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 172/425 (40%), Gaps = 28/425 (6%)
Query: 75  GLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG 134
           G+  AIKD     G  T   S     +++E+   A VV    + G   +GK  LDEFA G
Sbjct: 61  GIPVAIKDNILTLGXRTTCASRIL--ENYESVFDATVVKKXKEAGFVVVGKANLDEFAXG 118
Query: 135 ITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILG 194
            + E   +    NP     +P               V  ALG+DT G VR PAS CG++G
Sbjct: 119 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVG 178
Query: 195 YRPSHGTVSMIGVLPNSQSLDTVGLL---ARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           Y+P++G VS  G++  + SLD +G +    R+A+IL  +     + +A      R++ F 
Sbjct: 179 YKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATTVN--RKVDFL 236
Query: 252 DDIFQLSKVPKLKTIHVISK-AIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST---- 306
            +I +     K      I +  IE     +  E + + + + + V  +K    + +    
Sbjct: 237 SEIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATY 296
Query: 307 ---SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDN 363
              +P   ++ L     V   L R + K + E + K+     G  V  R+     T    
Sbjct: 297 YVIAPAEASSNLARFDGVKYGL-RIKEKGLREXYXKTRNVGFGEEVRRRIXIGTFTLSAA 355
Query: 364 IKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
               Y     KVR ++   L  +L     ++ PT      K+   K     +      + 
Sbjct: 356 YYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIP 415
Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-LV 477
           +  +++G   +++P G  N  P+ +  I    G +F    V  +  ++++      N   
Sbjct: 416 A--NLAGLPAISVPFGFSNNLPVGVQVI----GRRFADGKVFRIARAIEKNSPYNENGXF 469
Query: 478 PLPDT 482
           PLP+ 
Sbjct: 470 PLPEV 474

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G + AIKD   V G     GS     +     R A VVT LL  GAT  GK V ++  
Sbjct: 88  LTGRRVAIKDNVTVAGVPMMNGS--RTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F  +      G   NP                      VDFA+G D  G +R+PA+FCG+
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGV 205
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
           +G++P+ G V   G  P  +++D +G + R       +  V+   +  +PR+A  +   D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G + AIKD   V G     GS     +     R A VVT LL  GAT  GK V ++  
Sbjct: 88  LTGRRVAIKDNVTVAGVPMMNGS--RTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F  +      G   NP                      VDFA+G D  G +R+PA+FCG+
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGV 205
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
           +G++P+ G V   G  P  +++D +G + R       +  V+   +  +PR+A  +   D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 63/107 (58%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +++E  K  GNA +K   + KA+ YY +A++L+  +A+ + N   AY + G +Q+A E  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            K + LD  N KA+ RRG A      Y +A++D++ A+ L+P N  A
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           K KGN  FK   +  A+ +Y+EA+K +  +A  YSNRAA   +L  FQ+A +DC   I L
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           D K +K Y+R+     A+  +++A + ++ A+ ++P N+ A
Sbjct: 77  DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYL 534
           P P T G+    +L KE GN  FK   +  A+  Y++A+ L+ T    A  + NRAA +L
Sbjct: 18  PRPATPGASSVEQLRKE-GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL 76
Query: 535 ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591
           +L  + +AE + SK I  D  +VKA  RR  A E L   ++A+ D +  + LEP+NK
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 60/104 (57%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591
           + + LD ++VKA+   G  +  +  Y+EA+ + + A  L  + +
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALG  T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   I D+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIADIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 60/104 (57%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK 591
           + + LD ++VKA+   G  +  +  Y+EA+ + + A  L  + +
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGS-------PDWKRDHHEAERTAVVVTLLLKNGATCIGK 125
           L G+   +KD  +     T  GS       PD           A +V  L   GA  +GK
Sbjct: 78  LHGIPLLLKDNINAAPMATSAGSLALQGFRPD----------DAYLVRRLRDAGAVVLGK 127
Query: 126 TVLDEFA-----FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTI 180
           T L E+A       I+G +   G   NP   SH P              L   A+GT+T 
Sbjct: 128 TNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETD 187
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 225
           G +  PA+  G++G +P+ G VS  G++P S S DT G +AR+ +
Sbjct: 188 GSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVA 232

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 55/99 (55%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LKEKGN A      + A+  YSEAIKL+  +   YSNR+AAY + G +Q+A ED  KT+ 
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
           L     K Y R+  A E L  + EA + ++  +  E  N
Sbjct: 67  LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LK +GN  F  K +N+A+ YY  AI+L+     +YSN +A Y+  G  ++  E  +K + 
Sbjct: 28  LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDF 580
           +   + KA LRR +A E+L  + +A+ D 
Sbjct: 88  IKPDHSKALLRRASANESLGNFTDAMFDL 116

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LK +GN  F  K +N+A+ YY  AI+L+     +YSN +A Y+  G  ++  E  +K + 
Sbjct: 24  LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDF 580
           +   + KA LRR +A E+L  + +A+ D 
Sbjct: 84  IKPDHSKALLRRASANESLGNFTDAMFDL 112

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 475 NLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL 534
           ++ P P+       S+ LK +GNAA   K+++KA++ Y++A+ +   +  Y SNRAAAY 
Sbjct: 4   SMAPTPE-------SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS 56
Query: 535 ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
             G  ++A ED      +D K  KA+ R G AR  +  Y  A + ++  +  E
Sbjct: 57  ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 59/107 (55%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +++E     GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            K + LD  N +A+   G A      Y+EA++ ++ A+ L+P N  A
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 39/213 (18%)
Query: 421 GSMSGCCQVAIPIGKYNEHPISISF-------------ITY---------HGGDKFLLDT 458
           G M  C  VA  +G+  +H I I               I Y          G  KF ++ 
Sbjct: 178 GRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEP 237
Query: 459 VLDL-YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI- 516
             +L Y+   +    A     + DT   ++ + ++KEKG   FKG ++ +AV  Y + + 
Sbjct: 238 NAELIYEVTLKSFEKAKESWEM-DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296
Query: 517 ----------KLNGTSATY----YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
                     K +  S ++    + N A  YL+L  + +A E C K + LD  N K   R
Sbjct: 297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 356
Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595
           RG A+  +  +  A  DF+  + + PQNKAA L
Sbjct: 357 RGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI-----------KLNGTSATY---- 525
           DT   ++ + ++KEKG   FKG ++ +AV  Y + +           K +  S ++    
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
           + N A  YL+L  + +A E C K + LD  N K   RRG A+  +  +  A  DF+  + 
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Query: 586 LEPQNKAANL 595
           + PQNKAA L
Sbjct: 380 VNPQNKAARL 389

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           GNA +K   +++A+ YY +A++L+  SA  + N   AY + G + +A E   K + LD +
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           + +A+   G A      Y+EA++ ++ A+ L+P++  A
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 49/90 (54%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           +E  + +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC+K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQ 578
            I  D   V+AY+R+ TA+ A+  Y  AL+
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALE 93

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 477 VPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNG 520
           V L D +  +  SE LK  GN  FK + W  A+  Y++ +                KL  
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
            + +   N  A  L++  +Q A + C + + +D  N KA  RR    + L  Y++AL D 
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330
Query: 581 KHAMVLEPQNKA 592
           K A  + P++KA
Sbjct: 331 KKAQEIAPEDKA 342

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 489 SELLKEK--GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
            + LKEK  GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 547 SKTISLDKKN-------VKAYLRRGTA-------REALFCYNEALQDFKHAMVLEPQNKA 592
            K I + ++N        KAY R G +       ++A+  YN++L + +   VL+   +A
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
Query: 593 ANLAEKRLR 601
             + +++ R
Sbjct: 122 EKILKEQER 130

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC+K I  D 
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
Query: 555 KNVKAYLRRGTAREALFCYNEALQ 578
             V+AY+R+ TA+ A+  Y  AL+
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALE 228

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 20/129 (15%)
Query: 489 SELLKEK--GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
            + LKEK  GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 547 SKTISLDKKN-------VKAYLRRGTA-------REALFCYNEALQDFKHAMVLEPQNKA 592
            K I + ++N        KAY R G +       ++A+  YN++L + +   VL    K 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL----KK 117
Query: 593 ANLAEKRLR 601
              AEK L+
Sbjct: 118 CQQAEKILK 126

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LK+KGN  F+ K+++ A+ YY+ A++L      +YSN +A Y+ +G  ++  E  +K + 
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQD 579
           L     K  LRR +A E L  + +A+ D
Sbjct: 68  LKPDYSKVLLRRASANEGLGKFADAMFD 95

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
           +N   DA+   K+ GNAA+K K + KA  +Y +AI+L+ ++ T+Y+N+AA Y E   F +
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 542 AEEDCSKTISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAM 584
             + C K + + ++         KA  R G A +     + A+Q F  ++
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYY---------------SEAIKLNGTSATY 525
           ++   ++ S ++KE+G   FK  ++ +A+  Y                EA K        
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
           + N A  +L+L  F  A E C+K + LD  N K   RRG A  A+  +  A  DF+  + 
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQ 258
Query: 586 LEPQNKAAN----LAEKRLRKLIG 605
           L P NKAA     + ++R+R+ + 
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQLA 282

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +++E     GNA +K   +++A+ YY +A++L   +A  + N   AY + G + +A E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            K + L   N +A+   G A      Y+EA++ ++ A+ L P N  A
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 488 ASELLKEK--GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
           + + LKEK  GN A+K K ++ A+ +Y +A +L+ T+ TY  N+AA Y E G + +  E 
Sbjct: 1   SKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCREL 60
Query: 546 CSKTISLDKKNVK-------AYLRRGTA-------REALFCYNEALQDFKHAMVLEPQNK 591
           C K I + ++N +       AY R G +       ++A+  YN++L + +   VL+   +
Sbjct: 61  CEKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPKVLKKCQQ 120
Query: 592 AANL 595
           A  +
Sbjct: 121 AEKI 124

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA------------------IKLNGTSAT 524
           +  + + E L++KGN  F  K + +A++ Y +A                  ++L+  +  
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
            Y+N +  YL +G   +AEE  S+ +  ++ N KA  RR  AR A +  +EA +D K
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 73  LAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            AG+ + +KD+  V +G +        K   + A+  A  V  +   G   +GKT   E 
Sbjct: 64  FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
              +T E + +G   NP                     L   A G D  G VR+PAS CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCG 183
Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTV---GLLARN----ASIL-----HRVGHVLLQLNA 239
           ++G +P+ G +S   ++ +S ++      GL AR+    A++L     HR G       A
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 240 VEP 242
             P
Sbjct: 244 SRP 246

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYY---------------SEAIKLNGTSATY 525
           ++   ++ S ++KE+G   FK  ++ +A+  Y                EA K        
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
           + N A  +L+L  F  A E C+K + LD  N K   RRG A  A+  +  A  DF+  + 
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 586 LEPQNKAAN----LAEKRLRKLIG 605
           L P NKAA     + ++R+R+ + 
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQLA 282

>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 73  LAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            AG+ + +KD+  V +G +        K   + A+  A  V  +   G   +GKT   E 
Sbjct: 64  FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
              +T E + +G   NP                     L   A G D  G VR+PAS CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVCG 183
Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTV---GLLARN----ASIL-----HRVGHVLLQLNA 239
           ++G +P+ G +S   ++ +S ++      GL AR+    A++L     HR G       A
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 240 VEP 242
             P
Sbjct: 244 SRP 246

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +++E     GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 547 SKTISLDKKNVKAYLRRGTARE 568
            K + LD  N +A    G A++
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQ 88

>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 104 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 161
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F     N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 162 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 221
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 222 CGLKPTGNRLSKSGL 236

>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 128 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 185
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F     N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 186 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 245
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 246 CGLKPTGNRLSKSGL 260

>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 142 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 199
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F     N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 200 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 259
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 260 CGLKPTGNRLSKSGL 274

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY-----------------YSN 528
           I A++  K  GN+ FK ++  +A+  Y  AI   G    +                 + N
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLN 235
Query: 529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
            AA  ++L  + +A   C+  ++ ++KN KA  RRG A+  L   + A  DF+ A    P
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
Query: 589 QNKA 592
            +KA
Sbjct: 296 DDKA 299

>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor Length = 550

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 105 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 162
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 163 LSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 222
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 223 CGLKPTGNRLSKSGL 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	605
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	4e-56
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	3e-50
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-50
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	7e-49
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-48
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-48
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	2e-47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-46
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-46
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-44
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	5e-43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-41
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	4e-41
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	2e-40
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	3e-40
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-40
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	7e-40
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	7e-40
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-38
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-35
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-30
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-25
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-22
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-17
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	9e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-04

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  194 bits (495), Expect = 4e-56
 Identities = 61/157 (38%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
            A  PL G+   IKD+ D     T  GS        +    A VV +L + GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSE--IYRGWQPRSDAPVVMMLKRAGATIIGKTT 106

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
              FA              NP    H PGG+SSGSA AV A ++  ALGT T G V  PA
Sbjct: 107 TTAFASRDPTATL------NPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPA 160

Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 224
           ++CG    +PS   +  +GV   S +LDTVGL    A
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARA 197

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  178 bits (455), Expect = 3e-50
 Identities = 74/170 (43%), Positives = 92/170 (54%), Gaps = 10/170 (5%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK-RDHHEAERTAVVVTLLLKNGATCIGKTV 127
            R PL GL   +KD+F VKG  T  G+   K       E  A  V  L + GA    KT 
Sbjct: 61  VRGPLHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPE-EARAVRRLREAGALLFAKTN 116

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
           + E A GITGEN   G   N   PS   GGSS GSAVAVA  +   +LGTDT G +R+PA
Sbjct: 117 MHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPA 176

Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            F G++G++PS+G VS+ G LP S+S D  G L R+   A  L  +  G 
Sbjct: 177 GFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE 226

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  169 bits (430), Expect = 6e-50
 Identities = 45/125 (36%), Positives = 75/125 (60%)

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P  +G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+
Sbjct: 4   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
             A  D ++ I LDKK +K Y RR  +  AL  +  AL+D++  + ++P +K A +  + 
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

Query: 600 LRKLI 604
             K++
Sbjct: 124 CNKIV 128

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score =  176 bits (449), Expect = 7e-49
 Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 30  VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
           +L  T+      NP++N      F       E           A  P AG+ + +KD+  
Sbjct: 27  LLEATIAHVQAVNPEINAVIIPLFEKARRESE----------LASGPFAGVPYLLKDLTV 76

Query: 86  V-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
           V +G +        K   + A+  A  V  +   G   +GKT   E    +T E + +G 
Sbjct: 77  VSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGA 136

Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
             NP       GGSS GS  AVAA L   A G D  G VR+PAS CG++G +P+ G +S 
Sbjct: 137 TRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISP 196

Query: 205 IGVLPNSQS---LDTVGLLAR 222
             ++ +S +       GL AR
Sbjct: 197 GPLVTDSDNVAGAAHEGLFAR 217

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  163 bits (416), Expect = 2e-48
 Identities = 40/117 (34%), Positives = 59/117 (50%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
           ++    LKEKGN A      + A+  YSEAIKL+  +   YSNR+AAY + G +Q+A ED
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
             KT+ L     K Y R+  A E L  + EA + ++  +  E  N       + +  
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  164 bits (417), Expect = 2e-48
 Identities = 42/116 (36%), Positives = 65/116 (56%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + ++K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
            + I L+   +K Y R+  A EA+  Y +A+  ++ A+ L+   K A    +R   
Sbjct: 74  EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  162 bits (412), Expect = 7e-48
 Identities = 37/116 (31%), Positives = 66/116 (56%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           + ++  K KGN  FK   +  A+ +Y+EA+K +  +A  YSNRAA   +L  FQ+A +DC
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
              I LD K +K Y+R+     A+  +++A + ++ A+ ++P N+ A    +   +
Sbjct: 71  DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  173 bits (440), Expect = 2e-47
 Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 23/178 (12%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
            +   L G + AIKD   V G           GF             R A VVT LL  G
Sbjct: 83  TSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPS----------RDATVVTRLLAAG 132

Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
           AT  GK V ++  F  +      G   NP       GGSS GSA  VA   VDFA+G D 
Sbjct: 133 ATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQ 192

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            G +R+PA+FCG++G++P+ G V   G  P  +++D +G + R    A+++  V  G 
Sbjct: 193 GGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGR 250

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  161 bits (410), Expect = 2e-47
 Identities = 35/111 (31%), Positives = 61/111 (54%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
            +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
            + + LD ++VKA+   G  +  +  Y+EA+ + + A  L  + +     +
Sbjct: 67  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 117

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  161 bits (410), Expect = 3e-47
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQA 542
             + E L+++GN  FK   +  A+  Y++A+ L+ T    A  + NRAA +L+L  + +A
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84

Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
           E + SK I  D  +VKA  RR  A E L   ++A+ D +  + LEP+NK    A + +  
Sbjct: 85  ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  159 bits (404), Expect = 1e-46
 Identities = 38/110 (34%), Positives = 55/110 (50%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           +E  + +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC+K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
            I  D   V+AY+R+ TA+ A+  Y  AL+    A   + +    + A +
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 113

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  159 bits (404), Expect = 1e-46
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 4/120 (3%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +E LK +GN   K + +  AV++Y +AI+LN  +A Y+ NRAAAY +LG +  A +DC
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA----NLAEKRLRK 602
            + I +D    KAY R G A  +L  + EA+  +K A+ L+P N+       +AE +LR+
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  159 bits (404), Expect = 4e-46
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P +      S+ LK +GNAA   K+++KA++ Y++A+ +   +  Y SNRAAAY   G  
Sbjct: 2   PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH 61

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL---- 595
           ++A ED      +D K  KA+ R G AR  +  Y  A + ++  +  E    +  +    
Sbjct: 62  EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121

Query: 596 --AEKRLRK 602
              ++++ +
Sbjct: 122 ETTKRKIEE 130

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  158 bits (402), Expect = 2e-44
 Identities = 36/118 (30%), Positives = 62/118 (52%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
            +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
            + + LD ++VKA+   G  +  +  Y+EA+ + + A  L  + +     +      I
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score =  161 bits (410), Expect = 5e-43
 Identities = 70/398 (17%), Positives = 134/398 (33%), Gaps = 47/398 (11%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            L G+  ++K+ F  KG+ +  G    +     +E   VVV +L   GA     T + + 
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQS 184

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
            F     N  +G  +NP   S  PGGSS G    + +      LGTD  G +R P++FCG
Sbjct: 185 MFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 244

Query: 192 ILGYRPSHGTVSMIGVLP----NSQSLDTVGLLARNAS---ILHRV-----------GHV 233
           I G +P+   +S  G+       +    ++G +AR+     +  +               
Sbjct: 245 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 304

Query: 234 LLQLNAVEPRRARRLIFA----DDIFQLSKVPKLKTIHVISKAIESLS--GYQ-----NP 282
            L       R +R L       D+    S  P ++    + +  + L   G+        
Sbjct: 305 PLPFREEVYRSSRPLRVGYYETDNYTMPS--PAMR--RALIETKQRLEAAGHTLIPFLPN 360

Query: 283 EHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342
                 + +++      G R+   + +           +++      FK +    +K   
Sbjct: 361 NIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLF 420

Query: 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI--PTVSDPPLKL 400
           PRL       +     + +   K L       R ++    K   + V+  P +       
Sbjct: 421 PRLAA-FLNNMRPR--SAEKLWK-LQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLN 476

Query: 401 NTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNE 438
              +   A  +      + + +        +P+     
Sbjct: 477 TPGRATGAVSY------TMLYNCLDFPAGVVPVTTVTA 508

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  145 bits (367), Expect = 2e-41
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 10/123 (8%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
              KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C K 
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 550 ISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN---LAEKR 599
           I + ++N        KAY R G +      Y +A+  +  ++              AEK 
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124

Query: 600 LRK 602
           L++
Sbjct: 125 LKE 127

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  155 bits (394), Expect = 4e-41
 Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 29/182 (15%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
            R PL G+   +KD  +     T        GF   D           A +V  L   GA
Sbjct: 74  LRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPDD-----------AYLVRRLRDAGA 122

Query: 121 TCIGKTVLDEFAFGITGENK-----HYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFAL 175
             +GKT L E+A     ++        G   NP   SH P GSSSGSAVAVAA L   A+
Sbjct: 123 VVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAI 182

Query: 176 GTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV-- 230
           GT+T G +  PA+  G++G +P+ G VS  G++P S S DT G +AR+   A+ +     
Sbjct: 183 GTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA 242

Query: 231 GH 232
           G 
Sbjct: 243 GR 244

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score =  152 bits (387), Expect = 2e-40
 Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 23/177 (12%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
              PLAGL  A+KD    +G  T         F  P            A  V  L   GA
Sbjct: 54  PGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPP----------YEATAVARLKALGA 103

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
             +GKT LDEF  G + E+  +    NP  P  +PGGSS GSA A+AA L   ALG+DT 
Sbjct: 104 LVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTG 163

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
           G VR PA+FCG+ G +P++G VS  G++  + SLD +G +AR+    ++L     G 
Sbjct: 164 GSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGP 220

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score =  152 bits (386), Expect = 3e-40
 Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 23/178 (12%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
               PL G+  A+KD   V+G  T         F +P            A V+  L K G
Sbjct: 59  ERELPLFGIPIAVKDNILVEGEKTTCASKILENFVAP----------YDATVIERLKKAG 108

Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
           A  +GKT LDEFA G + E   +    NP     +PGGSS GSA +VA      +LG+DT
Sbjct: 109 ALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDT 168

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            G +R PASFCG++G +P++G VS  G++  + SLD +G+  R     +++  V  G 
Sbjct: 169 GGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGW 226

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  141 bits (358), Expect = 3e-40
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
           +N   DA+   K+ GNAA+K K + KA  +Y +AI+L+ ++ T+Y+N+AA Y E   F +
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 542 AEEDCSKTISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
             + C K + + ++         KA  R G A +     + A+Q F  ++      +   
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 595 L---AEK 598
                EK
Sbjct: 121 KVKELEK 127

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score =  151 bits (383), Expect = 7e-40
 Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 23/178 (12%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
             +    G+  AIKD     G  T         + S             A VV  + + G
Sbjct: 54  EKKGKFWGIPVAIKDNILTLGMRTTCASRILENYESV----------FDATVVKKMKEAG 103

Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
              +GK  LDEFA G + E   +    NP     +PGGSS GSA AV+A +V  ALG+DT
Sbjct: 104 FVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 163

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            G VR PAS CG++GY+P++G VS  G++  + SLD +G + +    A+IL  +  G 
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 221

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score =  151 bits (383), Expect = 7e-40
 Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 23/177 (12%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
               L G+   IKD     G  T        GF               + V+  L K  A
Sbjct: 67  MDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPI----------YESTVMEKLHKENA 116

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
             IGK  +DEFA G + E  ++   VNP     +PGGSS GSA AVAA LV  +LG+DT 
Sbjct: 117 VLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTG 176

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
           G +R PA++CG++G +P++G VS  G++  + SLD +G L RN    +I+     G 
Sbjct: 177 GSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  138 bits (349), Expect = 2e-38
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI------------------KLNGTSATYYS 527
           + + E L++KGN  F  K + +A++ Y +A+                  +L+  +   Y+
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
           N +  YL +G   +AEE  S+ +  ++ N KA  RR  AR A +  +EA +D K  +   
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 588 PQNKAANLAEKRLRK 602
           P   +    E ++  
Sbjct: 128 PAAASVVAREMKIVT 142

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  135 bits (341), Expect = 6e-38
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
            E  KE+GN+ FK   + +AV+ Y + I     +   YSN+A A ++LG + QA + C +
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 549 TISLDKKNVKAYLRR------GTAREALFCYNEALQDFKHA 583
            +          +R         A+ A+      + +    
Sbjct: 64  GLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  131 bits (331), Expect = 1e-35
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNGTSATYYSNR 529
           + ++  +KE+GN  FK  + N+A+  Y EA+                K      +   N 
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94

Query: 530 AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
           A  Y +   + +A +  SK + +DK NVKA  + G A        EA ++   A  L P 
Sbjct: 95  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154

Query: 590 NKAANLAEKRLRKLI 604
           N     + +     +
Sbjct: 155 NLDIRNSYELCVNKL 169

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  136 bits (344), Expect = 9e-35
 Identities = 44/121 (36%), Positives = 73/121 (60%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
           G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+  A 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
            D ++ I LDKK +K Y RR  +  AL  +  AL+D++  + ++P +K A +  +   K+
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

Query: 604 I 604
           +
Sbjct: 121 V 121

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  127 bits (321), Expect = 9e-33
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRA 530
           ++ S ++KE+G   FK  ++ +A+  Y + +               K        + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
             +L+L  F  A E C+K + LD  N K   RRG A  A+  +  A  DF+  + L P N
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

Query: 591 KAANLAEKRLRKLI 604
           KAA       ++ I
Sbjct: 264 KAAKTQLAVCQQRI 277

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  123 bits (310), Expect = 2e-30
 Identities = 31/133 (23%), Positives = 49/133 (36%)

Query: 471 NIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530
           +   +L        S+   E   E G       Q   A++ +  A+  +  +   Y  RA
Sbjct: 8   SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA 67

Query: 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
             +L +G  + A  D +K I L      A L+RG         +EA  DFK  +   P  
Sbjct: 68  TVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127

Query: 591 KAANLAEKRLRKL 603
                A+ +L K 
Sbjct: 128 NEEKEAQSQLIKS 140

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  103 bits (258), Expect = 1e-23
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
             +     L E      +  ++  A + Y   +K   + A Y           + +    
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN----L 595
            +A   CS+ + ++  NV A   R  A      Y+EA+QD++ A      ++        
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

Query: 596 AEKRLRK 602
           A++ L++
Sbjct: 372 AQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  100 bits (251), Expect = 1e-22
 Identities = 22/119 (18%), Positives = 50/119 (42%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
             D  + L+ +   AF    +  A+ +  + +++    A     RA  +++ G  ++A  
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
           D      L   N +A+ +  T    L  +  +L + +  + L+  +K      K+++KL
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +EL + +     K  +  KA++    A KL   +   +   +  Y +LG  + +  + 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 547 SKTISLDKKNVKAYLRRGTAR---------EALF---CYNEALQDFKHAMVLEPQNKAAN 594
            + + LD+ + + +      +         E L     Y +A   ++  M  EP      
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 14/116 (12%), Positives = 40/116 (34%)

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           + + +       +   +   K ++  +A+   SE +++   +     +RA AYL    + 
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346

Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
           +A +D       ++ + +       A+  L    +        +    + +    A
Sbjct: 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 15/114 (13%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS---------------NRAAAYLELGCF 539
           +G+   K  + ++A + + + +K N +                     ++A      G +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             A     K + +   + +    R           +A+ D K A  L+  N  A
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  118 bits (298), Expect = 3e-30
 Identities = 37/107 (34%), Positives = 53/107 (49%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           + +E  + +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           +K I  D   V+AY+R+ TA+ A+  Y  AL+    A   + +    
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 99.2 bits (248), Expect = 2e-23
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           ++  K +GN  +K +Q+++A+ +Y++A +L+    TY +NRAAA  E G ++ A    + 
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63

Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
            +   ++    Y     +   +      L D K  +    ++   +
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 17/99 (17%), Positives = 32/99 (32%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
             +   K +   K +        +N   A         Y     +  A +  ++ I    
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           ++ + Y  R  A   L  + EA+ D   A+  +P    A
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.8 bits (190), Expect = 7e-16
 Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +  A ++  ++  A++  ++A++        Y   + ++  +G       D  KTI   +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           K++  + R       L    + L+  +    + P+    
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 3/104 (2%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
              +  +       +    + I+    S T +   A    +L   ++  +       ++ 
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           +  +     G        +  A++ +   +   P++     N A
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +  A  K   + +A+   ++AI+ +      Y  +A A + +  +  A E      + D 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 555 KNVKAYLRRGTAREALFCYNEALQ 578
           +       R   +     Y +A Q
Sbjct: 239 EVNNGSSAREIDQL----YYKASQ 258

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  117 bits (295), Expect = 7e-29
 Identities = 30/114 (26%), Positives = 46/114 (40%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           E   E G       Q   A++ +  A+  +  +   Y  RA  +L +G  + A  D +K 
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
           I+L      A L+RG         +EA  DFK  +   P  +    AE +L K 
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  107 bits (269), Expect = 2e-25
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
             +     L E      +  ++  A + Y   +K   + A Y           + +    
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL-- 595
            +A   CS+ + ++  NV A   R  A      Y+EA+QD++ A      ++     L  
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348

Query: 596 AEKRLRK 602
           A++ L++
Sbjct: 349 AQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 23/118 (19%), Positives = 51/118 (43%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
            D  + L+ +   AF G  +  A+ +  + +++    A     RA  +++ G  ++A  D
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176

Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
                 L   N +A+ +  T    L  +  +L + +  + L+  +K      K+++KL
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.5 bits (202), Expect = 7e-17
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +EL + +     K  +  KA++    A KL   +   +   +  Y +LG  + +  + 
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 547 SKTISLDKKNVKAYLRRGTAR---------EALFC---YNEALQDFKHAMVLEPQNKAAN 594
            + + LD+ + + +      +         E L     Y +A   ++  M  EP      
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 13/90 (14%), Positives = 35/90 (38%)

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           + + +       +   +   K ++  +A+   SE +++   +     +RA AYL    + 
Sbjct: 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323

Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREAL 570
           +A +D       ++ + +       A+  L
Sbjct: 324 EAIQDYEAAQEHNENDQQIREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR---------------AAAYLELGCF 539
           +G+   K  + ++A + + + +K N +                       A    +   +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             A     K + +   + +    R           +A+ D K A  L+  N  A
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  115 bits (289), Expect = 2e-27
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +  LK+KGN  F+ K+++ A+ YY+ A++L      +YSN +A Y+ +G  ++  E  
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDF-KHAMVLEPQNKAANLAEKRLRKLIG 605
           +K + L     K  LRR +A E L  + +A+ D    ++  +  + +     +R      
Sbjct: 63  TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 94.8 bits (236), Expect = 9e-21
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +  L+  G   F       A     +AI+L       Y   A    +     +     
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYF 293

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            K + LD  N   Y  RG     L  Y++A +DF  A  L+P+N      LA
Sbjct: 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE---------LG 537
           +A E+             ++KA+  Y  AI+L       Y   A    +         + 
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
            F +A     K   LD ++ +A +     +      +EA+  F+ +  L    +    A
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G   F  + +++A   + +A +L+  +   Y   A        F   E   S+      
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           +  +              +++AL+ +  A+ LE +       +A
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
               A++  +++     +SEA +    +    +  A    +   F +A +     I L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 555 KNVKAYLRRGTA---------REALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           K    Y+                 +  + EA    + A  L+P+++ A   LA
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.3 bits (206), Expect = 5e-17
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                       +  NY+ +A+KL+  +++ Y +R      L  + QA +D  K   LD 
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
           +N+  Y++          +++    F  A    P+        AE
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELL-KEKGNAAFKGKQWNKAVNYYSEAIKLNGT 521
           +  +       + L   P          L       + F   +       Y E+ + +  
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189

Query: 522 SATYYSNRAAAYLE------------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569
                SN      E               F++  +  ++   L +K   +    G  +  
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249

Query: 570 LFCYNEALQDFKHAMVLEPQNKA 592
                 A +D K A+ L P+  +
Sbjct: 250 KNDPLGAHEDIKKAIELFPRVNS 272

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
           + + +A N   +A KL+  S       A   L+     +A     ++  L +   +    
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488

Query: 563 RGTAREALFCYNEALQD 579
              A  A     + ++ 
Sbjct: 489 ITFAEAAK--VQQRIRS 503

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  110 bits (275), Expect = 1e-26
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 17/132 (12%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAI-----------------KLNGTSATYYSNRAAA 532
           +  K  GN+ FK ++  +A+  Y  AI                          + N AA 
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 533 YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
            ++L  + +A   C+  ++ ++KN KA  RRG A+  L   + A  DF+ A    P +KA
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299

Query: 593 ANLAEKRLRKLI 604
                + L +  
Sbjct: 300 IRRELRALAEQE 311

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  109 bits (274), Expect = 2e-25
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           +  LK +GN  F  K +N+A+ YY  AI+L+     +YSN +A Y+  G  ++  E  +K
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
            + +   + KA LRR +A E+L  + +A+ D    + L      A++     R L
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNL 138

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
            D+Y SL     +   L          +A+  L   G   F       A     E+I L+
Sbjct: 222 TDMYHSLLSANTVDDPLRE--------NAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
            T  +Y    A    +    Q+  +   K + L+ +    Y  RG     L  Y  A +D
Sbjct: 274 PTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332

Query: 580 FKHAMVLEPQNKAA--NLA 596
           F+ A  L P+N      LA
Sbjct: 333 FQKAQSLNPENVYPYIQLA 351

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 89.0 bits (221), Expect = 7e-19
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                   +   +   ++ +A+ LN      Y +R   Y  L  ++ A+ED  K  SL+ 
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
           +NV  Y++          + E+   F    +  P         AE
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 6e-17
 Identities = 16/99 (16%), Positives = 34/99 (34%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G   F  + +  A   + +A  LN  +   Y   A    + G F ++E   ++T     
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
              +              ++ A++ +  A  LE   +  
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 18/120 (15%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                +K  ++ ++  +++E      T     +  A    + G F  A +       L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 555 KNVKAYLRRGTAREALFC----------------YNEALQDFKHAMVLEPQNKAA--NLA 596
              K ++  G                        +N A++    A  L+P+++ A   LA
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 16/123 (13%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-------------- 532
              E+             ++ A+  Y  A +L       +                    
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 533 --YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
              L+   F  A +  +K   LD ++ +A +     +  +   +EA++ F+ + +L    
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 591 KAA 593
              
Sbjct: 496 DEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 3/110 (2%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
              L            ++  ++  +    L   +A         +        A+    +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           +I+L      +Y+             E  + F+ A+ L P+      +  
Sbjct: 269 SINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 507 KAVNYYSEAIKLN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
                 ++   L+       A    NR   +     F +A +     I LD      Y  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
                 +     + ++    A+ ++P +  A    A
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE--LGCFQQAEEDCSKTISL 552
           + ++      ++ A    S+A++   ++       A   L      +       +    L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
            +    A    G          +A    + ++ L P   +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 2/107 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                   +       +++N A+   ++A +L+  S       A   L++    +A E  
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             +  L +   +    + T         + L+             A 
Sbjct: 486 EDSAILARTMDEKL--QATTFAEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                 + ++ ++A+  + ++  L  T           + E    Q+         +  +
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKIQKRLRADPIISAKME 525

Query: 555 KNVKAYLRRG 564
             +  Y  +G
Sbjct: 526 LTLARYRAKG 535

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 16/144 (11%)

Query: 477 VPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNG 520
           V L D +  +  SE LK  GN  FK + W  A+  Y++ +                KL  
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270

Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
            + +   N  A  L++  +Q A + C + + +D  N KA  RR    + L  Y++AL D 
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330

Query: 581 KHAMVLEPQNKAANLAEKRLRKLI 604
           K A  + P++KA      ++++ I
Sbjct: 331 KKAQEIAPEDKAIQAELLKVKQKI 354

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 99.0 bits (246), Expect = 3e-22
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRAAAYLEL 536
           +KEKG   FKG ++ +AV  Y + +                        + N A  YL+L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330

Query: 537 GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
             + +A E C K + LD  N K   RRG A+  +  +  A  DF+  + + PQNKAA L 
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390

Query: 597 EKRLRKLI 604
               +K  
Sbjct: 391 ISMCQKKA 398

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 84.4 bits (209), Expect = 1e-19
 Identities = 23/118 (19%), Positives = 38/118 (32%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D  E L   G   ++  +W+ A   +     L+   A Y+    A    LG ++QA +  
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
           S    +D    +           L   + A   F  A  L     A      R   ++
Sbjct: 76  SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 59.8 bits (145), Expect = 5e-11
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 512 YSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
            +    L+  +            + G +  A++       LD  + + +L  G  R++L 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 572 CYNEALQDFKHAMVLEPQNKAA--NLAE 597
            Y +ALQ + +  +++        + AE
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAE 94

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 82.9 bits (205), Expect = 6e-19
 Identities = 19/117 (16%), Positives = 39/117 (33%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D  + +       +   +  +A  ++      +  +  Y    AA Y     FQQA +  
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
           +   +L K +       G  +  L    +A + F+  +      K    A+  L  +
Sbjct: 94  AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 2/88 (2%)

Query: 512 YSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
             +   +         + A  +   G  ++AE         D  NV   +      +   
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 572 CYNEALQDFKHAMVLEPQNKAA--NLAE 597
            + +A   +  A  L   +     +  +
Sbjct: 85  QFQQAADLYAVAFALGKNDYTPVFHTGQ 112

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.1 bits (214), Expect = 3e-18
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + +L    +  F+ ++ +++ ++ + AIK N   A  YSN    Y E G  Q+A E  
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
              + L    +  Y+    A  A      A+Q +  A+   P       +L 
Sbjct: 91  RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 82.2 bits (204), Expect = 6e-17
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GN   + + +++AV  Y  A+ L+   A  + N A  Y E G    A +   + I L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
               AY     A +      EA   +  A+ L P +  +  NLA
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GN   +  Q  +A+ +Y  A++L       Y N AAA +  G  + A +     +  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
                    G   +AL    EA   +  A+  +P    A  NL 
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
             NA  +     +A + Y+ A++L  T A   +N A    E G  ++A     K + +  
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           +   A+    +  +      EAL  +K A+ + P    A  N+ 
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                ++    + A++ Y  AI+L       Y N A A  E G   +AE+  +  + L  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            +  +       +       EA++ ++ A+ + P+  AA  NLA
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G       +   A++++ +A+ L+      Y N      E   F +A     + +SL  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            +   +             + A+  ++ A+ L+P    A  NLA
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 77.6 bits (192), Expect = 2e-15
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GN      +  +A   Y +AI+     A  +SN    +   G    A     K ++LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
             + AY+  G   +    ++ A+  +  A+ L P +     NLA
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 4e-15
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
              A         AV  Y  A++ N       S+       LG  ++A+    K I    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
               A+   G    A      A+  F+ A+ L+P    A  NL 
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           E  +  ++   +  A  +  +  +    +       ++ + +     ++    +  I  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
               +AY   G   +      EA++ ++HA+ L+P       NLA
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 16/76 (21%), Positives = 30/76 (39%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
             N   +     +AV  Y +A+++    A  +SN A+   + G  Q+A     + I +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 555 KNVKAYLRRGTAREAL 570
               AY   G   + +
Sbjct: 371 TFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
               A    + G F+ AE  C +    +  N    L   +        + +      A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 586 LEPQNKAA--NLA 596
             P    A  NL 
Sbjct: 62  QNPLLAEAYSNLG 74

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
             +   +  +  +A+ +Y EAI+++ T A  YSN      E+ 
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 21/99 (21%), Positives = 33/99 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    K  Q + A+  Y  A+  + T    Y    + +   G F  A +   K I    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            + K +   G A      Y +A   F   + L+P     
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 3/111 (2%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
              ++  + G+  +    +  A+ Y  + I+   T    +     AY     + +A+   
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165

Query: 547 SKTISLDKKNVKAYLRRGTAREAL---FCYNEALQDFKHAMVLEPQNKAAN 594
            K + L       YL R  A  A         A   ++  + +     A  
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS---KTIS 551
             +  FK   + +A+  +++       S   Y+ RA  Y EL  +  A++D       ++
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
             K     +   G         + A+Q ++ A+  +         + 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG 115

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 10/115 (8%), Positives = 34/115 (29%), Gaps = 5/115 (4%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNY---YSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
           ++  +   +    ++  +++ A      Y   +      +  +       ++ G    A 
Sbjct: 35  NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94

Query: 544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           +     +  D   +  Y + G+       +  A+Q  +  +     +      L 
Sbjct: 95  QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 11/110 (10%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC---FQQAEEDCSKTIS 551
            G A +  K++ KA + + + ++L       Y  RA A            A+    K I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 552 LDKKN--------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           +            ++A               +A   +K+ + L+P NK A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 11/83 (13%)

Query: 495 KGNAAFKGKQWNK---AVNYYSEAIKLNGTSATY--------YSNRAAAYLELGCFQQAE 543
           +  A        K   A  YY + I++                   A  Y       +A+
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241

Query: 544 EDCSKTISLDKKNVKAYLRRGTA 566
                 ++LD  N KA       
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMK 264

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD-- 579
           +       A    +   + +A E  +K  +    +   Y RR      L  Y+ A +D  
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 580 -FKHAMVLEPQNKAA 593
            +   +       A 
Sbjct: 62  TYFSKVNATKAKSAD 76

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G  A   K W  A++ +S    +    +    N    Y  L    +AE+  +++I+ DK
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
               AY +RG        Y+ A++D K A++    N+ 
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 106

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 40/132 (30%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYS---------------NRAAAYLELGC 538
           +G   ++ ++++ A+    EA+  L G     Y                N A  Y +   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 539 FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP---------- 588
           +++AEE  +   S+  +   + +            ++A++      + EP          
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKI------------DKAMECVWKQKLYEPVVIPVGRLFR 184

Query: 589 --QNKAANLAEK 598
             + + A LA+K
Sbjct: 185 PNERQVAQLAKK 196

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
           A    N      +   ++ A +  S    +   + +     G     L    EA + F  
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 583 AMVLEPQNKAA 593
           ++  +     A
Sbjct: 63  SINRDKHLAVA 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 14/98 (14%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-- 552
           +G   +    + ++++ + +AI+L+   + Y+  +  A   L  +++A +  +  I++  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
           D+ N   +  +  A   +       +  +    LE  +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 55.5 bits (135), Expect = 9e-10
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
           +   Y        + G + ++ +   K I LD +  K +L +G A   L  Y EA+  + 
Sbjct: 5   NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64

Query: 582 HAMVLEP 588
           + + +  
Sbjct: 65  YVINVIE 71

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 462 LYDSLQEQVNIAS-----NLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI 516
           L  +LQ++V +A          L D      A +LL E+G           A N +S+A+
Sbjct: 15  LQPTLQQEVILARMEQILASRALTDDE---RA-QLLYERGVLYDSLGLRALARNDFSQAL 70

Query: 517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEA 576
            +       ++       + G F  A E     + LD     A+L RG A         A
Sbjct: 71  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130

Query: 577 LQDFKHAMVLEPQNKAANL 595
             D       +P +   +L
Sbjct: 131 QDDLLAFYQDDPNDPFRSL 149

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    +   ++ A   +   ++L+ T    + NR  A    G  + A++D       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA-NLAEKRLRKL 603
            +    L    A + L    +A +  K       + +   N+ E  L  +
Sbjct: 143 NDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 1/87 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GN + +     +     ++   L    +         YL LG    A       ++ + 
Sbjct: 188 LGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFK 581
            N   +         L    + L +  
Sbjct: 247 HNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA---AAYLELGCFQQAEEDCSKTISLDKK 555
           A +     +A     +  + +      ++          E    ++ + D +   SL + 
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             +     G    +L   + A   FK A+     N   
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
            G         + A   +  A+  N  +   +         LG  Q    +  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.9 bits (198), Expect = 6e-17
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
             N      +  +A+ +Y +A++L+ ++AT Y      Y+    +++A++   K +    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           +N   +   GT    L     AL   + A+ L   +  A     
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.5 bits (197), Expect = 6e-17
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    K +Q   A+ Y   A++LN                 G   +A    +     D 
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            +  A+   G          +AL+    A+ ++P +  A     
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.1 bits (196), Expect = 9e-17
 Identities = 15/99 (15%), Positives = 38/99 (38%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GN     + + +A + + +A++    +   +       ++L   + A     + + L++
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            + +A  + G         +EAL  F      +P +  A
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
                +   + KA   +++AI+ N   A  Y N A     +   ++A     K + LD  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
              AY   G        Y EA   F+ A+    +N      L 
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 507 KAVNYYSEAIKLNGTSATYYSNRAAAYL----ELGCFQQAEEDCSKTISLDKKNVKAYLR 562
            + +++  +  L    +   S      +    E G +++A E  +K I  +K++   Y+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
                 ++     AL  +  A+ L+     A     
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 10/76 (13%), Positives = 25/76 (32%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G         ++A++ ++   + +   A  + N    Y      ++A E   K I +  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 555 KNVKAYLRRGTAREAL 570
            ++ A   +       
Sbjct: 225 DHMLALHAKKLLGHHH 240

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 7/124 (5%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA---ANL----AEKR 599
            +   L  + V A    G  R AL      L     A+     +     A L    A   
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDA 495

Query: 600 LRKL 603
           ++KL
Sbjct: 496 VKKL 499

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 15/107 (14%), Positives = 27/107 (25%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +          +   + +    +A  L        ++       L   Q+     
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L  + V A       ++AL      L     A  L PQ   A
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 16/104 (15%), Positives = 28/104 (26%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +   G      +   + +    +A  L        ++       L   Q+      + 
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 268

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L  + V A       ++AL      L     A  L PQ   A
Sbjct: 269 HGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 16/107 (14%), Positives = 29/107 (27%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L  + V A    G  ++AL      L     A  L P+   A
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.4 bits (196), Expect = 8e-16
 Identities = 17/107 (15%), Positives = 30/107 (28%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +   G      +   + +    +A  L        ++ +     L   Q+     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L  + V A    G  ++AL      L     A  L PQ   A
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 17/104 (16%), Positives = 29/104 (27%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +   G      +   + +    +A  L        ++       L   Q+      + 
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L  + V A    G  ++AL      L     A  L PQ   A
Sbjct: 235 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 16/104 (15%), Positives = 27/104 (25%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q       + 
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L  + V A    G  ++AL      L     A  L PQ   A
Sbjct: 167 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 14/99 (14%), Positives = 26/99 (26%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                   +   + +    +A  L        ++       L   Q+      +   L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           + V A       ++AL      L     A  L P+   A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 16/107 (14%), Positives = 28/107 (26%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    +          +     +    +A  L        ++       L   Q+     
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L  + V A    G  ++AL      L     A  L PQ   A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 14/104 (13%), Positives = 27/104 (25%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 73  VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 132

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L  + V A       ++AL      L     A  L P+   A
Sbjct: 133 HGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 498 AAFKGKQWNKAVNYYSEA-----IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           A   G    +AV+ +  A     + L        ++       L   Q+      +   L
Sbjct: 42  AKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 101

Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             + V A       ++AL      L     A  L P+   A
Sbjct: 102 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 142

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 15/108 (13%), Positives = 27/108 (25%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
           ++      +   A         A       ++L+       + R                
Sbjct: 1   LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60

Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
               ++L  + V A       ++AL      L     A  L PQ   A
Sbjct: 61  TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----------------GTSATYYSNRAAAY 533
           + + +K +AA +  Q  +AV+Y+ + I LN                  S+   +  A AY
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64

Query: 534 LELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   + +A     + +     NV         +       +AL+ ++  + LE  N AA
Sbjct: 65  KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124

Query: 594 NL 595
           N+
Sbjct: 125 NI 126

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 76.7 bits (189), Expect = 4e-16
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +S+L  E   A  K + ++KA  +Y E ++    +       A   +  G  + A     
Sbjct: 53  SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112

Query: 548 KTISLDKKNVKAYLRRGTA-REALFCYNEALQDFKHAMVLEPQNKAA 593
           K + L+  N+ A +  G           + L+     +    + + A
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.5 bits (178), Expect = 8e-15
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEED 545
           +  + L+          Q   A+  Y + ++L   +          Y       ++  E 
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145

Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
             K +S   K   A  R G ++     Y +A    +  ++  P  +A  
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 18/96 (18%)

Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFC------- 572
           G S      + +A +E G   QA     +TI+L+    + Y      + +          
Sbjct: 1   GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 573 ---------YNEALQDFKHAMVLEPQNKAA--NLAE 597
                    Y++A   +K  +   P N       AE
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           KG +  K  ++++AV    +    +        +   AY++ G   +  E   ++++   
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL 595
            NVK     G     +  Y+ A+          P N      L
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.1 bits (178), Expect = 7e-15
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    + ++++ AV    +  + N  +         A   LG F +A +     + L  
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA 596
              K +     + E +  + EAL  FK A  L+    +  LA
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA-SVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 72.1 bits (178), Expect = 8e-15
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G A  K    ++       ++     +    +     Y+++  +  A     K    + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            N     R G A + L  ++EA+  FK A+ L P        +A
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE 575
           +  +     YY ++  ++ + G + QA     +    D  +V   L  G A       + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 576 ALQDFKHAMVLEPQNKAA--NL 595
             +  + ++   P N      L
Sbjct: 61  GTELLERSLADAPDNVKVATVL 82

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 15/96 (15%), Positives = 32/96 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G       + ++A  Y+S++  ++      +   A ++   G   QA    +    L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
                YL  G     L     A +  + +  L   +
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQ 541
             LL E G  AF       A+N++  A+ L           A  ++N   AY +L  +  
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534

Query: 542 AEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
           A +  ++ + L   +   +               A+     ++ + P    A   L  
Sbjct: 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
               D L+   +  S++  L  +      S+LL  K +  F   ++   +   ++ ++++
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKS------SDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
             +   Y    A+  E G   +     +  +    +    +L  G     +   +EA + 
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395

Query: 580 FKHAMVLEPQNKAA 593
           F  +  ++PQ   A
Sbjct: 396 FSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 13/101 (12%), Positives = 37/101 (36%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           ++      +  +  + NK     ++ +  +   A  +      YL +    +A    SK+
Sbjct: 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
            ++D +   A++    +      +++A+  +  A  L    
Sbjct: 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 15/100 (15%), Positives = 40/100 (40%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
             ++     + ++A++ Y+ A +L   +   Y      +++LG    A E    + +L +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
            +       G           A+  F++A++L  + ++  
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 14/126 (11%), Positives = 32/126 (25%)

Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
           +  E+ ++   L     +         L          +   +    Y  +I     S+ 
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306

Query: 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAM 584
               +A        F       +K + +D  N+  Y     +       N+        +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366

Query: 585 VLEPQN 590
              P+ 
Sbjct: 367 DRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 13/72 (18%), Positives = 30/72 (41%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G+A  K K ++ A++  ++ + L+   A  ++  A  YL       A     +++++  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 555 KNVKAYLRRGTA 566
             + A      A
Sbjct: 582 NEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 21/173 (12%), Positives = 46/173 (26%), Gaps = 40/173 (23%)

Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSID-ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518
           L+L            N   L   +G I   + +   +G        +++A   Y EA+ +
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229

Query: 519 NGTSA--------------------------------------TYYSNRAAAYLELGCFQ 540
           +                                          + Y  +          +
Sbjct: 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289

Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           +AE D   +I+  +K+    L +         + + L      + ++P N   
Sbjct: 290 RAE-DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 15/118 (12%), Positives = 30/118 (25%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D  E L       ++   +  A   +     L+   + ++    A    +G +  A    
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
           S    +D    +                EA      A  L            R+  ++
Sbjct: 79  SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 12/82 (14%), Positives = 32/82 (39%)

Query: 512 YSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
            +   +++  +     + A    + G ++ A         LD  + + +L  G  R+A+ 
Sbjct: 10  IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69

Query: 572 CYNEALQDFKHAMVLEPQNKAA 593
            Y+ A+  + +  V++      
Sbjct: 70  QYDLAIHSYSYGAVMDIXEPRF 91

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 29/96 (30%), Positives = 56/96 (58%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GNA +K   +++A+ YY +A++L+  SA  + N   AY + G + +A E   K + LD 
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
           ++ +A+   G A      Y+EA++ ++ A+ L+P++
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 71.3 bits (176), Expect = 4e-15
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GNA +K   +++A+ YY +A++L+  SA  + N   AY + G + +A E   K + LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL--AEKRLRKL 603
           ++ +A+   G A      Y+EA++ ++ A+ L+P++  A  NL  A  +    
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
           A  + N   AY + G + +A E   K + LD ++ +A+   G A      Y+EA++ ++ 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 583 AMVLEPQNKAA--NLA 596
           A+ L+P++  A  NL 
Sbjct: 61  ALELDPRSAEAWYNLG 76

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E   K + LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NL 595
            N +A+   G A      Y+EA++ ++ A+ L+P N  A  NL
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E   K + LD 
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 555 KNVKAYLRRGTAREAL 570
            N +A    G A++  
Sbjct: 109 NNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
           A  + N   AY + G + +A E   K + LD  N +A+   G A      Y+EA++ ++ 
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 583 AMVLEPQNKAA--NL 595
           A+ L+P N  A  NL
Sbjct: 69  ALELDPNNAEAWYNL 83

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 12/99 (12%), Positives = 33/99 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G        ++ A      A++L    A  ++   A        Q+A +  ++ + ++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             V+       +   +  Y+ A +    A+ ++      
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 15/104 (14%), Positives = 32/104 (30%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           E   E+G +  K     +A   +    +        + +      E      A    +  
Sbjct: 22  ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             LD K++  +     +       N AL   +  ++ +PQ +  
Sbjct: 82  RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +        ++ +       A+++N   A  +++    Y     +  A  +  + + L  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            + + + + G          EAL  +  A+ + P       N+A
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 19/106 (17%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G     G +  +A++ Y+ A+ +N        N A +Y  +  +  A +   + I +  
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271

Query: 555 KNVKAYLRRGTAR-------------------EALFCYNEALQDFK 581
                                                Y + ++ F 
Sbjct: 272 GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 17/119 (14%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    + ++   A+   + A  L+      ++  A ++        A       +    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 555 KNVKAYLRRGTAREALFC---------------YNEALQDFKHAMVLEPQNKAA--NLA 596
           +  +       A   +                 Y E       A+ + P +     +L 
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
              +    Y                   + L+L    +A            +  +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           G  +        A+    HA +L+P++ A    LA
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 11/124 (8%), Positives = 29/124 (23%), Gaps = 21/124 (16%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLN---------------GTSATYYSNRAAAYLELGCF 539
              +       N A+      +                          +    +     +
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ------NKAA 593
           ++        + ++  + + +   G        Y+ A  + + A+ L P          A
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214

Query: 594 NLAE 597
            LA 
Sbjct: 215 TLAN 218

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 15/99 (15%), Positives = 44/99 (44%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G       ++N+A++ ++ A+ +     + ++   A        ++A E  ++ + +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             +++    G +   L  Y EA+ +F  A+ L+ +++  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 3/144 (2%)

Query: 452 DKFLLDTVLDLYDSLQEQVNIASNLVPLP--DTNGSIDASELLKEKGNAAFKGKQWNKAV 509
           ++      +      Q QV ++++         N   D      E+G    K       +
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGDLPVTI 85

Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569
            +   AI  +   A  +        E    Q A     + + L   N+KA +    +   
Sbjct: 86  LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145

Query: 570 LFCYNEALQDFKHAMVLEPQNKAA 593
                +A +  K+ +   P+ K  
Sbjct: 146 TSHQQDACEALKNWIKQNPKYKYL 169

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +E  +  G    + +    A+      ++L   +       A +Y      Q A E  
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL 156

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ-NKAANL 595
              I  + K       +  +       +++  D      ++    +AA+ 
Sbjct: 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEED 545
           +  L +    +             Y EA   NG        +     +   G F +A + 
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            +  +++  ++   + R G          EA++ +  A+ ++P    +  NL 
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G     G +  +AV  Y+ A+++         N   + + LG +++A  +    +SL +
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
           K+         A              + A+ L  Q +    A   
Sbjct: 313 KSRNQQQVPHPAI-----SGNIWAALRIALSLMDQPELFQAANLG 352

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 18/121 (14%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
              +         A       IK N        N+  +        ++  D S    + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 555 KNVKAYLRRGTAREALFCYN------------EALQDFKHAMVLEPQ------NKAANLA 596
             ++A  + G   +                   A+  F  A+ + P+         A LA
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258

Query: 597 E 597
            
Sbjct: 259 N 259

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 1/97 (1%)

Query: 495 KGNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G      G +   A  Y S+A  L  T    +     ++       QA         L 
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
           K      L  G           A + F  A+ + P++
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCF 539
             ++ E G  AF+  +W  A  ++ +A++                  +N      +L  +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
            +A +   + + L  +N   Y   G     +  +  A+  F  A+ L   +  +   L  
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 20/103 (19%), Positives = 42/103 (40%)

Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
            + +         LL   G+   K K++ +A++Y+ +A+ L   +A+ YS     +  +G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284

Query: 538 CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
            F+ A +     + L + +  +    G   E     +EA    
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 11/113 (9%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G           A  ++S+A+ +                + G ++ AE+     +   K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 555 ---------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
                    K        G     L  Y EAL   + A+VL PQN +    + 
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG 277

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 15/104 (14%), Positives = 32/104 (30%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G++     + ++A+  Y  A +L              Y      + AE   S+ +S+  
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
           ++       G        +  A + F  A+            +K
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 1/105 (0%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSK 548
             L        +  + N+      + + L  ++   +      YL +G   + A    SK
Sbjct: 57  SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116

Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             +L+K    A++  G +      +++A+  +  A  L       
Sbjct: 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 1/108 (0%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +  +++       +    +       S  ++ +   A+         +EL    +     
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS 79

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNE-ALQDFKHAMVLEPQNKAA 593
            K + L   N  ++   G     +   NE A +    A  LE     A
Sbjct: 80  HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 11/81 (13%), Positives = 21/81 (25%)

Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA 569
               E++     +     + A  +     F+   +  S  +  D  +             
Sbjct: 9   TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 570 LFCYNEALQDFKHAMVLEPQN 590
           L   NE        + L P N
Sbjct: 69  LNKANELFYLSHKLVDLYPSN 89

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 74.3 bits (182), Expect = 7e-14
 Identities = 17/107 (15%), Positives = 28/107 (26%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A    G  ++AL      L     A  L P    A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.1 bits (179), Expect = 1e-13
 Identities = 14/104 (13%), Positives = 25/104 (24%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQA 252

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L    V A       ++AL      L     A  L P    A
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 72.4 bits (177), Expect = 2e-13
 Identities = 15/104 (14%), Positives = 26/104 (25%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA 286

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L    V A    G  ++AL      L     A  L P    A
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 72.0 bits (176), Expect = 3e-13
 Identities = 14/104 (13%), Positives = 27/104 (25%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 693

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             L ++ V A       ++AL      L     A  L P    A
Sbjct: 694 HGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.8 bits (173), Expect = 6e-13
 Identities = 15/107 (14%), Positives = 26/107 (24%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +          +   + +    +A  L        ++       L   Q+     
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A       ++AL      L     A  L P    A
Sbjct: 318 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 16/107 (14%), Positives = 27/107 (25%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A       ++AL      L     A  L P    A
Sbjct: 623 CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 5e-12
 Identities = 14/102 (13%), Positives = 26/102 (25%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           +          +   + +    +A  L        ++       L   Q+      +   
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661

Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           L    V A    G  ++AL      L     A  L  +   A
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 5e-12
 Identities = 17/107 (15%), Positives = 28/107 (26%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A    G  ++AL      L     A  L P    A
Sbjct: 725 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 5e-12
 Identities = 15/109 (13%), Positives = 26/109 (23%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
           + D    +              + +    +A  L        ++       L   Q+   
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
              +   L    V A    G  ++AL      L     A  L      A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.6 bits (162), Expect = 2e-11
 Identities = 16/107 (14%), Positives = 28/107 (26%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L +  V A       ++AL      L     A  L P    A
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.2 bits (161), Expect = 2e-11
 Identities = 15/107 (14%), Positives = 26/107 (24%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +          +   + +    +A  L        ++       L   Q+     
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVL 520

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A    G  ++AL      L     A  L P    A
Sbjct: 521 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.4 bits (159), Expect = 3e-11
 Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 1/107 (0%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +          +   + +    +A  L        ++       L   Q+     
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A    G  + AL      L     A  L P    A
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 4e-11
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 1/107 (0%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A       ++AL      L        L P    A
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 15/107 (14%), Positives = 25/107 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +          +   + +    +   L        ++       L   QQ     
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A       ++AL      L     A  L P    A
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 15/90 (16%), Positives = 25/90 (27%)

Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
              + +    +A  L        ++       L   Q+      +T  L    V A    
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469

Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA 593
              ++AL    + L     A  L P    A
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVA 499

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 7e-10
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 2/90 (2%)

Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
               A+      + L        ++       L   Q+      +   L    V A    
Sbjct: 175 ASRNAL--TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 232

Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA 593
              ++AL      L     A  L P    A
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVA 262

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 8e-10
 Identities = 12/107 (11%), Positives = 24/107 (22%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    +          +   + +    +A  L        ++       L   Q+     
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 758

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            +   L    V A       ++AL      L        L      A
Sbjct: 759 CQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 13/98 (13%), Positives = 24/98 (24%)

Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565
            + +    +A  L        ++       L   Q+      +   L    V A      
Sbjct: 820 QRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIG 879

Query: 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
            ++AL      L        L      A  +    + L
Sbjct: 880 GKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL 917

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 15/119 (12%), Positives = 30/119 (25%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605
            +   L    V A       ++AL      L     A  L      A  +    ++ + 
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 3/86 (3%)

Query: 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567
            V      + L+   A   +    A   L   Q+      +   L    V A       +
Sbjct: 892 PVLCQDHGLTLDQVVAIASNGGKQA---LETVQRLLPVLCQDHGLTPDQVVAIASNSGGK 948

Query: 568 EALFCYNEALQDFKHAMVLEPQNKAA 593
           +AL      L        L P    A
Sbjct: 949 QALETVQRLLPVLCQDHGLTPNQVVA 974

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 12/102 (11%), Positives = 24/102 (23%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           +          +   + +    +   L        ++       L   Q+      +   
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831

Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           L +  V A       ++AL      L        L P    A
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVA 873

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 13/87 (14%), Positives = 21/87 (24%)

Query: 507 KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA 566
            A       ++L+       + R                    ++L    V A       
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 567 REALFCYNEALQDFKHAMVLEPQNKAA 593
           ++AL      L     A  L P    A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVA 228

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 3/101 (2%)

Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565
                     +     +          Y E   F  A       +  D     A+   G 
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 566 AREALFCYNEALQDFKHAMVLEPQN---KAANLAEKRLRKL 603
             +       A Q ++  +         +     +  LR+L
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-- 553
           G    + +Q++ A+ +   A+  + T +  +          G    A +     ++    
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 554 ------KKNVKAYLRRGTAREALFCYN 574
                  K ++ +LRR    +AL  ++
Sbjct: 86  RGDQQVVKELQVFLRRLAREDALEHHH 112

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
            L ++  +         +A++   +A ++N   A  +  R   Y  LG   +AE    + 
Sbjct: 85  ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           ++L +   +          ++   +EAL  +  A+   P++       A
Sbjct: 145 LAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G   +   +++ A+  +  A+K N          A   L+LG    A E+    ++   
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 555 KNVKAYLRRGTAREALFC-----------YNEALQDFKHAMVLEPQNKAA--NL--AEKR 599
           + +  Y+    A  AL+              +AL   K A  + P+              
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130

Query: 600 LRKL 603
           L + 
Sbjct: 131 LGER 134

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G       + +KA     +A+ L   +    S  A  YL +G   +A    +K +    
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFK 581
           K++   +R  +A        EA +   
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAA 209

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDF 580
           T+             LG +  A     + +  + ++ +A       +  L   N AL++ 
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 581 KHAMVLEPQNKAA--NLA 596
           K  +   P+       L+
Sbjct: 63  KTLVARTPRYLGGYMVLS 80

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                    + ++A+  Y++A++            A+A L  G  ++A    +      
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.4 bits (174), Expect = 4e-13
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 2/103 (1%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
            +   +  +  +A+ +Y EAI+++ T A  YSN      E+   Q A +  ++ I ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
              A+    +  +      EA+  ++ A+ L+P    A  NLA
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
            N   +     +AV  Y +A+++    A  +SN A+   + G  Q+A     + I +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE--KRLRKL 603
              AY   G   + +     ALQ +  A+ + P    A  NLA   K    +
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 18/108 (16%), Positives = 39/108 (36%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             ++     GN   + +    A+  Y+ AI++N   A  +SN A+ + + G   +A    
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN 594
              + L      AY       + +  + +  +  K  + +       N
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 26/69 (37%)

Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
            A   +N A    E G  ++A     K + +  +   A+    +  +      EAL  +K
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 582 HAMVLEPQN 590
            A+ + P  
Sbjct: 68  EAIRISPTF 76

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 1/111 (0%)

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           N   D  +   E+G    +      AV  +  A++ +      +        E      A
Sbjct: 59  NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
                + + L   N  A +    +        +A +  +  +   P     
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 14/99 (14%), Positives = 41/99 (41%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G       +++KAV+ ++ A+ +       ++   A        ++A     + + L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
             +++    G +   L  + EA++ F  A+ ++ +++  
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
              +      + +    +  A++L+ TS            +   G + +A +  +  +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
              +   + + G          EA+  ++ A+ L+P    +  NL 
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 18/107 (16%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G     G Q  +AV  Y  A++L         N   + + LG  ++A E   + +++ +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316

Query: 555 KNVKAYLRRGTAR------------------EALFCYNEALQDFKHA 583
           K+       G                              L      
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 15/114 (13%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    + +Q   A++     ++L   + T     A ++      +QA E     +    
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 555 KNVKAYLRRGTAREALFC---------------YNEALQDFKHAMVLEPQNKAA 593
                                            + E  + F  A+ L+P +   
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 88/567 (15%), Positives = 172/567 (30%), Gaps = 179/567 (31%)

Query: 172 DFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS-----LDTVGLLARNASI 226
            F    D   C  V      IL    S   +  I +  ++ S       T  LL++   +
Sbjct: 28  AFVDNFD---CKDVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEM 78

Query: 227 LHRVGHVLLQLN--------AVEPRR----------ARRLIFAD-DIFQLSKVPKLKTIH 267
           + +    +L++N          E R+           R  ++ D  +F    V +L+   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL--KALSSVMLSL 325
            + +A+  L            + +   +  + G          G   +      S  +  
Sbjct: 139 KLRQALLELR---------PAKNVL--IDGVLGS---------GKTWVALDVCLSYKV-Q 177

Query: 326 QRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVR-----------NEM 374
            + +FK I+  W+         N  E VLE +      I   +  R           + +
Sbjct: 178 CKMDFK-IF--WLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 375 RAALQRLLK-----------DD--------------KILVI---PTVSDPPLKLNTKKTY 406
           +A L+RLLK            +              KIL+      V+D  L   T    
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHI 289

Query: 407 SAEFHDRTL-------VLSSIGSMSG------CCQVAIP-----IGK-YNEHPISISFIT 447
           S + H  TL       +L                    P     I +   +   +     
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWK 348

Query: 448 YHGGDKF--LLDTVLD---------LYDSL---QEQVNIASNLVPL-----PDTNGSIDA 488
           +   DK   ++++ L+         ++D L       +I + L+ L       ++  +  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 489 SELLK----EKGNAAF-----------KGKQWNKA------VNYYS--EAIKLNGTSATY 525
           ++L K    EK                K K  N+       V++Y+  +    +     Y
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 526 YSNRAAAYL--ELGCFQQAEE-DCSKTISLDKKNVKAYLRR-GTAREALFCYNEALQDFK 581
                 +++   L   +  E     + + LD + ++  +R   TA  A       LQ  K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 582 ----HAMVLEPQNKAANLAEKRLRKLI 604
               +    +P+       E+ +  ++
Sbjct: 529 FYKPYICDNDPKY------ERLVNAIL 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 80/602 (13%), Positives = 161/602 (26%), Gaps = 168/602 (27%)

Query: 31  LAETLRRR-RNPKLNGRVDFGAFLERFELIPFPQPPPPAAR-QPLAGLKFAIKDVFDVKG 88
           L   ++   R P +     +    +R             +R QP   L+ A+ ++     
Sbjct: 94  LMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAK 151

Query: 89  YVT-----GFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYG 143
            V      G G    K        T V +         C+   V  +  F I      + 
Sbjct: 152 NVLIDGVLGSG----K--------TWVAL-------DVCLSYKVQCKMDFKI-----FW- 186

Query: 144 TPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVS 203
                     +   + + S   V   L             ++  ++      R  H +  
Sbjct: 187 ----------LNLKNCN-SPETVLEMLQKL--------LYQIDPNWTS----RSDHSS-- 221

Query: 204 MIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV-EPR-------RARRLIFADDIF 255
                     + ++    R         + LL L  V   +         + L+      
Sbjct: 222 -----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEHMNV-GQYIASNVPSLKGLRAQSTSPENGTAT 314
               +    T H+              E  ++  +Y+      L      +T+P      
Sbjct: 277 VTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP------ 327

Query: 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT------------QD 362
            + LS +  S++  +    ++ W      +L   + E  L  +                 
Sbjct: 328 -RRLSIIAESIR--DGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 363 NIKILYKV---------RNEMRAALQRLLK--------DDKILVIPTVSDPPLKLNTKKT 405
           +  I   +         ++++   + +L K         +  + IP++    L+L  K  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLE 440

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQ---VAIPIGKYNEHPISISFITYH-----GGDKFLL- 456
                H    ++              +   + +Y       S I +H       ++  L 
Sbjct: 441 NEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLF 493

Query: 457 -DTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA 515
               LD    L++++   S        N S      L++              + +Y   
Sbjct: 494 RMVFLDF-RFLEQKIRHDS-----TAWNASGSILNTLQQ--------------LKFYKPY 533

Query: 516 IKLNGTSATYYSNRAAAYLELGCF-QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN 574
           I  N      Y     A L+   F  + EE+   +   D       LR     E    + 
Sbjct: 534 ICDN---DPKYERLVNAILD---FLPKIEENLICSKYTD------LLRIALMAEDEAIFE 581

Query: 575 EA 576
           EA
Sbjct: 582 EA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 49/441 (11%), Positives = 116/441 (26%), Gaps = 132/441 (29%)

Query: 14  NPKVWVVI-GVSVVGFVVLA-ETLRRRRNPKLNGRVDFGAF------LERFELIPFPQPP 65
            P   V+I GV   G   +A +      + K+  ++DF  F          E +      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVL----- 199

Query: 66  PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCI-- 123
                + L  L + I        + +        +    + +  +   L  K    C+  
Sbjct: 200 -----EMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 124 -----GKTVLDEFAFG----ITGENKHYGTPVNPQMPSHIP-----GGSSSGSAVAVAAQ 169
                     + F       +T   K     ++    +HI         +     ++  +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 170 LVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL----PN-SQSLDTVGLLARNA 224
            +D            +P          P    +S+I            +   V     N 
Sbjct: 310 YLD-------CRPQDLPREVLTTN---PRR--LSIIAESIRDGLATWDNWKHV-----NC 352

Query: 225 SILHRVGHVLLQLNAVEPRRARRL-----IFADDIFQLSKVPKLKTIHVISKAIESL--- 276
             L  +  +   LN +EP   R++     +F         +P        +  +  +   
Sbjct: 353 DKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSA----HIP--------TILLSLIWFD 398

Query: 277 SGYQNPEHMNVGQYIASNVPSLKGLRAQS---TSPENGTATLKALSSVMLS--------- 324
               +   +            +  L   S     P+  T ++ ++   +           
Sbjct: 399 VIKSDVMVV------------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 325 ---LQRYEFKTIYEEWVKSAKPRLGYNVFERV---LEAINTTQ--DNIKILY-------- 368
              +  Y     ++           Y  +  +   L+ I   +     ++++        
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 369 KVRNE-----MRAALQRLLKD 384
           K+R++        ++   L+ 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ 526

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 63.4 bits (153), Expect = 4e-12
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------------GTSATYYSNRAAAYLEL 536
           + L            ++++A      A++++            G  A  ++  A A   L
Sbjct: 11  AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70

Query: 537 GCFQQAEEDCSKTISLDKKN-----------VKAYLRRGTAREALFCYNEALQDFKHAMV 585
             F +A     K +    +            + A   R  A + L    EA+ +FK  + 
Sbjct: 71  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130

Query: 586 LEPQNKAANLAEKRLRKLI 604
           +  + K     ++R+ ++ 
Sbjct: 131 MIEERKGETPGKERMMEVA 149

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK--GKQWNKAVNYYSEAIKLNG 520
              +Q  V+   ++     +   I++ EL  E+G    K  G Q  +A   + +A++   
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169

Query: 521 TSATYYSNRAAAYLELGCF---QQAEEDCSKTISLDKKNVKAYLRRGTAREALFC----Y 573
            +  + S  A A   L  +   Q A +   + I L+  N    +        +       
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229

Query: 574 NEALQDFKHAMVLEPQNKAA--NLA 596
            E  +  + A+   P       + A
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAA 254

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA--- 559
           +    AV +  +A + N       S  A+ +     +++AE    K  S +   V     
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 560 YLRRGTARE-ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI 604
           +LR G  +   + C ++A+  F   + +  +++     + +L+K+ 
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA 419

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 9/116 (7%)

Query: 490 ELLKEKGNAAFKGKQWNK---AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ----QA 542
           E       A+++   W     A++   +AI+LN  +       A    ++        + 
Sbjct: 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232

Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           E+   + +                       ++A++  K A+   P N      + 
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 21/118 (17%)

Query: 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY 560
           +G++  +      EA++          + A  Y       +A E   K +     N   +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 561 LRRGTA-------------------REALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
            + G                     R+ L     A+   K A             LA 
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 19/129 (14%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----------- 535
             +++L+       +  + +KA+    +A++    +A  +      Y             
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304

Query: 536 --------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
                   L     A     K    +    +      +       Y EA   F+     E
Sbjct: 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364

Query: 588 PQNKAANLA 596
               A  L 
Sbjct: 365 LTPVAKQLL 373

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 13/94 (13%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA 559
           ++ K  +KA++++ E +K+N  S                  + ++     +S +  + +A
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEA 432

Query: 560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
                  +E      +A +D +  +       +A
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 21/122 (17%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDC 546
                   Q   A+    +A +L            S   + N A  Y  +G     +   
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117

Query: 547 SKTISLDKKNVKA--------YLRRGTAREALFC--YNEALQDFKHAMVLEPQNKAA--N 594
            K   + +K                G  R          A   F+ A+  +P+N      
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 595 LA 596
           LA
Sbjct: 178 LA 179

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
              + +     A++        +   A A L +G     E    + ++L   + +A  R 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
           G  R     + EA    + A    P++      L 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 14/117 (11%), Positives = 24/117 (20%), Gaps = 2/117 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                     +A                 + L+       +             +A    
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAEKRLR 601
            +      ++    L  G A E       A   +  A  L P+       L   R R
Sbjct: 81  QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 12/107 (11%), Positives = 25/107 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
              E +   G   +  ++  +A     +A                A  + G  + A    
Sbjct: 55  GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           ++   L  +      +    R  L  +               Q   A
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 501 KGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK 558
           +  +  +++ Y+ +A+      T      N+     + G F  AE    ++++   +   
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

Query: 559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAEKRLRKL 603
           A+      +       +A   FK         +A    L  K  + L
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             S +  +      +G+ + +A     +A+K +  +   +  RA  Y  L    +A+E  
Sbjct: 6   QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 547 SKTISLDKKNVKAYLRRGTA--------REALFCYNEALQD 579
            + +S+   + +     G           E++  +++AL D
Sbjct: 66  RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFK 581
            +   +  A  Y+    ++QA       +  D KN  A+L R    + L   ++A + F+
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 582 HAMVLEPQNKAAN 594
            A+ ++P +   N
Sbjct: 67  QALSIKPDSAEIN 79

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           KG  + K  Q+  A  Y   ++         +   A   +  G    A+    K  S  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
                 L  G           A   +++   L+ 
Sbjct: 179 VLQADDLLLGWKIAKA--LGNAQAAYEYEAQLQA 210

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.9 bits (155), Expect = 7e-11
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCS 547
            L    N     K   +A++ Y++A K++  +++    + NRA  +     + +A E  S
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282

Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL 600
           +  +LD    +   R     E L      L+        + Q+   +L    L
Sbjct: 283 QAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 487 DASELLKEKGNA-AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
             ++ L  KG A         +A    S+A+KL       ++     Y + G    A   
Sbjct: 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159

Query: 546 CSKTISLDKK--------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN-KAAN 594
            S  ++  K          V   L+  +  E      ++++  K A+ ++  + ++  
Sbjct: 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL--------ELGCFQQAEED 545
           +  +     +    +V     A++++      +     AYL             QQA   
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 546 CSKTISLDKK---NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            ++   +D+K   N   +L R T  +    Y EAL+ F  A  L+P     
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 8/129 (6%)

Query: 473 ASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYSNRAA 531
           +S LVP      S+   + +      A + ++    +      +  L     +Y+   + 
Sbjct: 11  SSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSV 70

Query: 532 AYLE------LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN-EALQDFKHAM 584
                         ++  +   + +   +   +A + +G A      Y+ EA      A+
Sbjct: 71  EDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV 130

Query: 585 VLEPQNKAA 593
            LEP+   A
Sbjct: 131 KLEPELVEA 139

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 14/96 (14%), Positives = 30/96 (31%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           E+G +  K     +A   +    +        + +      E      A    +    LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
            K++  +     +       N AL   +  ++ +PQ
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
               + L+L    +A          + +  +A+   G  +        A+    HA +L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 588 PQNKAA--NLA 596
           P++ A    LA
Sbjct: 82  PKDIAVHAALA 92

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556
           ++    +  +       +  K    +   Y      YL+ G  +QA+    K + +D  +
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70

Query: 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
             A+       +       A ++++ A+  + +N     N  
Sbjct: 71  ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 18/97 (18%), Positives = 39/97 (40%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +A +   + G    +     +A     +A++++ +SA  ++  A  +      + A+E+ 
Sbjct: 35  EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA 583
            K ++ D +N +     G        Y EA Q    A
Sbjct: 95  RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           G   ++ K++ +A     EA +  L    +  + N     L++    QA+E   K++ L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           +      L           Y  A Q +        QN  +
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI--SLD 553
                   +   A   Y +A+  +  +A   +N      E   +++A +   +    +L 
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
            +  + +   G     +    +A + F+ ++ L     +    +A+
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 13/98 (13%), Positives = 32/98 (32%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           G  + + K+  +A  Y+ ++++LN    +     A    +   +  A +          +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
           N ++ L      +     + A         L P +   
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E   K + LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 555 KNVKAYLRRGTAREAL 570
            N +A    G A++  
Sbjct: 75  NNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV 585
           + N   AY + G + +A E   K + LD  N +A+   G A      Y+EA++ ++ A+ 
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 586 LEPQNKAA--NL 595
           L+P N  A  NL
Sbjct: 72  LDPNNAEAKQNL 83

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 57.4 bits (138), Expect = 6e-09
 Identities = 16/89 (17%), Positives = 34/89 (38%)

Query: 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL 561
            K  ++ +NY +  I+    +   + +R      L    Q  E  +  ++ D KN  A+ 
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204

Query: 562 RRGTAREALFCYNEALQDFKHAMVLEPQN 590
            R    +    ++  LQ     +  + +N
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 474 SNLVPLPDTNG-----SI----DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
           +++ P+P  +G      I       ++         + ++  +A     +AI+LN  + T
Sbjct: 73  ADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT 132

Query: 525 YYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA 583
            +  R      L     +     +  I    KN + +  R    E L   ++ L+     
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192

Query: 584 MVLEPQN 590
           +  + +N
Sbjct: 193 LNQDAKN 199

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 11/105 (10%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE------EDCSK 548
           +     + K W+  + Y  + +K +  + + ++ R         +          +   +
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA 593
            I L   N  A+       +     ++        + L+P + + 
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSP 309

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 507 KAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
           +AV YY +AI            Y    + +  LG +++AE   +  +     +    +  
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKA 592
                 L  Y + ++     +     ++ 
Sbjct: 68  AMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--D 553
           G+      ++ KA    +  +K            A     LG ++Q  E   K I+   D
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 554 KKNVKAYLRRGTAREALFCYNEAL 577
            + +++Y      ++A+  Y + L
Sbjct: 94  DETIQSY------KQAILFYADKL 111

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           +             A+    E ++         Y     AY +LG +Q+A  +    I L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 553 DKKNVKAYLRRGTAREALFCYNEAL 577
           +  +     R+    + L  YN+ +
Sbjct: 65  NPDSPALQARKMVM-DILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNV-KAYLRRGTAREALFCYNEALQDFKHAMVL 586
                 +  G  + A +   + +  +     +AY   G A   L  + +AL +++ A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 587 EPQNKAANLAEKRLRKLIG 605
            P + A   A K +  ++ 
Sbjct: 65  NPDSPALQ-ARKMVMDILN 82

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISL 552
           G        ++ ++  Y +A++L G +A  Y+  A             Q      K ++L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN-------KAANLAEKRLRK 602
           D   + A +   +       Y +A++ ++  M L           ++ N+A+   R+
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRR 167

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
                  A  +L+     +A     + +  D   V  Y   G   E L   ++A+  +  
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66

Query: 583 AMVLEPQN---KAANLAEKRLRKLIG 605
            + +  +    K  +  +    K  G
Sbjct: 67  GIEVAREEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
                K    ++A+  + E ++ +      Y +    Y  L     A +  ++ I + ++
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHA 583
                       E      +  +  +H 
Sbjct: 74  EGTQK----DLSELQDAKLK-AEGLEHH 96

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 499 AFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN 556
               KQ           + L      +  Y  +A + L  G   ++ +  +  I L+  +
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-S 309

Query: 557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
              Y+  G   E      EA   +  A  L P        E
Sbjct: 310 WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 24/136 (17%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
           +A++L  +        K+ N A + + +A      +         Y      +   G   
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94

Query: 541 QAEEDCSKTISLDKKNVK--------------AYLRRGTAREALFCYNEALQDFK----H 582
            A +     I +     +                       +A+ CY  A + +      
Sbjct: 95  NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154

Query: 583 AMVLEPQNKAANLAEK 598
           A+  +   K A+L   
Sbjct: 155 ALSNKCFIKCADLKAL 170

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQ 540
            A+    +   A    KQ  +A + Y +  + +        +A  +        +L    
Sbjct: 34  SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93

Query: 541 QAEEDCSKTISLDKKNVK------------AYLRRGTAREALFCYNEALQDF----KHAM 584
           +A +   K   +  +N                +      +A+  Y +A   F    +   
Sbjct: 94  EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQ 153

Query: 585 VLEPQNKAANLAEK 598
             E   KA+ L  +
Sbjct: 154 AAELIGKASRLLVR 167

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLEL 536
           NG+ D + +  ++     +    +KAV+ Y +A  +         +A      +   +  
Sbjct: 109 NGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ 168

Query: 537 GCFQQAEEDCSKTISLDKKN-------------VKAYLRRGTAREALFCYNEALQD 579
             F +A     K  S+ K+              V   L R     A  C  E+   
Sbjct: 169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCS 547
           L  +G    K       V+++  A+++        +  YS    AY  L  + +A E   
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71

Query: 548 KTISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
             ++L     D+                 G   EA+ C    L 
Sbjct: 72  HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           GN  +    +  AV  + + + +             YSN   AY+ LG F+ A E   KT
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253

Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
           + L     D+             Y       +A+  + + L 
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 4/106 (3%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISL 552
                 K  + + A     +    +  +       A   L  G    Q A     +    
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195

Query: 553 DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
               +     +     A   +  A    + A+  +  +     NL 
Sbjct: 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 20/106 (18%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           G        W+ A   + E  +L          ++      A   L  G    A ++  K
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 549 TISL-----DKKNV--------KAYLRRGTAREALFCYNEALQDFK 581
           ++       D+  +            +     EA   +  A   F 
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCF 539
           GS    EL  E G    K       V+++  A+++        +  YS    AY  L  +
Sbjct: 1   GSASCLELALE-GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59

Query: 540 QQAEEDCSKTISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
            +A E     ++L     D+                 G   EA+ C    L 
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           GN  +    +  AV  + + + +             YSN   AY+ LG F+ A E   KT
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249

Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
           + L     D+             Y       +A+  + + L 
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 20/124 (16%)

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
           L      I+ +E   +   + +  KQ   +++Y  +A ++       N      +S  A 
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192

Query: 532 AYLELGCFQQAEEDCSKTISLDKK------------NV-KAYLRRGTAREALFCYNEALQ 578
            +L+L  ++ A     K  S+ +             N+      +    +A+  +  A+ 
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252

Query: 579 DFKH 582
            F+ 
Sbjct: 253 VFEE 256

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 9/107 (8%), Positives = 32/107 (29%), Gaps = 20/107 (18%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEE---- 544
           +G      +++  A+ ++ +A             A ++   + +Y  +     + +    
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

Query: 545 --DCSKTISLDKKNV--------KAYLRRGTAREALFCYNEALQDFK 581
             +  K        +          +L      +A+  + +A    +
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 9/102 (8%), Positives = 32/102 (31%), Gaps = 19/102 (18%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
                  KQ+  A++++ +A  +               N          ++ A     + 
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 550 ISLDKKN-------------VKAYLRRGTAREALFCYNEALQ 578
           I++ +++              + + + G   +A   +++ + 
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           G            V ++  AI+         +  YS    AY  LG + +A +     ++
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114

Query: 552 L-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
           L     D+                 G   EA  C    L 
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 8/92 (8%), Positives = 20/92 (21%), Gaps = 17/92 (18%)

Query: 504 QWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV 557
                 N +    +         +     +         G  +         I    +++
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82

Query: 558 K-----------AYLRRGTAREALFCYNEALQ 578
           +           AY   G   +A+  +   L 
Sbjct: 83  RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 19/102 (18%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           GN  +    +  A+ ++ E +++              SN   +++ LG F+ A E   +T
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289

Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQ 578
           ++L     +++            Y        A+  +N  L 
Sbjct: 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 28/143 (19%)

Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI-----DASELLKEKGNAAFKGKQWNKAVNYYSE 514
           L L   L ++++    L  L    G++                     +   +AV +Y E
Sbjct: 153 LTLARQLGDRLSEGRALYNL----GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208

Query: 515 AIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKNV------ 557
            +KL       G       N    Y  LG FQ A E   + + +     D+         
Sbjct: 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN 268

Query: 558 --KAYLRRGTAREALFCYNEALQ 578
              +++  G   +A   Y   L 
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLA 291

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 20/124 (16%)

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
           LP  +  I+ +E   +   A +  KQ + ++ +  +A+ +       +  +       A 
Sbjct: 131 LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190

Query: 532 AYLELGCFQQAEEDCSKTISLDKK------------NV-KAYLRRGTAREALFCYNEALQ 578
            Y +   + +A       + L               N+  +Y R G  + A+  + +A +
Sbjct: 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250

Query: 579 DFKH 582
             + 
Sbjct: 251 VSRE 254

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 20/139 (14%)

Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522
           Y +      +   +         +     L  +G   F  K++ +A+ YY EA K     
Sbjct: 75  YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134

Query: 523 ------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK--------------AYLR 562
                 A ++   A AY  +     +     + + + + +                 Y  
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 563 RGTAREALFCYNEALQDFK 581
                +AL     AL+   
Sbjct: 195 FKHYDKALPHLEAALELAM 213

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 18/120 (15%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
                  K ++KA+ +   A++L          A    N A +Y   G  Q A E   K 
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 550 ISLDKKN------------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE 597
             + ++                  + G  ++A     E L           +     L  
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 19/105 (18%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
           GNA     ++  A  YY + + L          A    +    Y  L  +++A +   K 
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

Query: 550 ISL-----DKKNV--------KAYLRRGTAREALFCYNEALQDFK 581
           +++     D+            AY   G   +A+    + L+  +
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 435 KYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKE 494
           K   HP    F+ +       +   +D    + E   + +  +   D   ++        
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI---ENA 160

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCS 547
             N   +     K ++ + + +K                 N A A      ++++    +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220

Query: 548 KTISLDKKN------VKAYLRRGTAREALFCYNEALQD-FKHAMVLEPQNKAANLAEKRL 600
           K I +  +        + Y +RG     L      ++D +K A       +     E  +
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALV 280

Query: 601 RKL 603
            K+
Sbjct: 281 NKI 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	605
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.66
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.66
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.66
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.59
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.56
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.48
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.37
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.33
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.32
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.31
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.31
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.3
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.3
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.29
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.29
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.26
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.24
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.23
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.2
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.09
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.08
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.03
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.02
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.02
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.01
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.01
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.0
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.98
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.98
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.97
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.97
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.96
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.96
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.95
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.95
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.94
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.94
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.93
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.92
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.92
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.91
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.87
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.87
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.85
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.84
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.83
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.83
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.81
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.8
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.8
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.8
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.8
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.79
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.78
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.78
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.74
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.7
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.69
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.66
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.62
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.54
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.53
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.51
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.37
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.35
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.33
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.29
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.24
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.08
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.91
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.82
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.65
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.57
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.54
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.47
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.33
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.3
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.24
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.08
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.84
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.17
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.69
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.69
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.6
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.47
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.28
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.82
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.11
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.93
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.6
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.45
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.01
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.83
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.42
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.96
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.4
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.4

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-91  Score=736.81  Aligned_cols=406  Identities=28%  Similarity=0.331  Sum_probs=342.7

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~   99 (605)
                      +.+|++|+++.+++||++.|| +|||++..+++++++|+       .++..||||||||+|||||+++|++||+||+.| 
T Consensus        13 g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~-   90 (434)
T 2dc0_A           13 GRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP-   90 (434)
T ss_dssp             TSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC-
T ss_pred             CCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc-
Confidence            449999999999999999999 99999998877766553       355679999999999999999999999999998 


Q ss_pred             hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCC
Q 007401          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT  179 (605)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~  179 (605)
                      .  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+||||
T Consensus        91 ~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDt  168 (434)
T 2dc0_A           91 L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT  168 (434)
T ss_dssp             C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECS
T ss_pred             C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCC
Confidence            3  44489999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc--ccCceeeeccchhhh
Q 007401          180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--RRARRLIFADDIFQL  257 (605)
Q Consensus       180 gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~  257 (605)
                      |||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+. ..++  ..+.++.+..+.+. 
T Consensus       169 gGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~lrig~~~~~~~-  246 (434)
T 2dc0_A          169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNPVFGVPLDFLE-  246 (434)
T ss_dssp             SSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSCEEEECHHHHT-
T ss_pred             ChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCCEEEEECcccc-
Confidence            9999999999999999999999999999999999999999999999999999999876 3332  23346666554431 


Q ss_pred             cCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHH
Q 007401          258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEE  336 (605)
Q Consensus       258 ~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~  336 (605)
                       ...++++.++++++++.|+..+        +.|++ ..| +.+.                 ...+..+...|....+..
T Consensus       247 -~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p-~~~~-----------------~~~~~~~~~~e~~~~~~~  299 (434)
T 2dc0_A          247 -GRLGVEVRKAFTRLLEDLPALR--------AEVREVSLP-LEGV-----------------YEVYTRLVRYEAARIHEK  299 (434)
T ss_dssp             -TCSCHHHHHHHHHHHHHTTTTT--------CEEEECCCC-CTTH-----------------HHHHHHHHHHHHHHHSHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCC-cHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence             2346789999999999996433        33322 223 2211                 111222334455556666


Q ss_pred             HHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCccccc---c-hhhhh
Q 007401          337 WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY---S-AEFHD  412 (605)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~---~-~~~~~  412 (605)
                      ++......++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||++++....   . .....
T Consensus       300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~  379 (434)
T 2dc0_A          300 ALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHRE  379 (434)
T ss_dssp             HHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHH
T ss_pred             HHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhh
Confidence            6666667799999999999999999999999999999999999999999999999999999999864211   0 11112


Q ss_pred             chhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          413 RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       413 ~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      .+..||.++|++|+|++|||+|+.+|+|+|+|+++++++|..+++++..+++.
T Consensus       380 ~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  432 (434)
T 2dc0_A          380 AFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR  432 (434)
T ss_dssp             HHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence            33568999999999999999999899999999999999999999999988763

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=2.9e-90  Score=737.50  Aligned_cols=424  Identities=23%  Similarity=0.305  Sum_probs=333.4

Q ss_pred             HHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC--------CCCCCCCCCCceEEEeeccCC
Q 007401           20 VIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP--------PPAARQPLAGLKFAIKDVFDV   86 (605)
Q Consensus        20 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~--------~~~~~gpL~Gvp~~vKD~~~~   86 (605)
                      .|+++|+++     +|++|+++.+++||++.||.+|||++.++++++++|+        .++. ||||||||+|||||++
T Consensus         6 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v   84 (485)
T 3ip4_A            6 ESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIIT   84 (485)
T ss_dssp             CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCB
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCccc
Confidence            356666644     9999999999999999999999999998877665542        3445 9999999999999999


Q ss_pred             CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHH
Q 007401           87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV  166 (605)
Q Consensus        87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV  166 (605)
                      +|++||+||+.+.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||||
T Consensus        85 ~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaV  162 (485)
T 3ip4_A           85 NGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAV  162 (485)
T ss_dssp             TTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHH
T ss_pred             CCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHh
Confidence            99999999999875  6788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----
Q 007401          167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----  242 (605)
Q Consensus       167 Aag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----  242 (605)
                      |+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++    
T Consensus       163 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~  242 (485)
T 3ip4_A          163 AAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP  242 (485)
T ss_dssp             HTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCC
T ss_pred             hcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987543221    


Q ss_pred             -------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCC
Q 007401          243 -------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSP  308 (605)
Q Consensus       243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~  308 (605)
                                   ..+.|+.+..+.+.  ...++++.++++++++.|+..+        +.|+ ..+|.+.+....+   
T Consensus       243 ~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~~~~~~~~---  309 (485)
T 3ip4_A          243 VDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLG--------AVVEEVSLPNTKFGIPSY---  309 (485)
T ss_dssp             CCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHHHH---
T ss_pred             cCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCcHHHHHHHH---
Confidence                         12345666555432  2346789999999999986332        2222 2233322111100   


Q ss_pred             CCchhHHHHHHHHHHHhhhhh----------hHhhHHHHHHhcCCCCChhHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 007401          309 ENGTATLKALSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAIN-----TTQDNIKILYKVRNE  373 (605)
Q Consensus       309 ~~~~~~~~~~~~~~~~l~~~e----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~a~~~r~~  373 (605)
                           ......+....+..+.          ....++.+.......+++.++.++..+..     ....+|.++++.|..
T Consensus       310 -----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~  384 (485)
T 3ip4_A          310 -----YVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTL  384 (485)
T ss_dssp             -----HHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence                 0000011111111100          00011222222234577888887776542     222458899999999


Q ss_pred             HHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCch
Q 007401          374 MRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDK  453 (605)
Q Consensus       374 ~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~  453 (605)
                      +++.+.++|+++|+||+||+|.+||++++......... ....||.++|++|+|++|||+|+.+|+|+|+|+++++++|.
T Consensus       385 ~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~~d~  463 (485)
T 3ip4_A          385 IKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEK  463 (485)
T ss_dssp             HHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHH
T ss_pred             HHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCCCHH
Confidence            99999999999999999999999999986432221111 11248999999999999999999999999999999999999


Q ss_pred             hHHhHHHHHHhH
Q 007401          454 FLLDTVLDLYDS  465 (605)
Q Consensus       454 ~ll~~a~~l~~~  465 (605)
                      .+++++..+++.
T Consensus       464 ~lL~~A~~lE~~  475 (485)
T 3ip4_A          464 TLYRVAYQYETQ  475 (485)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999874

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=1.8e-89  Score=727.51  Aligned_cols=425  Identities=24%  Similarity=0.320  Sum_probs=334.5

Q ss_pred             HHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCC-CCCCCCceEEEeeccCCCCcccCCC
Q 007401           21 IGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAA-RQPLAGLKFAIKDVFDVKGYVTGFG   94 (605)
Q Consensus        21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~-~gpL~Gvp~~vKD~~~~~G~~tt~G   94 (605)
                      |+++|+++     +|++|+++.+++||++.||.+|||++.++++++++|+.... .||||||||+|||||+++|++||+|
T Consensus         6 sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~tt~G   85 (478)
T 3h0l_A            6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCA   85 (478)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBCCTT
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCcCCc
Confidence            45556543     99999999999999999999999999988877665543222 7999999999999999999999999


Q ss_pred             chhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCcee
Q 007401           95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA  174 (605)
Q Consensus        95 s~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a  174 (605)
                      |+.+.+  .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|
T Consensus        86 s~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a  163 (478)
T 3h0l_A           86 SKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS  163 (478)
T ss_dssp             CGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCE
T ss_pred             CHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCcee
Confidence            999875  678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------
Q 007401          175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------  242 (605)
Q Consensus       175 ~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------  242 (605)
                      +|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++            
T Consensus       164 ~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~~~~  243 (478)
T 3h0l_A          164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSE  243 (478)
T ss_dssp             EEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCHHH
T ss_pred             eecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999987543221            


Q ss_pred             -----ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHH
Q 007401          243 -----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLK  316 (605)
Q Consensus       243 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~  316 (605)
                           ..+.||.+..+.+.  ...++++.++++++++.|+..+        +.|+ ..+|.+.+....+        ...
T Consensus       244 ~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G--------~~v~~v~~p~~~~~~~~~--------~~~  305 (478)
T 3h0l_A          244 EVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEG--------FEIKEVSLPHVKYSIPTY--------YII  305 (478)
T ss_dssp             HTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHHHH--------HHH
T ss_pred             hhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCcHHHHHHHH--------HHH
Confidence                 12345666655432  2346789999999999986332        2222 2333332111100        000


Q ss_pred             HHHHHHHHhhhhh----------hHhhHHHHHHhcCCCCChhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHH
Q 007401          317 ALSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAIN-----TTQDNIKILYKVRNEMRAALQRL  381 (605)
Q Consensus       317 ~~~~~~~~l~~~e----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~a~~~r~~~~~~~~~~  381 (605)
                      ...+....+..+.          ....++.+.......+++.++.++..+..     ....+|.++++.|..+++.+.++
T Consensus       306 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~  385 (478)
T 3h0l_A          306 APSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKA  385 (478)
T ss_dssp             HHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            0011111111110          00011222222234578888888876642     22346889999999999999999


Q ss_pred             hCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHH
Q 007401          382 LKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLD  461 (605)
Q Consensus       382 ~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~  461 (605)
                      |+++|+||+||+|.+||++++......... ....||.++|++|+|++|||+|+.+|+|+|+|+++++++|..+++++..
T Consensus       386 ~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~  464 (478)
T 3h0l_A          386 FEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQISYL  464 (478)
T ss_dssp             TTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHH
T ss_pred             HhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence            999999999999999999986432221111 1224899999999999999999999999999999999999999999999


Q ss_pred             HHhHH
Q 007401          462 LYDSL  466 (605)
Q Consensus       462 l~~~~  466 (605)
                      +++..
T Consensus       465 lE~~~  469 (478)
T 3h0l_A          465 WEQKF  469 (478)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            98753

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-89  Score=723.25  Aligned_cols=416  Identities=26%  Similarity=0.355  Sum_probs=332.2

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (605)
                      +.+|++|+++.+++||++.||.+|||++.+ ++++++|+......|||||||+|||||+++|++||+||+.|.+  .++.
T Consensus        13 g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~--~~~~   89 (471)
T 3kfu_E           13 GEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLEN--FVPP   89 (471)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCSTTTT--CCCS
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCHhHcC--CCCC
Confidence            449999999999999999999999999999 8888776654444599999999999999999999999999875  5788


Q ss_pred             CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (605)
Q Consensus       107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P  186 (605)
                      +||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|
T Consensus        90 ~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~P  169 (471)
T 3kfu_E           90 YEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP  169 (471)
T ss_dssp             SCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred             CChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceeee
Q 007401          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF  250 (605)
Q Consensus       187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~  250 (605)
                      |+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++                ..+.|+.+
T Consensus       170 Aa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv  249 (471)
T 3kfu_E          170 AAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGV  249 (471)
T ss_dssp             HHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEE
T ss_pred             hhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhccCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999987543221                12345566


Q ss_pred             ccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhh
Q 007401          251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF  330 (605)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~  330 (605)
                      ..+.+   ...++++.++++++++.|+..+.       +.++...|.+.+....+        ......+....+..+..
T Consensus       250 ~~~~~---~~~~p~v~~a~~~a~~~L~~~G~-------~v~~v~~p~~~~~~~~~--------~~~~~~e~~~~~~~~~~  311 (471)
T 3kfu_E          250 VREAL---AGNSPGVERALEEALKVFRELGL-------SVREVSWPSLPQALAAY--------YILAPAEASSNLARYDG  311 (471)
T ss_dssp             EGGGT---TTCCHHHHHHHHHHHHHHHTTTC-------EEEEECCTTGGGHHHHH--------HHHHHHHHHHHGGGCST
T ss_pred             ECCcc---CCCCHHHHHHHHHHHHHHHHcCC-------eeeeecCccHHHHHHHH--------HHHHHHHHHHHHHHhhh
Confidence            55543   23467899999999999964332       11222334332211100        00001111111111100


Q ss_pred             --------HhhHHHHHHhcCCCCChhHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 007401          331 --------KTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPP  397 (605)
Q Consensus       331 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a  397 (605)
                              ...+.+++...+..+++.++.++..+...     +..+|.++++.|..+++.+.++|+++|+||+||+|.+|
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a  391 (471)
T 3kfu_E          312 TLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPA  391 (471)
T ss_dssp             TTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSC
T ss_pred             hccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCC
Confidence                    01122222222233899998888776433     33589999999999999999999999999999999999


Q ss_pred             ccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          398 LKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       398 p~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      |++++.......+..  ..||.++|++|+|++|||+|+.+|+|+|+|+++++++|..+++++..+++.
T Consensus       392 ~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~  457 (471)
T 3kfu_E          392 FPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEA  457 (471)
T ss_dssp             CBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred             CccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            999864321111221  238999999999999999999889999999999999999999999999864

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=2e-88  Score=707.53  Aligned_cols=394  Identities=24%  Similarity=0.305  Sum_probs=334.0

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (605)
                      +.+|++|+++.+++||++.||.+|||++..++++ +     ...||||||||+|||||+++|++||+||+.|.+  .++.
T Consensus        14 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~   85 (414)
T 1o9p_A           14 GELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRG--WQPR   85 (414)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTT--CCCS
T ss_pred             CCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCCHhhcc--CCCC
Confidence            4499999999999999999999999999988876 2     457999999999999999999999999999975  5778


Q ss_pred             CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (605)
Q Consensus       107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P  186 (605)
                      +||++|+|||+|||||+||||||||++    .|+  |+|+||||++|+|||||||||||||+|++|+|+|||||||||+|
T Consensus        86 ~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiP  159 (414)
T 1o9p_A           86 SDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP  159 (414)
T ss_dssp             SCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred             CCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHh
Confidence            999999999999999999999999998    455  99999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCC---CcccCceeeeccchhhhcCCchh
Q 007401          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV---EPRRARRLIFADDIFQLSKVPKL  263 (605)
Q Consensus       187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~  263 (605)
                      |+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..   ....+.++.+..+.+.  ...++
T Consensus       160 Aa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~  237 (414)
T 1o9p_A          160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEP  237 (414)
T ss_dssp             HHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGG--CCCCH
T ss_pred             HHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEECcccc--CCCCH
Confidence            999999999999999999999999999999999999999999999999875411   1123446666554431  23467


Q ss_pred             hHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcC
Q 007401          264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK  342 (605)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~  342 (605)
                      ++.++++++++.|+..        |+.|++ ..|...                ..+...+..+..+|....+..++....
T Consensus       238 ~v~~a~~~a~~~L~~~--------G~~v~~~~~~~~~----------------~~~~~~~~~~~~~e~~~~~~~~~~~~~  293 (414)
T 1o9p_A          238 AAEQGLQAAIKAAERA--------GASVQAIDLPEAV----------------HEAWRIHPIIQDFEAHRALAWEFSEHH  293 (414)
T ss_dssp             HHHHHHHHHHHHHHHT--------TCEEEECCCCHHH----------------HHHHHHHHHHHHHHHHHHTHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHC--------CCEEEEecCcchH----------------HHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            8999999999988632        233322 222211                111222233445566666777777777


Q ss_pred             CCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhccccc
Q 007401          343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS  422 (605)
Q Consensus       343 ~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n  422 (605)
                      ..++|.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||+++.....       ...||.++|
T Consensus       294 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~~n  366 (414)
T 1o9p_A          294 DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRLWT  366 (414)
T ss_dssp             GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHHHH
T ss_pred             hhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhhhH
Confidence            7899999999999999999999999999999999999999999999999999999998653211       125799999


Q ss_pred             ccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHHH
Q 007401          423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (605)
Q Consensus       423 l~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~  467 (605)
                      ++|+|++|||+|+..|+|+|+|+++++++|..+++++..++..+.
T Consensus       367 l~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~  411 (414)
T 1o9p_A          367 LMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (414)
T ss_dssp             HHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            999999999999877999999999999999999999999987543

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=3.5e-89  Score=731.40  Aligned_cols=420  Identities=20%  Similarity=0.225  Sum_probs=340.7

Q ss_pred             HHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeecc-CCCCcccCCC
Q 007401           21 IGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVF-DVKGYVTGFG   94 (605)
Q Consensus        21 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~-~~~G~~tt~G   94 (605)
                      |+.+|+++     +|++|+++.+++||++.||.+|||++..+++++++|+. . .||||||||+||||| +++|++||+|
T Consensus         9 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~~Tt~G   86 (493)
T 3a2q_A            9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGDINTSS   86 (493)
T ss_dssp             CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTSBCCTT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCCccccc
Confidence            55566543     99999999999999999999999999988877766654 3 699999999999999 9999999999


Q ss_pred             chhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCcee
Q 007401           95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA  174 (605)
Q Consensus        95 s~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a  174 (605)
                      |+.|...+.++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|
T Consensus        87 s~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~a  166 (493)
T 3a2q_A           87 IKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVA  166 (493)
T ss_dssp             CHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEE
T ss_pred             ChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCcee
Confidence            99997212678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCccchhhhhcccccccCCCCCccCCCC--c-cCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------
Q 007401          175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV--L-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------  242 (605)
Q Consensus       175 ~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~--~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------  242 (605)
                      +|||||||||+||+||||||||||+||||+.|+  + |.++++|++|||+||++|++.+++++.+.+..++         
T Consensus       167 lGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~  246 (493)
T 3a2q_A          167 HGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRP  246 (493)
T ss_dssp             EEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCCCCSSC
T ss_pred             eecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCcccccCCCcc
Confidence            999999999999999999999999999999998  5 7788999999999999999999999987542211         


Q ss_pred             --------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchh
Q 007401          243 --------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTA  313 (605)
Q Consensus       243 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~  313 (605)
                              ..+.++.+..+.+......++++.++++++++.|+..        |+.|++ ..|.+..  .          
T Consensus       247 ~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~--------G~~v~~~~~~~~~~--~----------  306 (493)
T 3a2q_A          247 YAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAAL--------GHDVNDAYPEALGD--R----------  306 (493)
T ss_dssp             HHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHT--------TCEEEECCCGGGGC--C----------
T ss_pred             hhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEeCCCccCH--H----------
Confidence                    1223555555432101124678999999999998632        222222 2221210  0          


Q ss_pred             HHHHHHHHHHHhhhhhhHh---hHHHHHH--hcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHh-CCCcE
Q 007401          314 TLKALSSVMLSLQRYEFKT---IYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLL-KDDKI  387 (605)
Q Consensus       314 ~~~~~~~~~~~l~~~e~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~Dv  387 (605)
                         .+...+..+...|+..   .+..++.  .....+++.++.+++.+..++..+|.++++.|..+++.+.++| +++|+
T Consensus       307 ---~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~  383 (493)
T 3a2q_A          307 ---SFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDL  383 (493)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence               0011112223334433   2333331  2345688999999999999999999999999999999999999 99999


Q ss_pred             EEEeCCCCCCccCCccccc-c-------hh-h--hhchhhhcccccccCCceeeeecccC-CCCCceeEEeeccCCchhH
Q 007401          388 LVIPTVSDPPLKLNTKKTY-S-------AE-F--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL  455 (605)
Q Consensus       388 ll~Pt~~~~ap~~~~~~~~-~-------~~-~--~~~~~~~t~~~nl~G~PaisvP~G~~-~glp~g~~~~~~~~~d~~l  455 (605)
                      ||+||+|.+||++++.... .       .. +  ...+..||.++|++|+|++|||+|++ +|+|+|+|+++++++|..+
T Consensus       384 ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~l  463 (493)
T 3a2q_A          384 LILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL  463 (493)
T ss_dssp             EEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHH
T ss_pred             EEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHH
Confidence            9999999999999864321 0       01 1  12345689999999999999999986 9999999999999999999


Q ss_pred             HhHHHHHHhH
Q 007401          456 LDTVLDLYDS  465 (605)
Q Consensus       456 l~~a~~l~~~  465 (605)
                      ++++..+++.
T Consensus       464 L~~A~~lE~~  473 (493)
T 3a2q_A          464 LQVAAQLEGA  473 (493)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=3.4e-88  Score=720.72  Aligned_cols=402  Identities=23%  Similarity=0.290  Sum_probs=325.6

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (605)
                      +.+|++|+++.+++||++.||.+|||++..+++++.+     . ||||||||+|||||+++|++||+||+.|.+  .++.
T Consensus        19 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~--~~~~   90 (476)
T 2gi3_A           19 SEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTCASRILEN--YESV   90 (476)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCccChhhcC--CCCC
Confidence            4599999999999999999999999999998887732     2 999999999999999999999999999975  6788


Q ss_pred             CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (605)
Q Consensus       107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P  186 (605)
                      +||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+|||||||||+|
T Consensus        91 ~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiP  170 (476)
T 2gi3_A           91 FDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP  170 (476)
T ss_dssp             SCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHH
T ss_pred             CChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceeee
Q 007401          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF  250 (605)
Q Consensus       187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~  250 (605)
                      |+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++                ..+.|+.+
T Consensus       171 Aa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~  250 (476)
T 2gi3_A          171 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAV  250 (476)
T ss_dssp             HHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEE
T ss_pred             HHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhhhhhcCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999986532211                12345666


Q ss_pred             ccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhh
Q 007401          251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE  329 (605)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e  329 (605)
                      ..+.+.  ...++++.++++++++.|+..+        +.|+ ...|.+.....                 .+..+...|
T Consensus       251 ~~~~~~--~~~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~~~~~~-----------------~~~~~~~~e  303 (476)
T 2gi3_A          251 PEEIYE--HDIEEGVSERFEEALKLLERLG--------AKVERVKIPHIKYSVA-----------------TYYVIAPAE  303 (476)
T ss_dssp             EGGGGG--SCCCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHH-----------------HHHHHHHHH
T ss_pred             ECcccc--CCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHHHHH-----------------HHHHHHHHH
Confidence            555431  2346789999999999886332        2222 22333221110                 011111112


Q ss_pred             hHhhH-----------------HHHHHh-cCCCCChhHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401          330 FKTIY-----------------EEWVKS-AKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDK  386 (605)
Q Consensus       330 ~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D  386 (605)
                      ....+                 .+++.. ....+++.++.++..+..++.     .+|.++++.|..+++.++++|+++|
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  383 (476)
T 2gi3_A          304 ASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYD  383 (476)
T ss_dssp             HHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            21111                 112221 234577888888877755443     3788899999999999999999999


Q ss_pred             EEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          387 ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       387 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      +||+||+|.+||++++.......+.  ...||.++|++|+|++|||+|+.+|||+|+|+++++++|..|++++..+++.
T Consensus       384 ~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  460 (476)
T 2gi3_A          384 AILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKN  460 (476)
T ss_dssp             EEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            9999999999999986211111121  1358999999999999999999999999999999999999999999998875

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=3.2e-87  Score=717.17  Aligned_cols=406  Identities=23%  Similarity=0.281  Sum_probs=325.7

Q ss_pred             HHHHhh-----hhHHHHHHHHHhhcCcccCC---CCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccC
Q 007401           21 IGVSVV-----GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFD   85 (605)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~   85 (605)
                      ++.+|+     +.+|++|+++.+++||++.|   |.+|||++..++ ++++|+       .+...||||||||+|||||+
T Consensus        12 ~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   90 (503)
T 1m22_A           12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNIN   90 (503)
T ss_dssp             CHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBC
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccc
Confidence            455555     34999999999999999999   999999999877 665553       34567999999999999999


Q ss_pred             CCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccc-----cCCCCCCCCCCCCCCCCCCCCCCCCch
Q 007401           86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAF-----GITGENKHYGTPVNPQMPSHIPGGSSS  160 (605)
Q Consensus        86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~-----~~~~~n~~~G~~~NP~~~~~~~GGSSg  160 (605)
                      ++|++||+||+.|.+  .++ +||++|+|||+|||||+||||||||++     +.+|+|++||+|+||||++|+||||||
T Consensus        91 v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSg  167 (503)
T 1m22_A           91 AAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSS  167 (503)
T ss_dssp             CTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSH
T ss_pred             cCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHH
Confidence            999999999999975  577 999999999999999999999999998     778999999999999999999999999


Q ss_pred             HHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCC
Q 007401          161 GSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV  240 (605)
Q Consensus       161 GsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~  240 (605)
                      |||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..
T Consensus       168 GsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~  247 (503)
T 1m22_A          168 GSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDA  247 (503)
T ss_dssp             HHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865322


Q ss_pred             Cc---------------------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcch
Q 007401          241 EP---------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSL  298 (605)
Q Consensus       241 ~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~  298 (605)
                      ++                     ..+.|+.+..+.+.    .++++.++++++++.|+..+        +.|+ ..+|.+
T Consensus       248 d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~  315 (503)
T 1m22_A          248 DPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAG--------AVVVPVELPNQ  315 (503)
T ss_dssp             CGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTT--------CEEEEECCTTT
T ss_pred             CccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcC--------CEEEEeCCCcH
Confidence            21                     12345666555431    35678899999999886332        2222 222322


Q ss_pred             hhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHH---------------------hcCCCCChhHHHHHHHHh
Q 007401          299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVK---------------------SAKPRLGYNVFERVLEAI  357 (605)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~  357 (605)
                      .++..                 .+..+..+|+...+..|+.                     .....+++.++.++..+.
T Consensus       316 ~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (503)
T 1m22_A          316 GAWAE-----------------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATA  378 (503)
T ss_dssp             TTTHH-----------------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCC
T ss_pred             HHHHH-----------------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcC
Confidence            11100                 0001111122221111111                     113457888888888888


Q ss_pred             cCCHHHHHHHHHHHHHHHHH--HHHHhCC--CcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeec
Q 007401          358 NTTQDNIKILYKVRNEMRAA--LQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPI  433 (605)
Q Consensus       358 ~~s~~~~~~a~~~r~~~~~~--~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~  433 (605)
                      .++..+|.++++.|+++++.  +.++|++  +|+||+||+ .++|+++....   .+   ...||.++|++|+|++|||+
T Consensus       379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~---~~---~~~~t~~~nl~G~PaisvP~  451 (503)
T 1m22_A          379 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD---DF---PGESYSAAAVAGYPSLTVPM  451 (503)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC---cc---cccccccchhhCCCeEEecc
Confidence            88999999999888888766  9999974  999999999 56776652111   11   14689999999999999999


Q ss_pred             ccCCCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          434 GKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       434 G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      |+.+|+|+|+|+++++++|..|++++..++...
T Consensus       452 g~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~  484 (503)
T 1m22_A          452 GQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT  484 (503)
T ss_dssp             EEETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence            999999999999999999999999999998754

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=2.6e-85  Score=701.82  Aligned_cols=414  Identities=23%  Similarity=0.265  Sum_probs=323.7

Q ss_pred             HHH-HHHHHHhhcCcccCCCCcCcee-eecccCCCCCCC----------------CCCCCCCCCCceEEEeeccCCCCcc
Q 007401           29 VVL-AETLRRRRNPKLNGRVDFGAFL-ERFELIPFPQPP----------------PPAARQPLAGLKFAIKDVFDVKGYV   90 (605)
Q Consensus        29 ~~~-~~~~~~~~~~~~~~~~~~~a~~-~~~~~~a~~~a~----------------~~~~~gpL~Gvp~~vKD~~~~~G~~   90 (605)
                      ++. +|+++.+++++++.++.+|+++ ...++++ .++.                .+...||||||||+|||||+|+|++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD~i~v~G~~  105 (521)
T 3a1k_A           27 RLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVP  105 (521)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEETTBCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEcCcccCCcc
Confidence            666 7777777777777776666666 3333322 1111                1445799999999999999999999


Q ss_pred             cCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcC
Q 007401           91 TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQL  170 (605)
Q Consensus        91 tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~  170 (605)
                      ||+||+.|.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|+
T Consensus       106 Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~  183 (521)
T 3a1k_A          106 MMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGD  183 (521)
T ss_dssp             BCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTS
T ss_pred             cCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCC
Confidence            9999999975  57889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 007401          171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--------  242 (605)
Q Consensus       171 ~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--------  242 (605)
                      +|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++        
T Consensus       184 ~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~~  263 (521)
T 3a1k_A          184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEA  263 (521)
T ss_dssp             SSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCCC
T ss_pred             cceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987543221        


Q ss_pred             ----------ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCc
Q 007401          243 ----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENG  311 (605)
Q Consensus       243 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~  311 (605)
                                ..+.|+.++.+.+.. ...++++.++++++++.|+..        |+.|++ .+|.+......       
T Consensus       264 ~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~--------Ga~v~ev~~p~~~~~~~~-------  327 (521)
T 3a1k_A          264 GDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEI--------GCTVEEVNIPWHLHAFHI-------  327 (521)
T ss_dssp             CCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGG--------TCEEEEECCTHHHHHHHH-------
T ss_pred             cchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHC--------CCEEEEeCCCchHhHHHH-------
Confidence                      122355555543321 123578999999999988633        333322 33332211100       


Q ss_pred             hhHHHHH--HHHHHHhh-------------hhhhHhhHHHHHHhcCCCCChhHHHHHHHHh----cCCHHHHHHHHHHHH
Q 007401          312 TATLKAL--SSVMLSLQ-------------RYEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRN  372 (605)
Q Consensus       312 ~~~~~~~--~~~~~~l~-------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~~~a~~~r~  372 (605)
                         +..+  .+....+.             ..+....+..|.......+++.++.++..+.    .++..+|.++++.|.
T Consensus       328 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~  404 (521)
T 3a1k_A          328 ---WNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVP  404 (521)
T ss_dssp             ---HHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence               0000  00001110             0122233445555556678999998887764    356779999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhh---chhhhcccccccCCceeeeecccCCCCCceeEEeecc
Q 007401          373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYH  449 (605)
Q Consensus       373 ~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~  449 (605)
                      .+++.++++|+++|+||+||+|.+||++++.......+..   .++.||.++|++|+|++|||+|+.+|+|+|+|+++++
T Consensus       405 ~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~  484 (521)
T 3a1k_A          405 LARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRH  484 (521)
T ss_dssp             HHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECST
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecccCCCCCeeEEEEcCC
Confidence            9999999999999999999999999999864322211111   2346799999999999999999999999999999999


Q ss_pred             CCchhHHhHHHHHHh
Q 007401          450 GGDKFLLDTVLDLYD  464 (605)
Q Consensus       450 ~~d~~ll~~a~~l~~  464 (605)
                      ++|..+++++..+++
T Consensus       485 ~~d~~LL~~A~~~E~  499 (521)
T 3a1k_A          485 FDDATVLRVGRAFEK  499 (521)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999999987

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=8.7e-84  Score=691.60  Aligned_cols=441  Identities=16%  Similarity=0.174  Sum_probs=330.8

Q ss_pred             ecCCCCchhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeec
Q 007401            9 KTNTSNPKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDV   83 (605)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~   83 (605)
                      .+.+...+++..|+++|++.     +|++|+++++++||.+.|+.+|||++.+++. .++++.....||||||||+||||
T Consensus        60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~  138 (573)
T 3ppm_A           60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKEC  138 (573)
T ss_dssp             CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETT
T ss_pred             CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcc
Confidence            34455567777789888855     9999999999999999999999999987653 22222223359999999999999


Q ss_pred             cCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 007401           84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA  163 (605)
Q Consensus        84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa  163 (605)
                      |+++|++||+||..|.+  .++.+||++|+||++||||++||||||||+++.+|.|++||+|+||||++++|||||||||
T Consensus       139 ~~~~G~~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa  216 (573)
T 3ppm_A          139 FSYKGHDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEG  216 (573)
T ss_dssp             BCCBTCCCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHH
T ss_pred             cCCCCCCcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHH
Confidence            99999999999999975  6788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCC----CccccccccCHHHHHHHHHHHccCC-
Q 007401          164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS----LDTVGLLARNASILHRVGHVLLQLN-  238 (605)
Q Consensus       164 aaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~----~d~~G~~ar~~~d~~~v~~~~~~~~-  238 (605)
                      ||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|.+.+    +|++|||+||++|++.+++++.+.+ 
T Consensus       217 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~  296 (573)
T 3ppm_A          217 ALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHL  296 (573)
T ss_dssp             HHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHH
T ss_pred             HHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999998765    8999999999999999999876421 


Q ss_pred             -----------CC----CcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhh
Q 007401          239 -----------AV----EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLR  302 (605)
Q Consensus       239 -----------~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~  302 (605)
                                 +.    ....+.++++..+..  ...+++++.++++++++.|+..+        +.| +..+|.+.+..
T Consensus       297 ~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G--------~~v~~~~~p~~~~~~  366 (573)
T 3ppm_A          297 FTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAG--------HTLIPFLPNNIPYAL  366 (573)
T ss_dssp             HHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTT--------CEEEECCCTTHHHHH
T ss_pred             cccCCCCCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCC--------CEEEEecCccHHHHH
Confidence                       10    012234566554432  12346789999999999986322        222 22334332211


Q ss_pred             hcC----CCCCCchhHHHHHHH-----HHH-HhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCCHHHHHHHHHHHH
Q 007401          303 AQS----TSPENGTATLKALSS-----VML-SLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRN  372 (605)
Q Consensus       303 ~~~----~~~~~~~~~~~~~~~-----~~~-~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~  372 (605)
                      ...    ...+........+..     ... ..............+......+.|.+...+..+...+..+++++...|.
T Consensus       367 ~~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~  446 (573)
T 3ppm_A          367 EVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIE  446 (573)
T ss_dssp             HTHHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHH
Confidence            100    000000000000000     000 0000000000011111111234455555566667788999999999999


Q ss_pred             HHHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccC--------------
Q 007401          373 EMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY--------------  436 (605)
Q Consensus       373 ~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~--------------  436 (605)
                      .+++.+.+.|.  ++|+||+|+ +.+|++++....     ...+..||.+||++|+|+++||+|+.              
T Consensus       447 ~~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~  520 (573)
T 3ppm_A          447 MYRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGY  520 (573)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEecccccccccccccccccc
Confidence            99999999995  599999999 558888874211     11345799999999999999999953              


Q ss_pred             ----------------CCCCceeEEeeccCCchhHHhHHHHHHhHHHH
Q 007401          437 ----------------NEHPISISFITYHGGDKFLLDTVLDLYDSLQE  468 (605)
Q Consensus       437 ----------------~glp~g~~~~~~~~~d~~ll~~a~~l~~~~~e  468 (605)
                                      +|+|+|+|+++++++|+.+++++..+++.+..
T Consensus       521 ~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~  568 (573)
T 3ppm_A          521 FGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTP  568 (573)
T ss_dssp             SCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             cchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence                            69999999999999999999999999876543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=3.6e-19  Score=154.67  Aligned_cols=118  Identities=31%  Similarity=0.461  Sum_probs=114.6

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      -+|+.++.+.++|+.+++.|+|++|++.|+++++++|+++.+|+++|.+|+.+|++++|+++|+++++++|+++.+|+++
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      |.++..+|++++|+++|+++++++|++..++..++.++
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999988764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=2.4e-16  Score=141.06  Aligned_cols=111  Identities=15%  Similarity=0.089  Sum_probs=107.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ...-.|+....++.+|..+++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+++|+++++++|+++.+|
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~  107 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV  107 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      +++|.+|..+|++++|+.+|++++++.|+..
T Consensus       108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.71  E-value=9.3e-17  Score=143.90  Aligned_cols=122  Identities=13%  Similarity=0.024  Sum_probs=114.8

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      ..|+....++.+|.+|++.|+|++|+++|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus        26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          564 GTAREALFCYNEALQD-FKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      |.+|...|++++|.+. ++++++++|+++.++...+.++...|
T Consensus       106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9999999999887765 59999999999999999999887665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.8e-16  Score=135.85  Aligned_cols=118  Identities=31%  Similarity=0.412  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..++.|+.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|+.++++++|+.+|+++++++|+++.+|+++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhh
Q 007401          567 REALFCYNEALQDFKHAMVLE------PQNKAANLAEKRLRKLI  604 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~  604 (605)
                      +..+|++++|+++|+++++++      |++..++..+..+...+
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999      99999999999887764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.68  E-value=1.4e-16  Score=141.32  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SAT-----YYSNRAAAYLELGCFQQAEEDCSKTISL--  552 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~--  552 (605)
                      ..+..+.++|+.+++.|+|++|+..|+++++++|+       +..     +|.++|.++..+|+|++|+.+|++++++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46788999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          553 -----DKKNVKAY----LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       553 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                           +|++..+|    +++|.++..+|++++|+++|+++++++|++..+...+..+.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                 99999999    99999999999999999999999999998865555444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=1.6e-15  Score=135.45  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=108.8

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|.....++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++++|+++|+++++++|+++.+++++|
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .+|..+|++++|+++|+++++++|+++........+
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  132 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV  132 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence            999999999999999999999999876654444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.66  E-value=1.4e-15  Score=138.03  Aligned_cols=113  Identities=31%  Similarity=0.450  Sum_probs=107.7

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ...+..+..|+.+|..+++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+.+|+++++++|+++.+|++
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      +|.+|..+|++++|+++|+++++++|++..++.
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  117 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM  117 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            999999999999999999999999999977433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.66  E-value=1.6e-15  Score=131.72  Aligned_cols=114  Identities=31%  Similarity=0.389  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------VK  558 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  558 (605)
                      .+.+..+.++|+.++++|+|++|+++|+++++++|+++.+|+++|.+|+.+++|++|+++|+++++++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            46688999999999999999999999999999999999999999999999999999999999999998865       35


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      +|+++|.++..+|++++|+++|+++++..|+ +.....+..+
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            8999999999999999999999999999885 5555444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.66  E-value=1.9e-15  Score=133.77  Aligned_cols=121  Identities=20%  Similarity=0.202  Sum_probs=112.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ....|.....++.+|..+++.|+|++|+..|++++..+|+++.+|+++|.+|..+++|++|+.+|+++++++|+++.+++
T Consensus        11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   90 (142)
T 2xcb_A           11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF   90 (142)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence            34568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ++|.++..+|++++|+++|+++++++|+++........+..
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            99999999999999999999999999988766555554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.66  E-value=1.4e-15  Score=137.73  Aligned_cols=119  Identities=28%  Similarity=0.442  Sum_probs=110.8

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQAEEDC  546 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~  546 (605)
                      ....+..+.++|+.+++.|+|++|+..|++++.+                  +|.+..+|+++|.||+.+++|++|+.++
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3467899999999999999999999999999999                  7778899999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHh
Q 007401          547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK-AANLAEKRLRKL  603 (605)
Q Consensus       547 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~  603 (605)
                      +++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++. .+...+..+...
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 667777776554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=6e-15  Score=164.93  Aligned_cols=146  Identities=16%  Similarity=0.131  Sum_probs=123.4

Q ss_pred             HHhHHHHHH--hHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          455 LLDTVLDLY--DSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA  532 (605)
Q Consensus       455 ll~~a~~l~--~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  532 (605)
                      +..++..+.  ..+.+++....+..     ..+|+.+..|+++|.++.++|++++|+++|+++++++|+++.+|+++|.+
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl-----~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKAL-----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            334443333  33566666665543     23456788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          533 YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       533 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      |.++|++++|+++|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.++..+|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998887664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=8.5e-15  Score=163.72  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=117.7

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      ..|+.++.|.++|.++.++|++++|+++|+++++++|+++.+|+++|.+|.++|++++|+++|+++++++|+++.+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      |.+|.++|++++|+++|+++++++|++..++..++.++..+|
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g  125 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG  125 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999988765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-14  Score=123.99  Aligned_cols=124  Identities=34%  Similarity=0.456  Sum_probs=117.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ....+.....|+.+|..++..|+|++|+..|+++++.+|++..+++++|.++...+++++|+++++++++++|+++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++|.++..+|++++|+++|+++++++|++..++..++.++...|
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.59  E-value=6.7e-14  Score=120.28  Aligned_cols=122  Identities=35%  Similarity=0.506  Sum_probs=117.0

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      ..+..+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...+++++|++.++++++++|+++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      |.++...|++++|+..|+++++++|++..++..++.++..+|
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.59  E-value=1.8e-14  Score=137.48  Aligned_cols=146  Identities=18%  Similarity=0.137  Sum_probs=125.5

Q ss_pred             hHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          454 FLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA  531 (605)
Q Consensus       454 ~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  531 (605)
                      .....+..+..  ...++.....+..     ...|.....++.+|.++.+.|++++|+..|+++++++|+++.+++++|.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERAL-----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-----TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33444444433  3455555554443     3356678899999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          532 AYLEL-----------GCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       532 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      ++..+           |++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++ +++.++..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999999 999999999998


Q ss_pred             HHhhC
Q 007401          601 RKLIG  605 (605)
Q Consensus       601 ~~~~g  605 (605)
                      +..+|
T Consensus       161 ~~~~g  165 (217)
T 2pl2_A          161 YLSMG  165 (217)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            87664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=3.5e-14  Score=135.42  Aligned_cols=120  Identities=16%  Similarity=0.099  Sum_probs=112.6

Q ss_pred             ChHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401          485 SIDASELLKEKGNAAFKG-----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  553 (605)
                      .|+....++.+|.++...           |++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            466788999999999999           999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       554 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                       +++.+++++|.++..+|++++|+..|+++++++|++..++..++.++...|
T Consensus       149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g  199 (217)
T 2pl2_A          149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG  199 (217)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred             -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence             999999999999999999999999999999999999999999998876654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.58  E-value=1.9e-14  Score=136.22  Aligned_cols=115  Identities=22%  Similarity=0.182  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN----------------RAAAYLELGCFQQAEEDCSKTIS  551 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~  551 (605)
                      .++.++..|..++..|+|++|+..|+++++.+|+++.+++.                +|.+|..+|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       552 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ++|+++.+++++|.++...|++++|+.+|+++++++|++..++..++.++.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=1.6e-14  Score=124.08  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...++.+|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHH
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      ..|++++|+..|+++++++|++..
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.57  E-value=2.9e-14  Score=124.59  Aligned_cols=117  Identities=32%  Similarity=0.485  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +..+..++.+|..++..|+|++|+..|++++..+|++..+++++|.+++.++++++|+.+|+++++++|+++.+++++|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQ-----NKAANLAEKRLRK  602 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~  602 (605)
                      ++..+|++++|+..|+++++++|+     +..+...+..+..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998     6777766666554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.57  E-value=8.7e-14  Score=117.30  Aligned_cols=115  Identities=35%  Similarity=0.444  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...+++++|+..++++++++|+++.+++++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ...|++++|.+.|+++++++|++..++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999998887754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.57  E-value=4.6e-14  Score=144.18  Aligned_cols=120  Identities=30%  Similarity=0.405  Sum_probs=114.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      .+..+..++.+|..+++.|+|++|+.+|++++.+.|++               ..+|+++|.+|+++++|++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35678899999999999999999999999999999998               799999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.56  E-value=3.8e-15  Score=133.34  Aligned_cols=111  Identities=14%  Similarity=0.053  Sum_probs=103.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN  574 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  574 (605)
                      +|..+..+|++++|++.|++++..+|+++..++.+|.+|+++++|++|+++|+++++++|+++.+|+++|.+|..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            57888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          575 EALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       575 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|+.+|+++++++|++..++..++.++...|
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKND  113 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=7.9e-14  Score=123.13  Aligned_cols=119  Identities=34%  Similarity=0.452  Sum_probs=113.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      .+..+..++.+|..++..|+|++|+..|+++++.+|++   ..+++++|.+|..++++++|++.++++++++|+++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            45678899999999999999999999999999999998   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++|.++..+|++++|+.+|+++++++|++..++..+..+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999988887654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=9.4e-14  Score=130.16  Aligned_cols=119  Identities=26%  Similarity=0.303  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA----------------TYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      +..+..+..+|..++..|+|++|+..|++++.+.|+++                .++.++|.+|+.+++|++|+.+|+++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999887                89999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.++..+
T Consensus       115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=5.4e-14  Score=145.83  Aligned_cols=133  Identities=11%  Similarity=0.052  Sum_probs=121.8

Q ss_pred             HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007401          466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQ-WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE  544 (605)
Q Consensus       466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  544 (605)
                      ..+++....+..     ..+|.....|+.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.
T Consensus       113 ~~~Al~~~~~al-----~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~  187 (382)
T 2h6f_A          113 SERAFKLTRDAI-----ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE  187 (382)
T ss_dssp             CHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             hHHHHHHHHHHH-----HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence            445555554443     3467788999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       545 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +|+++++++|++..+|+++|.++..+|++++|+++|+++++++|++..++..++.++..
T Consensus       188 ~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=3.8e-14  Score=146.96  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=104.6

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .+|+....|+.+|.++...|+|++|+..|+++++++|++..+|+++|.++..+|++++|+++|+++++++|++..+|+++
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-ccCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          564 GTAREA-LFCYNEA-----LQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       564 a~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      |.++.. .|.+++|     +++|+++++++|++..++..++.++...|
T Consensus       241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence            999888 4554777     58899999999999999988888876543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=5e-13  Score=113.69  Aligned_cols=118  Identities=28%  Similarity=0.444  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....|+.+|..+...|++++|++.|+++++..|++..++..+|.++...+++++|+..++++++.+|+++..++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ...|++++|+..|+++++++|++..++..++.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999887765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=8.3e-14  Score=148.46  Aligned_cols=120  Identities=32%  Similarity=0.473  Sum_probs=110.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      .+..+..|+++|+.+++.|+|++|+..|+++++++|++               ..+|+++|.||+++++|++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35678899999999999999999999999999999998               799999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=3.2e-13  Score=124.51  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=120.0

Q ss_pred             HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007401          466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED  545 (605)
Q Consensus       466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  545 (605)
                      +.+++....+..     ..+|+....|..+|.++.+.|++++|+..+++++...|++..++..+|.++...+++++|.+.
T Consensus        21 ~~~A~~~~~~al-----~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   95 (184)
T 3vtx_A           21 FDGAIRAYKKVL-----KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDA   95 (184)
T ss_dssp             HHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            556666665543     235667888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          546 CSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       546 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +.++++++|++..+++.+|.++..+|++++|++.|+++++++|++..++..++.++..+|
T Consensus        96 ~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g  155 (184)
T 3vtx_A           96 LQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG  155 (184)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999988765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.51  E-value=4.7e-13  Score=115.42  Aligned_cols=113  Identities=19%  Similarity=0.184  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRR  563 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  563 (605)
                      +.++.+|..++..|+|++|+..|+++++.+|++.   .+++.+|.+++..|++++|+..|+++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3478899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      |.++..+|++++|+..|+++++..|++..+......+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999988777766544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=4.5e-13  Score=123.52  Aligned_cols=107  Identities=28%  Similarity=0.282  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....+..+|..+...+++++|+..+++++..+|++..++..+|.+|..+|++++|++.|+++++++|+++.+|+++|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~  149 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL  149 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence            44577888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      +|..+|++++|+++|+++++++|+++.
T Consensus       150 ~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          150 AYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999999987643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=7.5e-13  Score=119.22  Aligned_cols=115  Identities=37%  Similarity=0.642  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ...+..++.+|..++..|+|++|+..|+++++.+|++..++.++|.++..++++++|++.++++++++|+++.+++++|.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      ++..+|++++|+.+|+++++++|++..++..+..+
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999887655554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=4.2e-13  Score=128.49  Aligned_cols=116  Identities=20%  Similarity=0.235  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ++.++.+|..++..|+|++|+..|+++++++| .+..+++++|.++..++++++|+++|+++++++|++..+++.+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            58899999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhh
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNK-------AANLAEKRLRKLI  604 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~  604 (605)
                      ..+|++++|++.|+++++++|++.       .++..++.++...
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~  130 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA  130 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh
Confidence            999999999999999999999999       4466666665443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.50  E-value=4.8e-13  Score=114.96  Aligned_cols=117  Identities=28%  Similarity=0.434  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------VKA  559 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~  559 (605)
                      +.+..++.+|..++..|++++|+.+|++++..+|++..+++++|.++...+++++|+.+++++++++|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999998877       899


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          560 YLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       560 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|.++...|++++|+++|++++++.| +......+..+...+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 688888777776543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.49  E-value=2.5e-13  Score=140.37  Aligned_cols=119  Identities=29%  Similarity=0.479  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIK----------------LNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      .+.+..|+.+|+.+++.|+|++|+..|+++++                .+|.+..+|+++|.+|+++++|++|+++|+++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34577899999999999999999999999998                77888999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++..+..++..+
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.48  E-value=1.2e-13  Score=122.14  Aligned_cols=102  Identities=20%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF----------QQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      .+.++|++|++.|+++++++|+++++|+++|.++..++++          ++|+..|++|++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4556899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          570 LF-----------CYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       570 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      +|           ++++|+++|+++++++|++..+...+..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            85           899999999999999999988877766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=6e-13  Score=127.37  Aligned_cols=116  Identities=23%  Similarity=0.186  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV-------KAYL  561 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~  561 (605)
                      ...++.+|.+++..|+|++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|+++       .+|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999999999999       6799


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhh
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQ--NKAANLAEKRLRKLI  604 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~  604 (605)
                      ++|.++..+|++++|++.|+++++++|+  +..++..++.++...
T Consensus       122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  166 (228)
T 4i17_A          122 KEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN  166 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999  889999988887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=3.4e-13  Score=112.52  Aligned_cols=104  Identities=14%  Similarity=0.197  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRRG  564 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la  564 (605)
                      .....++.+|..++..|++++|+..|+++++.+|++..+++++|.++..++++++|++.++++++++|+  +..+++.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            445678899999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHHHc-cCHHHHHHHHHHHHHhCCCC
Q 007401          565 TAREAL-FCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       565 ~~~~~~-g~~~~A~~~~~~al~~~p~~  590 (605)
                      .++..+ |++++|+++++++++..|.+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999999 99999999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.44  E-value=2.3e-12  Score=121.88  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=100.2

Q ss_pred             ChHHHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401          485 SIDASELLKE----------------KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       485 ~~~~a~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  548 (605)
                      .|+....|+.                +|.++.+.|+|++|+..|+++++++|++..+++++|.++..+|++++|+++|++
T Consensus        34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  113 (208)
T 3urz_A           34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK  113 (208)
T ss_dssp             CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4566666776                999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHH-----------------------------------ccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          549 TISLDKKNVKAYLRRGTAREA-----------------------------------LFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       549 al~~~p~~~~~~~~la~~~~~-----------------------------------~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      +++++|+++.+|+++|.+|+.                                   +|+|++|+.+|+++++++|++ ..
T Consensus       114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~  192 (208)
T 3urz_A          114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EA  192 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HH
Confidence            999999999988888877643                                   346889999999999999974 34


Q ss_pred             HHHHHHH
Q 007401          594 NLAEKRL  600 (605)
Q Consensus       594 ~~~~~~~  600 (605)
                      ...+..+
T Consensus       193 ~~~l~~i  199 (208)
T 3urz_A          193 QKTLDKI  199 (208)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=1.1e-11  Score=113.18  Aligned_cols=120  Identities=17%  Similarity=0.154  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....+..+|..+...|++++|+..|+++++..|++..++..+|.++...+++++|++.++++++.+|+++.+++.+|.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|+..++++++.+|++..++..++.++...|
T Consensus       119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A          119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999998887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.43  E-value=2.5e-13  Score=115.67  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=90.9

Q ss_pred             HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401          501 KGKQWNKAVNYYSEAIKL---NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       501 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  577 (605)
                      ..|++++|+..|++++++   +|++..+++++|.+|+.+|+|++|++.|+++++++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          578 QDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       578 ~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      ..|+++++.+|+++........+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999988876665554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.43  E-value=9.7e-14  Score=124.06  Aligned_cols=98  Identities=10%  Similarity=0.002  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      +-..|++++.++|++..+++++|.++++.|+|++|++.|+++++++|+++.+|+++|.++..+|+|++|+.+|+++++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33557888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhC
Q 007401          588 PQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       588 p~~~~~~~~~~~~~~~~g  605 (605)
                      |+++.++..++.++..+|
T Consensus       101 P~~~~~~~~lg~~~~~lg  118 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLK  118 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHcC
Confidence            999999999999998775

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.42  E-value=1.9e-12  Score=118.65  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=105.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCCHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-YLELGCF--QQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      |.....|+.+|.+++..|+|++|+.+|+++++++|+++.++..+|.+ +...+++  ++|+..|+++++++|+++.+++.
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34578999999999999999999999999999999999999999999 8899999  99999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      +|.++...|++++|+..|+++++++|++.........
T Consensus       121 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            9999999999999999999999999988655444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.41  E-value=1.6e-12  Score=129.20  Aligned_cols=103  Identities=34%  Similarity=0.556  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+..++.+|..+++.|+|++|+..|+++++.+|+++.+++++|.+|..+|++++|+++|+++++++|+++.+++++|.+|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCC
Q 007401          568 EALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      ..+|++++|+..|+++++++|++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=7.3e-12  Score=107.71  Aligned_cols=112  Identities=27%  Similarity=0.403  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      .|+.+|..+...|++++|+..|+++++..|++...+..+|.++...+++++|++.++++++.+|++...++.+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            34555555555566666666666665555555555555566555556666666666666555555555555566666566


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          571 FCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      |++++|++.++++++..|++...+..++.++.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  114 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY  114 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            66666666666665555555555555555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.40  E-value=3.3e-13  Score=137.91  Aligned_cols=117  Identities=30%  Similarity=0.412  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----------------TYYSNRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~  548 (605)
                      +..+..++.+|+.+++.|+|++|+.+|++++.+.|++.                 .+|+++|.+|+++++|++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56688899999999999999999999999999999887                 4899999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          549 TISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       549 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+..
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888877643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.38  E-value=5.2e-12  Score=138.48  Aligned_cols=120  Identities=10%  Similarity=-0.056  Sum_probs=107.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.....|+.+|..+++.|+|++|++.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|+++.+++++|
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   98 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG   98 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .+|..+|++++|++.|+++++++|++..++..++.++..+
T Consensus        99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998888888887665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.37  E-value=8.9e-13  Score=141.16  Aligned_cols=115  Identities=37%  Similarity=0.642  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ++.+..++.+|..++++|+|++|+++|+++++++|+++.+++++|.+|.++++|++|+++|+++++++|+++.+++++|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      +|..+|++++|++.|+++++++|++..++..++.+
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999888888776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=1.8e-12  Score=145.17  Aligned_cols=120  Identities=16%  Similarity=0.042  Sum_probs=107.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .++....++.+|..+++.|+|++|++.|+++++.+|+++.+|+++|.+|+.+|++++|+++|+++++++|+++.+|+++|
T Consensus       429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .++.++|++++ +++|+++++++|++..++..++.++..+|
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence            99999999999 99999999999999999988888887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.35  E-value=3.4e-12  Score=110.28  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=86.2

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          514 EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       514 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      ++..++|+.+..+.++|..|++.|+|++|++.|+++++++|+++.+|+++|.++..+|++++|+++|+++++++|++..+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 007401          594 NLAEKRLRKLIG  605 (605)
Q Consensus       594 ~~~~~~~~~~~g  605 (605)
                      +..++.++..+|
T Consensus        84 ~~~lg~~~~~~~   95 (126)
T 4gco_A           84 YIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
Confidence            999999988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=4.3e-12  Score=135.90  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHh
Q 007401          489 SELLKEKGNAAFKG---------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL--------GCFQQAEEDCSKTIS  551 (605)
Q Consensus       489 a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~  551 (605)
                      ...+..+|.++...         |++++|++.|+++++++|++..+|+++|.+|..+        +++++|+++|+++++
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~  249 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK  249 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            58999999999999         9999999999999999999999999999999999        999999999999999


Q ss_pred             cCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          552 LDK---KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       552 ~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++|   +++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.++..+
T Consensus       250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999   99999999999999999999999999999999999999999988887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.1e-11  Score=119.83  Aligned_cols=116  Identities=32%  Similarity=0.438  Sum_probs=111.3

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.....+..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++++|+++.+++.+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLE------PQNKAANLAEKRL  600 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~  600 (605)
                      .++..+|++++|++.|+++++++      |++..++..+..+
T Consensus       215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999      9998888877664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.35  E-value=1.3e-11  Score=116.47  Aligned_cols=116  Identities=22%  Similarity=0.232  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..+..++.+|..++..|+|++|+..|++++  ++ ++.+++++|.+|..+|++++|++.|+++++++|+++.+++++|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            456678999999999999999999999995  33 789999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNK----------------AANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~g  605 (605)
                      +..+|++++|++.|++++++.|++.                .++..++.++..+|
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  135 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE  135 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence            9999999999999999999988877                88888888877654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=2.3e-11  Score=119.10  Aligned_cols=114  Identities=20%  Similarity=0.093  Sum_probs=107.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++++|++..+++.+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      .++...|++++|+..|+++++++|++........
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999985554433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=7.6e-12  Score=122.44  Aligned_cols=110  Identities=14%  Similarity=0.168  Sum_probs=102.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VK  558 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~  558 (605)
                      .+..++.++.+|..+++.|+|++|+..|+++++.+|++   ..+++.+|.+|+.+|+|++|+..|+++++++|++   +.
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            34568899999999999999999999999999999999   9999999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          559 AYLRRGTAREA--------LFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       559 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      +++.+|.++..        +|++++|+..|+++++.+|++..+.
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            99999999999        9999999999999999999987665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.35  E-value=2.8e-11  Score=116.16  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....+..+|..+...|++++|++.|+++++..|++..++..+|.++...|++++|++.++++++.+|+++.+++.+|.
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  167 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM  167 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            34567777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|+..|+++++.+|++..++..++.++...|
T Consensus       168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  207 (243)
T 2q7f_A          168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE  207 (243)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc
Confidence            8888888888888888888888888888877777776553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=3.2e-11  Score=113.69  Aligned_cols=105  Identities=13%  Similarity=0.097  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV----------  557 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------  557 (605)
                      ....++.+|.+++..|+|++|+..|++++..+|++..+++++|.+|..++++++|+++|++++++.|++.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            3679999999999999999999999999999999999999999999999999999999999999888776          


Q ss_pred             ------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          558 ------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       558 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                            .+++++|.++..+|++++|+++|+++++++|++..
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                  99999999999999999999999999999997643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.34  E-value=8.3e-12  Score=122.15  Aligned_cols=153  Identities=12%  Similarity=0.080  Sum_probs=122.6

Q ss_pred             CCchhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH
Q 007401          450 GGDKFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---AT  524 (605)
Q Consensus       450 ~~d~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~  524 (605)
                      .....++..+..+...  ..+++.......  ...+..+.....++.+|.++++.|+|++|+..|+++++..|++   ..
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF--TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG--GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            3445555555555443  445555544432  2223334458899999999999999999999999999998854   77


Q ss_pred             HHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCHHHHHHH
Q 007401          525 YYSNRAAAYLE--------LGCFQQAEEDCSKTISLDKKNVKAY-----------------LRRGTAREALFCYNEALQD  579 (605)
Q Consensus       525 ~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~  579 (605)
                      +++.+|.+++.        ++++++|+..|+++++.+|++..++                 +.+|.+|...|++++|+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            89999999999        9999999999999999999987665                 8899999999999999999


Q ss_pred             HHHHHHhCCCC---HHHHHHHHHHHHhh
Q 007401          580 FKHAMVLEPQN---KAANLAEKRLRKLI  604 (605)
Q Consensus       580 ~~~al~~~p~~---~~~~~~~~~~~~~~  604 (605)
                      |+++++.+|++   ..++..++.++..+
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            99999999984   56788887776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=1.7e-11  Score=111.96  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ......+..+|..++..|++++|+..|+++++..|++..++..+|.++...+++++|++.++++++.+|++..+++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|.+.++++++.+|++...+..++.++...|
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  124 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG  124 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999988876654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=2.6e-11  Score=116.41  Aligned_cols=147  Identities=16%  Similarity=0.134  Sum_probs=120.7

Q ss_pred             chhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          452 DKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR  529 (605)
Q Consensus       452 d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  529 (605)
                      ......++..+..  ...++.....+...     ..+.....+..+|..+...|++++|+..|+++++..|++..++..+
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  165 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR-----AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF  165 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            3333444443332  24455555544422     2234567899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          530 AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       530 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      |.++...|++++|++.++++++.+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+..+...
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999888766543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.33  E-value=2.9e-11  Score=114.27  Aligned_cols=135  Identities=14%  Similarity=0.046  Sum_probs=115.6

Q ss_pred             HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHH
Q 007401          466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-GCFQQAEE  544 (605)
Q Consensus       466 ~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~  544 (605)
                      ..++.........     ..+.....+..+|.++...|++++|++.|+++++.+|++..++..+|.++... +++++|++
T Consensus        24 ~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~   98 (225)
T 2vq2_A           24 YRQATASIEDALK-----SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA   98 (225)
T ss_dssp             HHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHH-----hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH
Confidence            4455555544322     23445778999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          545 DCSKTIS--LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       545 ~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .++++++  .+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++...|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence            9999999  667778999999999999999999999999999999999999999888877654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=2.3e-11  Score=117.61  Aligned_cols=119  Identities=19%  Similarity=0.278  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK--------------------------LNGTSATYYSNRAAAYLELGCFQ  540 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~  540 (605)
                      ..+..+..+|..+...|++++|+..|++++.                          .+|++..++..+|.++...|+++
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence            3478899999999999999999999999998                          67778899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       541 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|++.|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++..+|
T Consensus       157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999887664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.32  E-value=1.8e-11  Score=121.96  Aligned_cols=119  Identities=11%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH----------------------
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE----------------------  544 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~----------------------  544 (605)
                      ...+.+..+|..+.+.|++++|+..|+++++.+|++..+++++|.++...|++++|++                      
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            4567788889999999999999999999999999999999999999988888887654                      


Q ss_pred             ------------HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhC
Q 007401          545 ------------DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN--KAANLAEKRLRKLIG  605 (605)
Q Consensus       545 ------------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g  605 (605)
                                  .|+++++++|+++.+++++|.++...|++++|+..|+++++.+|++  ..++..++.++..+|
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence                        4555677789999999999999999999999999999999999998  888999888887765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.32  E-value=9.2e-12  Score=114.17  Aligned_cols=147  Identities=13%  Similarity=0.094  Sum_probs=117.3

Q ss_pred             hhHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          453 KFLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA  530 (605)
Q Consensus       453 ~~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  530 (605)
                      ..++..+..+...  ..++.......     ....|+....++.+|.++.+.|++++|+..|++++..+| ++..+..++
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~a-----l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTL-----SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3445555444433  44555555443     344677789999999999999999999999999999999 887777766


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhC
Q 007401          531 AAYL-ELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN--KAANLAEKRLRKLIG  605 (605)
Q Consensus       531 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g  605 (605)
                      .+.+ ...+..+|++.++++++++|+++.+++++|.++...|++++|+..|+++++.+|+.  ..++..++.++..+|
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence            5543 33344568999999999999999999999999999999999999999999999975  568888888877654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.32  E-value=1.3e-12  Score=146.42  Aligned_cols=116  Identities=13%  Similarity=-0.034  Sum_probs=111.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|+....|+.+|.++++.|+|++|++.|+++++++|+++.+++++|.+|.++|++++ +++|+++++++|++..+|+++|
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            355688999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      .++..+|++++|+++|+++++++|++..++..++.++
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999998888875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=6.8e-12  Score=134.34  Aligned_cols=119  Identities=16%  Similarity=0.165  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCC
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~  556 (605)
                      |.....|+.+|.++++.|++++|+++|+++++++|+ ..++.++|.++..+         +++++|++.|+++++++|++
T Consensus       134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            455789999999999999999999999999999999 79999999999999         99999999999999999999


Q ss_pred             HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhhC
Q 007401          557 VKAYLRRGTAREAL--------FCYNEALQDFKHAMVLEP---QNKAANLAEKRLRKLIG  605 (605)
Q Consensus       557 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g  605 (605)
                      +.+|+++|.+|..+        |++++|+++|+++++++|   ++..++..++.++..+|
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g  272 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE  272 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence            99999999999999        999999999999999999   99999999999987764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=3.4e-11  Score=117.91  Aligned_cols=117  Identities=21%  Similarity=0.178  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....|..+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|+++.+++++|...
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999555


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +..+++++|++.|+++++++|++..++..++.++..+
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  189 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ  189 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            5667999999999999999999999999888887654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.31  E-value=2.4e-11  Score=124.63  Aligned_cols=118  Identities=13%  Similarity=0.165  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+..+..+|..+...|++++|+..|++++..+|++..+++++|.++...|++++|++.|+++++++|+++.+++++|.++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHhhC
Q 007401          568 EALFCYNEALQDFKHAMVLEPQN-----------KAANLAEKRLRKLIG  605 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~g  605 (605)
                      ..+|++++|+..|+++++++|++           ..++..++.++..+|
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999988           889999998887765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.31  E-value=3.6e-12  Score=113.48  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       508 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                      +-..|++++.++|++...++.+|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+++|+++++++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhC
Q 007401          588 PQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       588 p~~~~~~~~~~~~~~~~g  605 (605)
                      |+++.++..++.++..+|
T Consensus        86 p~~~~~~~~lg~~~~~~g  103 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXG  103 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHcC
Confidence            999999999999987765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.31  E-value=4.6e-11  Score=115.62  Aligned_cols=115  Identities=21%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ...+..+|..++..|++++|+++|++++.  ..|.+..++..+|.++...|++++|++.++++++.+|++..+++.+|.+
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  184 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL  184 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            44555555555555555555555555555  4455555555555555555555555555555555555555555555555


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +...|++++|+..|+++++.+|++...+..++.++..
T Consensus       185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (252)
T 2ho1_A          185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV  221 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=1.7e-11  Score=127.05  Aligned_cols=120  Identities=19%  Similarity=0.097  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |.....|..+|..+.+.|++++|++.|+++++.+|++...+.++|.++...|++++|++.|+++++++|++..+++++|.
T Consensus       268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|++.|+++++++|++..++..++.++..+|
T Consensus       348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            9999999999999999999999999999999999887764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.30  E-value=5.6e-11  Score=112.31  Aligned_cols=120  Identities=14%  Similarity=0.081  Sum_probs=109.2

Q ss_pred             ChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKG-KQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      .+.....+..+|..+... |++++|+..|+++++  ..|.+..++..+|.++...|++++|++.++++++.+|++..+++
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  151 (225)
T 2vq2_A           72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK  151 (225)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence            345577899999999999 999999999999999  66777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhh
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEP-QNKAANLAEKRLRKLI  604 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~  604 (605)
                      .+|.++...|++++|...++++++.+| ++...+.....++...
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL  195 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999 9988887777776554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.29  E-value=7.7e-11  Score=117.55  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=72.8

Q ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH-HHH
Q 007401          500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNE-ALQ  578 (605)
Q Consensus       500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~  578 (605)
                      ...|++++|+..|+++++.+|+++.+++++|.++.++|++++|++.|+++++++|+++.+++++|.++...|++++ +..
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~  256 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR  256 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            3456777777777777777777777777777777777777777777777777777777777777777777777765 456


Q ss_pred             HHHHHHHhCCCCHHHHHHHH
Q 007401          579 DFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       579 ~~~~al~~~p~~~~~~~~~~  598 (605)
                      +++++++++|+++.+.....
T Consensus       257 ~~~~~~~~~P~~~~~~d~~~  276 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIKEYRA  276 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHH
Confidence            77777777777776655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.9e-12  Score=107.06  Aligned_cols=95  Identities=26%  Similarity=0.346  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN------VKAYL  561 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  561 (605)
                      .+..|+.+|..++..|+|++|++.|+++++.+|+++.+++++|.++..+|++++|+++|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHccCHHHHHHHHHH
Q 007401          562 RRGTAREALFCYNEALQDFKH  582 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~  582 (605)
                      ++|.++..+|++++|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998888776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.29  E-value=3.9e-11  Score=116.12  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=114.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS--LDKKNVKAYLR  562 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~  562 (605)
                      .+.....+..+|..+...|++++|++.|+++++.+|++..++..+|.++...+++++|++.++++++  .+|.+..+++.
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  146 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN  146 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999999  88989999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|.++...|++++|++.|+++++.+|++..++..++.++...|
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=3.4e-11  Score=124.89  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |+....+..+|..+.+.|++++|++.|+++++.+|+++.++.++|.++...|++++|++.|+++++++|+++.++++++.
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  313 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            45577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|+..|+++++++|++..++..++.++...|
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999988888876654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.29  E-value=2.3e-11  Score=116.32  Aligned_cols=120  Identities=12%  Similarity=-0.023  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLE------------------LGCFQQAEE  544 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~  544 (605)
                      +.....++.+|.++++.|+|++|+..|+++++.+|++..   +++.+|.++..                  .+++++|+.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            445678999999999999999999999999999999864   89999999986                  468999999


Q ss_pred             HHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhh
Q 007401          545 DCSKTISLDKKNVKAY-----------------LRRGTAREALFCYNEALQDFKHAMVLEPQNK---AANLAEKRLRKLI  604 (605)
Q Consensus       545 ~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~  604 (605)
                      .|+++++.+|++..++                 +.+|.+|...|++++|+..|+++++..|+++   .++..++.++..+
T Consensus       118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            9999999999987554                 6789999999999999999999999999986   5688888887776


Q ss_pred             C
Q 007401          605 G  605 (605)
Q Consensus       605 g  605 (605)
                      |
T Consensus       198 g  198 (225)
T 2yhc_A          198 Q  198 (225)
T ss_dssp             T
T ss_pred             C
Confidence            5

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.29  E-value=1.8e-11  Score=125.66  Aligned_cols=118  Identities=15%  Similarity=0.212  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....+..+|..+...|++++|+..|+++++.+|+++.+|.++|.+|...|++++|++.|+++++++|+++.+++++|.++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhhC
Q 007401          568 EALFCYNEALQDFKHAMVLEPQN------------KAANLAEKRLRKLIG  605 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~g  605 (605)
                      ..+|++++|+..|+++++++|++            ..++..++.++..+|
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            99999999999999999999873            566777777766553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.27  E-value=6.7e-11  Score=118.76  Aligned_cols=119  Identities=12%  Similarity=0.145  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..+++.+|.+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQ------------NKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~g  605 (605)
                      +...|++++|++.|+++++++|+            +..++..++.++..+|
T Consensus       250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999            7888988888887664

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=2.6e-11  Score=102.52  Aligned_cols=97  Identities=9%  Similarity=0.039  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401          506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       506 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  585 (605)
                      ++|++.|+++++.+|+++.+++++|.+|+..|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHH
Q 007401          586 LEPQ--NKAANLAEKRLRK  602 (605)
Q Consensus       586 ~~p~--~~~~~~~~~~~~~  602 (605)
                      ++|+  +......+...+.
T Consensus        82 ~~~~~~~~~~~~~l~~~l~  100 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLR  100 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHH
Confidence            9874  4555555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.26  E-value=8.2e-11  Score=101.00  Aligned_cols=104  Identities=29%  Similarity=0.485  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .....+..+|..+...|++++|+..|++++...|++...+..+|.++...+++++|++.++++++.+|++...++.+|.+
T Consensus        33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      +...|++++|...++++++.+|++
T Consensus       113 ~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          113 YYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999863

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.25  E-value=3.8e-11  Score=123.25  Aligned_cols=117  Identities=14%  Similarity=0.168  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      +..+..+|..+...|++++|+..|+++++.+|+  ++.+++++|.+|...|++++|++.|+++++++|+++.+|+++|.+
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            445667799999999999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +...|++++|+..|+++++++|++..++..++.++..+|
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999887764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.25  E-value=3.2e-11  Score=118.03  Aligned_cols=143  Identities=8%  Similarity=0.047  Sum_probs=116.5

Q ss_pred             hHHhHHHHHHhH--HHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 007401          454 FLLDTVLDLYDS--LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYS  527 (605)
Q Consensus       454 ~ll~~a~~l~~~--~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~  527 (605)
                      .++..+..+...  ..++.........     ..|.....+..+|.+++..|+|++|+..|+++++ .+.+    ..++.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~   78 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEA-----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFE   78 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHH-----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence            344455444443  4556666555432     2334456899999999999999999999999999 4433    55699


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 007401          528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK-RLRK  602 (605)
Q Consensus       528 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~  602 (605)
                      .+|.++..+|++++|++.|+++++++|+++.+++.+|.++...|++++|+++|+++++++|++..++..++ .++.
T Consensus        79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888 5543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.25  E-value=5.4e-11  Score=119.60  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN---------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  556 (605)
                      +.....+..+|..+...|++++|+..|+++++..         |.+..++.++|.++...|++++|++.|+++++++|++
T Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  269 (330)
T 3hym_B          190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN  269 (330)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence            4557889999999999999999999999999986         6778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +.+++.+|.++..+|++++|+++|+++++++|++..++..++.++.
T Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998773

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.25  E-value=7.7e-11  Score=118.44  Aligned_cols=119  Identities=15%  Similarity=0.007  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      .....|+.+|..+...| ++++|+.+|+++++.+|++..++..+|.++...+++++|++.|+++++++|++...++.+|.
T Consensus        88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  167 (330)
T 3hym_B           88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL  167 (330)
T ss_dssp             TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            44678888999999999 89999999999999999999999999999999999999999999999999998889999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|++.|+++++.+|++..++..++.++...|
T Consensus       168 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          168 EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            9999999999999999999999999888888888776553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.25  E-value=8.8e-11  Score=119.31  Aligned_cols=111  Identities=25%  Similarity=0.260  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      +++.++.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|++.|+++++++|++..+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEP---QNKAANLAEK  598 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~  598 (605)
                      ...|++++|+..|+++++++|   ++...+..++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            999999999999999999999   8888877664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.24  E-value=1.9e-11  Score=111.92  Aligned_cols=109  Identities=10%  Similarity=0.046  Sum_probs=98.4

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCH--
Q 007401          497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA-REALFCY--  573 (605)
Q Consensus       497 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--  573 (605)
                      ..+...|+|++|+..|+++++.+|++..+++.+|.+|...+++++|+..|+++++++|+++.+++.+|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          574 NEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       574 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++|+..|+++++++|++..++..++.++...|
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  129 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQA  129 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.23  E-value=6.8e-11  Score=113.02  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK---AYLR  562 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~  562 (605)
                      +..++.+|..+++.|+|++|+..|+++++..|++   ..+++.+|.+|+.+|+|++|++.|+++++.+|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            5678999999999999999999999999999876   479999999999999999999999999999999864   8999


Q ss_pred             HHHHHHH------------------ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          563 RGTAREA------------------LFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       563 la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      +|.++..                  .|++++|+..|+++++.+|++..+..
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999987                  57999999999999999999876543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.23  E-value=2.2e-11  Score=107.32  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       510 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      ..|++++.++|++...++.+|.+++..|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhC
Q 007401          590 NKAANLAEKRLRKLIG  605 (605)
Q Consensus       590 ~~~~~~~~~~~~~~~g  605 (605)
                      ++.++..++.++..+|
T Consensus        85 ~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLG  100 (142)
T ss_dssp             CTHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHcC
Confidence            9999999999987765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.21  E-value=1.8e-10  Score=92.18  Aligned_cols=86  Identities=28%  Similarity=0.423  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +..+..++.+|..++..|+|++|+..|+++++.+|++..+++++|.++...+++++|++.|+++++++|+++.+++++|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34577888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcc
Q 007401          566 AREALF  571 (605)
Q Consensus       566 ~~~~~g  571 (605)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.20  E-value=2.2e-10  Score=120.87  Aligned_cols=117  Identities=24%  Similarity=0.240  Sum_probs=108.8

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ...|..+..++.+|..+++.|+|++|+..|+++++.+|++..+++.+|.++..+|++++|++.|+++++++|++..+++.
T Consensus        20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   99 (450)
T 2y4t_A           20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ   99 (450)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 007401          563 RGTAREALFCYNEALQDFKHAMVLEPQNK---AANLAEKR  599 (605)
Q Consensus       563 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~  599 (605)
                      +|.+|..+|++++|++.|+++++++|++.   .++..+..
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999988   66655533

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.19  E-value=1.8e-10  Score=126.30  Aligned_cols=110  Identities=10%  Similarity=-0.018  Sum_probs=104.3

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .++....+..+|.++...|++++|+++|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++++++
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  132 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL  132 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc---cCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          565 TAREAL---FCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       565 ~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      .++..+   |++++|.+.|+++++.+|++...+
T Consensus       133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  165 (568)
T 2vsy_A          133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF  165 (568)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred             HHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence            999999   999999999999999999874443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.18  E-value=5.7e-10  Score=114.22  Aligned_cols=120  Identities=11%  Similarity=0.079  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------------------------
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--------------------------------------------  521 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------------------  521 (605)
                      |.....+..+|.++...|++++|++.|++++...|+                                            
T Consensus       129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  208 (368)
T 1fch_A          129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV  208 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence            445667777788888888888888888888765543                                            


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          522 -------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       522 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                             ++.++..+|.+|...|++++|++.|+++++++|+++.+++++|.++...|++++|+..|+++++++|++..++
T Consensus       209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  288 (368)
T 1fch_A          209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR  288 (368)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence                   4566777777777778888888888888877777777888888888888888888888888888888777777


Q ss_pred             HHHHHHHHhhC
Q 007401          595 LAEKRLRKLIG  605 (605)
Q Consensus       595 ~~~~~~~~~~g  605 (605)
                      ..++.++...|
T Consensus       289 ~~l~~~~~~~g  299 (368)
T 1fch_A          289 YNLGISCINLG  299 (368)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHCC
Confidence            77777766553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.18  E-value=3e-10  Score=115.31  Aligned_cols=116  Identities=11%  Similarity=0.007  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH-
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KNVKAYLRR-  563 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l-  563 (605)
                      ....+..+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|   ++..++..+ 
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            3456666666666666666666666666666666666666666666666666666666666666666   555555544 


Q ss_pred             -----------HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          564 -----------GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       564 -----------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                                 |.++...|++++|++.|+++++.+|++..++..++.++..
T Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (359)
T 3ieg_A          116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK  166 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence                       4555555666666666666555555555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=2.2e-10  Score=114.26  Aligned_cols=120  Identities=13%  Similarity=0.006  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC--
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDKKN--  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~--  556 (605)
                      ...+..|.++|.++.+.|+|++|+.+|++++++.+..      +.++.++|.+|... |++++|+.+|++++++.|++  
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence            3457899999999999999999999999999987653      57899999999996 99999999999999998754  


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHhhC
Q 007401          557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA-------ANLAEKRLRKLIG  605 (605)
Q Consensus       557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~g  605 (605)
                          ..++.++|.++..+|++++|+.+|++++++.|++..       .+..++.++..+|
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g  213 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT  213 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence                568999999999999999999999999999987653       4566666665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.13  E-value=4.6e-10  Score=114.38  Aligned_cols=100  Identities=15%  Similarity=0.112  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ..+..|.++|.++++.|+|++|+.+|+++++++|++..+++++|.+|+.++++++|+.+|+++++++|++..++++++.+
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHH-HHHHHHHHHh
Q 007401          567 REALFCYNEA-LQDFKHAMVL  586 (605)
Q Consensus       567 ~~~~g~~~~A-~~~~~~al~~  586 (605)
                      +..+|++++| .+.|++++..
T Consensus       274 ~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          274 QQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 5577777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.12  E-value=1e-10  Score=95.72  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      .+++|..+++.|+|++|+..|+++++.+|++.. +++++|.+|+.++++++|+++|+++++++|++..++++        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            357899999999999999999999999999999 99999999999999999999999999999999988865        


Q ss_pred             cCHHHHHHHHHHHHHhCCCCH
Q 007401          571 FCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~~~  591 (605)
                      +.+.+++..|+++...+|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            677888999998888887653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.12  E-value=6.8e-10  Score=99.54  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....+..+|.++...|+|++|+..|+++++.+|++..+++++|.++..+|++++|++.|+++++++|++..++..++.
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999998855555


Q ss_pred             H--HHHccCHHHHHHHHHHHHHh
Q 007401          566 A--REALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       566 ~--~~~~g~~~~A~~~~~~al~~  586 (605)
                      +  +...|++++|++.+++...+
T Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          124 CNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccchHHH
Confidence            5  88899999999999987654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.12  E-value=7.2e-10  Score=110.45  Aligned_cols=119  Identities=10%  Similarity=-0.055  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY--LELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .....+..+|.++.+.|++++|++.|+++++.+|++.......+.+.  ...+++++|+..|+++++.+|+++.+++++|
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la  207 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA  207 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            45778999999999999999999999999999999865544444333  3348899999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      .++.++|++++|++.|+++++++|+++.++..++.++...|
T Consensus       208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999998876654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.12  E-value=2.4e-10  Score=111.84  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=108.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----  552 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----  552 (605)
                      .+..+..+..+|..++..|+|++|+.+|++++.+.        |....++.++|.+|...|++++|++.|++++++    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999873        566889999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhhC
Q 007401          553 ----DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL--------EPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       553 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g  605 (605)
                          +|....+++++|.++...|++++|+..|++++++        .|....++..++.++...|
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence                4667789999999999999999999999999999        6666778888888876654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.12  E-value=4.4e-10  Score=96.37  Aligned_cols=86  Identities=16%  Similarity=0.230  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       520 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      |..+..+..+|..++..++|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 007401          600 LRKLIG  605 (605)
Q Consensus       600 ~~~~~g  605 (605)
                      ++..+|
T Consensus        81 ~~~~~~   86 (126)
T 3upv_A           81 AQIAVK   86 (126)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            887764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.12  E-value=5.9e-10  Score=89.14  Aligned_cols=85  Identities=28%  Similarity=0.385  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                      .+...++.+|.++...+++++|++.|+++++++|+++.+++++|.++...|++++|++.|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 007401          601 RKLIG  605 (605)
Q Consensus       601 ~~~~g  605 (605)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            88765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.12  E-value=1e-09  Score=115.78  Aligned_cols=120  Identities=13%  Similarity=0.027  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV---KAYLR  562 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  562 (605)
                      |.....|+.+|.+++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|++.   .++..
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  136 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ  136 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            344778888888888888888888888888888888888888888888888888888888888888888777   65544


Q ss_pred             H------------HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          563 R------------GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       563 l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +            |.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus       137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  191 (450)
T 2y4t_A          137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG  191 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence            4            566788888888888888888888888887777777766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.10  E-value=5.3e-10  Score=120.80  Aligned_cols=117  Identities=17%  Similarity=0.156  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...+++++|++.|+++++++|++..+++.+|.++.
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ..|++++|++.|+++++.+|++..++..++.++...|
T Consensus       356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  392 (537)
T 3fp2_A          356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG  392 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            8888888888888888888888888888887776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.10  E-value=8.4e-10  Score=118.30  Aligned_cols=106  Identities=30%  Similarity=0.470  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      .+.++.|+.+|..+++.|+|++|+..|+++++.+| ++.++..+|.++..+|++++|+++|+++++++|++..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35688999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      ++..+|++++|+..|+++++.+|.+..
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999999986643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.09  E-value=1.3e-09  Score=119.54  Aligned_cols=120  Identities=13%  Similarity=-0.016  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....|..+|..+.+.|++++|++.|+++++.+|++...|+.++.+|.+.|++++|++.|+++++.+|++..+|+.++.
T Consensus       370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  449 (597)
T 2xpi_A          370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM  449 (597)
T ss_dssp             TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|.+.|++++|++.|+++++++|++...+..++.++...|
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999988877654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.09  E-value=1e-09  Score=110.20  Aligned_cols=113  Identities=10%  Similarity=-0.123  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      .|..+|..+.+.|++++|+..|+++++..|.+..+|...+...+. .|++++|.+.|+++++++|+++.+|..++..+..
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555544444332 4555666666666666666556666666655555


Q ss_pred             ccCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHh
Q 007401          570 LFCYNEALQDFKHAMVL---EPQ-NKAANLAEKRLRKL  603 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~~~  603 (605)
                      .|++++|...|+++++.   .|+ ....+.....++..
T Consensus       216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            56666666666666553   332 44455554444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.08  E-value=8.5e-10  Score=121.02  Aligned_cols=115  Identities=20%  Similarity=0.234  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ....|..+|..+.+.|++++|++.|+++++.      +|++ ..+|..+|.+|...|++++|++.|+++++++|+++.+|
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            4567888888888888888888888888887      5554 77888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +.++.+|...|++++|.+.|+++++++|++..++..++.++.
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            888888888888888888888888888888888888877653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.08  E-value=3.9e-10  Score=112.46  Aligned_cols=121  Identities=12%  Similarity=-0.088  Sum_probs=113.1

Q ss_pred             CChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCC
Q 007401          484 GSIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAY----LEL---GCFQQAEEDCSKTISLDK  554 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~al~~~p  554 (605)
                      .+|+...+|+.++.++...+  +++++++.+++++..+|++..+|+.++.++    ..+   +++++++++++++++.+|
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p  141 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP  141 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC
Confidence            36778899999999999999  999999999999999999999999999999    667   789999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          555 KNVKAYLRRGTAREALFCYN--EALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       555 ~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +|..+|++++.++..+++++  +++++++++++.+|.|..++.+.+.+...+
T Consensus       142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998  999999999999999999999988876543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.07  E-value=6.3e-10  Score=91.50  Aligned_cols=70  Identities=14%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       519 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      +|+++.+++++|.+|+..|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|++.|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            5666677777777777777777777777777777777777777777777777777777777777766654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.06  E-value=5.8e-10  Score=108.99  Aligned_cols=107  Identities=16%  Similarity=0.139  Sum_probs=99.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 007401          499 AFKGKQWNKAVNYYSEAIKLN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYN  574 (605)
Q Consensus       499 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  574 (605)
                      +...++|++|+..|+++++..    |.++.+++.+|.++...|++++|++.|+++++++|+++.+++.+|.++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            344678999999999999973    5678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          575 EALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       575 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|+.+|+++++++|++..++..++.++...|
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  125 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGG  125 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence            9999999999999999999999999887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.05  E-value=1.9e-09  Score=114.66  Aligned_cols=115  Identities=15%  Similarity=0.042  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-----  553 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----  553 (605)
                      .+..|..+|.++..+|+|++|+++|++++++         +|.....|.++|.+|..+|++++|+.+|++++++.     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3667888999999999999999999999876         56678888999999999999999999999988763     


Q ss_pred             ---CCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          554 ---KKNVKAYLRRGTAREALF--CYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       554 ---p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                         +..+..+.++|.++...+  +|++|+++|+++++++|+++.++..++.+..
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~  183 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY  183 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence               356778888888776654  6899999999999999999888877776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.05  E-value=3e-10  Score=98.01  Aligned_cols=84  Identities=17%  Similarity=0.109  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HH
Q 007401          521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK-------AA  593 (605)
Q Consensus       521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~  593 (605)
                      +.+.++.++|..+++.|+|++|+++|++|++++|+++.+|+++|.+|..+|++++|+++|+++++++|++.       .+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999988764       34


Q ss_pred             HHHHHHHHHhh
Q 007401          594 NLAEKRLRKLI  604 (605)
Q Consensus       594 ~~~~~~~~~~~  604 (605)
                      +..++.++..+
T Consensus        86 ~~~lg~~~~~~   96 (127)
T 4gcn_A           86 MSRAGNAFQKQ   96 (127)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            55555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.05  E-value=6e-10  Score=111.68  Aligned_cols=108  Identities=11%  Similarity=0.126  Sum_probs=103.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 007401          498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEAL  577 (605)
Q Consensus       498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  577 (605)
                      .+...|++++|+..|+++++..|++..++..+|.++...|++++|++.++++++.+|+++.+++.+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          578 QDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       578 ~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +.|+++++.+|++..++..++.++...|
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.05  E-value=7.5e-10  Score=108.23  Aligned_cols=102  Identities=14%  Similarity=0.071  Sum_probs=95.6

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----  552 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----  552 (605)
                      .+..+..+..+|.++...|++++|+++|++++.+        +|....++.++|.+|..+|++++|++.+++++++    
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            4677899999999999999999999999999998        4667889999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          553 ----DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       553 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                          +|....+++++|.++..+|++++|+..|++++++
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                6777889999999999999999999999999987

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.1e-09  Score=91.13  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHH
Q 007401          522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANL  595 (605)
Q Consensus       522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  595 (605)
                      ++..++.+|.+++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      78888


Q ss_pred             HHHHHHHhh
Q 007401          596 AEKRLRKLI  604 (605)
Q Consensus       596 ~~~~~~~~~  604 (605)
                      .++.++..+
T Consensus        83 ~~~~~~~~~   91 (111)
T 2l6j_A           83 RLELAQGAV   91 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.03  E-value=1.4e-09  Score=98.01  Aligned_cols=87  Identities=16%  Similarity=0.065  Sum_probs=82.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       519 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ++.++..++.+|.+++..++|++|++.|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 007401          599 RLRKLIG  605 (605)
Q Consensus       599 ~~~~~~g  605 (605)
                      .++..+|
T Consensus        87 ~~~~~~g   93 (164)
T 3sz7_A           87 LARFDMA   93 (164)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcc
Confidence            9987764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=5.7e-09  Score=102.36  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=110.4

Q ss_pred             CchhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHH
Q 007401          451 GDKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSAT  524 (605)
Q Consensus       451 ~d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~  524 (605)
                      .......++..+..  ...++.....+...       +.....++.+|..+..    .+++++|+.+|+++++.+  ++.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~   75 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN   75 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence            33444444544433  24455555544421       3456788999999999    999999999999998875  789


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          525 YYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       525 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      +++++|.+|..    .+++++|++.|+++++.+  ++.+++++|.+|..    .+++++|+++|+++++.+  +..++..
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  151 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence            99999999999    999999999999999884  88999999999999    999999999999999875  6778888


Q ss_pred             HHHHHHh
Q 007401          597 EKRLRKL  603 (605)
Q Consensus       597 ~~~~~~~  603 (605)
                      ++.++..
T Consensus       152 lg~~~~~  158 (273)
T 1ouv_A          152 LGSLYDA  158 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            8877654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.03  E-value=8.3e-10  Score=109.98  Aligned_cols=107  Identities=17%  Similarity=0.147  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 007401          487 DASELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK-  558 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-  558 (605)
                      ..+..+.++|.++... |++++|+.+|++++++.|.+      ..++.++|.+|..+|+|++|+.+|+++++++|++.. 
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            4577899999999996 99999999999999998754      578999999999999999999999999999987643 


Q ss_pred             ------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          559 ------AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       559 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                            +++++|.++..+|++++|+.+|+++++++|+....
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                  68999999999999999999999999999987653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.02  E-value=2e-09  Score=116.16  Aligned_cols=117  Identities=24%  Similarity=0.187  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+..+..+|..++..|++++|+..|+++++.+|+ ..++..+|.++...+++++|++.|+++++.+|+++.+++.+|.++
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ...|++++|++.|+++++++|++..++..++.++...|
T Consensus       321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  358 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG  358 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999998887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.02  E-value=3.4e-09  Score=91.83  Aligned_cols=89  Identities=15%  Similarity=0.118  Sum_probs=83.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       517 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      ..++.++..++.+|.+++..++|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 007401          597 EKRLRKLIG  605 (605)
Q Consensus       597 ~~~~~~~~g  605 (605)
                      ++.++..+|
T Consensus        83 l~~~~~~~~   91 (137)
T 3q49_B           83 LGQCQLEME   91 (137)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999887664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.02  E-value=3e-09  Score=106.05  Aligned_cols=121  Identities=13%  Similarity=-0.001  Sum_probs=112.7

Q ss_pred             ChHHHHHHHHHHHHH----HHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCC
Q 007401          485 SIDASELLKEKGNAA----FKG---KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ--QAEEDCSKTISLDKK  555 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~  555 (605)
                      +|+....|..++.++    ...   +++++++++++++++.+|.+..+|..++.+...++.++  +++++++++++.||.
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~  178 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK  178 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence            456677899889888    666   89999999999999999999999999999999999998  999999999999999


Q ss_pred             CHHHHHHHHHHHHHccC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          556 NVKAYLRRGTAREALFC------YNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       556 ~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      |..+|.+++.++...++      ++++++++++++..+|+|..++.++..++...|
T Consensus       179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            99999999999999998      999999999999999999999999999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.01  E-value=2e-09  Score=117.27  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=114.7

Q ss_pred             CChHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 007401          484 GSIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTIS  551 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~  551 (605)
                      .+|+...+|+.++.++...++          |+++++.|+++++.+|++..+|+.+++++.+++  ++++++++++++++
T Consensus        58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~  137 (567)
T 1dce_A           58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE  137 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence            357778999999999999888          999999999999999999999999999999999  77999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          552 LDKKNVKAYLRRGTAREALF-CYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       552 ~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +||+|..+|++++.++...| .+++++++++++++.+|.|..+|.+.+.++..+
T Consensus       138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999999 999999999999999999999999999887653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.01  E-value=2.3e-09  Score=91.54  Aligned_cols=81  Identities=15%  Similarity=0.088  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       525 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .++.+|..+++.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++|++..++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             C
Q 007401          605 G  605 (605)
Q Consensus       605 g  605 (605)
                      |
T Consensus        99 g   99 (121)
T 1hxi_A           99 H   99 (121)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.00  E-value=1.7e-09  Score=91.53  Aligned_cols=85  Identities=15%  Similarity=0.038  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|.....++.+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|++.++++++.+|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999988765444


Q ss_pred             HHHHH
Q 007401          565 TAREA  569 (605)
Q Consensus       565 ~~~~~  569 (605)
                      .+...
T Consensus       103 ai~~~  107 (117)
T 3k9i_A          103 AILFY  107 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.00  E-value=1.1e-09  Score=110.38  Aligned_cols=121  Identities=11%  Similarity=-0.075  Sum_probs=113.8

Q ss_pred             CChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-G-CFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      .+|+....|..++.++...+ +++++++.+++++..+|++..+|+.|+.++..+ + ++++++++++++++.+|+|..+|
T Consensus        83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW  162 (349)
T 3q7a_A           83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW  162 (349)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred             hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence            35677899999999999999 599999999999999999999999999999998 7 89999999999999999999999


Q ss_pred             HHHHHHHHHccCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          561 LRRGTAREALFCYN--------EALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       561 ~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++.++.+.++++        +++++++++++.+|.|..++.+.+.+...+
T Consensus       163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            99999999999888        999999999999999999999999887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.99  E-value=5.9e-10  Score=98.54  Aligned_cols=73  Identities=15%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQW----------NKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----------CFQQAE  543 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~  543 (605)
                      +|+.++.|+++|.++...+++          ++|+..|+++|+++|++..+|+++|.+|..++           +|++|+
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            467799999999999998875          59999999999999999999999999999885           899999


Q ss_pred             HHHHHHHhcCCCCH
Q 007401          544 EDCSKTISLDKKNV  557 (605)
Q Consensus       544 ~~~~~al~~~p~~~  557 (605)
                      ++|++|++++|++.
T Consensus       112 ~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          112 QFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhCCCCH
Confidence            99999999999985

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.99  E-value=2.3e-09  Score=116.69  Aligned_cols=120  Identities=9%  Similarity=0.074  Sum_probs=112.6

Q ss_pred             ChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      +|+..++|..+++++.+.+  +|++++++++++++.+|.+..+|..++.+...++ .++++++++.++++.+|+|..+|+
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            4667899999999999999  7799999999999999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHHHHc--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          562 RRGTAREAL--------------FCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       562 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +++.++..+              +.++++++++++++.++|+|..+|.+.+.++...
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence            999999885              6789999999999999999999999999887543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.98  E-value=3e-09  Score=90.67  Aligned_cols=88  Identities=18%  Similarity=0.056  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....+..+|.++...|++++|+..|++++..+|++..+++.+|.++..++++++|++.|+++++++|++..+++.++.
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  122 (131)
T 2vyi_A           43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI  122 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            34478899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCH
Q 007401          566 AREALFCY  573 (605)
Q Consensus       566 ~~~~~g~~  573 (605)
                      ++..+|++
T Consensus       123 ~~~~~~~~  130 (131)
T 2vyi_A          123 AELKLREA  130 (131)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhcC
Confidence            99998875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=4.2e-09  Score=105.70  Aligned_cols=121  Identities=9%  Similarity=-0.035  Sum_probs=100.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .|.....|..+|..+.+.|++++|...|++++++.|+++. +|.++|.++...|++++|.+.|+++++.+|.+..+|...
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3556778888888888889999999999999988888876 888888888888889999999999998888888887766


Q ss_pred             HHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          564 GTAREA-LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       564 a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +..... .|++++|.+.|+++++.+|++..++..++.++...|
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  217 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            665443 688999999999999999988888888887776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.98  E-value=2.5e-09  Score=99.73  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+.++|.++++.|+|++|+.+|+++++++|++..+++++|.+|..++++++|+++|+++++++|++..++..++.++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHH-HHHHHHHH
Q 007401          569 ALFCYNEAL-QDFKHAMV  585 (605)
Q Consensus       569 ~~g~~~~A~-~~~~~al~  585 (605)
                      .+++++++. ..|.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999998887 45554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.98  E-value=1.6e-09  Score=89.74  Aligned_cols=87  Identities=21%  Similarity=0.250  Sum_probs=82.7

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHH
Q 007401          518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ--NKAANL  595 (605)
Q Consensus       518 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~  595 (605)
                      ++|++...++.+|.+++..+++++|+..|+++++++|++..+++++|.++...|++++|+++|+++++++|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhh
Q 007401          596 AEKRLRKLI  604 (605)
Q Consensus       596 ~~~~~~~~~  604 (605)
                      .++.++..+
T Consensus        81 ~l~~~~~~~   89 (112)
T 2kck_A           81 AKADALRYI   89 (112)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHH
Confidence            999887665

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.97  E-value=2.3e-09  Score=94.97  Aligned_cols=100  Identities=21%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----  556 (605)
                      ..+..+..+|..++..|++++|+.+|++++++.+..      ..++.++|.++...+++++|++.+++++++.++.    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            345666666777777777777777777766654321      2356666777777777777777777666654322    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          557 --VKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       557 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                        ..+++++|.++...|++++|++.+++++++
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              446666677777777777777777666655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.97  E-value=1.4e-09  Score=116.47  Aligned_cols=111  Identities=18%  Similarity=0.129  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT------YYSNRAAAYLE---LGCFQQAEEDCSKTISLDKKNVK  558 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~  558 (605)
                      ....+..+|..+...|++++|+..|++++...|++..      ++..+|.++..   .|++++|++.|+++++++|++..
T Consensus       371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  450 (514)
T 2gw1_A          371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ  450 (514)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence            3455666666666666666666666666666665533      66666666666   66666666666666666666666


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      +++.+|.++...|++++|...|+++++++|++..++..+.
T Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          451 AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            6666666666666666666666666666666666555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.97  E-value=2.9e-09  Score=110.20  Aligned_cols=120  Identities=18%  Similarity=0.218  Sum_probs=80.5

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-  556 (605)
                      .+..+..+..+|.+++..|++++|+.+|++++++.+.       ...++.++|.+|..+|++++|++.|++++++.++. 
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            3446677777777777777777777777777766332       24567777777777777777777777777664322 


Q ss_pred             -----HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHhh
Q 007401          557 -----VKAYLRRGTAREALFCYNEALQDFKHAMV-----LE-PQNKAANLAEKRLRKLI  604 (605)
Q Consensus       557 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~~~~~~  604 (605)
                           ..+++++|.+|..+|++++|+.+|+++++     .+ |....++..++.++..+
T Consensus       219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL  277 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence                 23677777777777777777777777777     34 55566666666666544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.97  E-value=3.5e-09  Score=93.77  Aligned_cols=83  Identities=16%  Similarity=0.197  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-------NVK-----AYLRRGTAREALFCYNEALQDFKHAMVL----  586 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~----  586 (605)
                      +..+.++|..+++.|+|++|+..|++|++++|+       +..     +|+++|.++..+|+|++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567899999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHhhC
Q 007401          587 ---EPQNKAAN----LAEKRLRKLIG  605 (605)
Q Consensus       587 ---~p~~~~~~----~~~~~~~~~~g  605 (605)
                         +|++..++    +..+.++..+|
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lg  116 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLG  116 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCC
Confidence               99999999    99999887765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.96  E-value=2.8e-09  Score=91.43  Aligned_cols=87  Identities=20%  Similarity=0.166  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....++.+|.+++..|++++|+.+|+++++.+|++..+++++|.++..++++++|++.|+++++++|++..+++.++.
T Consensus        47 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  126 (133)
T 2lni_A           47 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR  126 (133)
T ss_dssp             TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccC
Q 007401          566 AREALFC  572 (605)
Q Consensus       566 ~~~~~g~  572 (605)
                      ++..+|+
T Consensus       127 ~~~~~~~  133 (133)
T 2lni_A          127 CMMAQYN  133 (133)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9988774

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.96  E-value=6.2e-09  Score=95.06  Aligned_cols=83  Identities=11%  Similarity=0.002  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHH
Q 007401          503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRGTAREALFCYNEALQDF  580 (605)
Q Consensus       503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~  580 (605)
                      ++..+|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|++  ..++++++.++..+|++++|+..|
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            344568999999999999999999999999999999999999999999999976  669999999999999999999999


Q ss_pred             HHHHH
Q 007401          581 KHAMV  585 (605)
Q Consensus       581 ~~al~  585 (605)
                      ++++.
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.96  E-value=4.8e-10  Score=119.84  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |..+..|.++|.++.++|+|++|++.|+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++.+++.
T Consensus        37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H--HHHccCHHHHHHHHH-----------HHHHhCCCC
Q 007401          566 A--REALFCYNEALQDFK-----------HAMVLEPQN  590 (605)
Q Consensus       566 ~--~~~~g~~~~A~~~~~-----------~al~~~p~~  590 (605)
                      +  +..+|++++|++.++           ++++++|+.
T Consensus       117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          117 CNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9  889999999999999           777777653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.96  E-value=6.4e-10  Score=113.39  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA-RE  568 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~  568 (605)
                      ..|+++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998 45


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHH
Q 007401          569 ALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                      ..++++++.+.|++++..+|++..
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788899999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.95  E-value=3e-09  Score=110.78  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=107.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTISL------DK  554 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p  554 (605)
                      .+..+..+..+|..++..|+|++|+.+|+++++..|++.    .+++.+|.+|+.+|++++|++.|++++++      ++
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            456788899999999999999999999999999999986    58999999999999999999999999988      56


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhh
Q 007401          555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVL------EPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~  604 (605)
                      ....+++.+|.+|...|++++|+.+|++++++      .+....++..++.++...
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence            67889999999999999999999999999998      455566777777766543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.95  E-value=2.3e-09  Score=106.56  Aligned_cols=121  Identities=16%  Similarity=0.181  Sum_probs=107.3

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD---  553 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---  553 (605)
                      .+..+..+..+|.++...|++++|+.+|++++..        .+....++.++|.+|...|++++|++.+++++++.   
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999999999987        35567899999999999999999999999999884   


Q ss_pred             -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhhC
Q 007401          554 -----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVL--------EPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       554 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g  605 (605)
                           |....+++++|.++...|++++|+++|++++++        .|....++..++.++...|
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  209 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG  209 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence                 556678999999999999999999999999998        6666777888888776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.95  E-value=1.3e-08  Score=99.32  Aligned_cols=140  Identities=11%  Similarity=-0.003  Sum_probs=110.4

Q ss_pred             chhHHhHHHHHHh--HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 007401          452 DKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYS  527 (605)
Q Consensus       452 d~~ll~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~  527 (605)
                      +..-+..+..+..  ...++.+......     ...|... .++.+|..+++.++|++|+.+|++++...+..  ..+++
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~-----~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~  175 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAP-----VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV  175 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSC-----CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence            4444555554533  3455555554432     2345666 89999999999999999999999887753221  45899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          528 NRAAAYLELGCFQQAEEDCSKTISLD--KK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       528 ~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ++|.++..+|++++|+++|++++...  |. .+.+++++|.++.++|+.++|...|++++..+|+ ..+...+.
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999999999999999998654  65 6679999999999999999999999999999999 77766553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.95  E-value=2.4e-08  Score=97.81  Aligned_cols=110  Identities=22%  Similarity=0.229  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Q 007401          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~  559 (605)
                      ....++.+|..+..    .+++++|+.+|+++++.  +++.+++++|.+|..    .+++++|+++|+++++.+  ++.+
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  148 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG  148 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence            57788899999999    99999999999999987  488999999999999    999999999999999876  6889


Q ss_pred             HHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          560 YLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       560 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++++|.+|..    .+++++|+++|+++++.  ++..++..++.++..
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            9999999998    99999999999999987  467888888887765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=2.6e-09  Score=106.22  Aligned_cols=123  Identities=13%  Similarity=-0.000  Sum_probs=107.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  552 (605)
                      ..+.+..+..+..+|..++..|++++|+.+|++++++        .+....++..+|.+|...|++++|+..+++++++ 
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999999995        5667889999999999999999999999999987 


Q ss_pred             -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhh
Q 007401          553 -------DKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE--------PQNKAANLAEKRLRKLI  604 (605)
Q Consensus       553 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~  604 (605)
                             ++....+++++|.++...|++++|+..|++++++.        |....++..++.++...
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  166 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ  166 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence                   35567899999999999999999999999999884        44456677777776554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.94  E-value=2.8e-09  Score=95.81  Aligned_cols=92  Identities=15%  Similarity=0.018  Sum_probs=82.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV-KAYLRR  563 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l  563 (605)
                      .+.....|.++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++. .+...+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3556789999999999999999999999999999999999999999999999999999999999999999999 677778


Q ss_pred             HHHHHHccCHHHH
Q 007401          564 GTAREALFCYNEA  576 (605)
Q Consensus       564 a~~~~~~g~~~~A  576 (605)
                      ..+....+++++.
T Consensus       139 ~~~~~~~~~~~~~  151 (162)
T 3rkv_A          139 KIVTERRAEKKAD  151 (162)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHH
Confidence            8887766555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.94  E-value=1.5e-08  Score=101.61  Aligned_cols=118  Identities=9%  Similarity=0.082  Sum_probs=109.4

Q ss_pred             ChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      +|.....|..++.++...+  ++++++++++++++.+|.|..+|..++.+....+. ++++++++.++++.+|+|..+|+
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            4667899999999999998  49999999999999999999999999999999998 69999999999999999999999


Q ss_pred             HHHHHHHHc--------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          562 RRGTAREAL--------------FCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       562 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +++.++..+              +.++++++++.+++..+|+|..++.+...++.
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999888              56999999999999999999999987766543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.93  E-value=4e-09  Score=112.16  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....|.++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+.+|+++++++|++..++.+++.++
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHH
Q 007401          568 EALFCYNEALQD  579 (605)
Q Consensus       568 ~~~g~~~~A~~~  579 (605)
                      ..++++++|...
T Consensus       396 ~~~~~~~~a~~~  407 (457)
T 1kt0_A          396 KKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.93  E-value=1.5e-08  Score=100.73  Aligned_cols=118  Identities=11%  Similarity=0.018  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCH-
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTI---SLDKKNV-  557 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~-  557 (605)
                      ....++.+|..+...|+|++|+.+|++++...+..      ..+++++|.+|..+++|++|+.+|++++   +..+++. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            44556778888888899999999999998765443      5688899999999999999999999998   4455543 


Q ss_pred             ---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhhC
Q 007401          558 ---KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ------NKAANLAEKRLRKLIG  605 (605)
Q Consensus       558 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g  605 (605)
                         .+++++|.+|..+|+|++|++++++++++.++      -..++..++.++..+|
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g  250 (293)
T 2qfc_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence               58889999999999999999999999887532      1566777777776554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.92  E-value=4.1e-09  Score=86.55  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLR  562 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  562 (605)
                      +|+....|+.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|++.|++++++.|+  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999998663  3444444


Q ss_pred             HHHHHHHc
Q 007401          563 RGTAREAL  570 (605)
Q Consensus       563 la~~~~~~  570 (605)
                      +...+...
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            44444333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.92  E-value=7.2e-09  Score=110.07  Aligned_cols=118  Identities=13%  Similarity=0.030  Sum_probs=96.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELG--CFQQAEEDCSKTISLDK  554 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p  554 (605)
                      .+..+..|.++|.+|+.+|+|++|+.+|++++++.        ++.+..+.++|.++...+  +|++|+++|+++++++|
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            34557788899999999999999999999998763        356788888888877654  68999999999999999


Q ss_pred             CCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          555 KNVKAYLRRGTAREA---LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       555 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +++.++..++.++..   .+++++|++.|+++++++|++..++..++..+.
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~  220 (472)
T 4g1t_A          170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH  220 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence            999999888887544   466788889999999999988888777765443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.91  E-value=2.1e-08  Score=100.66  Aligned_cols=122  Identities=12%  Similarity=0.094  Sum_probs=112.5

Q ss_pred             CCChHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTI  550 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al  550 (605)
                      ..+|+....|+..+.++...++          +++++.++++++..+|.+..+|+.++.++..++  .++++++++.+++
T Consensus        58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l  137 (331)
T 3dss_A           58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  137 (331)
T ss_dssp             TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence            3467788899999999887765          799999999999999999999999999999999  4999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          551 SLDKKNVKAYLRRGTAREALFC-YNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       551 ~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++||.|..+|++++.++...|. ++++++++.++++.+|.|..++.+...++..+
T Consensus       138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999 69999999999999999999999998877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=4.6e-09  Score=104.54  Aligned_cols=117  Identities=11%  Similarity=0.043  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL-------DKK  555 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~  555 (605)
                      ...+..+|..+...++|++|+.+|++++...+..      ..++.++|.+|..+|+|++|+.+|+++++.       .+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            4455569999999999999999999999965432      447999999999999999999999999953       222


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401          556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG  605 (605)
Q Consensus       556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g  605 (605)
                      ...+++++|.+|..+|+|++|++++++++++.++.      ..++..++.++..+|
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence            34589999999999999999999999999987544      678888888887664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.89  E-value=8.6e-09  Score=106.28  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....|.++|.++++.|+|++|+++|+++++++|+++.+++++|.+|..++++++|+++|+++++++|++..++..++.
T Consensus       270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHH
Q 007401          566 AREALFCYNEALQD  579 (605)
Q Consensus       566 ~~~~~g~~~~A~~~  579 (605)
                      ++..+++++++.+.
T Consensus       350 ~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          350 VKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.88  E-value=5.9e-09  Score=96.81  Aligned_cols=101  Identities=11%  Similarity=-0.004  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC-
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---DKKN-  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~-  556 (605)
                      ..+..+..+|..+...|+|++|+.+|++++.+      .+....++.++|.+|...|++++|++.+++++++   .+++ 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            45777888888888888888888888888873      3445677888888888888888888888888877   3322 


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                         ..+++++|.++...|++++|+..+++++++.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               4567788888888888888888888887653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.87  E-value=8.8e-09  Score=106.55  Aligned_cols=104  Identities=13%  Similarity=0.046  Sum_probs=94.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LD  553 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~  553 (605)
                      .+..+..+..+|.++...|+|++|+++|++++++.+..      ..++.++|.+|..+|++++|+++++++++     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            45678899999999999999999999999999885533      35899999999999999999999999999     46


Q ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          554 -KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       554 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                       |..+.+++++|.++..+|++++|+.++++++++.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             77889999999999999999999999999998843

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.87  E-value=5.8e-09  Score=104.64  Aligned_cols=104  Identities=17%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----  556 (605)
                      ..+..+.++|.++.. |+|++|+++|++++.+.+..      ..++.++|.+|..+|+|++|+++|++++++.+++    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            346778888888877 88888888888888876543      5678888888888888888888888888876543    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 007401          557 --VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA  592 (605)
Q Consensus       557 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  592 (605)
                        ..+++.++.++..+|++++|+.+|++++ ++|+...
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence              3477778888888888888888888888 8887754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.85  E-value=2.3e-08  Score=87.32  Aligned_cols=100  Identities=15%  Similarity=0.068  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 007401          504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLD-K-KNVKAYLRRGTAREALFCYNEALQ  578 (605)
Q Consensus       504 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~  578 (605)
                      ....+.+.|++.+..++.+.++.+++|+++.+.+   ++++++..++..++.+ | ++.+.+|++|..++++|+|++|.+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3456777888888888999999999999999988   6789999999999998 7 578999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          579 DFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       579 ~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +++++++++|+|.++......+..+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999998887776554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.85  E-value=1e-08  Score=101.91  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  556 (605)
                      ...+..+..+|.++...|+|++|+.+|+++++.       .+....+++++|.+|..+++|++|++++++++++.++.  
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence            356778999999999999999999999999953       22335689999999999999999999999999886543  


Q ss_pred             ----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Q 007401          557 ----VKAYLRRGTAREALF-CYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 ----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  587 (605)
                          +.+++++|.++..+| ++++|+++|++++.+.
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                789999999999999 5799999999999764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.85  E-value=4.4e-08  Score=98.75  Aligned_cols=116  Identities=10%  Similarity=0.060  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+.+..+.....+.+..++|++.+++++.++|++..+|+.++.++..++ .+++++++++++++.+|++..+|+.++.++
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL  133 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3344444445555666689999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             HHc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          568 EAL-F-CYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       568 ~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ... + ++++++++++++++.+|+|..++.+.+.+...+
T Consensus       134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l  172 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF  172 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            998 8 899999999999999999999999998887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.84  E-value=1.2e-08  Score=101.99  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKKNV  557 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~  557 (605)
                      ....++..|..++..|++++|+..|+++++..|++    ..++..+|.++...|++++|++.+++++++      .+...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45678889999999999999999999999999998    578899999999999999999999999887      44557


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKL  603 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~  603 (605)
                      .+++.+|.++...|++++|+..+++++++.+..      ..++..++.++..
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  135 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA  135 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999886543      2255556655543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.83  E-value=1.5e-08  Score=95.65  Aligned_cols=111  Identities=13%  Similarity=0.002  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CCH
Q 007401          488 ASELLKEKGNAAFKGK----QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK--KNV  557 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p--~~~  557 (605)
                      .+..++.+|..|.. +    ++++|+.+|+++++  +.++.+++++|.+|..    .+++++|+++|+++.+.++  +++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  125 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV  125 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence            46777888888777 6    78888888888854  4678888888888876    7788888888888888777  347


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          558 KAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       558 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .+++++|.+|..    .+++++|+.+|+++.++ +++..+...++.++.
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            888888888888    77888888888888887 566677777777664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.83  E-value=3.4e-08  Score=83.18  Aligned_cols=85  Identities=28%  Similarity=0.440  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      .....++.+|..+...|++++|+..|++++...|++...+..+|.++...+++++|+..++++++++|+++.++..++.+
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  120 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA  120 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcc
Q 007401          567 REALF  571 (605)
Q Consensus       567 ~~~~g  571 (605)
                      +...|
T Consensus       121 ~~~~g  125 (125)
T 1na0_A          121 KQKQG  125 (125)
T ss_dssp             HHHHC
T ss_pred             HHhcc
Confidence            87764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.82  E-value=1.3e-08  Score=96.14  Aligned_cols=112  Identities=9%  Similarity=-0.035  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG----CFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ..+..++.+|..++..+++++|+++|+++++.  .++.+++++|.+|.. +    ++++|+++|+++.+  +.++.++++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            34788999999999999999999999999875  689999999999988 7    89999999999965  578999999


Q ss_pred             HHHHHHH----ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHh
Q 007401          563 RGTAREA----LFCYNEALQDFKHAMVLEPQ--NKAANLAEKRLRKL  603 (605)
Q Consensus       563 la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~  603 (605)
                      +|.+|..    .+++++|+++|+++.+..+.  ++.++..++.++..
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            9999988    89999999999999998873  48888888888754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.81  E-value=1.3e-08  Score=102.16  Aligned_cols=103  Identities=10%  Similarity=0.035  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  556 (605)
                      ...+..+.++|.++.+.|+|++|+.+|++++++.+.      ...++.++|.+|.. +++++|+.+|++++++.+..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            455667777777777777777777777777766432      14566677777766 77777777777777665432   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                         ..++.++|.+|..+|+|++|+.+|++++++.++
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               456677777777777777777777777776543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.80  E-value=4.6e-08  Score=81.50  Aligned_cols=84  Identities=19%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      .+..++.+|.+++..+++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|++..++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HhhC
Q 007401          602 KLIG  605 (605)
Q Consensus       602 ~~~g  605 (605)
                      ...|
T Consensus        83 ~~~~   86 (118)
T 1elw_A           83 EFLN   86 (118)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            7654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.80  E-value=1.9e-08  Score=104.03  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKKN  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~  556 (605)
                      ..+..+..+|..++..|+|++|+.+|+++++..|++    ..++..+|.+++..|++++|+..+++++++      .+..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            346788999999999999999999999999999998    468999999999999999999999999887      3445


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh
Q 007401          557 VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKL  603 (605)
Q Consensus       557 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~  603 (605)
                      ..+++.+|.++...|++++|+..+++++++.+..      ..++..++.++..
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            7799999999999999999999999999987643      3356666665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.80  E-value=3.6e-08  Score=97.84  Aligned_cols=99  Identities=10%  Similarity=-0.031  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRG  564 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la  564 (605)
                      +....+...+..+.+.+++++|+..|++++..+|++..+++++|.++...|++++|++.|+++++.+|++  ..++.+++
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            3345555666667777777888888999999999999999999999999999999999999999999998  88999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~  585 (605)
                      .++..+|+.++|...|++++.
T Consensus       263 ~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          263 EILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999885

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.80  E-value=3.7e-08  Score=80.12  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 007401          526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK-AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN--LAEKRLR  601 (605)
Q Consensus       526 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~  601 (605)
                      .+.+|.+++..+++++|++.|+++++++|+++. +++++|.++..+|++++|+++|+++++++|++..++  ..+..++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL   81 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999998877  4444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.80  E-value=1.2e-08  Score=105.39  Aligned_cols=119  Identities=18%  Similarity=0.199  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  556 (605)
                      +..+..+..+|..+...|++++|+.+|++++++.++.      ..++.++|.+|..+|++++|+.++++++++.++.   
T Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence            4455666777777777777777777777776654433      2266677777777777777777777776665544   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhh
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLI  604 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~  604 (605)
                         ..+++.+|.++...|++++|+..|++++++.+..      ..++..++.++...
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  320 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL  320 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence               5566667777777777777777777776664432      34455555554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.79  E-value=3.1e-08  Score=87.58  Aligned_cols=104  Identities=17%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----  555 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----  555 (605)
                      ...+..+..+|..+...|++++|+++|++++.+.+..      ..++.++|.++...+++++|++.+++++++.+.    
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  125 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  125 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence            3456789999999999999999999999999876543      678999999999999999999999999987432    


Q ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          556 --NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       556 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                        ...+++.+|.++...|++++|.+.+++++++...
T Consensus       126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence              2568999999999999999999999999987543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.79  E-value=2.7e-08  Score=102.69  Aligned_cols=102  Identities=18%  Similarity=-0.014  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LDKK  555 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~  555 (605)
                      ..+..+..+|.++...|+|++|+++|++++++.+      ....++.++|.+|..+|++++|+++++++++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            4577788888888888888888888888887632      1245777888888888888888888888888     6777


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       556 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ...+++++|.++..+|++++|+.++++++++.+
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            777888888888888888888888888888754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.79  E-value=4e-08  Score=101.44  Aligned_cols=139  Identities=10%  Similarity=-0.056  Sum_probs=100.1

Q ss_pred             HHHHHhhhccCCCCC-CCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCH
Q 007401          466 LQEQVNIASNLVPLP-DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK-----LNGTSATYYSNRAAAYLELGCF  539 (605)
Q Consensus       466 ~~e~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~  539 (605)
                      ..++.....+..... ........+..+.++|.++...|++++|+.+|++++.     .+|....++.++|.+|..+|++
T Consensus       198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~  277 (378)
T 3q15_A          198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT  277 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence            445555554443222 2233445678899999999999999999999999999     7788899999999999999999


Q ss_pred             HHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhhC
Q 007401          540 QQAEEDCSKTISLD-----KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN---KAANLAEKRLRKLIG  605 (605)
Q Consensus       540 ~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g  605 (605)
                      ++|+.++++++++.     +.....+..++.++...++.+...+.+...-+ ....   ......++.++...|
T Consensus       278 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g  350 (378)
T 3q15_A          278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC  350 (378)
T ss_dssp             HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC
Confidence            99999999999984     44455677788888888888444444433333 3222   234555666665543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.78  E-value=8e-08  Score=82.04  Aligned_cols=87  Identities=9%  Similarity=0.028  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      +.....++.+|.++++.|+|++|+..|+++++.+|++   +.+++.+|.++..+|++++|++.|+++++.+|+++.+...
T Consensus        36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            3445889999999999999999999999999999999   8999999999999999999999999999999999988777


Q ss_pred             HHHHHHHccC
Q 007401          563 RGTAREALFC  572 (605)
Q Consensus       563 la~~~~~~g~  572 (605)
                      +..+....++
T Consensus       116 ~~~l~~l~~~  125 (129)
T 2xev_A          116 QERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHhh
Confidence            7666555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.78  E-value=3.5e-08  Score=79.62  Aligned_cols=73  Identities=16%  Similarity=0.117  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          519 NGTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       519 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      +|+++..+..+|.+++..++   .++|...+++++++||+++.+++.+|..+++.|+|++|+..|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            58889999999999987666   78999999999999999999999999999999999999999999999988853

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=5.2e-08  Score=85.15  Aligned_cols=89  Identities=13%  Similarity=0.136  Sum_probs=83.1

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       517 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      ...+.+...++.+|.+++..++|++|++.|+++++++|++   ..+++++|.++...|++++|+..|+++++++|++..+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3467889999999999999999999999999999999988   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 007401          594 NLAEKRLRKLIG  605 (605)
Q Consensus       594 ~~~~~~~~~~~g  605 (605)
                      +..++.++..+|
T Consensus       102 ~~~~a~~~~~~~  113 (148)
T 2dba_A          102 LYRRSQALEKLG  113 (148)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC
Confidence            999998887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.78  E-value=3.2e-08  Score=83.13  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--NVKAYLRR  563 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l  563 (605)
                      |.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|+  +......+
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l   95 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKEL   95 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            4557899999999999999999999999999999999999999999999999999999999999999874  44555555


Q ss_pred             HHHHHHcc
Q 007401          564 GTAREALF  571 (605)
Q Consensus       564 a~~~~~~g  571 (605)
                      ...+..++
T Consensus        96 ~~~l~~l~  103 (115)
T 2kat_A           96 QVFLRRLA  103 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            54444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=2.6e-07  Score=91.71  Aligned_cols=119  Identities=10%  Similarity=0.013  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA------TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----  556 (605)
                      .....+...+..++..|+|++|++.|+++++..+...      ..++.+|.++...+++++|+..+++++++.+..    
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            3456677889999999999999999999999887654      446778999999999999999999999875443    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHhhC
Q 007401          557 --VKAYLRRGTAREALFCYNEALQDFKHAM---VLEPQNK----AANLAEKRLRKLIG  605 (605)
Q Consensus       557 --~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~~~~~~~~~g  605 (605)
                        ..+++++|.+|..+|++++|+.+|++++   +..|++.    .++..++.++..+|
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~  210 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS  210 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence              5699999999999999999999999999   5566653    56777777776543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.74  E-value=1.2e-08  Score=106.23  Aligned_cols=120  Identities=17%  Similarity=0.196  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  556 (605)
                      +..+..+..+|..++..|+|++|+.+|++++++.++.      ..++.++|.+|..+|++++|++.|++++++.++.   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            4566788888888888888888888888888776543      2377888888888888888888888888876643   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG  605 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g  605 (605)
                         ..+++.+|.++...|++++|+++|++++++.++.      ..++..++.++..+|
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  357 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG  357 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence               5678888888888888888888888888775432      345666666665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.74  E-value=5.1e-08  Score=96.39  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=82.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       520 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      |+++..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|++.|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 007401          600 LRKLIG  605 (605)
Q Consensus       600 ~~~~~g  605 (605)
                      ++..+|
T Consensus        81 ~~~~~g   86 (281)
T 2c2l_A           81 CQLEME   86 (281)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            887764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.70  E-value=2.6e-08  Score=99.52  Aligned_cols=120  Identities=19%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN---  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  556 (605)
                      +..+..+..+|..++..|++++|+.+|++++++.+..      ..++.++|.++...|++++|++.+++++++.++.   
T Consensus       180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (338)
T 3ro2_A          180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  259 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence            4567889999999999999999999999999875432      3488999999999999999999999999886654   


Q ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401          557 ---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG  605 (605)
Q Consensus       557 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g  605 (605)
                         ..+++.+|.++...|++++|+..+++++++.+..      ..++..++.++...|
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g  317 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG  317 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence               6788999999999999999999999998875532      345666666665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.69  E-value=1.2e-07  Score=102.56  Aligned_cols=120  Identities=8%  Similarity=-0.045  Sum_probs=103.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .|+....|..++..+.+.|++++|...|+++++..|+++ .+|.+++.++...+++++|.+.|++|++..|.+...+...
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            345688999999999999999999999999999999985 6899999999889999999999999999888877777776


Q ss_pred             HHH-HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          564 GTA-REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       564 a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +.+ +...|++++|.+.|+++++.+|++..++..++.++...
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~  438 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  438 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence            655 44689999999999999999999888888887776544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.68  E-value=6.6e-08  Score=82.22  Aligned_cols=85  Identities=14%  Similarity=-0.014  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHH
Q 007401          521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN-------KAA  593 (605)
Q Consensus       521 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~  593 (605)
                      +.+..++.+|.+++..+++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|++++++.|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999998877       888


Q ss_pred             HHHHHHHHHhhC
Q 007401          594 NLAEKRLRKLIG  605 (605)
Q Consensus       594 ~~~~~~~~~~~g  605 (605)
                      +..++.++...|
T Consensus        82 ~~~la~~~~~~~   93 (131)
T 1elr_A           82 YARIGNSYFKEE   93 (131)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            888888876654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=4.6e-08  Score=95.46  Aligned_cols=116  Identities=13%  Similarity=0.022  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--VKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~  566 (605)
                      -+.+..++..+...|+|++|.+.|+..+...|++. .++.+|.++++.++|++|+..|+++.+...+.  ..+++++|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45667789999999999999999999999999888 99999999999999999999999887764221  3589999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhhC
Q 007401          567 REALFCYNEALQDFKHAMVLE--PQ-NKAANLAEKRLRKLIG  605 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~g  605 (605)
                      +..+|++++|+.+|++++.-.  |. ...++...+.++..+|
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG  222 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG  222 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence            999999999999999998544  54 5568888888887765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.66  E-value=7.7e-08  Score=89.14  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---NGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK--K  555 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~  555 (605)
                      .+..+..+..+|..+...|++++|+.+|++++.+   .++    ...++.++|.++..+|++++|+..+++++++.+  .
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            4567889999999999999999999999999988   443    356789999999999999999999999997632  2


Q ss_pred             C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          556 N----VKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       556 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      +    ..++.++|.++...|++++|..++++++++..
T Consensus       142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            2    23578999999999999999999999998753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.62  E-value=3.2e-07  Score=75.77  Aligned_cols=77  Identities=16%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      +..++.+|..+++.++|.+|+.+|++|++..       .....++..+|.+++++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            5678899999999999999999999999863       345789999999999999999999999999999999999888


Q ss_pred             HHHH
Q 007401          562 RRGT  565 (605)
Q Consensus       562 ~la~  565 (605)
                      ++..
T Consensus        85 n~~~   88 (104)
T 2v5f_A           85 NLKY   88 (104)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            8873

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.59  E-value=5.8e-07  Score=78.43  Aligned_cols=98  Identities=19%  Similarity=0.106  Sum_probs=88.3

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA-  569 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-  569 (605)
                      +|..|...+.+++|+++|+++.+.  .++.+++++|.+|..    .+++++|+++|+++.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            899999999999999999999987  789999999999999    89999999999999987  689999999999999 


Q ss_pred             ---ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          570 ---LFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       570 ---~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                         .+++++|+++|+++.+.  .+..+...++
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               99999999999999987  4555555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.59  E-value=3.1e-07  Score=94.26  Aligned_cols=102  Identities=11%  Similarity=-0.004  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD--------  553 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------  553 (605)
                      .+..+..+|..++..|++++|+..|++++.+.+..      ..++.++|.++...|++++|++.+++++++.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            44566777777777777777777777777654432      2345677777777777777777777777654        


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       554 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      |....++.++|.++...|++++|...+++++++.+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            223456666777777777777777777777777654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.58  E-value=5.9e-07  Score=90.35  Aligned_cols=105  Identities=16%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------
Q 007401          488 ASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAY-------------------------------  533 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~-------------------------------  533 (605)
                      .+-.++.+|..++..++   +.+|+.+|+++++++|+++.++..++.+|                               
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            35566677888877654   58999999999999999988877655544                               


Q ss_pred             -------------HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          534 -------------LELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       534 -------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                                   ...|++++|+..+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|..+..
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence                         236889999999999999986 57788889999999999999999999999999977643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.54  E-value=1e-06  Score=93.75  Aligned_cols=107  Identities=15%  Similarity=0.095  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK  555 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~  555 (605)
                      +....+.+..+..+|+|++|+..|++++++     .+++   ...+.++|.+|..+|+|++|+..+++++++     .|+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            344555667788899999999999999985     3444   678899999999999999999999999876     456


Q ss_pred             CH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 007401          556 NV---KAYLRRGTAREALFCYNEALQDFKHAMVL-----EPQNKAANL  595 (605)
Q Consensus       556 ~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~  595 (605)
                      ++   ..++++|.+|..+|+|++|+..|++++++     .|+++....
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  436 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD  436 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            65   48999999999999999999999999976     467765544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.53  E-value=4.7e-07  Score=97.94  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFK-------GKQWN-------KAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  550 (605)
                      |.....|+.+|..+.+       .|+++       +|+..|+++++ ..|++..+|..++..+...|++++|.+.|++++
T Consensus       269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al  348 (530)
T 2ooe_A          269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL  348 (530)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            4557899999999986       79987       99999999997 899999999999999999999999999999999


Q ss_pred             hcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          551 SLDKKNV-KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       551 ~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      +++|.++ .+|..++..+.+.|++++|.+.|+++++..|.+...+...+
T Consensus       349 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          349 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             CccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            9999986 69999999999999999999999999999887655544433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.51  E-value=1.1e-06  Score=72.39  Aligned_cols=80  Identities=15%  Similarity=-0.019  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLD-------KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      ++.-++.+|..+++.++|.+|+..|++|++..       .....++.++|.+++++|++++|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            46678899999999999999999999999863       34578999999999999999999999999999999999887


Q ss_pred             HHHHHHH
Q 007401          595 LAEKRLR  601 (605)
Q Consensus       595 ~~~~~~~  601 (605)
                      .....+.
T Consensus        84 ~n~~~~~   90 (104)
T 2v5f_A           84 GNLKYFE   90 (104)
T ss_dssp             HHHHHHH
T ss_pred             hhHHHHH
Confidence            7766443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.48  E-value=1.5e-06  Score=90.78  Aligned_cols=106  Identities=10%  Similarity=0.029  Sum_probs=87.1

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---H
Q 007401          495 KGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKNV---K  558 (605)
Q Consensus       495 ~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~  558 (605)
                      ........|+|++|+..|++++++     .|++   ...+.++|.+|..+|+|++|+..+++++++     .|+++   .
T Consensus       304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            344444578999999999999985     3454   567899999999999999999999999976     45565   4


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 007401          559 AYLRRGTAREALFCYNEALQDFKHAMVL-----EPQNKAANLAEKRL  600 (605)
Q Consensus       559 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~  600 (605)
                      .++++|.+|..+|+|++|+..|++++++     .|+++........+
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            8999999999999999999999999976     47777766655443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.43  E-value=8.4e-07  Score=71.45  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007401          485 SIDASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  556 (605)
                      .+++++.+..+|..++..++   .++|...++++++++|++..+++.+|..+++.|+|++|+..|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            35668899999999987666   7999999999999999999999999999999999999999999999999984

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.40  E-value=9.2e-07  Score=90.67  Aligned_cols=118  Identities=10%  Similarity=-0.063  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--V--  557 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~--  557 (605)
                      .....+..+|..++..|++++|+..+++++...|.+.     .++..+|.++...|++++|.+.+++++++.+..  .  
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   91 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   91 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3467788899999999999999999999999877552     367899999999999999999999999876533  2  


Q ss_pred             --HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhh
Q 007401          558 --KAYLRRGTAREALFCYNEALQDFKHAMVLEP--------QNKAANLAEKRLRKLI  604 (605)
Q Consensus       558 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~  604 (605)
                        .+++++|.++...|++++|+..+++++++.+        .....+..++.++...
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  148 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW  148 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence              3578899999999999999999999998752        2344556666665544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.37  E-value=6.7e-06  Score=87.88  Aligned_cols=143  Identities=13%  Similarity=-0.029  Sum_probs=111.5

Q ss_pred             ccCCchhHHhHHHHHHh------HHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Q 007401          448 YHGGDKFLLDTVLDLYD------SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK----GKQWNKAVNYYSEAIK  517 (605)
Q Consensus       448 ~~~~d~~ll~~a~~l~~------~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~  517 (605)
                      ..++......++..+..      ...++.....+...       ...+..++.+|..|..    .+++++|+++|+++++
T Consensus        35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-------QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            34455555555555433      23444444433321       1356788899999999    9999999999999987


Q ss_pred             hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCC
Q 007401          518 LNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       518 ~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~  589 (605)
                      .  .++.+++++|.+|..    .+++++|++.|+++.+.  +++.+++++|.+|..    .+++++|+++|+++.+.  +
T Consensus       108 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~  181 (490)
T 2xm6_A          108 K--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G  181 (490)
T ss_dssp             T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence            5  588999999999998    88999999999998876  579999999999988    88999999999999886  5


Q ss_pred             CHHHHHHHHHHHHh
Q 007401          590 NKAANLAEKRLRKL  603 (605)
Q Consensus       590 ~~~~~~~~~~~~~~  603 (605)
                      +..++..++.++..
T Consensus       182 ~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          182 NVWSCNQLGYMYSR  195 (490)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc
Confidence            78888888887754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.35  E-value=3.1e-06  Score=88.60  Aligned_cols=109  Identities=10%  Similarity=0.080  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK  555 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~  555 (605)
                      .+.....-..+.++|+|++|++.|+++++.     .|++   ...+.++|.+|..+|+|++|+..+++++++     .|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            455556666778899999999999999975     3444   567899999999999999999999999876     355


Q ss_pred             CHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 007401          556 NVK---AYLRRGTAREALFCYNEALQDFKHAMVL-----EPQNKAANLAE  597 (605)
Q Consensus       556 ~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~  597 (605)
                      ++.   .++++|.+|..+|++++|+..|++++++     .|+++.....+
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            654   8999999999999999999999999976     47776655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.35  E-value=2.7e-06  Score=90.05  Aligned_cols=107  Identities=10%  Similarity=-0.018  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          491 LLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       491 ~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .++.+|..+.+.|   ++++|+++|+++++..+.++..++++|.+|...    +++++|+++|+++.   |+++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            5666677777777   677777777777777666666666677666544    56667777776665   6666666666


Q ss_pred             HHH-H--HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          564 GTA-R--EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       564 a~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      |.+ +  ...+++++|+++|+++.+.  ++..++..++.++.
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            666 3  3566666666666666643  35666666666554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.33  E-value=1e-05  Score=86.48  Aligned_cols=111  Identities=14%  Similarity=0.048  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHH
Q 007401          487 DASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVK  558 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~  558 (605)
                      .....++.+|..+..    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|++.|+++++.  +++.
T Consensus       109 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~  184 (490)
T 2xm6_A          109 GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW  184 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            356788999999999    89999999999999875  689999999999998    88999999999999987  5899


Q ss_pred             HHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          559 AYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       559 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +++++|.+|..    .+++++|+++|+++.+.  ++..++..++.++..
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~  231 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYF  231 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            99999999999    99999999999999985  578888888887753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.33  E-value=6.2e-06  Score=69.27  Aligned_cols=102  Identities=15%  Similarity=0.054  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHH
Q 007401          502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ---AEEDCSKTISLD-K-KNVKAYLRRGTAREALFCYNEA  576 (605)
Q Consensus       502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A  576 (605)
                      ......+.+.|++.+..++.+....+++|+++....+...   ++..++..++.+ | ..-+.+|++|..++++|+|++|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3455667778888888888999999999999998876555   999999988877 5 5668999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          577 LQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       577 ~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ..+++..|+++|+|.++......+..+
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999998887777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.32  E-value=1.2e-06  Score=93.20  Aligned_cols=109  Identities=8%  Similarity=0.020  Sum_probs=93.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  552 (605)
                      -+..+..+..+.++|..|..+|+|++|+.+|++++.+     .+++   +..++++|.+|..+|+|++|+..|++|+++ 
T Consensus       344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999975     3444   667899999999999999999999999976 


Q ss_pred             ----CCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          553 ----DKKNVK---AYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       553 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                          .|+++.   ...+++.++..++.|++|...|+++.+..-+|
T Consensus       424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                466654   66789999999999999999999987654333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.29  E-value=4.8e-06  Score=72.45  Aligned_cols=93  Identities=20%  Similarity=0.070  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 007401          503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQ  578 (605)
Q Consensus       503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  578 (605)
                      +++++|+++|+++.+.....+.    +|.+|.....+++|+++|+++.+.  .++.+++++|.+|..    .+++++|++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            4789999999999998755444    999999999999999999999987  689999999999999    999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          579 DFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       579 ~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +|+++.+.  +++.+...++.++..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99999986  689999999888764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.24  E-value=3.3e-06  Score=73.68  Aligned_cols=81  Identities=12%  Similarity=0.037  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          487 DASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ...+..+++|+++.+.+   +.++++..++++++.+ | ++.+++|++|..|+++++|++|.++++++++++|+|.++..
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            34788999999999988   7779999999999998 7 56899999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 007401          562 RRGTAR  567 (605)
Q Consensus       562 ~la~~~  567 (605)
                      .+-.+-
T Consensus       110 Lk~~ie  115 (152)
T 1pc2_A          110 LERLID  115 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.24  E-value=3.7e-06  Score=88.96  Aligned_cols=109  Identities=14%  Similarity=0.037  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHH-H--HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCH
Q 007401          486 IDASELLKEKGNA-A--FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----CFQQAEEDCSKTISLDKKNV  557 (605)
Q Consensus       486 ~~~a~~~~~~g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~p~~~  557 (605)
                      +.....++++|.. +  ...+++++|+.+|+++++.  .++.+++++|.+|. .|     ++++|+++|+++.   +.++
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~  318 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV  318 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence            3445556666666 3  3466677777777766643  36666667776665 33     6677777776666   6666


Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          558 KAYLRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       558 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .+++++|.+|..    ..++++|..+|+++.+  .++..+...++.++.
T Consensus       319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence            677777766655    3366777777776655  345555666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.12  E-value=6.8e-06  Score=79.30  Aligned_cols=85  Identities=13%  Similarity=0.095  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-ccCHHH
Q 007401          505 WNKAVNYYSEAIKLNGT--SATYYSNRAAAYLEL-----GCFQQAEEDCSKTISLDKKN-VKAYLRRGTAREA-LFCYNE  575 (605)
Q Consensus       505 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~  575 (605)
                      ..+|...++++++++|+  +..+|..+|..|.+.     |+.++|.++|++|++++|+. ...++.+|..+.. .|++++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            57899999999999999  677999999999995     99999999999999999975 9999999999988 599999


Q ss_pred             HHHHHHHHHHhCCC
Q 007401          576 ALQDFKHAMVLEPQ  589 (605)
Q Consensus       576 A~~~~~~al~~~p~  589 (605)
                      |...++++++.+|.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999998776

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.08  E-value=2.6e-05  Score=76.99  Aligned_cols=97  Identities=9%  Similarity=-0.068  Sum_probs=55.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHH
Q 007401          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK------NVKAYLRRG  564 (605)
Q Consensus       493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la  564 (605)
                      ..+|.++...|++++|++.+.+.+..+|  ++.+++..++++++++|+.+.|.+.+++..+.+|+      .....+.-+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            4556666666666666666666666554  55666666666666666666666666666666552      122222223


Q ss_pred             HHHHHcc--CHHHHHHHHHHHHHhCCC
Q 007401          565 TAREALF--CYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       565 ~~~~~~g--~~~~A~~~~~~al~~~p~  589 (605)
                      ++....|  ++++|...|+++.+..|+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            3344444  566666666666555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.05  E-value=5e-05  Score=74.92  Aligned_cols=143  Identities=9%  Similarity=-0.066  Sum_probs=102.9

Q ss_pred             HhHHHHHHhHHHHHHhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHH--
Q 007401          456 LDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNR--  529 (605)
Q Consensus       456 l~~a~~l~~~~~e~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--  529 (605)
                      +..+........++..........  .+ .....+.+...+.++.++|+.+.|.+.+++..+.+|+    +-.....+  
T Consensus       106 la~i~~~~g~~eeAL~~l~~~i~~--~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          106 LATAQAILGDLDKSLETCVEGIDN--DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTS--SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhcc--CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            333344444455555555433111  11 1367888999999999999999999999999999883    22334444  


Q ss_pred             HHHHHHcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCCHHHHH
Q 007401          530 AAAYLELG--CFQQAEEDCSKTISLDKK--NVKAYLRRGTAREALFCYNEALQDFKHAMVL----------EPQNKAANL  595 (605)
Q Consensus       530 a~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~  595 (605)
                      +++.+..|  ++++|...|+++....|+  ....+++   ++.++|++++|.+.++++++.          +|+|+.++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            55566666  899999999999888886  3445555   899999999999999988876          488999887


Q ss_pred             HHHHHHHhh
Q 007401          596 AEKRLRKLI  604 (605)
Q Consensus       596 ~~~~~~~~~  604 (605)
                      ++..+...+
T Consensus       260 N~i~l~~~l  268 (310)
T 3mv2_B          260 NQITLALMQ  268 (310)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            775555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.96  E-value=3.2e-05  Score=67.79  Aligned_cols=113  Identities=9%  Similarity=0.020  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD---KKN  556 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~  556 (605)
                      ...++.....++..+.|+.|+-.++.++.+..++         ..+++.+|+.++..++|.+|...|++|+++.   +++
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3457778888999999999999999987764333         3488999999999999999999999987652   111


Q ss_pred             ----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          557 ----------------------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       557 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                                            .+..|.++.||.+++++++|+..++..-. .-..+.....+++++.
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLYK  166 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHCC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHhc
Confidence                                  26889999999999999999999875322 2345777777776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.96  E-value=0.00012  Score=84.86  Aligned_cols=92  Identities=12%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-----------  555 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----------  555 (605)
                      +....|+++|..+.+.|++++|++.|.++     +++..|...+.++.++|+|++|+++|..|.+.+++           
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            45788999999999999999999999886     88999999999999999999999999888766533           


Q ss_pred             ----------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401          556 ----------------NVKAYLRRGTAREALFCYNEALQDFKHA  583 (605)
Q Consensus       556 ----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  583 (605)
                                      +...++++|..++..|+|++|..+|+++
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                            1234556777777777777777777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.91  E-value=5.5e-05  Score=87.49  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---------------  554 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------  554 (605)
                      ..|...|+.++..|+|++|+.+|+++        ..|..++.+|.++|+|++|++.+++|...++               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            45668999999999999999999996        5889999999999999999999999854443               


Q ss_pred             ----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          555 ----------KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       555 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                                .+++.+..++..|...|.|++|+..+++++.+++.+...+..++.++.+
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence                      2445566778889999999999999999999999988888777776654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.82  E-value=0.00014  Score=75.06  Aligned_cols=105  Identities=12%  Similarity=0.011  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      ..|..+|.++.+.|+|++|++.|+++     +++..|.....++...|+++.|..+..+ +..   +++-...+..+|.+
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek  219 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQD  219 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHH
Confidence            46889999999999999999999999     4789999999999999999999877765 334   44445568889999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      .|++++|+..+++++.+++.+...+..++.++.+
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988888877654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.80  E-value=0.00053  Score=58.41  Aligned_cols=84  Identities=10%  Similarity=-0.082  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 007401          520 GTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL  595 (605)
Q Consensus       520 p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  595 (605)
                      .-+....+++|+++....+   ..+++..++..++.+|. .-+.+|++|..++++|+|++|..+.+..|+++|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4568889999999988775   56789999999988884 5578999999999999999999999999999999998888


Q ss_pred             HHHHHHHh
Q 007401          596 AEKRLRKL  603 (605)
Q Consensus       596 ~~~~~~~~  603 (605)
                      ....+..+
T Consensus       116 Lk~~Ie~~  123 (144)
T 1y8m_A          116 LKSMVEDK  123 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.74  E-value=0.00031  Score=59.07  Aligned_cols=83  Identities=10%  Similarity=-0.079  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 007401          521 TSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKK-NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLA  596 (605)
Q Consensus       521 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  596 (605)
                      -.+...+++|+++.+..+   ..+++..++..++.+|. ..+.+|.+|..++++|+|++|..+.+.+|+++|+|.++...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            356778888888877664   45678888888877774 45688888888888888888888888888888888887777


Q ss_pred             HHHHHHh
Q 007401          597 EKRLRKL  603 (605)
Q Consensus       597 ~~~~~~~  603 (605)
                      ...+..+
T Consensus       118 k~~Ie~k  124 (134)
T 3o48_A          118 KSMVEDK  124 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0001  Score=76.76  Aligned_cols=100  Identities=7%  Similarity=-0.044  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISL------DKKNV  557 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~  557 (605)
                      .....++..+...|++++|+.+|++++...+      ....++.++|.+|...|+|.+|+..+++++..      .+...
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  175 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV  175 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence            3445566666667777777777777766432      22667888899999999999999988888765      22335


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  589 (605)
                      .++..++.+|..+|++++|...+++++.+.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            68888899999999999999999999888643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.65  E-value=5.9e-05  Score=78.61  Aligned_cols=96  Identities=10%  Similarity=0.010  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK------KNV  557 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~  557 (605)
                      ..+.++|..|...|+|++|+++|++++...+..      ..++..++.++...+++++|++.+++++...+      ...
T Consensus        56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  135 (434)
T 4b4t_Q           56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH  135 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            344444555555555555555555544433221      12233344444444445555555544443311      113


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401          558 KAYLRRGTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       558 ~~~~~la~~~~~~g~~~~A~~~~~~al~  585 (605)
                      ..+.++|.+|...|+|++|+..+++++.
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q          136 SLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            3444455555555555555555544443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.57  E-value=0.00025  Score=74.01  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  552 (605)
                      -+.++..+..+.++|..|..+|+|++|+.+|++++.+     .|++   ...++++|.+|..+|+|++|+..|++|+++ 
T Consensus       322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999975     2444   667899999999999999999999999876 


Q ss_pred             ----CCCCHH---HHHHHHHHHHHc
Q 007401          553 ----DKKNVK---AYLRRGTAREAL  570 (605)
Q Consensus       553 ----~p~~~~---~~~~la~~~~~~  570 (605)
                          .|+++.   .+.+++.+...+
T Consensus       402 ~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          402 RVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCChHHHHHHHHHHHHHHHH
Confidence                467664   445566665443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.56  E-value=0.00012  Score=75.74  Aligned_cols=98  Identities=14%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      ..|..+|+.++..|+|++|+.+|.++        ..|..+|.|+.++|+|++|++.++++     +++..|.....++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            48999999999999999999999987        47899999999999999999999999     589999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          570 LFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       570 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .|+++.|..+... +..+|++   ...+..++.+.
T Consensus       190 ~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~  220 (449)
T 1b89_A          190 GKEFRLAQMCGLH-IVVHADE---LEELINYYQDR  220 (449)
T ss_dssp             TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHC
Confidence            9999999877664 3344433   33344444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.54  E-value=0.00016  Score=75.47  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 007401          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (605)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-  552 (605)
                      -++.+..+..+.++|..|..+|+|++|+.+|++++++     .|+   -+..++++|.+|..+|+|++|+..|++|+++ 
T Consensus       333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999975     344   4667999999999999999999999999886 


Q ss_pred             ----CCCCHHHH
Q 007401          553 ----DKKNVKAY  560 (605)
Q Consensus       553 ----~p~~~~~~  560 (605)
                          .|+++..-
T Consensus       413 ~~~lG~~Hp~~~  424 (433)
T 3qww_A          413 EVAHGKDHPYIS  424 (433)
T ss_dssp             HHHTCTTCHHHH
T ss_pred             HHHcCCCChHHH
Confidence                46776543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.47  E-value=0.00047  Score=57.80  Aligned_cols=80  Identities=10%  Similarity=0.020  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNK---AVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR  562 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  562 (605)
                      ..+..+++|+.+.+..+..+   ++..++..+..+ | ..-++++.+|..++++++|.+|.++++..++.+|+|.++...
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            36788999999999888777   999999998876 4 567899999999999999999999999999999999998776


Q ss_pred             HHHHH
Q 007401          563 RGTAR  567 (605)
Q Consensus       563 la~~~  567 (605)
                      ...+-
T Consensus       114 k~~i~  118 (126)
T 1nzn_A          114 ERLID  118 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.33  E-value=0.0008  Score=67.65  Aligned_cols=72  Identities=15%  Similarity=0.084  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVK  558 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  558 (605)
                      +..+..+..++..++..|++++|+..+++++.++| +...|..+|.++...|++++|++.|++|+.++|....
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            45677888889888889999999999999999996 4788899999999999999999999999999997764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.30  E-value=0.003  Score=54.13  Aligned_cols=112  Identities=13%  Similarity=-0.118  Sum_probs=94.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQW------NKAVNYYSEAIKLNGT--------SATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al  550 (605)
                      .+++.+.|+.....+.+.|+.      ++-.+.|++++..-|-        +...|...|.. ...++.++|.+.|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            356678888888888888998      8889999999987654        25567777755 56689999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 007401          551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAE  597 (605)
Q Consensus       551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  597 (605)
                      +++..+++.|...|.--.++|+..+|.+.+.+++.+.|.........
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a  134 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA  134 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999887655443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.24  E-value=0.001  Score=64.26  Aligned_cols=70  Identities=10%  Similarity=0.039  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 007401          487 DASELLKEKGNAAFKG-----KQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKN  556 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~  556 (605)
                      .....|..+|..|.+.     |+.++|.++|+++++++|+. ...++.+|..+.. .++++++.+.++++++.+|+.
T Consensus       197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            3677999999999995     99999999999999999975 9999999999988 599999999999999998863

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.20  E-value=0.0039  Score=53.05  Aligned_cols=80  Identities=9%  Similarity=0.035  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      ..+..+++++++.+..+-   .+++..++..+...|. .-+.++.+|..++++++|.+|.++++..++.+|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            477889999999998765   5799999999998884 578999999999999999999999999999999999887765


Q ss_pred             HHHH
Q 007401          564 GTAR  567 (605)
Q Consensus       564 a~~~  567 (605)
                      ..+-
T Consensus       118 ~~Ie  121 (144)
T 1y8m_A          118 SMVE  121 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.18  E-value=0.0038  Score=52.43  Aligned_cols=81  Identities=9%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+..+++|+.+.+..+.   .+++..++..++.+|. .-+.++.+|..++++|+|.+|.++++.+++.+|+|.++.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            67889999999987754   5799999999998884 5889999999999999999999999999999999998877666


Q ss_pred             HHHHH
Q 007401          565 TAREA  569 (605)
Q Consensus       565 ~~~~~  569 (605)
                      .+-.+
T Consensus       120 ~Ie~k  124 (134)
T 3o48_A          120 MVEDK  124 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.08  E-value=0.0028  Score=69.96  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCC
Q 007401          488 ASELLKEKGNAAFKGKQWNKAV-NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL-----------DKK  555 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----------~p~  555 (605)
                      ..+.|+..+..+...|+.++|. ..|++++...|.+..+|..++......+++++|.+.|++++..           .|.
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            3556666666666666666665 6666666666666666666666666666666666666666653           132


Q ss_pred             -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          556 -----------NVKAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       556 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                                 +..+|..++....+.|+.+.|.+.|.+|++.
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                       2335555555555556666666666666554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.84  E-value=0.0053  Score=67.70  Aligned_cols=116  Identities=6%  Similarity=-0.133  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      ....|...+....+.++.+.|...|.+|++. .+....+|...+....+.+ +++.|.+.|+++++..|+++..|...+.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3557888888888889999999999999987 4455677777777766654 4899999999999999999999888888


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQ---NKAANLAEKRLRKL  603 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~  603 (605)
                      .....|+.+.|...|++++...|+   ....+.........
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            888889999999999999998873   34455544444433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.68  E-value=0.0073  Score=52.92  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-------------------------TSATYYSNRAAAYLELGCFQ  540 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~~~~~  540 (605)
                      ...++.+..+|+.+|.+++|.+|+..|+++++...                         .+.++.+.++.||.+++++.
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            35688999999999999999999999999986421                         11278899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          541 QAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       541 ~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      +|+..++. |-.....++....+|..|
T Consensus       140 ~Ai~~Le~-Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDG-IPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence            99988754 333446788888888776

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.36  E-value=0.046  Score=58.00  Aligned_cols=111  Identities=8%  Similarity=-0.059  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------------------------
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-----------------------------------  532 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-----------------------------------  532 (605)
                      ....|+..+..+.+.|+.++|...|++++.. |.+...+...+..                                   
T Consensus       212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~  290 (493)
T 2uy1_A          212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI  290 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence            3788999999999999999999999999999 9886555444332                                   


Q ss_pred             -----HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 007401          533 -----YLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF-CYNEALQDFKHAMVLEPQNKAANLAEKRL  600 (605)
Q Consensus       533 -----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~  600 (605)
                           ....++.+.|.+.|.+| +..+.....|...|..-...+ +.+.|...|+++++..|+++..+......
T Consensus       291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence                 22355678899999999 444445677777777766666 69999999999999999887665544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.33  E-value=0.056  Score=55.33  Aligned_cols=62  Identities=11%  Similarity=-0.046  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMV  585 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  585 (605)
                      .+...++..+...|++.+++..+++++..+|-+-.+|..+-.+|...|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556788888999999999999999999999999999999999999999999999988755

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.81  E-value=0.1  Score=49.60  Aligned_cols=61  Identities=25%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 007401          497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV  557 (605)
Q Consensus       497 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  557 (605)
                      ..+++.|+.++|++.....++.+|.|+.....+-+.+.-.|++++|.+.++.+.+++|+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            4678899999999999999999999999999999999999999999999999999999764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.042  Score=60.69  Aligned_cols=61  Identities=11%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHA  583 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  583 (605)
                      ...+...+..++.+++|+-|+++.++|+.+-|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3466667888889999999999999999999999999999999999999999999887765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.95  E-value=0.26  Score=52.17  Aligned_cols=95  Identities=11%  Similarity=-0.136  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      ....|...+....+.++.+.|...|+++ ...+.....|...|...+..+ +.+.|.+.|+++++..|+++..|...+..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3467888888888888899999999999 433346677777777766655 69999999999999999999888888888


Q ss_pred             HHHccCHHHHHHHHHHH
Q 007401          567 REALFCYNEALQDFKHA  583 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~a  583 (605)
                      ....|+.+.|...|+++
T Consensus       364 e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          364 LLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHTCHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            88899999998888876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.69  E-value=0.44  Score=50.46  Aligned_cols=98  Identities=7%  Similarity=-0.022  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK-KNVKAYLRRGTA  566 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~  566 (605)
                      ...|..+-..+.+.|++++|++.|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..- -+...|..+-.+
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            5678888899999999999999999988753 22578888899999999999999999999887642 267899999999


Q ss_pred             HHHccCHHHHHHHHHHHHHh
Q 007401          567 REALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~  586 (605)
                      +.+.|+.++|.+.|++..+.
T Consensus       185 ~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HhhCCCHHHHHHHHHHHHHh
Confidence            99999999999999998765

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.69  E-value=0.14  Score=53.81  Aligned_cols=82  Identities=18%  Similarity=0.075  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      -..+..+|+.......+..|..+|.+|+.+.|++...|+.+|.++...+++-+|+-+|.+++.....++.+..++...+.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999887779999999988876


Q ss_pred             Hc
Q 007401          569 AL  570 (605)
Q Consensus       569 ~~  570 (605)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.60  E-value=0.41  Score=41.06  Aligned_cols=87  Identities=11%  Similarity=-0.032  Sum_probs=72.3

Q ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      .....+..|...+.. ...++.++|-+.|+.+++++..++.+|...|+.-...|+..+|.+.+.+|+-+.|...+. +..
T Consensus        56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~  133 (161)
T 4h7y_A           56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEI  133 (161)
T ss_dssp             TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHH
T ss_pred             cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHH
Confidence            455678888888865 566999999999999999988899999999999999999999999999999999975543 344


Q ss_pred             HHHHHHccC
Q 007401          564 GTAREALFC  572 (605)
Q Consensus       564 a~~~~~~g~  572 (605)
                      +..-.+.|.
T Consensus       134 a~~nl~~~~  142 (161)
T 4h7y_A          134 ALRNLNLQK  142 (161)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHhhhcCC
Confidence            555555554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.47  E-value=0.2  Score=52.67  Aligned_cols=79  Identities=10%  Similarity=-0.073  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ..+..+|++......+..|..+|.+|..+.|++...|+.+|.+....|+.-+|+.+|.+++....-.+.+..++..+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3677888888888888999999999999999999999999999988999989999988888877667777777766554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.12  Score=57.01  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      ....+..++..+..+|+|+-|+++-++++...|++...|+.|+.||..+++|+.|+-.++-+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34578889999999999999999999999999999999999999999999999999777665

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.82  E-value=0.93  Score=39.49  Aligned_cols=100  Identities=7%  Similarity=-0.014  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcC--------------
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI--SLD--------------  553 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~--------------  553 (605)
                      +.-..++..++-.|.|..++-.+.     .-+.....+....||.++.+|.+|+.+++..+  +.+              
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            344567888999999999887543     33567888889999999999999999999998  332              


Q ss_pred             -CCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          554 -KKNVK-AYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       554 -p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                       |.+-+ .+..+|..+.+.|+.++|+..|......+|-...+.
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence             34444 556689999999999999999999998887554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.11  E-value=0.96  Score=45.93  Aligned_cols=95  Identities=11%  Similarity=-0.002  Sum_probs=75.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----HHH
Q 007401          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD---KKN----VKA  559 (605)
Q Consensus       493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~  559 (605)
                      ..+|..|+..|+|.+|++.+.+..+--..      -.+++..-...|..++++.++...|.+|....   +.+    +..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            47899999999999999999998874221      24667778888999999999999999986553   122    346


Q ss_pred             HHHHHHHHH-HccCHHHHHHHHHHHHHhC
Q 007401          560 YLRRGTARE-ALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       560 ~~~la~~~~-~~g~~~~A~~~~~~al~~~  587 (605)
                      ...-|..+. ..++|++|..+|-++++-.
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            667888888 8999999999999987543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.93  E-value=0.49  Score=48.94  Aligned_cols=99  Identities=9%  Similarity=-0.090  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCH----HHH
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKNV----KAY  560 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~----~~~  560 (605)
                      ..+..+|..+++.|++++|.+.|.++.....   +-.+.+.....++...+++..+...+.++-.+.  ..++    ...
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            4567889999999999999999999987543   347888899999999999999999999986652  1222    355


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      .+.|..+...++|.+|...|..++.-..
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            5678888899999999999988876654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.60  E-value=1.7  Score=45.08  Aligned_cols=102  Identities=13%  Similarity=0.049  Sum_probs=80.3

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK-LNG-T----SATYYSNRAAAYLELGCFQQAEEDCSKTIS---LDKK  555 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p-~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~  555 (605)
                      ..+.+.....++..+...|+|.+|...+..... ... .    -.+.+......|+..++|.+|...++++-.   -.+.
T Consensus       133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~  212 (445)
T 4b4t_P          133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK  212 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence            345677888899999999999999999998753 211 1    156778888999999999999999988632   2333


Q ss_pred             CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 007401          556 NV----KAYLRRGTAREALFCYNEALQDFKHAMVL  586 (605)
Q Consensus       556 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~  586 (605)
                      ++    ..+...|..+...++|.+|..+|..++..
T Consensus       213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            33    36777899999999999999999998864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.45  E-value=0.55  Score=44.55  Aligned_cols=63  Identities=17%  Similarity=0.010  Sum_probs=57.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          532 AYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       532 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      .+++.++.++|++.+...++.+|.|......+-..+.-.|+++.|.+.++.+.+++|+.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            455778999999999999999999999999999999999999999999999999999886543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.01  E-value=1.9  Score=45.45  Aligned_cols=100  Identities=9%  Similarity=-0.022  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHH
Q 007401          503 KQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-KKNVKAYLRRGTAREALFCYNEALQDF  580 (605)
Q Consensus       503 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~  580 (605)
                      ++.++|.+.|++.....- -+...|..+-..|.+.|++++|.+.+++..+.. .-+...|..+-..|.+.|+.++|.+.|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            346888999998876532 257889999999999999999999999988753 226889999999999999999999999


Q ss_pred             HHHHHhCC-CCHHHHHHHHHHHH
Q 007401          581 KHAMVLEP-QNKAANLAEKRLRK  602 (605)
Q Consensus       581 ~~al~~~p-~~~~~~~~~~~~~~  602 (605)
                      ++..+..- -|...+..+-..+.
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHh
Confidence            99887531 13444444444433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.83  E-value=6.1  Score=34.47  Aligned_cols=101  Identities=9%  Similarity=-0.035  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK--L---------------NGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTI  550 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al  550 (605)
                      +-..+-...++.+.++|..|+..+++.+.  .               +|.+.+ .+..+|..+.+.++-++|+.++....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            44555568899999999999999999993  2               344444 45678999999999999999998877


Q ss_pred             hcCCCC------------------------------------------------------------HHHHHHHHHHHHHc
Q 007401          551 SLDKKN------------------------------------------------------------VKAYLRRGTAREAL  570 (605)
Q Consensus       551 ~~~p~~------------------------------------------------------------~~~~~~la~~~~~~  570 (605)
                      ..+|-.                                                            ....-+.+..|+.+
T Consensus       142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l  221 (242)
T 3kae_A          142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL  221 (242)
T ss_dssp             HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred             CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence            765411                                                            11222356677888


Q ss_pred             cCHHHHHHHHHHHHHhCCC
Q 007401          571 FCYNEALQDFKHAMVLEPQ  589 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~  589 (605)
                      |-.++...+|...-+.+|.
T Consensus       222 g~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          222 GMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             TCHHHHHHHHHHHHHHSTT
T ss_pred             ccchhHHHHHHHHHhcCCC
Confidence            8888888888888888875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.42  E-value=0.92  Score=46.19  Aligned_cols=62  Identities=8%  Similarity=-0.037  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (605)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  551 (605)
                      .....++..+...|++.+|+..+++++..+|-+..++..+..+|+..|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556678889999999999999999999999999999999999999999999999988654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.96  E-value=0.41  Score=50.07  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHH----------HHHHHHHh-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVN----------YYSEAIKL-----NG-TSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~----------~~~~al~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  551 (605)
                      .+..|+-....+...|+..+...          .+-.++..     +. ..+..++.+-..|+..+.|++|....+++.-
T Consensus       180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f  259 (523)
T 4b4t_S          180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY  259 (523)
T ss_dssp             -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC
Confidence            35566666666666666554321          22222221     22 1367788889999999999999999999853


Q ss_pred             cCC--CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 007401          552 LDK--KN---VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       552 ~~p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  591 (605)
                      -..  .|   ...+|++|.++..+++|.+|.+++..|++..|.+.
T Consensus       260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            221  12   44788899999999999999999999999887653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.87  E-value=3.5  Score=36.52  Aligned_cols=44  Identities=11%  Similarity=0.031  Sum_probs=22.9

Q ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007401          500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK  548 (605)
Q Consensus       500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  548 (605)
                      .+.|+++.|.+..++.     ++...|..+|...+..++++-|..+|++
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            4455555555544432     3445555555555555555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.81  E-value=1.9  Score=48.08  Aligned_cols=45  Identities=18%  Similarity=0.130  Sum_probs=31.7

Q ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       500 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      ...|++++|.+..+     .-++...|..+|..+.+.++++.|+++|.++
T Consensus       663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            44555555555432     2356788888888888888888888888775

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.40  E-value=8.7  Score=43.67  Aligned_cols=100  Identities=7%  Similarity=-0.095  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKNVKAY  560 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~  560 (605)
                      ..-..|..+=+.+.+.|+.++|.+.|++.-+.    ..-+...|+.+-..|.+.|++++|.+.|++..+..  | |...|
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY  203 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence            45567888999999999999999999775432    23467889999999999999999999999988753  5 78899


Q ss_pred             HHHHHHHHHccC-HHHHHHHHHHHHHhC
Q 007401          561 LRRGTAREALFC-YNEALQDFKHAMVLE  587 (605)
Q Consensus       561 ~~la~~~~~~g~-~~~A~~~~~~al~~~  587 (605)
                      ..+-.++.+.|+ .++|.+.|++..+..
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            999999999998 478889999887764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.56  E-value=7.8  Score=34.22  Aligned_cols=80  Identities=11%  Similarity=-0.077  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...|..+|...+.+|+++-|.++|+++-..        ..+-..|...|+.++-.+..+.+...+..+.     .-.+++
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~-----af~~~l  100 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKMQNIAQTREDFGS-----MLLNTF  100 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH-----HHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHHHHHHHHCccHHH-----HHHHHH
Confidence            568999999999999999999999986432        2333344445555544444444433322111     122344


Q ss_pred             HccCHHHHHHHHH
Q 007401          569 ALFCYNEALQDFK  581 (605)
Q Consensus       569 ~~g~~~~A~~~~~  581 (605)
                      .+|+++++++.|.
T Consensus       101 ~lGdv~~~i~lL~  113 (177)
T 3mkq_B          101 YNNSTKERSSIFA  113 (177)
T ss_dssp             HHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            4555555554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.40  E-value=5.3  Score=44.39  Aligned_cols=83  Identities=13%  Similarity=0.029  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ...|.++|..+.+.++++.|+++|.++-..        ...+.+.+..++......+++..|...|.+.     ++.   
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~---  752 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI---  752 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH---
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH---
Confidence            568999999999999999999999986221        2344555556666666666666655554331     111   


Q ss_pred             HHHHHHHHHccCHHHHHHH
Q 007401          561 LRRGTAREALFCYNEALQD  579 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~  579 (605)
                      ...-.+|.+.+++++|...
T Consensus       753 ~~a~~~~~~~~~~~~A~~l  771 (814)
T 3mkq_A          753 QGAKDLLIKSQRFSEAAFL  771 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHH
Confidence            1123345566666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	605
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	1e-49
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	8e-49
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	4e-29
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	5e-24
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	2e-21
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-20
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-17
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-16
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	8e-16
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-14
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	5e-14
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-13
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	8e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	6e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-08
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	8e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-04

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  177 bits (449), Expect = 1e-49
 Identities = 105/479 (21%), Positives = 186/479 (38%), Gaps = 58/479 (12%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQ---PLAGLKFAIKDVF 84
           +   +L    R +P +       AF+   E           + +      G+  AIKD  
Sbjct: 25  LPQLSLETIKRLDPHVK------AFISVRE---------NVSVEKKGKFWGIPVAIKDNI 69

Query: 85  DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
              G  T   S   +  ++E+   A VV  + + G   +GK  LDEFA G + E   +  
Sbjct: 70  LTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFP 127

Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
             NP     +PGGSS GSA AV+A +V  ALG+DT G VR PAS CG++GY+P++G VS 
Sbjct: 128 TRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSR 187

Query: 205 IGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLK 264
            G++  + SLD +G + +       +  ++   +  +     R +      +        
Sbjct: 188 YGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKF 247

Query: 265 TIH--------------VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA--QSTSP 308
            +                  +A++ L            +     +P +K   A     +P
Sbjct: 248 AVPEEIYEHDIEEGVSERFEEALKLLER-------LGAKVERVKIPHIKYSVATYYVIAP 300

Query: 309 ENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDN 363
              ++ L     V   L R + K + E ++K+     G  V  R++    T      +  
Sbjct: 301 AEASSNLARFDGVKYGL-RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAY 359

Query: 364 IKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSM 423
                KVR ++   L  +L     ++ PT      K+   K     +     + +   ++
Sbjct: 360 FNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYY--LMDIFTIPANL 417

Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-LVPLPD 481
           +G   +++P G  N  P+ +  I     D      V  +  ++++      N + PLP+
Sbjct: 418 AGLPAISVPFGFSNNLPVGVQVIGRRFAD----GKVFRIARAIEKNSPYNENGMFPLPE 472

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  174 bits (443), Expect = 8e-49
 Identities = 102/454 (22%), Positives = 175/454 (38%), Gaps = 37/454 (8%)

Query: 30  VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
           V+ +        +P +     +D    +++ + +             L G+   IKD   
Sbjct: 25  VVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD-ELQAKDQMDGKLFGIPMGIKDNII 83

Query: 86  VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTP 145
             G  T   S   +      E T +      K  A  IGK  +DEFA G + E  ++   
Sbjct: 84  TNGLETTCASKMLEGFVPIYESTVMEKLH--KENAVLIGKLNMDEFAMGGSTETSYFKKT 141

Query: 146 VNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI 205
           VNP     +PGGSS GSA AVAA LV  +LG+DT G +R PA++CG++G +P++G VS  
Sbjct: 142 VNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRF 201

Query: 206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKT 265
           G++  + SLD +G L RN      V   +   +  +   A      D   ++ K  K   
Sbjct: 202 GLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD-VDFTSEIGKDIKGLK 260

Query: 266 IHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQ-----------------STSP 308
           + +                 +V + + + V +LK L A                    + 
Sbjct: 261 VALPK------EYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIAS 314

Query: 309 ENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNI---- 364
              ++ L     +       E  ++ E +  S     G  V  R+               
Sbjct: 315 SEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAY 374

Query: 365 -KILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSM 423
            K   KVR  ++    ++ ++  ++V PT       L  +       +   L L++  ++
Sbjct: 375 YKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDL-LTTPVNL 433

Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
           +G   +++P G+ N  PI + FI     +K L  
Sbjct: 434 AGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYR 467

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score =  119 bits (297), Expect = 4e-29
 Identities = 104/458 (22%), Positives = 167/458 (36%), Gaps = 42/458 (9%)

Query: 30  VLAETLRR-----RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKD 82
           +    L+R     R  P+L     ++  A  E  E     +      R PL G+   +KD
Sbjct: 26  LTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDR--ERRDGRLRGPLHGIPLLLKD 83

Query: 83  VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITG 137
             +     T  GS             A +V  L   GA  +GKT L E+A       I+G
Sbjct: 84  NINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISG 140

Query: 138 ENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRP 197
            +   G   NP   SH P GSSSGSAVAVAA L   A+GT+T G +  PA+  G++G +P
Sbjct: 141 WSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKP 200

Query: 198 SHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQL 257
           + G VS  G++P S S DT G +AR+ +    V   +   +  +P  A     A   +  
Sbjct: 201 TVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTA 260

Query: 258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG------ 311
              P+      I      L  Y+    +               +  +  +          
Sbjct: 261 RLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERT 320

Query: 312 --TATLKALSSVMLSLQRYEFKT---IYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKI 366
                 KA      +  R   ++   +       +K  LG    E ++EA  T       
Sbjct: 321 LLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPA 380

Query: 367 LYKVRNEMRAALQRLLKDDK-------ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSS 419
             + R++ R        D          LV PT        +    +  E         S
Sbjct: 381 YIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGES-------YS 433

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
             +++G   + +P+G+ +  P+ + F+     +  L++
Sbjct: 434 AAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score =  102 bits (254), Expect = 5e-24
 Identities = 90/431 (20%), Positives = 146/431 (33%), Gaps = 51/431 (11%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVK 87
            +A++      R  +++      AF+   +           A  PL G+   IKD+ D  
Sbjct: 21  AIAQSHAAIEAREKEVH------AFVRHDKSAR------AQASGPLRGIAVGIKDIIDTA 68

Query: 88  GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVN 147
              T  GS  ++    +    A VV +L + GAT IGKT    FA             +N
Sbjct: 69  NMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLN 120

Query: 148 PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV 207
           P    H PGGSSSGSA AV A ++  ALGT T G V  PA++CG    +PS   +  +GV
Sbjct: 121 PHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGV 180

Query: 208 LPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIH 267
              S +LDTVGL    A  L R    +                  +   +      +   
Sbjct: 181 KCYSWALDTVGLFGARAEDLARGLLAMTG--------------RSEFSGIVPAKAPRIGV 226

Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327
           V  +   ++            +       S++ +       E                  
Sbjct: 227 VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA 286

Query: 328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKI 387
           +EF   ++E            +   +   +  T        ++    R  L  + +   +
Sbjct: 287 WEFSEHHDEIA--------PMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDV 338

Query: 388 LVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFIT 447
           L+  +            T    ++        + ++ G   V +P+ K    PI +  I 
Sbjct: 339 LLTYSAPGTAPAKALASTGDPRYNR-------LWTLMGNPCVNVPVLKVGGLPIGVQVIA 391

Query: 448 YHGGDKFLLDT 458
             G D   L T
Sbjct: 392 RFGNDAHALAT 402

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.9 bits (237), Expect = 2e-21
 Identities = 80/490 (16%), Positives = 142/490 (28%), Gaps = 86/490 (17%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQ--------PLAGLKFA 79
           V    L +    N   N                          Q         L G+  +
Sbjct: 60  VFFTYLGKAWEVNKGTN------CVTSYL---------TDCETQLSQAPRQGLLYGVPVS 104

Query: 80  IKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGEN 139
           +K+ F  KG+ +  G    +     +E   VVV +L   GA     T + +        N
Sbjct: 105 LKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSN 162

Query: 140 KHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSH 199
             +G  +NP   S  PGGSS G    + +      LGTD  G +R P++FCGI G +P+ 
Sbjct: 163 PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTG 222

Query: 200 GTVSMIGVLP----NSQSLDTVGLLARNASILHRVGHVLL------QLNAVEPRRARRLI 249
             +S  G+       +    ++G +AR+   L      LL          V P   R  +
Sbjct: 223 NRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEV 282

Query: 250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVP-----SLKGLRAQ 304
           +           +     + S A+              G  +   +P     +L+ L A 
Sbjct: 283 YRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAG 342

Query: 305 STSPENGTATL--KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
               + G + L       V   L           W K     L   +F R+   +N+ + 
Sbjct: 343 GLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRP 402

Query: 363 NIKILY----KVRNEMRAALQRLLKDDKILVI--PTVSDPPLKLNTKKTYSAEFHDRTLV 416
                           R ++    K   + V+  P +          +   A      + 
Sbjct: 403 RSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGA------IS 456

Query: 417 LSSIGSMSGCCQVAIPIGKYNEH------------------------------PISISFI 446
            + + +        +P+                                    P+++  +
Sbjct: 457 YTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCV 516

Query: 447 TYHGGDKFLL 456
                ++  L
Sbjct: 517 ALPWQEELCL 526

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.1 bits (217), Expect = 1e-20
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 548 KTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAEKRLRK 602
           + + LD ++VKA+   G  +  +  Y+EA+ + + A  L  + +    +     LR 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 2e-17
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
            KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C K I 
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 552 LDKKNV-------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL---AEKRLR 601
           + ++N        KAY R G +      Y +A+  +  ++              AEK L+
Sbjct: 67  VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126

Query: 602 K 602
           +
Sbjct: 127 E 127

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 1e-16
 Identities = 45/125 (36%), Positives = 75/125 (60%)

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P  +G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+
Sbjct: 1   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 60

Query: 540 QQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKR 599
             A  D ++ I LDKK +K Y RR  +  AL  +  AL+D++  + ++P +K A +  + 
Sbjct: 61  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120

Query: 600 LRKLI 604
             K++
Sbjct: 121 CNKIV 125

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 73.5 bits (179), Expect = 8e-16
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------------NGTSATYYSNRA 530
           ++ + ++KEKG   FKG ++ +AV  Y + +                        + N A
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71

Query: 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
             YL+L  + +A E C K + LD  N K   RRG A+  +  +  A  DF+  + + PQN
Sbjct: 72  MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131

Query: 591 KAANLAEKRLRKLIG 605
           KAA L     +K   
Sbjct: 132 KAARLQIFMCQKKAK 146

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 4e-14
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA----------------IKLNGTS 522
           L D +  +  SE LK  GN  FK + W  A+  Y++                  KL   +
Sbjct: 17  LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA 76

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKH 582
            +   N  A  L++  +Q A + C + + +D  N KA  RR    + L  Y++AL D K 
Sbjct: 77  LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 136

Query: 583 AMVLEPQNKAANLAEKRLRKLIG 605
           A  + P++KA      ++++ I 
Sbjct: 137 AQEIAPEDKAIQAELLKVKQKIK 159

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 5e-14
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEA---------------IKLNGTSATYYSNRA 530
           ++ S ++KE+G   FK  ++ +A+  Y +                 K        + N A
Sbjct: 10  LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 69

Query: 531 AAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
             +L+L  F  A E C+K + LD  N K   RRG A  A+  +  A  DF+  + L P N
Sbjct: 70  MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129

Query: 591 KAANLAEKRLRKLIG 605
           KAA       ++ I 
Sbjct: 130 KAAKTQLAVCQQRIR 144

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 3e-13
 Identities = 40/116 (34%), Positives = 58/116 (50%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    LKEKGN A      + A+  YSEAIKL+  +   YSNR+AAY + G +Q+A ED 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
            KT+ L     K Y R+  A E L  + EA + ++  +  E  N       + +  
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 3e-13
 Identities = 10/93 (10%), Positives = 33/93 (35%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
             E  +  ++   +  A  +  +  +    +       ++ + +     ++    +  I 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAM 584
            +    +AY   G   +      EA++ ++HA+
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 3e-12
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
            +        ++    + A++ Y  AI+L       Y N A A  E G   +AE+  +  
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
           + L   +  +       +       EA++ ++ A+ + P+  AA  NLA 
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
              +      NA  +     +A + Y+ A++L  T A   +N A    E G  ++A    
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            K + +  +   A+    +  +      EAL  +K A+ + P    A  N+ 
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 5e-12
 Identities = 16/75 (21%), Positives = 30/75 (40%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
            N   +     +AV  Y +A+++    A  +SN A+   + G  Q+A     + I +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 556 NVKAYLRRGTAREAL 570
              AY   G   + +
Sbjct: 372 FADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 9e-11
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           + +      G       +   A++++ +A+ L+      Y N      E   F +A    
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 547 SKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA 596
            + +SL   +   +             + A+  ++ A+ L+P    A  NLA
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 2/72 (2%)

Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLE 587
             A    + G F+ AE  C +    +  N    L   +        + +      A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 588 PQNKAA--NLAE 597
           P    A  NL  
Sbjct: 64  PLLAEAYSNLGN 75

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR 563
           +  +A   Y +AI+     A  +SN    +   G    A     K ++LD   + AY+  
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209

Query: 564 GTAREALFCYNEALQDFKHAMVLEPQNKAA--NLAE 597
           G   +    ++ A+  +  A+ L P +     NLA 
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
           + +       +   +  +  +A+ +Y EAI+++ T A  YSN      E+ 
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + +L    +  F+ ++ +++ ++ + AIK N   A  YSN    Y E G  Q+A E  
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 64.6 bits (156), Expect = 6e-13
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSE----------------AIKLNGTSATYYSNR 529
           + ++  +KE+GN  FK  + N+A+  Y E                  K      +   N 
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73

Query: 530 AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
           A  Y +   + +A +  SK + +DK NVKA  + G A        EA ++   A  L P 
Sbjct: 74  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133

Query: 590 NKAANLAEKRLRKLIG 605
           N     + +     + 
Sbjct: 134 NLDIRNSYELCVNKLK 149

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 4e-12
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           L  +G  A   K W  A++ +S     +   +    N    Y  L    +AE+  +++I+
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPH---SRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR 601
            DK    AY +RG        Y+ A++D K A++    N+  +     L+
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 14/125 (11%), Positives = 37/125 (29%), Gaps = 16/125 (12%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           S +    G      K   +A   ++ +I  +   A  Y  R   Y +   +  A +D  +
Sbjct: 36  SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 95

Query: 549 TISLDKKN----------------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKA 592
            +   + N                 +              + +A +    A  ++ + + 
Sbjct: 96  ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155

Query: 593 ANLAE 597
           + + +
Sbjct: 156 SKIDK 160

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +    A    + N+ ++Y    ++    +     N A  Y +   +++AEE  +   S+ 
Sbjct: 91  KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQ 589
            +   + +            ++A++      + EP 
Sbjct: 151 SEPRHSKI------------DKAMECVWKQKLYEPV 174

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 61.3 bits (147), Expect = 8e-12
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 27/151 (17%)

Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------------GTSATY 525
           PL +    +  + L            ++++A      A++++            G  A  
Sbjct: 2   PLKE----VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC 57

Query: 526 YSNRAAAYLELGCFQQAEEDCSKTIS-----------LDKKNVKAYLRRGTAREALFCYN 574
           ++  A A   L  F +A     K +              K  + A   R  A + L    
Sbjct: 58  HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA 117

Query: 575 EALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605
           EA+ +FK  + +  + K     ++R+ ++  
Sbjct: 118 EAMPEFKKVVEMIEERKGETPGKERMMEVAI 148

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 20/100 (20%), Positives = 36/100 (36%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
              A    Q  +A+    EAIK +   A+  S+        G F++A+E   ++I L  +
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANL 595
            +    +     +A     +  Q    A VL    +    
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 12/72 (16%), Positives = 21/72 (29%)

Query: 529 RAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP 588
           +    L  G  QQA E   + I    K+                +  A +    ++ L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 589 QNKAANLAEKRL 600
           +        + L
Sbjct: 62  EYLPGASQLRHL 73

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 1/121 (0%)

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           N   D  +   E+G    +      AV  +  A++ +      +        E      A
Sbjct: 14  NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 72

Query: 543 EEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK 602
                + + L   N  A +    +        +A +  +  +   P         +    
Sbjct: 73  ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG 132

Query: 603 L 603
            
Sbjct: 133 G 133

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 15/110 (13%), Positives = 44/110 (40%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           G       +++KAV+ ++ A+ +       ++   A        ++A     + + L   
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 556 NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG 605
            +++    G +   L  + EA++ F  A+ ++ +++        + + I 
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 288

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 6e-09
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 462 LYDSLQEQVNIASNLVPLPDTNGS-----IDASELLKE----KGNAAFKGKQWNKAVNYY 512
           LY    E     +++ P+P  +G      I  S+  ++          + ++  +A    
Sbjct: 11  LYRDRAE----WADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 66

Query: 513 SEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYLRRGTAREALF 571
            +AI+LN  + T +  R      L     +     +  I    KN + +  R    E L 
Sbjct: 67  RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 126

Query: 572 CYNEALQDFKHAMVLEPQN 590
             ++ L+     +  + +N
Sbjct: 127 DPSQELEFIADILNQDAKN 145

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           E    AF     +++  +Y   +                   L    ++ ++  +    +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 554 KKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAA--NLA-----EKRLRKL 603
           K  +   +    A + L    E LQ F     ++P   A   +L      E  + K+
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 329

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
           +      +     A        + + Y+S    ++   A Y  +  + +L      + E 
Sbjct: 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 331

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (115), Expect = 8e-07
 Identities = 36/278 (12%), Positives = 76/278 (27%), Gaps = 33/278 (11%)

Query: 335 EEWVKSAKPRLGYNVF------ERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKIL 388
           +   K   P  G+          +  EA +        +Y++R E+  A    LK     
Sbjct: 9   KRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCV-QAATIYRLRKELNLAGDSFLKAADYQ 67

Query: 389 VIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPI-GKYNEHPISISFIT 447
                     K   +      + +      S G+              +           
Sbjct: 68  ---------KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118

Query: 448 YHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNK 507
           +      +L+  L  Y    +   +A        +    +      +  +      Q+ +
Sbjct: 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF--IKCADLKALDGQYIE 176

Query: 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR 567
           A + YS+ IK +  +     +    +L+ G  Q A  D        ++          +R
Sbjct: 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236

Query: 568 EALFC--------------YNEALQDFKHAMVLEPQNK 591
           E+ F                +E  ++F + M L+    
Sbjct: 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 8/118 (6%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
           +A++L  +        K+ N A + + +A      +         Y      +   G   
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94

Query: 541 QAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK 598
            A +     I +     +         E        L D+  A+  +    A     +
Sbjct: 95  NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAI--DCYELAGEWYAQ 150

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 462 LYDSLQEQVNIA--SNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
           L  +LQ++V +A    ++          A +LL E+G           A N +S+A+ + 
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERA-QLLYERGVLYDSLGLRALARNDFSQALAIR 67

Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQD 579
                 ++       + G F  A E     + LD     A+L RG A         A  D
Sbjct: 68  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 127

Query: 580 FKHAMVLEPQNKAANL 595
                  +P +   +L
Sbjct: 128 LLAFYQDDPNDPFRSL 143

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 1/102 (0%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLR 562
           KQ  + +  + E                    E    ++ + D +   SL +   +    
Sbjct: 155 KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY 214

Query: 563 RGTAREALFCYNEALQDFKHAMVLEPQN-KAANLAEKRLRKL 603
            G    +L   + A   FK A+     N      A   L  L
Sbjct: 215 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLL 256

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 8/98 (8%), Positives = 19/98 (19%), Gaps = 5/98 (5%)

Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT 565
            ++  Y  +A  L           A  +      Q       K +  D +          
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59

Query: 566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL 603
                  +   +   +           + +       L
Sbjct: 60  LWNH--AFKNQITTLQGQAKNRANPNRSEVQANLSLFL 95

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 31/94 (32%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
           S      L   G+ A    Q ++A +YY  A +L  ++   Y+  A      G       
Sbjct: 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207

Query: 545 DCSKTISLDKKNVKAYLRRGTAREALFCYNEALQ 578
              ++I++      A      A        + ++
Sbjct: 208 YYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 17/134 (12%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAE 543
            S   K +            A N+     K    +       + N A A + LG F+ AE
Sbjct: 212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 271

Query: 544 EDCSKTISLDKKNV-------------KAYLRRGTAREALFCYNEALQDFKHAMVLEPQN 590
               +     +                + Y + G   +A     +AL+       +    
Sbjct: 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 331

Query: 591 KAANLAEKRLRKLI 604
                  ++LR+LI
Sbjct: 332 IEGEAMAQQLRQLI 345

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 514 EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-----VKAYLRRGTARE 568
           + I+ +   A + + RA   +  G   +AE      +           + A    G    
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 569 ALFCYNEALQDFKHAMVLEPQN 590
                  +L   +    +  Q+
Sbjct: 63  CKGELTRSLALMQQTEQMARQH 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	605
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.6
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.46
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.43
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.43
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.28
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.27
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.24
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.23
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.14
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.1
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.08
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.06
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.03
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.96
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.88
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.48
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.44
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.31
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.25
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.01
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.91
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.55
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.43
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.29
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.2

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.5e-85  Score=703.95  Aligned_cols=411  Identities=23%  Similarity=0.302  Sum_probs=320.6

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (605)
                      +.+|++||++.+++||+++||.+|||++..++.+++      .+||||||||+|||+|+++|++||+||+.|++  .++.
T Consensus        18 ~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~------~~gpL~GvPi~vKD~~~~~g~~tt~Gs~~~~~--~~~~   89 (475)
T d2gi3a1          18 SEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------KKGKFWGIPVAIKDNILTLGMRTTCASRILEN--YESV   89 (475)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------CCSTTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhhh------ccCCCCCCEEEEEcccCCCCCccCccChhhcC--CCCC
Confidence            459999999999999999999999999998877654      35899999999999999999999999999975  6789


Q ss_pred             CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (605)
Q Consensus       107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P  186 (605)
                      +||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++++|||||||||||||+|++|+|||||||||||+|
T Consensus        90 ~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~GtD~gGSiR~P  169 (475)
T d2gi3a1          90 FDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP  169 (475)
T ss_dssp             SCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHH
T ss_pred             CCcceeeehhhcCCccccccchhhcccccccccchhcccccccccccccCcccccchhhhhhcCcceEeecCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC----------------cccCceeee
Q 007401          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE----------------PRRARRLIF  250 (605)
Q Consensus       187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----------------~~~~~~l~~  250 (605)
                      |+||||||||||+||||+.|++|+++++|++||||||++|++.+++++.+.+..+                ...+.++.+
T Consensus       170 A~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~~~~~~~~~ri~~  249 (475)
T d2gi3a1         170 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAV  249 (475)
T ss_dssp             HHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEE
T ss_pred             hHHhCceeecCCCCCCCCCCCCCCCCCCCccCCccCCHHHHHHHhhhhhccccccccccccccccchhccccccccceee
Confidence            9999999999999999999999999999999999999999999999987643211                112335555


Q ss_pred             ccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhh
Q 007401          251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE  329 (605)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e  329 (605)
                      ..+.+  ....++++.++++++++.|+..+        +.|+ ...|.+.+....+        ......+....+..+.
T Consensus       250 ~~~~~--~~~~~~~v~~a~~~a~~~L~~~G--------~~V~ev~~p~~~~~~~~~--------~~i~~~e~~~~l~~~~  311 (475)
T d2gi3a1         250 PEEIY--EHDIEEGVSERFEEALKLLERLG--------AKVERVKIPHIKYSVATY--------YVIAPAEASSNLARFD  311 (475)
T ss_dssp             EGGGG--GSCCCHHHHHHHHHHHHHHHHTT--------CEEEEECCTTGGGHHHHH--------HHHHHHHHHTC-----
T ss_pred             eeccc--cCCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHHHHHHH--------HHHHHHHHHHHHHHhh
Confidence            54433  22345788999999999886333        2222 2334433211100        0000001000000000


Q ss_pred             ---------hHhhHHHHHHhcCCCCChhHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCC
Q 007401          330 ---------FKTIYEEWVKSAKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSD  395 (605)
Q Consensus       330 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~  395 (605)
                               .....+.+.......+++.++.++..+....     ...+.++.+.|..+++.+.++|+++|+||+||+|.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~  391 (475)
T d2gi3a1         312 GVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPV  391 (475)
T ss_dssp             -------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSS
T ss_pred             cchhhhhcccccHHHHHHhhhhcccCHHHHHHHHhcchhhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC
Confidence                     0001111222223345677777766554333     33345677788888999999999999999999999


Q ss_pred             CCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          396 PPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       396 ~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      +||++++...... + ..+..||.++|++|+|++|||+|+++|||+|+|+++++++|..|++++..+|+.
T Consensus       392 ~a~~~~~~~~~~~-~-~~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~  459 (475)
T d2gi3a1         392 TAFKIGEIKDPLT-Y-YLMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKN  459 (475)
T ss_dssp             CCCBTTTCCCHHH-H-HTTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcccccchHH-H-hhhhHHHHHHHHHCCCeEEEeCCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHc
Confidence            9999986432221 1 123358999999999999999999999999999999999999999999999875

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.2e-84  Score=704.92  Aligned_cols=439  Identities=16%  Similarity=0.173  Sum_probs=342.0

Q ss_pred             CccceeecCCCCchhHHHHHHHhhhh-----HHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCce
Q 007401            3 KSFNIIKTNTSNPKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLK   77 (605)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp   77 (605)
                      +.|.+.++++...++...++.+|+++     +|++|+++++++||++.|+.+|||++.+++++.+.+ .+...|||||||
T Consensus        24 ~~~~~~~~~~~~~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a-~~~~~gpL~GvP  102 (537)
T d1mt5a_          24 QRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS-QAPRQGLLYGVP  102 (537)
T ss_dssp             HHHHTTCCSSCSHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH-TCCTTSTTTTCE
T ss_pred             HhhhhcCCCCChHHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHH-cCCCCCCcCCCe
Confidence            34666667777777888888888855     999999999999999999999999999887765443 345689999999


Q ss_pred             EEEeeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 007401           78 FAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG  157 (605)
Q Consensus        78 ~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GG  157 (605)
                      |+|||+|+|+|++||+||+.|.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++++|||
T Consensus       103 i~vKD~~~~~g~~tt~Gs~~~~~--~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~~~~GG  180 (537)
T d1mt5a_         103 VSLKECFSYKGHDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGG  180 (537)
T ss_dssp             EEEETTSCCBTSBCCSSCGGGSS--CBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTTSCCCS
T ss_pred             EEeEcccCcCCCccCccChhhcC--CCCCccHHHHHHHHhCCCEEeecccccccccccchhhhhhcccccccccccccCC
Confidence            99999999999999999999975  6889999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCC----CCccccccccCHHHHHHHHHH
Q 007401          158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ----SLDTVGLLARNASILHRVGHV  233 (605)
Q Consensus       158 SSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~  233 (605)
                      ||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|.++    ++|++|||+||++|++.++++
T Consensus       181 SSgGsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~  260 (537)
T d1mt5a_         181 SSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKA  260 (537)
T ss_dssp             SSHHHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred             CcCCccccccccccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988754    569999999999999999999


Q ss_pred             HccCC------------CC----CcccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccc-ccCc
Q 007401          234 LLQLN------------AV----EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVP  296 (605)
Q Consensus       234 ~~~~~------------~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~-~~~p  296 (605)
                      +.+.+            +.    ....+.++.+..+..  ...+++++.+++.++++.|+..+        +.|+ ...|
T Consensus       261 l~g~d~~d~~~~~~~~~~~~~~~~~~k~lRIg~~~~~~--~~~~~p~v~~a~~~a~~~L~~~G--------a~Vvev~~~  330 (537)
T d1mt5a_         261 LLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAG--------HTLIPFLPN  330 (537)
T ss_dssp             HSSHHHHHSCTTSCCCCCCHHHHSCCSCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTT--------CEEEECCCT
T ss_pred             hcCCCccccccccCcchhhhhhhhcccccceeeecccc--cccccHHHHHHHhhhHHhhcccc--------ceEEecCCc
Confidence            87531            00    011234555544432  23356889999999999986322        2222 2223


Q ss_pred             chhhhhhcC------C----------CCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcCCCCChhHHHHHHHHhcCC
Q 007401          297 SLKGLRAQS------T----------SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT  360 (605)
Q Consensus       297 ~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  360 (605)
                      .+.......      .          ..+.....+..+.      ...+........+......+.+.+...++.+...+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (537)
T d1mt5a_         331 NIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLI------LILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRS  404 (537)
T ss_dssp             THHHHHHTTHHHHHSTTTTHHHHGGGTTCCCCGGGTTHH------HHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSCCB
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHH------HHHhhhhHHHHHHHHHhhcccHHHHHHHHhcccch
Confidence            322111100      0          0000000000000      00011111222223333455677777788888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeeccc---
Q 007401          361 QDNIKILYKVRNEMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK---  435 (605)
Q Consensus       361 ~~~~~~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~---  435 (605)
                      ..+|.+++..|..+++.+.++|+  ++|+||+||++ ++++++....     ...++.||.+||++|+|++|||+|+   
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~-----~~~~~~~T~~~NllG~PaisvP~g~v~~  478 (537)
T d1mt5a_         405 AEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGR-----ATGAISYTVLYNCLDFPAGVVPVTTVTA  478 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC-SCCCSSCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCC-CccCcCChhh-----hhcccchHHHHHHhCCCeEEEEcCcccc
Confidence            99999999999999999999996  68999999987 5555553211     1234568999999999999999996   


Q ss_pred             --------------------------C-CCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          436 --------------------------Y-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       436 --------------------------~-~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                                                + +|||+|+|+++++++|+.+|+++..+|+.+
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         479 EDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             TTTTGGGSCCCSSCSHHHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence                                      3 699999999999999999999999998754

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=8.7e-84  Score=694.64  Aligned_cols=418  Identities=23%  Similarity=0.310  Sum_probs=330.8

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEEeeccCCCCcccCCCchhhh
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~   99 (605)
                      +.+|++|+++.+++||++.|+.+|||++..++.|+++|+       .++.+||||||||+|||+|+|+|++||+||+.|.
T Consensus        18 ~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g~~tt~Gs~~~~   97 (485)
T d2f2aa1          18 KKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLE   97 (485)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTBCCCTTCGGGT
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCCCccCCcChhhc
Confidence            449999999999999999999999999998887776654       3567899999999999999999999999999998


Q ss_pred             hcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCC
Q 007401          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT  179 (605)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~  179 (605)
                      +  ..+.+|+++|++|+++|||++||||||||+++.++.|.+||+|+||||++++|||||||||||||+|++|+||||||
T Consensus        98 ~--~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaavA~g~~~~alGtDt  175 (485)
T d2f2aa1          98 G--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT  175 (485)
T ss_dssp             T--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSCEEEECS
T ss_pred             c--CCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhhHHhccCceEEecCC
Confidence            6  57789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC-----------------c
Q 007401          180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-----------------P  242 (605)
Q Consensus       180 gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~  242 (605)
                      |||||+||+||||||||||+||||+.|++|+++++|++|||||+++|++.+++++.+.+..+                 .
T Consensus       176 ~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~~~~~~~~~~~~  255 (485)
T d2f2aa1         176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKD  255 (485)
T ss_dssp             SSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCCCCCCSTTTTCC
T ss_pred             CchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCCccchhhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999987643211                 1


Q ss_pred             ccCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCccccccccc-cccCcchhhhhhcCCCCCCchhHHHHHHHH
Q 007401          243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (605)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  321 (605)
                      ..+.++.++.+.+.  ...++++.++++++++.|+..+.        .| +...|........+        ......+.
T Consensus       256 ~~~lrig~~~~~~~--~~~~~~i~~a~~~a~~~L~~~G~--------~v~ev~lp~~~~~~~~~--------~~~~~~e~  317 (485)
T d2f2aa1         256 IKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGA--------VVEEVSLPNTKFGIPSY--------YVIASSEA  317 (485)
T ss_dssp             CTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTC--------EEEEECCTTGGGHHHHH--------HHHHHHHH
T ss_pred             ccCCEEEEEccccc--CcCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchhhhHHHH--------HHHHHHHH
Confidence            12345666555432  23457888999999998863332        22 22333322110000        00000011


Q ss_pred             HHHhhhh----------hhHhhHHHHHHhcCCCCChhHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 007401          322 MLSLQRY----------EFKTIYEEWVKSAKPRLGYNVFERVLEA-----INTTQDNIKILYKVRNEMRAALQRLLKDDK  386 (605)
Q Consensus       322 ~~~l~~~----------e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D  386 (605)
                      ...+..+          +......-+.......+++.+..++..+     ..+....+.++++.+..+++.++++|+++|
T Consensus       318 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~D  397 (485)
T d2f2aa1         318 SSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYD  397 (485)
T ss_dssp             HHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            1111110          0000011111222334677777776554     345556788889999999999999999999


Q ss_pred             EEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhH
Q 007401          387 ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (605)
Q Consensus       387 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~  465 (605)
                      +||+||++.+||++++......... ....||.++|++|+|++|||+|..+|+|+|+|+++++++|..|+++++.+|+.
T Consensus       398 ~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~LL~~A~~~E~~  475 (485)
T d2f2aa1         398 VVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQ  475 (485)
T ss_dssp             EEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCCcccccCCHHHHh-hhhHHHHHHHHHCCCeEEEECCCCCCCCEeEEEECCCCCHHHHHHHHHHHHhh
Confidence            9999999999999986543322221 22347999999999999999999999999999999999999999999998864

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=4.9e-82  Score=666.96  Aligned_cols=393  Identities=24%  Similarity=0.302  Sum_probs=330.3

Q ss_pred             hhHHHHHHHHHhhcCcccCCCCcCceeeecccCCCCCCCCCCCCCCCCCceEEEeeccCCCCcccCCCchhhhhcCCCCC
Q 007401           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (605)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~~~~gpL~Gvp~~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (605)
                      +.+|++|+++.+++||++.||.+|||++..++ +     .++.+||||||||+|||+|+|+|++||+||+.|.+  .++.
T Consensus        14 ~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~-~-----~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~   85 (412)
T d1ocka_          14 GELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-A-----RAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRG--WQPR   85 (412)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-C-----CCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTT--CCCS
T ss_pred             CCCCHHHHHHHHHHHHHHhCcccCChHhhhHH-h-----cCccCCCcCCCEEEEEcccCCCCCcccccChhhhC--CCCc
Confidence            44999999999999999999999999986322 1     24568999999999999999999999999999975  6789


Q ss_pred             CChHHHHHHHhCCCeEeeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhcCCceeeccCCCCccchh
Q 007401          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (605)
Q Consensus       107 ~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtD~gGSiR~P  186 (605)
                      +|+++|+||+++|||++||||||||+++      .+|.++|||++.++|||||||||++||+|++++|+|||||||||+|
T Consensus        86 ~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~P  159 (412)
T d1ocka_          86 SDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRP  159 (412)
T ss_dssp             SCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred             ceeeEEeeecccccccchhhhhhhhhcc------ccccccccccccccCCCcCCCceeeeecccccccCccccccccccc
Confidence            9999999999999999999999999976      4788999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHccCCCCC---cccCceeeeccchhhhcCCchh
Q 007401          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE---PRRARRLIFADDIFQLSKVPKL  263 (605)
Q Consensus       187 Aa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~  263 (605)
                      |+||||||||||+||||+.|++|.++++|++|||+|+++|++.+++++.+.+..+   +....++.+..+.+  ....++
T Consensus       160 Aa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~--~~~~~~  237 (412)
T d1ocka_         160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEF--AGAVEP  237 (412)
T ss_dssp             HHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGG--GCCCCH
T ss_pred             hhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHhhcCCCcccccCCccccccccccccc--cccchh
Confidence            9999999999999999999999999999999999999999999999987654222   22333444444433  233467


Q ss_pred             hHHHHHHHHHHHHhCCCCCccccccccccc-cCcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHHhcC
Q 007401          264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK  342 (605)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~  342 (605)
                      ++.+.+.++++.|+..+        +.+.+ ..+..                .......+..+..++....+..++....
T Consensus       238 ~v~~~~~~a~~~L~~~G--------~~v~e~~~~~~----------------~~~~~~~~~~~~~~e~~~~~~~~~~~~~  293 (412)
T d1ocka_         238 AAEQGLQAAIKAAERAG--------ASVQAIDLPEA----------------VHEAWRIHPIIQDFEAHRALAWEFSEHH  293 (412)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CEEEECCCCHH----------------HHHHHHHHHHHHHHHHHHHTHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHhh--------hccccccccch----------------hhhhhhhhhhhhhHHHHHHHHHhhcccc
Confidence            88999999999886333        22222 22211                1111222233444566666666777777


Q ss_pred             CCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhccccc
Q 007401          343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS  422 (605)
Q Consensus       343 ~~~~~~~~~~~~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n  422 (605)
                      ..+.+.++.+++.+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||.++.....       ...||.++|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~-------~~~~t~~~n  366 (412)
T d1ocka_         294 DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRLWT  366 (412)
T ss_dssp             GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CCTTTHHHH
T ss_pred             ccchhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHcCCCEEEeCCCCCCCccccccccC-------ChHHhHHHH
Confidence            8889999999999999999999999999999999999999999999999999999887643221       124789999


Q ss_pred             ccCCceeeeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       423 l~G~PaisvP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      ++|+|++|||+|..+|+|+|+|+++++++|..+++++..+|+.+
T Consensus       367 l~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL~~A~~~E~al  410 (412)
T d1ocka_         367 LMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDAL  410 (412)
T ss_dssp             HHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCCeEEEeccCCCCceEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            99999999999988999999999999999999999999998865

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=2.4e-80  Score=669.65  Aligned_cols=412  Identities=22%  Similarity=0.235  Sum_probs=304.2

Q ss_pred             hhHHHHHHHhhhh-----HHHHHHHHHhhcCcc---cCCCCcCceeeecccCCCCCCC-------CCCCCCCCCCceEEE
Q 007401           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKL---NGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAI   80 (605)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~a~~~a~-------~~~~~gpL~Gvp~~v   80 (605)
                      ++...|+.+|++.     +|++|+++++++||+   +.||.+|||++.+++ ++++|+       .++.+||||||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEE
Confidence            3444567777744     999999999999986   567999999998765 555442       467889999999999


Q ss_pred             eeccCCCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEeeecccccccccCCCC-----CCCCCCCCCCCCCCCCC
Q 007401           81 KDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGE-----NKHYGTPVNPQMPSHIP  155 (605)
Q Consensus        81 KD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGai~~GKt~~~e~~~~~~~~-----n~~~G~~~NP~~~~~~~  155 (605)
                      ||+|+|+|++||+||+.|.+  .. .+||++|++|+++|||++||||||||+++.+|+     |++||+|+||||++++|
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~--~~-~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~  158 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQG--FR-PDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP  158 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTT--CC-CCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred             EcccccCCCccCCcchhhcc--cC-CccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccCC
Confidence            99999999999999999975  33 479999999999999999999999999988765     99999999999999999


Q ss_pred             CCCchHHHHHHHhcCCceeeccCCCCccchhhhhcccccccCCCCCccCCCCccCCCCCccccccccCHHHHHHHHHHHc
Q 007401          156 GGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLL  235 (605)
Q Consensus       156 GGSSgGsaaaVAag~~~~a~GtD~gGSiR~PAa~~Gv~GlkPt~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~  235 (605)
                      |||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.
T Consensus       159 GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~vl~  238 (490)
T d1m22a_         159 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA  238 (490)
T ss_dssp             CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCcc---------------------cCceeeeccchhhhcCCchhhHHHHHHHHHHHHhCCCCCcccccccccccc
Q 007401          236 QLNAVEPR---------------------RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN  294 (605)
Q Consensus       236 ~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~l~~~v~~~  294 (605)
                      +.+..++.                     ...++.+....+    ...+.+...+.++++.+...+.       ..++..
T Consensus       239 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~a~~~l~~~g~-------~v~ev~  307 (490)
T d1m22a_         239 GRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL----LKYRGMPPLIEQAATELRRAGA-------VVVPVE  307 (490)
T ss_dssp             CCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG----GGSTTHHHHHHHHHHHHHHTTC-------EEEEEC
T ss_pred             cccccCcccchhccccccchhhhcccccccccccccccccc----ccccchhhhhhhhHHHHhhccc-------ceeecc
Confidence            65432110                     011111111111    1234566677777777652221       111223


Q ss_pred             CcchhhhhhcCCCCCCchhHHHHHHHHHHHhhhhhhHhhHHHHHH---------------------hcCCCCChhHHHHH
Q 007401          295 VPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVK---------------------SAKPRLGYNVFERV  353 (605)
Q Consensus       295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~---------------------~~~~~~~~~~~~~~  353 (605)
                      .|.+.....                 .+..+..+++...+..++.                     .....+++.+....
T Consensus       308 ~p~~~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (490)
T d1m22a_         308 LPNQGAWAE-----------------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEA  370 (490)
T ss_dssp             CTTTTTTHH-----------------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHH
T ss_pred             CCchHHHHH-----------------HHHHHHHHHHHhhhhhHhhhcccccchHHHHHHHHHhhhhccccccchhhhHHH
Confidence            333221100                 0011112222222222222                     22334445555554


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHH--HHHHH--HhCCCcEEEEeCCCCCCccCCcccccchhhhhchhhhcccccccCCcee
Q 007401          354 LEAINTTQDNIKILYKVRNEMR--AALQR--LLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQV  429 (605)
Q Consensus       354 ~~~~~~s~~~~~~a~~~r~~~~--~~~~~--~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai  429 (605)
                      ..........+..+++.+.++.  ..++.  .|+++|+||+||++.++|.......       ....+|.++|++|+|++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~-------~~~~~t~~~Nl~G~Pai  443 (490)
T d1m22a_         371 DATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDD-------FPGESYSAAAVAGYPSL  443 (490)
T ss_dssp             HTCCCTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---C-------CTTCCHHHHHHHTCCEE
T ss_pred             HHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCccccc-------chHHHHHHHHHhCCCEE
Confidence            4444444455544443333332  23333  4689999999999988775443211       12346788999999999


Q ss_pred             eeecccCCCCCceeEEeeccCCchhHHhHHHHHHhHH
Q 007401          430 AIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (605)
Q Consensus       430 svP~G~~~glp~g~~~~~~~~~d~~ll~~a~~l~~~~  466 (605)
                      |||+|+.+|||+|+|+++++++|..+|+++..+|+.+
T Consensus       444 svP~G~~~GLPvGlQlig~~~~D~~LL~~A~~lE~~~  480 (490)
T d1m22a_         444 TVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT  480 (490)
T ss_dssp             EEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCceeEEEECCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999988754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.8e-18  Score=141.98  Aligned_cols=115  Identities=35%  Similarity=0.444  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+..+.+.|+.+++.|+|++|+..|+++|+.+|+++.+|.++|.+|..++++++|+.+|+++++++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      ..+|++++|+.+|+++++++|+++.++..+..+..
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=142.70  Aligned_cols=116  Identities=37%  Similarity=0.638  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA  566 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  566 (605)
                      +.++.+..+|+.+++.|+|++|+.+|+++++++|+++.+|+++|.+|+.+|++++|+.+|+++++++|++..+|+++|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          567 REALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       567 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +..+|++++|+.+|+++++++|++..++..+..+..
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999998888776643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.8e-16  Score=143.19  Aligned_cols=102  Identities=34%  Similarity=0.558  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ++.+.+.|+.+++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.+|++|++++|+++.+|+++|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCC
Q 007401          569 ALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~  590 (605)
                      .+|++++|+.+|+++++++|++
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999998754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.64  E-value=3.5e-15  Score=131.84  Aligned_cols=119  Identities=26%  Similarity=0.301  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----------------ATYYSNRAAAYLELGCFQQAEEDCSKT  549 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~a  549 (605)
                      .+.+..+...|+.+|+.|+|.+|+..|++++...+..                ..++.++|.||++++++++|+++|+++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            4567889999999999999999999999999865432                247889999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          550 ISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       550 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      ++++|++..+|+++|.+|..+|++++|+.+|+++++++|+|..+...+..+..++
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.7e-15  Score=132.46  Aligned_cols=117  Identities=30%  Similarity=0.396  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~  551 (605)
                      ..+..+.+.|+.+++.|+|++|+..|++++...|..               ..++.++|.||+++++|++|+.+++++++
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            457888999999999999999999999999987653               35678999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          552 LDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       552 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ++|+++.+|+++|.+|..+|++++|+.+|+++++++|+|..+...+..+...
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888887654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.1e-14  Score=139.91  Aligned_cols=118  Identities=19%  Similarity=0.086  Sum_probs=111.3

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+..+..++.+|.+|++.|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.+++++|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      .++..+|++++|++.|+++++++|++......+.....
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  150 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ  150 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999887766655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.59  E-value=1.9e-14  Score=129.20  Aligned_cols=118  Identities=32%  Similarity=0.473  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al  550 (605)
                      ...+..+.+.|+.+++.|+|++|+..|++++...+..               ..++.++|.||+.+++|.+|+.++++++
T Consensus        12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            3567889999999999999999999999999764432               4568899999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +++|++..+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus        92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1.6e-14  Score=129.83  Aligned_cols=118  Identities=29%  Similarity=0.463  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007401          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----------------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (605)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  550 (605)
                      ..++.+...|+.++..|+|++|+..|+++++.                +|.+..++.++|.+|.++++|++|+.+|++++
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            44567788999999999999999999999864                45667889999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          551 SLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       551 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      +++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+...+..+...+
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888876553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-14  Score=120.99  Aligned_cols=113  Identities=28%  Similarity=0.415  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV-------KAY  560 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  560 (605)
                      .+..+.++|+.+++.|+|++|+.+|+++++++|+++.++.++|.+|.++++|++|+.+|+++++++|++.       .+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            5778899999999999999999999999999999999999999999999999999999999999998774       477


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      +++|.++..++++++|+++|++++..+++ ......+..+.
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~  122 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE  122 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            77888899999999999999999999874 55555555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=2.7e-14  Score=118.73  Aligned_cols=96  Identities=14%  Similarity=0.024  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...++.+|..+++.|++++|+..|++++..+|+++.+|..+|.++..++++++|+.+|+++++++|++..+|+.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHH
Q 007401          569 ALFCYNEALQDFKHAM  584 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al  584 (605)
                      .+|++++|++++++.|
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999976

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=122.13  Aligned_cols=112  Identities=14%  Similarity=0.056  Sum_probs=101.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q 007401          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKN--VKAYLRRGTAR  567 (605)
Q Consensus       493 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~  567 (605)
                      .++.+.+...+++++|.+.|++++.++|+++.+++++|.+++..+   ++++|+..|+++++.+|++  ..+|+++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            356788899999999999999999999999999999999998644   5678999999999999865  45899999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      .++|++++|+++|+++++++|++..+......+..++
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.8e-13  Score=122.02  Aligned_cols=113  Identities=22%  Similarity=0.248  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      +..+++.|..++..|+|++|++.|++   +.+.++.+|+++|.+|+.+|+|++|+++|++|++++|+++.+|+++|.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            44566789999999999999999987   466789999999999999999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHhh
Q 007401          569 ALFCYNEALQDFKHAMVLEPQN----------------KAANLAEKRLRKLI  604 (605)
Q Consensus       569 ~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~~~  604 (605)
                      ++|++++|++.|++++...+.+                ..++..++.++..+
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~  133 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK  133 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC
Confidence            9999999999999999876654                24555666665554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=136.08  Aligned_cols=120  Identities=13%  Similarity=0.041  Sum_probs=112.9

Q ss_pred             ChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRR  563 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  563 (605)
                      +|....+|+.+|.++...+ ++++|+..|+++++.+|++..+|.++|.++..+|++++|+++++++++++|++..+|+++
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            6788999999999999876 599999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 007401          564 GTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLI  604 (605)
Q Consensus       564 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  604 (605)
                      |.++..+|++++|+++|+++++++|.+..++.+++.++..+
T Consensus       153 ~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999888876543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.7e-13  Score=133.66  Aligned_cols=123  Identities=15%  Similarity=0.062  Sum_probs=116.9

Q ss_pred             CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ...|...+++..+|.++.+.+++++|++.|+++|+++|++..+|+++|.++..++ ++++|+++++++++++|++..+|+
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3467889999999999999999999999999999999999999999999999987 599999999999999999999999


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          562 RRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       562 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++|.++..+|++++|++.++++++++|++..++..++.++..+|
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  160 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=2.3e-13  Score=118.66  Aligned_cols=106  Identities=19%  Similarity=0.122  Sum_probs=95.2

Q ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----------GCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       498 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +++++|++.|+++++++|+++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            455677899999999999999999999999999999854          4568999999999999999999999999999


Q ss_pred             HHccC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          568 EALFC-----------YNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       568 ~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ..+|+           |++|+++|+++++++|++..++..++.....
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            88764           7999999999999999999999888876543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.7e-13  Score=135.00  Aligned_cols=120  Identities=19%  Similarity=0.097  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      |+....+..+|..+...|++++|++.|++++...|.+...+..++.++...|++++|++.|+++++++|+++.+++++|.
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  347 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|..+|++++|+++|+++++++|++..++..++.++..+|
T Consensus       348 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.9e-12  Score=118.47  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN------------  556 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------  556 (605)
                      +..|+++|.+++..|+|++|++.|+++++++|+++.+|+++|.+|.++|+|++|+++|++++...+.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            56899999999999999999999999999999999999999999999999999999999999876543            


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          557 ----VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       557 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                          .++++++|.++..+|++++|++.|++++++.|+.
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                4789999999999999999999999999998875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.2e-12  Score=126.65  Aligned_cols=107  Identities=13%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      .+..+..+|..+...|++++|+..|++++..+|+++.+|.++|.+|..+|++++|++.|+++++++|+++.+|+++|.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      ..+|++++|++.|+++++++|++....
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            999999999999999999999887643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-11  Score=123.85  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +.....+..+|..+++.|++++|+..|+++++++|+++.++.++|.++...+++.+|++.+++++...|.+...++.++.
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          566 AREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       566 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      ++...|++++|++.|+++++++|++..++..++.++..+|
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999987765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.28  E-value=9.3e-12  Score=109.71  Aligned_cols=102  Identities=19%  Similarity=0.205  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-  555 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-  555 (605)
                      +..+...|+.++..|+|++|+..|++++.+.|+.            +.+|.++|.+|..+|+|++|++++++++++.++ 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            3444555999999999999999999999988764            468999999999999999999999999987542 


Q ss_pred             ----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 007401          556 ----------NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQN  590 (605)
Q Consensus       556 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  590 (605)
                                ...+++++|.+|..+|++++|+++|++++++.|+.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                      24478999999999999999999999999996533

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=2.2e-11  Score=116.25  Aligned_cols=109  Identities=18%  Similarity=0.098  Sum_probs=100.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--------  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------  556 (605)
                      +|+.+..|+.+|.++.+.|++++|++.|+++++++|+++.+++++|.+|..+|++++|++.|+++++++|++        
T Consensus        67 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  146 (259)
T d1xnfa_          67 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  146 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            356688999999999999999999999999999999999999999999999999999999999999998865        


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHHHccCHH
Q 007401          557 --------------------------------------------------------------VKAYLRRGTAREALFCYN  574 (605)
Q Consensus       557 --------------------------------------------------------------~~~~~~la~~~~~~g~~~  574 (605)
                                                                                    ..+|+++|.+|..+|+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  226 (259)
T d1xnfa_         147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  226 (259)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHH
Confidence                                                                          347888999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHH
Q 007401          575 EALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       575 ~A~~~~~~al~~~p~~~~~  593 (605)
                      +|+++|+++++.+|++...
T Consensus       227 ~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         227 SATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHHcCCCCHHH
Confidence            9999999999999987433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.3e-11  Score=97.25  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYL  561 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  561 (605)
                      ++.++++|..+++.|+|++|+.+|++++++.|.+       ..++.++|.++.++|++++|++.|+++++++|+++.+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678899999999999999999999999875543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 007401          562 RRGTAREAL  570 (605)
Q Consensus       562 ~la~~~~~~  570 (605)
                      +++.....+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            987766544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.3e-11  Score=118.31  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 007401          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL  570 (605)
Q Consensus       491 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  570 (605)
                      .++++|..+++.|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+.+|+++++++|++...|+.+|.+|...
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCH
Q 007401          571 FCYNEALQDFKHAMVLEPQNK  591 (605)
Q Consensus       571 g~~~~A~~~~~~al~~~p~~~  591 (605)
                      |++++|++.+++++..+|.+.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccchhhHHHhccchH
Confidence            999999999999999998754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=97.11  Aligned_cols=84  Identities=18%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .|..+..|..+|.++.+.|+|++|+..|+++++++|+++.+|+++|.++..++++++|+.+|+++++++|+++.++..++
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 007401          565 TARE  568 (605)
Q Consensus       565 ~~~~  568 (605)
                      .+..
T Consensus       113 ~l~~  116 (117)
T d1elwa_         113 NMEA  116 (117)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=1.6e-10  Score=102.95  Aligned_cols=92  Identities=16%  Similarity=0.183  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGT  565 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  565 (605)
                      +..+..+.++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|+.+++|++|+.+|+++++++|++..++..++.
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCHHHHH
Q 007401          566 AREALFCYNEAL  577 (605)
Q Consensus       566 ~~~~~g~~~~A~  577 (605)
                      ++.....+.++.
T Consensus       154 ~~~~l~~~~~~~  165 (169)
T d1ihga1         154 VKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988877766654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.8e-10  Score=99.43  Aligned_cols=95  Identities=17%  Similarity=0.235  Sum_probs=85.7

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      +|..+..|..+|.+++..|++++|+..|+++++++|++..+|.++|.++..+|++++|+.+|+++++++|+++.++..++
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~  119 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  119 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHH--HccCHHHHHHH
Q 007401          565 TARE--ALFCYNEALQD  579 (605)
Q Consensus       565 ~~~~--~~g~~~~A~~~  579 (605)
                      .+..  ..+.+++|+..
T Consensus       120 ~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         120 ECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            7754  34446666544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-10  Score=91.09  Aligned_cols=83  Identities=14%  Similarity=0.001  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN-------VKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                      +++-++.+|.++++.|+|.+|+..|++|+++.|.+       ..+++++|.++.++|++++|++.|+++++++|++..++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35678899999999999999999999999986543       67999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 007401          595 LAEKRLRKLI  604 (605)
Q Consensus       595 ~~~~~~~~~~  604 (605)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998877654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.6e-10  Score=99.02  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+.++|.+|++.|+|++|+..++++|.++|+++.+++++|.+|..+|+|++|+.+|+++++++|+|+.+...++.++.
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HccCHHHHH
Q 007401          569 ALFCYNEAL  577 (605)
Q Consensus       569 ~~g~~~~A~  577 (605)
                      ..+++.+..
T Consensus       142 ~~~~~~~~e  150 (170)
T d1p5qa1         142 RIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877776554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=4.2e-10  Score=92.77  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       524 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      ..++.+|.++++.|++.+|+..|+++++.+|+++.+|+.+|.++.+.+++++|+.+|+++++++|++..++..++.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             hC
Q 007401          604 IG  605 (605)
Q Consensus       604 ~g  605 (605)
                      .|
T Consensus        97 ~g   98 (112)
T d1hxia_          97 EH   98 (112)
T ss_dssp             HH
T ss_pred             CC
Confidence            54

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=3.7e-10  Score=103.18  Aligned_cols=84  Identities=15%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007401          522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLR  601 (605)
Q Consensus       522 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  601 (605)
                      ++..+...|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhC
Q 007401          602 KLIG  605 (605)
Q Consensus       602 ~~~g  605 (605)
                      ..+|
T Consensus        83 ~~l~   86 (201)
T d2c2la1          83 LEME   86 (201)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            8765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.06  E-value=9.4e-10  Score=97.81  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ....+.++|.++++.++|++|+..|++++.++|++..+++++|.+|..+|+|++|+.+|+++++++|++..++..++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHccCHHH-HHHHHHHHHH
Q 007401          568 EALFCYNE-ALQDFKHAMV  585 (605)
Q Consensus       568 ~~~g~~~~-A~~~~~~al~  585 (605)
                      ...+++.+ ..+.|.+.++
T Consensus       143 ~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHh
Confidence            88776654 3444444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.03  E-value=6.1e-10  Score=97.37  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+.++|.+|++.|+|++|++.|++++.++|++..+|+++|.+|..+|++++|+.+|+++++++|+|..+...+..+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HccC
Q 007401          569 ALFC  572 (605)
Q Consensus       569 ~~g~  572 (605)
                      ++++
T Consensus       147 kl~~  150 (153)
T d2fbna1         147 KLKE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.7e-10  Score=94.88  Aligned_cols=81  Identities=14%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +..+.++|..++..++|++|+.+|+++++++|+++.+++++|.+|.++|+|++|+.+|+++++++|++...+..++.++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999988776666555544


Q ss_pred             h
Q 007401          603 L  603 (605)
Q Consensus       603 ~  603 (605)
                      .
T Consensus        84 ~   84 (128)
T d1elra_          84 R   84 (128)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=7.5e-09  Score=92.61  Aligned_cols=99  Identities=13%  Similarity=-0.001  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----------------------ATYYSNRAAAYLELGCFQQAE  543 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~  543 (605)
                      ....+.++..|..+...|++++|++.|.+++.+.+..                      ..++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3557889999999999999999999999999986543                      257899999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 007401          544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAM  584 (605)
Q Consensus       544 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  584 (605)
                      .+++++++++|.+..+|.+++.+|..+|++.+|+..|+++.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999983

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.7e-09  Score=112.18  Aligned_cols=117  Identities=10%  Similarity=-0.071  Sum_probs=85.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+.....+.++|..+.+.+++++|+..|++++..++.  .++.++|.++..+++|++|+.+|++|++++|++..+|+++|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4566788999999999999999999999999988764  78899999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          565 TAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       565 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      .++...|++.+|+.+|.+++..+|..+.++..+..++.+
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=1.9e-09  Score=93.22  Aligned_cols=92  Identities=14%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             ChHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHH
Q 007401          485 SIDASELLKEKGNAAFKG----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----------CFQQAE  543 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~  543 (605)
                      +|+.++.++.+|.++...          +++++|+..|+++++++|+++.+|+++|.+|..++           +|.+|+
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~  106 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  106 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence            577899999999999854          55689999999999999999999999999998765           479999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 007401          544 EDCSKTISLDKKNVKAYLRRGTAREALFCYNEA  576 (605)
Q Consensus       544 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  576 (605)
                      ++|+++++++|++..++..++.+....+.+.++
T Consensus       107 ~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         107 QFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887555555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.3e-09  Score=87.79  Aligned_cols=86  Identities=12%  Similarity=0.054  Sum_probs=75.7

Q ss_pred             ChHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 007401          485 SIDASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKA  559 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  559 (605)
                      .|...+.++++|+++++.+   ++++|+..|++++..+|.+  ..+++++|.+|+++|+|++|+++|+++++++|++..+
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            4567889999999998755   4567999999999988765  5689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 007401          560 YLRRGTAREAL  570 (605)
Q Consensus       560 ~~~la~~~~~~  570 (605)
                      ...+..+..+.
T Consensus       109 ~~l~~~I~~~~  119 (122)
T d1nzna_         109 KELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=1.9e-08  Score=99.65  Aligned_cols=121  Identities=15%  Similarity=0.138  Sum_probs=104.3

Q ss_pred             ChHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhc
Q 007401          485 SIDASELLKEKGNAAF----------KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISL  552 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~  552 (605)
                      +|+....|..++..+.          ..+++++|+.+|+++++.+|++..+|+.+|.++..+++  +++|+..+++++++
T Consensus        59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1          59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            4555566655555544          44558999999999999999999999999999988775  89999999999999


Q ss_pred             CCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          553 DKKNVKAY-LRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       553 ~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +|++..++ +..+.++...+++++|+++++++++++|++..++..++.++..+|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999886 467788999999999999999999999999999999999887764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=5.1e-08  Score=94.48  Aligned_cols=109  Identities=14%  Similarity=0.059  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC---
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKK---  555 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~---  555 (605)
                      +..+..|.++|.+|.+.|++++|+++|++++.+.++.      ..++.++|.+|.. .+++++|++.|++++++.+.   
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4456777888888888888888888888887765443      5667777777755 57888888888888776432   


Q ss_pred             ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 007401          556 ---NVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAAN  594 (605)
Q Consensus       556 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  594 (605)
                         ...++.++|.++..+|+|++|++.|++++...+.+....
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence               134677788888888888888888888888887775443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=4.8e-08  Score=94.62  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN--  556 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  556 (605)
                      -.+.++.|...|+.|...++|++|+++|++++.+.      ++.+..|.++|.+|.+++++++|+++|++++++.+++  
T Consensus        33 ~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~  112 (290)
T d1qqea_          33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ  112 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence            34668899999999999999999999999999873      2336789999999999999999999999999986544  


Q ss_pred             ----HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhhC
Q 007401          557 ----VKAYLRRGTAREA-LFCYNEALQDFKHAMVLEPQN------KAANLAEKRLRKLIG  605 (605)
Q Consensus       557 ----~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g  605 (605)
                          ..++.++|.++.. .|++++|++.|++++++.+.+      ..++..++.++..+|
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_         113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence                5688899998866 699999999999999875422      234566666665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.63  E-value=9.5e-08  Score=90.81  Aligned_cols=74  Identities=22%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007401          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA  569 (605)
Q Consensus       496 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  569 (605)
                      +..+++.|++++|+..|+++++.+|++..++.+++.+|...|++++|++.|+++++++|++..++..++.++..
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            45667788888888888888888888888888888888888888888888888888888765544444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=1.1e-06  Score=86.55  Aligned_cols=101  Identities=12%  Similarity=0.025  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 007401          502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC----------FQQAEEDCSKTISLDKKNVKAYLRRGTAREALF  571 (605)
Q Consensus       502 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  571 (605)
                      .+.+++|++.++++++.+|++..+|+.++.++..+++          +.+|+.+++++++.+|++..+|+.+|.++...+
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence            3445899999999999999999999999888766543          889999999999999999999999999998887


Q ss_pred             C--HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHH
Q 007401          572 C--YNEALQDFKHAMVLEPQNKAANLA-EKRLRK  602 (605)
Q Consensus       572 ~--~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~  602 (605)
                      +  +++|+..++++++++|++..++.. .+.++.
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~  155 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQ  155 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHH
Confidence            5  899999999999999999887654 444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=1.3e-06  Score=71.02  Aligned_cols=82  Identities=11%  Similarity=-0.072  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKNV-KAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       523 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ....+++|+++.+..   +.++|+..++.+++.+|.+. +.+|++|.+|+++|+|++|..+++++|+++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            677788888887654   35678888888888877654 68888888888888888888888888888888888877776


Q ss_pred             HHHHhh
Q 007401          599 RLRKLI  604 (605)
Q Consensus       599 ~~~~~~  604 (605)
                      .+..++
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=6.1e-07  Score=87.71  Aligned_cols=102  Identities=11%  Similarity=-0.014  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----  556 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----  556 (605)
                      ...++....+|..++..|++++|+..|+++++..|++     ..++..+|.+|..+|++++|++.|++++++.+..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            3456777888999999999999999999999999886     4578899999999999999999999999875432    


Q ss_pred             --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 007401          557 --VKAYLRRGTAREALFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       557 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  587 (605)
                        ...++.++.++...|++.+|...+.+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              4578889999999999999999999998764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=3.5e-06  Score=81.75  Aligned_cols=115  Identities=9%  Similarity=-0.160  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ...|...+....+.+++++|.+.|+++++..|.+...|...+..... .++.+.|...|+++++.+|+++..|..++..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            44677888888888888888888999888888888888888876544 57888888889998888888888888888888


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHh
Q 007401          568 EALFCYNEALQDFKHAMVLEPQNK----AANLAEKRLRKL  603 (605)
Q Consensus       568 ~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~  603 (605)
                      ...|++++|...|+++++..|.++    ..+.........
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~  253 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            888889888889999888776443    355555544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-06  Score=91.26  Aligned_cols=83  Identities=18%  Similarity=0.083  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTARE  568 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  568 (605)
                      ...+..+|..+...++|++|+.+|+++++++|++...|+++|.++...|++.+|+.+|.+|+..+|.++.++.+++..+.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hcc
Q 007401          569 ALF  571 (605)
Q Consensus       569 ~~g  571 (605)
                      +..
T Consensus       232 ~~~  234 (497)
T d1ya0a1         232 KAL  234 (497)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.30  E-value=1.3e-06  Score=75.64  Aligned_cols=71  Identities=14%  Similarity=0.021  Sum_probs=62.0

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-----------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  553 (605)
                      ....+..|.++|.+|.+.|+|++|++.|++++.+.+.           ...+++++|.+|..+|++++|+++|++++++.
T Consensus        51 ~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          51 AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3446788999999999999999999999999987432           24578999999999999999999999999986


Q ss_pred             CC
Q 007401          554 KK  555 (605)
Q Consensus       554 p~  555 (605)
                      |+
T Consensus       131 ~~  132 (156)
T d2hr2a1         131 EE  132 (156)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=4.4e-06  Score=67.79  Aligned_cols=81  Identities=9%  Similarity=0.035  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      .+..++.|+++.+..+   .++++..++++++.+|.+. ++++++|..|+++|+|++|.++++++++++|+|..+...+-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            6788999999987654   5789999999999998764 89999999999999999999999999999999999887766


Q ss_pred             HHHHH
Q 007401          565 TAREA  569 (605)
Q Consensus       565 ~~~~~  569 (605)
                      .+..+
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=4.3e-06  Score=81.42  Aligned_cols=104  Identities=17%  Similarity=-0.051  Sum_probs=90.9

Q ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q 007401          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL------DK  554 (605)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p  554 (605)
                      .+.....+...+..+...+++++|...|++++...+.+    ...+.++|.++...|++++|+..+++++..      .|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  288 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS  288 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh
Confidence            34567788889999999999999999999999876654    567788999999999999999999999854      35


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 007401          555 KNVKAYLRRGTAREALFCYNEALQDFKHAMVLEP  588 (605)
Q Consensus       555 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  588 (605)
                      ....++..+|.+|..+|++++|++.+++++++.+
T Consensus       289 ~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            5677999999999999999999999999998754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.2e-05  Score=77.88  Aligned_cols=108  Identities=8%  Similarity=-0.024  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHH
Q 007401          486 IDASELLKEKGNAAFK-GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNV----KAY  560 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~  560 (605)
                      +.....|...+..... .|+.+.|...|+++++..|++...|...+..+...|++++|...|+++++..|.++    ..|
T Consensus       165 ~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw  244 (308)
T d2onda1         165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  244 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred             CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            3445667777776544 68999999999999999999999999999999999999999999999999877543    467


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 007401          561 LRRGTAREALFCYNEALQDFKHAMVLEPQNKAA  593 (605)
Q Consensus       561 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  593 (605)
                      .....--...|+.+.+.+.++++.++.|+....
T Consensus       245 ~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~  277 (308)
T d2onda1         245 ARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence            777777778899999999999999999987654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.04  E-value=5.1e-06  Score=78.47  Aligned_cols=73  Identities=18%  Similarity=0.006  Sum_probs=66.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 007401          530 AAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALFCYNEALQDFKHAMVLEPQNKAANLAEKRLRK  602 (605)
Q Consensus       530 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  602 (605)
                      +.-++..|++++|++.|+++++.+|+|..++..++.+|...|++++|++.|+++++++|++...+..++.++.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3456678999999999999999999999999999999999999999999999999999999988887776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=2.2e-05  Score=69.31  Aligned_cols=83  Identities=13%  Similarity=-0.015  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHH
Q 007401          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKN----------------------VKAYLRRGTAREALFCYNEALQDF  580 (605)
Q Consensus       523 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~  580 (605)
                      ...+...|..+...|++++|++.|++|+.+.+.+                      ..++.+++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            5678889999999999999999999999997643                      257899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhhC
Q 007401          581 KHAMVLEPQNKAANLAEKRLRKLIG  605 (605)
Q Consensus       581 ~~al~~~p~~~~~~~~~~~~~~~~g  605 (605)
                      +++++++|.+..++..+..++..+|
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~G  115 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSD  115 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhc
Confidence            9999999999999999999887765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.91  E-value=9.8e-05  Score=69.20  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 007401          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRG  564 (605)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la  564 (605)
                      ++.++.+|..++.+++|++|+++|+++.+.  .+..+++++|.+|..    ..++.+|..+++++.+.+  ++.+.+.+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            568999999999999999999999999875  688999999999998    678999999999987664  788899999


Q ss_pred             HHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 007401          565 TAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEK  598 (605)
Q Consensus       565 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~  598 (605)
                      ..+..    ..+.++|...++++.+..+  ..+...++
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~  113 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLG  113 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhc
Confidence            88865    5688999999999987654  34444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.00047  Score=57.13  Aligned_cols=90  Identities=20%  Similarity=0.118  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 007401          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAYLRRGTAR  567 (605)
Q Consensus       492 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  567 (605)
                      ++.++.  ....++++|+.+|+++.+.  .++.+.+.+|..|..    ..++.+|+++|+++.+.  .++.+.+++|.+|
T Consensus        28 ~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          28 CLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             HHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             hhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHH
Confidence            444443  3467899999999999875  688999999999986    46799999999999876  5799999999999


Q ss_pred             HH----ccCHHHHHHHHHHHHHhC
Q 007401          568 EA----LFCYNEALQDFKHAMVLE  587 (605)
Q Consensus       568 ~~----~g~~~~A~~~~~~al~~~  587 (605)
                      ..    ..++++|+++|+++.++.
T Consensus       102 ~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         102 YAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HcCCccCCCHHHHHHHHHHHHHCC
Confidence            87    578999999999999864

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.43  E-value=0.00045  Score=64.42  Aligned_cols=105  Identities=21%  Similarity=0.145  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 007401          489 SELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKNVKAY  560 (605)
Q Consensus       489 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  560 (605)
                      ...+..+|..+..    ..+...+..+++++.+  ..++.+++++|.+|..    ..++++|+.+|+++.+.  +++.++
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~  217 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC  217 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHH
Confidence            5667888988886    5678888999998876  4689999999999987    67899999999999887  479999


Q ss_pred             HHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 007401          561 LRRGTAREA----LFCYNEALQDFKHAMVLEPQNKAANLAEKR  599 (605)
Q Consensus       561 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  599 (605)
                      +++|.+|..    ..++++|+++|+++....  +..+...+..
T Consensus       218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~  258 (265)
T d1ouva_         218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQ  258 (265)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHH
Confidence            999999986    458999999999999875  4445544443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.29  E-value=0.00092  Score=55.24  Aligned_cols=93  Identities=20%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 007401          503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREA----LFCYNEALQ  578 (605)
Q Consensus       503 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  578 (605)
                      .|+++|+++|+++.+..  ++.++++++..  ...++++|++.|+++.+.  +++.+.+.+|..|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSN--SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            48899999999999874  55666677643  457899999999999876  689999999999986    568999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHh
Q 007401          579 DFKHAMVLEPQNKAANLAEKRLRKL  603 (605)
Q Consensus       579 ~~~~al~~~p~~~~~~~~~~~~~~~  603 (605)
                      +|+++.+.  .++.+...++.++..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999875  578888888877653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.20  E-value=1  Score=31.97  Aligned_cols=32  Identities=6%  Similarity=0.226  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 007401          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIK  517 (605)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~  517 (605)
                      -+.+..+-..++.+.+.|+|++||++++++..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35677788889999999999999998887764