Citrus Sinensis ID: 007420

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----

MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

ccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEccHHHHHHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEHHccccccccEEEcHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHEccHHHHcHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHccccccEEEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEcccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHcccccccccccHcHEEEEccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MITLADFYHVMTAMVPLYVAMILAYGSvkwwkiftpdqcsgINRFVALFAVPLlsfhfissndpykmNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSvstlpntlvmgipllkgmygefsgSLMVQIVVLQCIIWYTLMLFMFEYRGARLLiseqfpdtagsivsihvdsdimsldgrqpletdaeikedgKLHVTvrksnasrsdifsrrsqglssttprpsnltnaEIYSlqssrnptprgssfnhadfysmmaggrssnfgatdvyglsatsrgptprpsnyedeannanksrfhhypapnpgmfsptnnntrvnASANKKAIngqaqqkgedgagagagarDLHMFVwsssaspvsdvfgghdynnndhkevrlavspqggkgeggggheeymeredfsfgnrrglesnnnegekvgdekpkampptsVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAalpqgivpFVFAkeynvhpdilsTGVIFGMLIALPITLVYYILLGL

MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLEtdaeikedgklhvtvrksnasrsdifsrrsqglssttprpsnltNAEIYSlqssrnptprgsSFNHADFYSMMAGGRSSNFGATDVYGLSAtsrgptprpsnYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEvrlavspqggkgegggghEEYMEREDFsfgnrrglesnnnegekvgdekpkampptsVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINgqaqqkgedgagagagaRDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQggkgeggggheeymereDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

**TLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDI******************************************************************************************************************************************************************************LHMFVWS*******************************************************************************VMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILL**

*ITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLL***************************************GKLHV*******************************************************F**************************************************************************************************************************************************************************************MTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTV***********************RPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSA*************DEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAI**************GAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSP**********HEEYMEREDFSFGNRRGLESN*************AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKS*******************PRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPT******************H*********************************************ARDLHMFVWSSSA*P*SDVFGGHDYNNNDHKEVRLAVSP********************************************AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		604	2.2.26 [Sep-21-2011]
Q67UL3		592	Probable auxin efflux car	yes	no	0.940	0.959	0.737	0.0
Q5SMQ9		595	Auxin efflux carrier comp	no	no	0.951	0.966	0.733	0.0
Q9C6B8		622	Auxin efflux carrier comp	yes	no	0.965	0.937	0.724	0.0
Q8RWZ6		616	Auxin efflux carrier comp	no	no	0.965	0.946	0.646	0.0
Q9S7Z8		640	Auxin efflux carrier comp	no	no	0.980	0.925	0.634	0.0
Q940Y5		619	Auxin efflux carrier comp	no	no	0.981	0.957	0.641	0.0
Q9LU77		647	Auxin efflux carrier comp	no	no	0.978	0.913	0.584	0.0
Q5VP70		618	Probable auxin efflux car	no	no	0.920	0.899	0.591	0.0
Q651V6		630	Probable auxin efflux car	no	no	0.955	0.915	0.566	0.0
P0C0X5		554	Probable auxin efflux car	no	no	0.882	0.962	0.579	0.0

>sp\|Q67UL3\|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1	Back alignment and function desciption

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/628 (73%), Positives = 508/628 (80%), Gaps = 60/628 (9%)

Query: 1   MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
           MIT ADFYHVMTAMVPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS
Sbjct: 1   MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  SNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPL 120
           +N+PY MNLRFIAADTLQK+IVL +L +WS LS+RG LEWTITLFS+STLPNTLVMGIPL
Sbjct: 61  TNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPL 120

Query: 121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSD 180
           LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+EQFPDTAG+I SI VD+D
Sbjct: 121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDAD 180

Query: 181 IMSLDGRQPL-ETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEI 239
           ++SLDGR+ + ET+AE+KEDGK+HVTVR+SNASRSD++SRRS G SSTTPRPSNLTNAEI
Sbjct: 181 VVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMGFSSTTPRPSNLTNAEI 240

Query: 240 YSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEAN 299
           YSLQSSRNPTPRGSSFNH DFYSM+  GRSSNF A D +G+     G TPRPSNYE++A 
Sbjct: 241 YSLQSSRNPTPRGSSFNHTDFYSMV--GRSSNFAAGDAFGVRT---GATPRPSNYEEDAA 295

Query: 300 NANK--SRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLH 357
             NK  S++  Y                  A+  K       Q KGEDG       +DLH
Sbjct: 296 APNKAGSKYGQY-----------PAPNPAMAAPPKPKKAANGQAKGEDG-------KDLH 337

Query: 358 MFVWSSSASPVSDVFG-GHDYNNNDH-KEVRLAV-SPQGGKGEGGGGHEEYMEREDFSFG 414
           MFVWSSSASPVSDVFG G +YN+    KEVR+AV SP+   G         +ER+DFSFG
Sbjct: 338 MFVWSSSASPVSDVFGNGAEYNDAAAVKEVRMAVASPRKADG---------VERDDFSFG 388

Query: 415 NRRGLESNNNEGEKVGDEK------------------PKAMPPTSVMTRLILIMVWRKLI 456
           N RG+   + E    GDEK                  P AMPPTSVMTRLILIMVWRKLI
Sbjct: 389 N-RGVAERDAEA---GDEKSVAAAVSGEHGKPGLTPAPTAMPPTSVMTRLILIMVWRKLI 444

Query: 457 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIA 516
           RNPNTYSSLIGL+WSLV FRWN +MPAI+ KSISILSDAGLGMAMFSLGLFMALQPRIIA
Sbjct: 445 RNPNTYSSLIGLIWSLVCFRWNFEMPAIILKSISILSDAGLGMAMFSLGLFMALQPRIIA 504

Query: 517 CGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVH 576
           CGN +A F+MAVRFLTGPAVMAAASIAVGLRG LLHVAIVQAALPQGIVPFVFAKEY+VH
Sbjct: 505 CGNKVATFAMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVH 564

Query: 577 PDILSTGVIFGMLIALPITLVYYILLGL 604
           PDILST VIFGMLIALPITLVYYILLGL
Sbjct: 565 PDILSTAVIFGMLIALPITLVYYILLGL 592

May act as a component of the auxin efflux carrier.
Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q5SMQ9\|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1	Back alignment and function description

>sp\|Q9C6B8\|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1	Back alignment and function description

>sp\|Q8RWZ6\|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1	Back alignment and function description

>sp\|Q9S7Z8\|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1	Back alignment and function description

>sp\|Q940Y5\|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2	Back alignment and function description

>sp\|Q9LU77\|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2	Back alignment and function description

>sp\|Q5VP70\|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1	Back alignment and function description

>sp\|Q651V6\|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1	Back alignment and function description

>sp\|P0C0X5\|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		604
225456149		604	PREDICTED: probable auxin efflux carrier	0.983	0.983	0.843	0.0
224135561		614	auxin efflux carrier component [Populus	0.985	0.969	0.836	0.0
359491030		596	PREDICTED: probable auxin efflux carrier	0.971	0.984	0.840	0.0
224118654		609	auxin efflux carrier component [Populus	0.983	0.975	0.844	0.0
10441744		614	PIN1-like auxin transport protein [Popul	0.985	0.969	0.833	0.0
225456151		606	PREDICTED: probable auxin efflux carrier	0.983	0.980	0.839	0.0
33339150		607	auxin efflux carrier [Momordica charanti	0.980	0.975	0.841	0.0
33339148		607	AEC1 [Momordica charantia]	0.980	0.975	0.836	0.0
89511766		606	auxin efflux carrier [Lupinus albus]	0.981	0.978	0.818	0.0
449439457		617	PREDICTED: auxin efflux carrier componen	0.973	0.952	0.826	0.0

>gi\|225456149\|ref\|XP_002282220.1\| PREDICTED: probable auxin efflux carrier component 1c isoform 1 [Vitis vinifera] gi\|147816248\|emb\|CAN64182.1\| hypothetical protein VITISV_007800 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/614 (84%), Positives = 554/614 (90%), Gaps = 20/614 (3%)

Query: 1   MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
           MI+L DFYHVMTA+VPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS
Sbjct: 1   MISLLDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  SNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPL 120
           +NDPY MN RFIAADTLQKIIVL VLA+WS +SKRGCLEWTITLFS+STLPNTLVMGIPL
Sbjct: 61  TNDPYAMNFRFIAADTLQKIIVLAVLAVWSNVSKRGCLEWTITLFSLSTLPNTLVMGIPL 120

Query: 121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSD 180
           LKGMYGE+SGSLMVQIVVLQCIIWYTLMLF+FEYRGA++LISEQFPDTAGSIVSIHVDSD
Sbjct: 121 LKGMYGEYSGSLMVQIVVLQCIIWYTLMLFLFEYRGAKMLISEQFPDTAGSIVSIHVDSD 180

Query: 181 IMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIY 240
           IMSLDGRQ LET+AEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIY
Sbjct: 181 IMSLDGRQALETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIY 240

Query: 241 SLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANN 300
           SLQSSRNPTPRGSSFNH DFYSM+AGGR+SNFG++DVYGL+ TSRGPTPRPSNYE++ NN
Sbjct: 241 SLQSSRNPTPRGSSFNHTDFYSMVAGGRNSNFGSSDVYGLT-TSRGPTPRPSNYEEDGNN 299

Query: 301 ANKSRFH-------HYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGA 353
            NK RFH       HYPAPNPGMFSPT +    +A+A KK  NGQAQQK ++      G 
Sbjct: 300 NNKIRFHYHAQGGNHYPAPNPGMFSPTGSKNVASAAAAKKP-NGQAQQKPDE------GT 352

Query: 354 RDLHMFVWSSSASPVSDVFGGHDYNNNDHK-EVRLAVSPQGGKGEGG-GGHEEYMEREDF 411
           RDLHMFVWSSSASPVSDVFGGH+Y  ND   + R+AVSP  GK EG     E+Y+ER+DF
Sbjct: 353 RDLHMFVWSSSASPVSDVFGGHEYGANDQNVKERVAVSP--GKVEGHRENQEDYLERDDF 410

Query: 412 SFGNR-RGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVW 470
           SFGNR    E NN+EGEKVGD K KAMPP SVMTRLILIMVWRKLIRNPNTYSSLIGL+W
Sbjct: 411 SFGNRVLAQEMNNHEGEKVGDGKAKAMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIW 470

Query: 471 SLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRF 530
           SLVSF+W VQMPAI+ KSI+ILSDAGLGMAMFSLGLFMALQPRIIACGNSIA F+MAVRF
Sbjct: 471 SLVSFKWKVQMPAIIEKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNSIAVFAMAVRF 530

Query: 531 LTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLI 590
           LTGPAVMAAASIAVGLRGVLL VAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLI
Sbjct: 531 LTGPAVMAAASIAVGLRGVLLRVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLI 590

Query: 591 ALPITLVYYILLGL 604
           ALPITLVYYILLG+
Sbjct: 591 ALPITLVYYILLGI 604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224135561\|ref\|XP_002322104.1\| auxin efflux carrier component [Populus trichocarpa] gi\|222869100\|gb\|EEF06231.1\| auxin efflux carrier component [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359491030\|ref\|XP_003634207.1\| PREDICTED: probable auxin efflux carrier component 1c [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224118654\|ref\|XP_002317874.1\| auxin efflux carrier component [Populus trichocarpa] gi\|222858547\|gb\|EEE96094.1\| auxin efflux carrier component [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|10441744\|gb\|AAG17172.1\|AF190881_1 PIN1-like auxin transport protein [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

>gi\|225456151\|ref\|XP_002282246.1\| PREDICTED: probable auxin efflux carrier component 1c isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|33339150\|gb\|AAQ14257.1\|AF247004_1 auxin efflux carrier [Momordica charantia]	Back alignment and taxonomy information

>gi\|33339148\|gb\|AAQ14256.1\|AF246995_1 AEC1 [Momordica charantia]	Back alignment and taxonomy information

>gi\|89511766\|emb\|CAJ84441.1\| auxin efflux carrier [Lupinus albus]	Back alignment and taxonomy information

>gi\|449439457\|ref\|XP_004137502.1\| PREDICTED: auxin efflux carrier component 1-like [Cucumis sativus] gi\|449503101\|ref\|XP_004161834.1\| PREDICTED: auxin efflux carrier component 1-like [Cucumis sativus] gi\|25956262\|dbj\|BAC41319.1\| PIN1-like auxin transport protein [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		604
UNIPROTKB\|Q5SMQ9		595	PIN1 "Auxin efflux carrier com	0.958	0.973	0.709	1.5e-218
TAIR\|locus:2013975		640	PIN3 "AT1G70940" [Arabidopsis	0.630	0.595	0.603	9.4e-200
TAIR\|locus:2038781		616	PIN4 "AT2G01420" [Arabidopsis	0.963	0.944	0.641	4.8e-197
TAIR\|locus:2201225		619	PIN7 "AT1G23080" [Arabidopsis	0.981	0.957	0.628	7e-196
TAIR\|locus:2035037		622	PIN1 "AT1G73590" [Arabidopsis	0.634	0.615	0.709	8.6e-143
TAIR\|locus:2025312		570	PIN6 "AT1G77110" [Arabidopsis	0.493	0.522	0.534	1.2e-140
TAIR\|locus:2175559		647	EIR1 "AT5G57090" [Arabidopsis	0.473	0.442	0.686	9.8e-103
TAIR\|locus:2147835		367	PIN8 "AT5G15100" [Arabidopsis	0.306	0.504	0.577	7.7e-97
TAIR\|locus:2171392		351	PIN5 "AT5G16530" [Arabidopsis	0.259	0.447	0.554	2.4e-91
TIGR_CMR\|SO_3461		319	SO_3461 "transporter, putative	0.236	0.448	0.203	3.2e-06

UNIPROTKB\|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
 Identities = 440/620 (70%), Positives = 481/620 (77%)

Query:     1 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
             MIT ADFYHVMTAMVPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query:    61 SNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPL 120
             +N+PY MNLRFIAADTLQK++VL +L  WS LS+RG LEWTITLFS+STLPNTLVMGIPL
Sbjct:    61 TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPL 120

Query:   121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSD 180
             LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+EQFPDTA +I SI VD D
Sbjct:   121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPD 180

Query:   181 IMSLDGRQP-LETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEI 239
             ++SLDGR+  +ET+ E+KEDG++HVTVR+SNASRSDI+SRRS G SSTTPRPSNLTNAEI
Sbjct:   181 VVSLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMGFSSTTPRPSNLTNAEI 240

Query:   240 YSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEAN 299
             YSLQSSRNPTPRGSSFNH DFYSM+  GRSSNFGA D +G+     G TPRPSNYED+A+
Sbjct:   241 YSLQSSRNPTPRGSSFNHTDFYSMV--GRSSNFGAADAFGVRT---GATPRPSNYEDDAS 295

Query:   300 N-------ANKSRFH-HYPAPNPGMFSPTNNNTRVNASANKKAINXXXXXXXXXXXXXXX 351
                     +N +    HYPAPNP + S           A K A N               
Sbjct:   296 KPKYPLPASNAAPMAGHYPAPNPAVSSAPKG-------AKKAATNGQAKG---------- 338

Query:   352 XXRDLHMFVWSSSASPVSDVFGGH--DYNN-----NDHKEVRLAVSPQXXXXXXXXXXXX 404
                DLHMFVWSSSASPVSDVFGG   DYN+     +  K                     
Sbjct:   339 --EDLHMFVWSSSASPVSDVFGGGAPDYNDAAAVKSPRKMDGAKDREDYVERDDFSFGNR 396

Query:   405 XXXXXDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSS 464
                  D   G+ +   +   +  K     P AMPPTSVMTRLILIMVWRKLIRNPNTYSS
Sbjct:   397 GVMDRDAEAGDEKAAAAAGADPSKAM-AAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSS 455

Query:   465 LIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAF 524
             LIGL+WSLV FRWN +MPAIV KSISILSDAGLGMAMFSLGLFMALQP IIACGN +A +
Sbjct:   456 LIGLIWSLVCFRWNFEMPAIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVATY 515

Query:   525 SMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGV 584
             +MAVRFL GPAVMAAAS AVGLRG LLHVAIVQAALPQGIVPFVFAKEY+VHP ILST V
Sbjct:   516 AMAVRFLAGPAVMAAASFAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTAV 575

Query:   585 IFGMLIALPITLVYYILLGL 604
             IFGMLIALPITLVYYILLGL
Sbjct:   576 IFGMLIALPITLVYYILLGL 595

GO:0005215 "transporter activity" evidence=IMP

GO:0006810 "transport" evidence=IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009921 "auxin efflux carrier complex" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0048830 "adventitious root development" evidence=IMP

TAIR\|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_3461 SO_3461 "transporter, putative" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67UL3	PIN1C_ORYSJ	No assigned EC number	0.7372	0.9403	0.9594	yes	no
Q5SMQ9	PIN1_ORYSJ	No assigned EC number	0.7339	0.9519	0.9663	no	no
Q9C6B8	PINI_ARATH	No assigned EC number	0.7247	0.9652	0.9372	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017824001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (604 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		604
TIGR00946		321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	2e-61
pfam03547		321	pfam03547, Mem_trans, Membrane transport protein	1e-59
pfam03547		321	pfam03547, Mem_trans, Membrane transport protein	1e-56
TIGR00946		321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	2e-49
COG0679		311	COG0679, COG0679, Predicted permeases [General fun	8e-17
COG0679		311	COG0679, COG0679, Predicted permeases [General fun	3e-10

>gnl\|CDD\|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

 Score =  206 bits (526), Expect = 2e-61
 Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 6/175 (3%)

Query: 429 VGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKS 488
           +  E       +   TRL+LI VW+KLI+ P  ++ L+ ++ SLV F+    MP ++ KS
Sbjct: 153 LVSEDGAGGEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFK----MPGLILKS 208

Query: 489 ISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRG 548
           ISILS A   MA+FSLG  +AL PR I  G   A  ++ VRFL  PAVMA  S  +GLRG
Sbjct: 209 ISILSGATTPMALFSLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRG 266

Query: 549 VLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 603
           + L VAI+QAALP G V  V A EY V  ++ ST V    +++L    ++ ILLG
Sbjct: 267 LELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321

[Transport and binding proteins, Other]. Length = 321

>gnl\|CDD\|217608 pfam03547, Mem_trans, Membrane transport protein	Back alignment and domain information

>gnl\|CDD\|217608 pfam03547, Mem_trans, Membrane transport protein	Back alignment and domain information

>gnl\|CDD\|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>gnl\|CDD\|223751 COG0679, COG0679, Predicted permeases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223751 COG0679, COG0679, Predicted permeases [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		604
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	100.0
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PRK09903		314	putative transporter YfdV; Provisional	100.0
COG0679		311	Predicted permeases [General function prediction o	100.0
KOG2722		408	consensus Predicted membrane protein [Function unk	99.73
TIGR00841		286	bass bile acid transporter. Functionally character	99.0
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	98.62
COG0385		319	Predicted Na+-dependent transporter [General funct	98.57
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	98.49
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	97.81
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.26
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	96.93
PF04172		215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.58
PRK10711		231	hypothetical protein; Provisional	95.52
PRK04288		232	antiholin-like protein LrgB; Provisional	95.29
TIGR00841		286	bass bile acid transporter. Functionally character	95.05
TIGR00659		226	conserved hypothetical protein TIGR00659. Members	94.89
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	94.84
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	94.8
COG3329		372	Predicted permease [General function prediction on	92.61
COG2855		334	Predicted membrane protein [Function unknown]	92.17
PRK03659		601	glutathione-regulated potassium-efflux system prot	91.94
PRK03562		621	glutathione-regulated potassium-efflux system prot	91.44
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	90.01
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	89.33
TIGR00698		335	conserved hypothetical integral membrane protein.	88.87
PRK10669		558	putative cation:proton antiport protein; Provision	88.2
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	88.11
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	87.55
COG5505		384	Predicted integral membrane protein [Function unkn	86.16
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	84.95
KOG2718		371	consensus Na+-bile acid cotransporter [Inorganic i	82.24
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	81.9
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	81.65
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	81.23
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	80.98

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

Probab=100.00  E-value=1.3e-45  Score=385.92  Aligned_cols=376  Identities=31%  Similarity=0.473  Sum_probs=303.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccccChhHHHHHHHHHHHHHhHHHHHHHhhcCC-CCCc-cHHHHHHHH-HHHHHHHHHH
Q 007420           10 VMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSND-PYKM-NLRFIAADT-LQKIIVLVVL   86 (604)
Q Consensus        10 ILsiilPIFlLI~LGyla~R~rg~~s~~~~~~LnrFVf~~ALPALLF~~IA~~d-l~~l-~~~fl~ay~-Lg~livfll~   86 (604)
                      +++.++|+|+++++||+++|+ |++++++.+.+|++|+++++|||+|..+++.+ .+++ ++.++..+. +..++.++++
T Consensus         2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999995 99999999999999999999999999999975 4445 665555444 3444445555


Q ss_pred             HHHHHHhhcCCcccceeeeee-ccCCccccchHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC
Q 007420           87 AIWSKLSKRGCLEWTITLFSV-STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQF  165 (604)
Q Consensus        87 ~llar~~~r~~~~~~aaV~gl-asfsNtgfIGiPIl~alfG~~a~~~valiv~v~~lIl~pl~lvLmE~~~~~~~~~~~~  165 (604)
                      +++.|+++. ++++ .+++.+ ++|+|++++|+|++.++||+++..++.++..++++++++++..++|.++++....++.
T Consensus        81 ~~~~~~~~~-~~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   81 FLLSRLFRL-PKEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHhcCC-Cccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            555554444 3333 466777 7999999999999999999999999999999999999999999999987776556666


Q ss_pred             CCCcCccceeeccccccccCCCCCccchhhhccCCceEEEEeecCCCcchhhhcccCCCCCCCCCCCCCCccccccccCC
Q 007420          166 PDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSS  245 (604)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (604)
                      +++.++......|++.+..+++++.++|.++++|+..|.+++..+.++.+..+        .+|++++            
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------------  218 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS--------TSPSPSN------------  218 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc--------cCCcccc------------
Confidence            66666777888888999999999999999999999888776655554433331        0000000            


Q ss_pred             CCCCCCCCCCCcchhhhhhcCCCCCCCCCccccccccCCCCCCCCCCCchhhhhhccccCCCCCCCCCCCCCCCCCCCcc
Q 007420          246 RNPTPRGSSFNHADFYSMMAGGRSSNFGATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTR  325 (604)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (604)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (385)
T PF03547_consen  219 --------------------------------------------------------------------------------  218 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhhhhhcccccccCCCCCCCCCCcccccceeccCCCCCCcccccCCCCCCCcchhhhhccCCCCCCCCCCCCCccc
Q 007420          326 VNASANKKAINGQAQQKGEDGAGAGAGARDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEY  405 (604)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (604)
                                                                      .+       .                  +++ 
T Consensus       219 ------------------------------------------------~~-------~------------------~~~-  224 (385)
T PF03547_consen  219 ------------------------------------------------ST-------G------------------AEQ-  224 (385)
T ss_pred             ------------------------------------------------cc-------h------------------hhh-
Confidence                                                            00       0                  000 


Q ss_pred             ccccccccCccccCcCCCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCc---
Q 007420          406 MEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMP---  482 (604)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP---  482 (604)
                                                 +      .+.+.+...++.+++.++||+++++++|+++++.    ++..|   
T Consensus       225 ---------------------------~------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~----~~~~~~~~  267 (385)
T PF03547_consen  225 ---------------------------K------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLI----PPLRPLFF  267 (385)
T ss_pred             ---------------------------h------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----HHhcccch
Confidence                                       0      0013445667888899999999999999999999    66555   


Q ss_pred             -HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccc
Q 007420          483 -AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALP  561 (604)
Q Consensus       483 -~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~~~~~~k~vl~iv~iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmP  561 (604)
                       +++.++++++|++++|++||++|+.|+..+......++.....+++|++++|++++++++++++++....++++++++|
T Consensus       268 ~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P  347 (385)
T PF03547_consen  268 PSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMP  347 (385)
T ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCC
Confidence             9999999999999999999999999998653323455666678999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007420          562 QGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY  599 (604)
Q Consensus       562 tAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l~  599 (604)
                      +|++.+++|++||.+++.+++++++||+++++++.+|+
T Consensus       348 ~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  348 TAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             chHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999988777663

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PRK09903 putative transporter YfdV; Provisional	Back alignment and domain information

>COG0679 Predicted permeases [General function prediction only]	Back alignment and domain information

>KOG2722 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []	Back alignment and domain information

>PRK10711 hypothetical protein; Provisional	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR00659 conserved hypothetical protein TIGR00659	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>COG3329 Predicted permease [General function prediction only]	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG5505 Predicted integral membrane protein [Function unknown]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		604
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 53/411 (12%), Positives = 116/411 (28%), Gaps = 143/411 (34%)

Query: 146 TLMLF-MFEYRGARLLISEQFPDTA-----GSIVS-IHVDSDIMSLDGRQP-LETDAEIK 197
           TL LF     +     + ++F +         ++S I  +        RQP + T   I+
Sbjct: 64  TLRLFWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQ-------RQPSMMTRMYIE 114

Query: 198 EDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRP---SNLTNAEIYSLQSSRNPTPRGSS 254
           +  +L+   +        +F++ +        R      L  A +  L+ ++N    G  
Sbjct: 115 QRDRLYNDNQ--------VFAKYN------VSRLQPYLKLRQA-LLELRPAKNVLIDG-- 157

Query: 255 FNHADFYSMMAG-GRSS---------------NFGATDVYGLSATSRGPTPRPSNYEDEA 298
                    + G G++                +F    ++ L+  +            E 
Sbjct: 158 ---------VLGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCN--------SPET 197

Query: 299 NNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGARDLHM 358
                 +  +   PN    S  ++N ++   + +  +    + K             L +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--------YENCLLV 249

Query: 359 F--VWSSSASPVSDVFGGH--------DYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMER 408
              V ++      + F                  K+V   +S           H      
Sbjct: 250 LLNVQNAK---AWNAFNLSCKILLTTRF------KQVTDFLSAATTT------HISLDHH 294

Query: 409 EDFSFGNRRGLESNNNEG--EKVGDEKPKAMPPTSVMTRLILI-MVWRKLIRNPNTY--- 462
                     L  +  +    K  D +P+ +P   + T    + ++   +     T+   
Sbjct: 295 SM-------TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 463 -------------SSLIGLV--------WSLVSFRWNVQMPAIVAKSISIL 492
                        SSL  L           L  F  +  +P I+   +S++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLI 395

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		604
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	99.12
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	94.6

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

Probab=99.12  E-value=1.1e-09  Score=113.99  Aligned_cols=141  Identities=13%  Similarity=0.059  Sum_probs=114.9

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhh-hhcchhHHHHHHH
Q 007420          449 IMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRI-IACGNSIAAFSMA  527 (604)
Q Consensus       449 ~~vlkklLkNPiIIAiILGLilsll~~~~gI~LP~~L~~~L~~LG~aaiPLALf~IG~sLa~~~~~-~~~~~k~vl~iv~  527 (604)
                      +++. +.+.++..+.++++.++.++       .|+... .++..-..+.++.||..|+.+...+.. ..++++......+
T Consensus        10 ~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~   80 (332)
T 3zux_A           10 SKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVI   80 (332)
T ss_dssp             HHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHH
Confidence            3433 45678889999999888887       454322 233444568899999999999987632 1246677778899


Q ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 007420          528 VRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY  598 (604)
Q Consensus       528 iKLIV~PLLa~ll~~lLgLd~~~~~VlVL~AAmPtAv~s~IlA~~YG~d~elAAs~VllSTLLSLpl~i~l  598 (604)
                      .+++++|++++.+++++++++.....+++++++|+++.+++++..+|+|.+++...+.+||++++.+++.+
T Consensus        81 ~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~  151 (332)
T 3zux_A           81 AQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAI  151 (332)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999995444433

PyMOL of 3zux

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00