Citrus Sinensis ID: 007424
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 604 | 2.2.26 [Sep-21-2011] | |||||||
| F4I6M4 | 821 | Microtubule-associated pr | no | no | 0.816 | 0.600 | 0.286 | 7e-45 | |
| Q9T041 | 864 | Microtubule-associated pr | no | no | 0.801 | 0.560 | 0.294 | 2e-44 |
| >sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 152/530 (28%), Positives = 265/530 (50%), Gaps = 37/530 (6%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKE 62
LK + L++L DRDTY A +L+ I +V P +LP L C+ ++S K V++E
Sbjct: 37 LKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKRE 96
Query: 63 CIHVIATLSNSH-NLS-PYITKIINSITRNFRDKNSALQATCISTVSSLSPR-------- 112
I +++ L S+ +LS + KII+ I + +D ++ ++ C + SLS +
Sbjct: 97 SIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEVE 156
Query: 113 ----VGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168
VG+S K L +A+ EQ+ + Q GAA+C+ ID+A +P ++ R+
Sbjct: 157 NGNYVGSSLVGLFAKPLFEAM-AEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRIS 215
Query: 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228
+LL S + KA+ L VVGS+ GA+ L+ L+ + L +W RKAAA+ L
Sbjct: 216 KLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLIS 275
Query: 229 LAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLD 288
LAV V + L E+ RFDK+K VRE +++ + WK + E + Q
Sbjct: 276 LAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQKDV 335
Query: 289 PSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRG---FLKKVSP 345
S++ +R T+S S GL ++ S S+ S RK+ K ++P
Sbjct: 336 SSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSISKAVLILRKKAPRLTGKDLNP 395
Query: 346 AVLHKVDQKKPSDWRDQISAP------SGASLVDAHEDGT-VLKIRNNENTKLPKPETKR 398
K++++ D ++ P S ++ D + T VL+ R+N + TK+
Sbjct: 396 EFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTSVLRSRSNGLCRTAGVHTKQ 455
Query: 399 ALF-NWSSDDKVHKLRSG--SRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLV 455
F +++ + V + +G SR+ ++ + E +D +EN + ++ QL+
Sbjct: 456 RHFGDFAREKWVDERMNGGESRLRAFDGDHTEVIQADTSENRG-------NWPPLQRQLL 508
Query: 456 QIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTG 505
+E+QQ+ ++++LQ F+G S GM SLE RV GLE ++E+S ++++ +G
Sbjct: 509 HLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEMSREMSIQSG 558
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Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 160/543 (29%), Positives = 267/543 (49%), Gaps = 59/543 (10%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK + ++KL+DRDTY A ++L+ ++ P LP FL+C+ + S KP V+KEC+
Sbjct: 42 LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECL 101
Query: 65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS----------PR 112
H+++ + + H + + ++TKII I + +D +S ++ C T+ +LS
Sbjct: 102 HLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTN 161
Query: 113 VGASAFVTML--KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170
G+++ L K L +A+ EQ+ Q GA++C+A +++A P ++ R+ +L
Sbjct: 162 TGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKL 220
Query: 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230
L + F AKA+ L VV S+ GA+ L+ L+ + L S DW RKAAAE L LA
Sbjct: 221 LSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALA 280
Query: 231 VVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPS 290
+ E + + E+ RFDK+K VRE + + ++ WK++ + + L S
Sbjct: 281 SHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSAS 340
Query: 291 KEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSS------FPTTARKRGFLKKVS 344
++ GS++ E RS+ +L K+ + PDS+ FP A G LKK +
Sbjct: 341 EQLGSEKN--GEKRSNLA---DLMKKEASDGSTLSPDSASKGKGCFPEKA--VGLLKKKA 393
Query: 345 PAVLHKVD------QKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKR 398
P VL D Q+ ++ P D E G L +
Sbjct: 394 P-VLSDKDFNPEFFQRLERRQSVEVVVPRRCKNNDEEESGL---------DDLNAMGSSN 443
Query: 399 ALFNWSSDDKVHKLR---SGSRVTPYNEESHEFTVSDNTENLH--IKHKDCE-------- 445
L N +DDK K R +GS+ ++ T H + + D +
Sbjct: 444 RLKNTQADDKQVKGRFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSN 503
Query: 446 --DLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVS 503
+ S I+ QL+Q+E+QQ++L+++LQ FIG S M +LE RV GLE +++++ DL++S
Sbjct: 504 RGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSIS 563
Query: 504 TGR 506
+GR
Sbjct: 564 SGR 566
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Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 604 | ||||||
| 255540821 | 613 | Microtubule-associated protein TORTIFOLI | 0.980 | 0.965 | 0.582 | 1e-178 | |
| 449441039 | 628 | PREDICTED: microtubule-associated protei | 0.991 | 0.953 | 0.541 | 1e-171 | |
| 225457188 | 638 | PREDICTED: microtubule-associated protei | 0.986 | 0.934 | 0.536 | 1e-169 | |
| 356516728 | 623 | PREDICTED: microtubule-associated protei | 0.981 | 0.951 | 0.525 | 1e-164 | |
| 224135703 | 611 | predicted protein [Populus trichocarpa] | 0.980 | 0.968 | 0.556 | 1e-162 | |
| 224121602 | 624 | predicted protein [Populus trichocarpa] | 1.0 | 0.967 | 0.560 | 1e-160 | |
| 356508622 | 622 | PREDICTED: microtubule-associated protei | 0.976 | 0.948 | 0.513 | 1e-159 | |
| 356512846 | 611 | PREDICTED: microtubule-associated protei | 0.968 | 0.957 | 0.510 | 1e-149 | |
| 22328012 | 615 | ARM repeat-containing protein-like prote | 0.908 | 0.892 | 0.494 | 1e-140 | |
| 17978932 | 615 | AT5g62580/K19B1_19 [Arabidopsis thaliana | 0.908 | 0.892 | 0.494 | 1e-140 |
| >gi|255540821|ref|XP_002511475.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis] gi|223550590|gb|EEF52077.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 364/625 (58%), Positives = 454/625 (72%), Gaps = 33/625 (5%)
Query: 1 MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGV 59
MA LK V L+ KLSDRDTY+ AA EL+SIA T++ T L T+LSCILST+++DKP V
Sbjct: 1 MAQNLKLKVLTLITKLSDRDTYNIAAAELESIAKTLENTTQLATYLSCILSTDTTDKPLV 60
Query: 60 RKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117
RK+C+ ++ LS H LS + KI+ ITR RD +S+++ C++TVSSL+ ++
Sbjct: 61 RKQCLCLLTALSIHHANYLSASLPKILVYITRRLRDHDSSIRTQCVATVSSLASKITKLP 120
Query: 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEV 175
F T LK LS+A+FTEQ+ NAQ+G+ALCLAA I+AA DP+AG+LG+ + VR+ERLLKSE
Sbjct: 121 FSTAFLKPLSEAVFTEQEMNAQIGSALCLAAAINAAPDPEAGRLGKALVVRMERLLKSEG 180
Query: 176 FKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234
+KAK+AGLVV+GSVIG G V D G+ GLV CL+GFLSS DWAARKAAAEAL RLAVVE+
Sbjct: 181 YKAKSAGLVVIGSVIGVGGVRDYGGIGGLVKCLVGFLSSDDWAARKAAAEALERLAVVER 240
Query: 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDG 294
D V EFK CLKIFES++FDKVK REVM++MIEAWKQVPD+SE+ SPPP+SL SKED
Sbjct: 241 DDVAEFKCWCLKIFESRKFDKVKAAREVMHQMIEAWKQVPDVSEDVSPPPRSLASSKEDA 300
Query: 295 SDRRYLTESRSSSTKGL---ELKKRSILASKSTPPDSSFPTTARKRGFL----KKVSPAV 347
SD RY S++S G +++K+ LAS++TPPD S T R+RG L KK S A+
Sbjct: 301 SDGRYPLSSKNSCAAGFQTPQMRKKPALASRTTPPDDSAATFTRRRGSLKSTEKKTSSAL 360
Query: 348 LHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENT---KLPKPETKRALFNWS 404
KVD KKP DW+ ++ P+ + T+ ++ +NEN + KPET+RALF S
Sbjct: 361 FRKVDCKKPFDWKVDVAIPNNTT--------TLAEVVDNENAPERRSIKPETRRALFGKS 412
Query: 405 SDDKVHKL---RSGSRVTPYNEESHEFT--VSDNTENLHIKHKDCEDLSTIRNQLVQIEQ 459
SDDK+ K +SGSRV P +EES T S+ TEN H HK+CEDLS+IRNQLVQIE+
Sbjct: 413 SDDKMLKFSGCKSGSRVVPCHEESPVSTAVASNVTENHHSNHKECEDLSSIRNQLVQIER 472
Query: 460 QQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCI 519
QQSSLLDLLQRF+G S++GMQSLETRV GLELALDEISYDLAVS+GRM TNS+ TCC+
Sbjct: 473 QQSSLLDLLQRFMGSSQNGMQSLETRVHGLELALDEISYDLAVSSGRM--TNSNRTTCCL 530
Query: 520 LPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQS 579
LPGADFLSSKFWRKTE R+S S+ S+ + T + M + K E L LE+RR Q
Sbjct: 531 LPGADFLSSKFWRKTESRHSASRLSSGT-TPPFSVMRHKDGKPDSLEMLNLESRRLLLQG 589
Query: 580 SGGFIVNPLAEIHPRSRGISEAAHQ 604
GGFIVNPLAEIH SRG+SE A
Sbjct: 590 GGGFIVNPLAEIH-ESRGLSEGAQH 613
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441039|ref|XP_004138291.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus] gi|449477623|ref|XP_004155074.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 337/622 (54%), Positives = 429/622 (68%), Gaps = 23/622 (3%)
Query: 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKE 62
+LK + L KLSDRDTYS AA EL+SIA +D + LP FLSCI ST++SDK VRK+
Sbjct: 9 QSLKLRILSCLTKLSDRDTYSLAASELESIAQNLDGSTLPIFLSCIYSTDASDKLLVRKQ 68
Query: 63 CIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120
CI + A +S H +L+PY++KI+++ITR FRD +S++++ C+S+V++L+ V F T
Sbjct: 69 CIRLFAVVSEIHGNSLAPYLSKILSNITRRFRDPDSSVRSACVSSVTALASGVTKPPFST 128
Query: 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180
LK L+D+LFTEQD+N+QVGAALCLA+ IDAA DPD K+G++ R E+LLK E FKAK
Sbjct: 129 FLKPLTDSLFTEQDSNSQVGAALCLASAIDAAPDPDPVKIGKLLPRFEKLLKCESFKAKP 188
Query: 181 AGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE 239
A L ++GSVIG GA+ LK LV CL+ FLSS+DWAARK+AAEAL +LAVVE+DA+ E
Sbjct: 189 ALLTLIGSVIGVDGALGNGALKNLVPCLVAFLSSEDWAARKSAAEALGKLAVVERDALAE 248
Query: 240 FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRY 299
FK CLK ES+RFDKVK VREVM++M+EAWKQ+PDLS+EAS P S SKE SD RY
Sbjct: 249 FKAGCLKTLESRRFDKVKAVREVMSQMLEAWKQIPDLSDEASAPAYSQSSSKEIVSDGRY 308
Query: 300 LTESRSSSTKGLEL---KKRSILASKSTPPDSSFPTTARKRGFL----KKVSPAVLHKVD 352
+++S+ L+ +K I A +STPPD+S T AR+R L KK S ++L K +
Sbjct: 309 PPGFKNNSSARLDAPLPRKNVISAYRSTPPDASPATAARRRSSLSGGDKKASLSMLQKAE 368
Query: 353 QKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHK- 411
+KKP DW+ ++S S D + R +E TK+ KPETKRALFN SDDK K
Sbjct: 369 RKKPLDWKVEVSVRKSPSGELKERDENIPDRRFSEKTKISKPETKRALFNKISDDKTIKF 428
Query: 412 --LRSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDL 467
LRSGSRV P E+ E TV S T++LH HKD E+L IRNQL QIE+QQSSLLD+
Sbjct: 429 GGLRSGSRVVPCPEDFPESTVVASSATDDLHRNHKDSEELHLIRNQLSQIEKQQSSLLDI 488
Query: 468 LQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLS 527
LQ FIG S++GM+SLETRV GLELALDEISYDLAVS+GRM+ N+ TCC+LPGADFLS
Sbjct: 489 LQNFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLS 548
Query: 528 SKFWRKTEGRYSPSKFSTSSGTSSLTAM------NYGTNKDRYAEKLKLENRRSRFQSSG 581
S+FW++ E R+S SKFST + L + +GTN D LEN R Q G
Sbjct: 549 SRFWKRAESRHSTSKFSTPIRATPLAPIRSRSGDRHGTNVD--VGSTNLENHRFHIQRRG 606
Query: 582 GFIVNPLAEIHPRSRGISEAAH 603
GF+VNPLA R S+ H
Sbjct: 607 GFMVNPLAVRQSEPRAASDVTH 628
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457188|ref|XP_002280600.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 331/617 (53%), Positives = 434/617 (70%), Gaps = 21/617 (3%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK V L KLSDRDT S AA EL+SIA T+ LLP FLSCI T+ SDK VRK+C+
Sbjct: 12 LKHRVFTCLTKLSDRDTQSIAATELESIARTLTQDLLPPFLSCIHQTDPSDKSPVRKQCV 71
Query: 65 HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
++ LS +H LSP+++K+++++ R RD +SA+++TCI+ +S++S + F +++
Sbjct: 72 RLLGILSETHGDALSPFLSKMLSNLIRRLRDPDSAVRSTCINAISAMSSHITKPPFSSIV 131
Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAG 182
K L++ LFTEQD NAQ+GA+LCLA+ IDAA DPD L R+ R+E+LLK + FKAK A
Sbjct: 132 KPLAETLFTEQDHNAQIGASLCLASAIDAAPDPDPALLRRLLPRIEKLLKCDSFKAKPAV 191
Query: 183 LVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK 241
L ++GS++ GA + +K LV C +GFLSS+DWAARKAAAE L +LAV+E+D + EFK
Sbjct: 192 LTLIGSIVEAGGATSYNVVKNLVPCAVGFLSSEDWAARKAAAEVLVKLAVMERDMLSEFK 251
Query: 242 GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLT 301
CLK FE++RFDKVK VR+ MN+M+ AWK++PD+S + SPPPQS SKE+ SD RY
Sbjct: 252 SSCLKTFEARRFDKVKAVRDTMNQMLGAWKEIPDVSNDVSPPPQSQSSSKENASDGRYPL 311
Query: 302 ESRSSSTKGLE---LKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKKPSD 358
ESR+S T G E ++K+SI S S +SS TT R+RG + K A+ K+++KK SD
Sbjct: 312 ESRNSCTGGSEVPLMRKKSIPTSISPQLNSSSATTVRRRGPVDKSGSAMFRKLERKKASD 371
Query: 359 WRDQISAPSGASLVDAHEDGTVLKIRN--------NENTKLPKPETKRALFNWSSDDKVH 410
+ +++AP S++ HEDG LK ++ NE + KPET+R LF +SDDK++
Sbjct: 372 LKVEVTAPHAPSVMRIHEDG--LKKKDEKAPERGENEKNRFTKPETRRVLFTKNSDDKMN 429
Query: 411 KL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLL 465
K RSGSRV P EE+ E TV S+ TE H HK+CEDLS IR QLVQIE QQSSLL
Sbjct: 430 KFGGFRSGSRVVPCQEENSETTVEVSNTTEVPHRNHKECEDLSLIRKQLVQIENQQSSLL 489
Query: 466 DLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADF 525
+LL++F+G S++G++SLETRV GLELALDEIS+DLAVS RM+ T++ GATCC+LPGADF
Sbjct: 490 NLLEKFMGSSQNGLRSLETRVHGLELALDEISFDLAVSNRRMSSTDTAGATCCMLPGADF 549
Query: 526 LSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIV 585
LSSKFWRKTEGR S S+FS S T S TAM Y K+ A K EN R R Q GGF+V
Sbjct: 550 LSSKFWRKTEGRGSTSRFSPSHATQSGTAMRYIAGKNDNAGTFKSENLRFRLQGGGGFVV 609
Query: 586 NPLAEIHPRSRGISEAA 602
NPLAEI SR ISE +
Sbjct: 610 NPLAEIPSDSRDISEVS 626
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516728|ref|XP_003527045.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like isoform 1 [Glycine max] gi|356516730|ref|XP_003527046.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 321/611 (52%), Positives = 429/611 (70%), Gaps = 18/611 (2%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
+K V L KLSDRDT + A EL+SIA T+DP +P FLSCI ST+SSDK VRK+C+
Sbjct: 13 IKQRVLTCLTKLSDRDTQAAGATELESIARTIDPHSVPVFLSCIHSTDSSDKTPVRKQCV 72
Query: 65 HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M 121
H++ATLS++H LSP+++KII + R RD +S+++A C +V +LS V F
Sbjct: 73 HLVATLSHAHGDALSPFLSKIIACLVRRLRDPDSSVRAACADSVGALSACVTRQPFAAAF 132
Query: 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAA 181
LK L++ALFTEQD ++Q GAALCLA+ ++AA DPD +L R+ RLERL+KS+VF+AK A
Sbjct: 133 LKPLAEALFTEQDPSSQAGAALCLASAVEAAPDPDPARLARLLPRLERLIKSKVFRAKPA 192
Query: 182 GLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240
LV+VGSV+ GA G LK LV CL+ L S+DWA RK AAEAL +LA VEKD +PEF
Sbjct: 193 LLVLVGSVVEARGASSGVALKNLVPCLVEALGSEDWATRKGAAEALKKLASVEKDLLPEF 252
Query: 241 KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYL 300
KG CLK+FE++RFDKVK+VREVMN+M+EAWKQ+PD+S+E SPPPQS SKE+ SD RY
Sbjct: 253 KGGCLKVFENRRFDKVKLVREVMNEMLEAWKQIPDVSDEFSPPPQSQLSSKENASDGRYP 312
Query: 301 TESRSSSTKGL---ELKKRSILASKSTPPDSSFPTTARKRGFL-KKVSPAVLHKVDQKKP 356
S++S + G +L+K+S SKSTPPD+S A++ ++S VL K++
Sbjct: 313 PVSQNSCSPGSVMSKLRKKSSQVSKSTPPDTSAVRNAKRSALSGDRMSSGVLQKLNH--- 369
Query: 357 SDWRDQISAPSGASLVDAHE-DGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKL--- 412
+ W +I+ + + + + D VL+ R + ++ KPETKRALF+ +SDDK+HK
Sbjct: 370 NHWDVRIAVSNVSDCGERQQKDEDVLERRKKDRSRFFKPETKRALFDKNSDDKMHKFGGS 429
Query: 413 RSGSRVTPYNEESHEF-TVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQRF 471
++GSRV P +EES + V + T++LH K+ E+LS IR QLVQIE+QQSSLLDL+Q+F
Sbjct: 430 KAGSRVVPCSEESQDSDPVCNVTKDLHRNDKESEELSLIRAQLVQIEKQQSSLLDLVQKF 489
Query: 472 IGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFW 531
+G SE+GM++LETRV GLELALDEISYDLAVS+GR+TK ++ TCC+LPGA+FLSSKFW
Sbjct: 490 MGSSENGMRTLETRVHGLELALDEISYDLAVSSGRITKFDAPKHTCCMLPGAEFLSSKFW 549
Query: 532 RKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEI 591
+KT+GRYS +FS + T L + +Y N R AE + + R GGF NPLAEI
Sbjct: 550 KKTQGRYSSYRFSRTGSTPLLPSSHYRAN--RNAESNRSTSHRLGVHGDGGFTTNPLAEI 607
Query: 592 HPRSRGISEAA 602
SR IS +A
Sbjct: 608 KINSREISGSA 618
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135703|ref|XP_002322140.1| predicted protein [Populus trichocarpa] gi|222869136|gb|EEF06267.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 347/623 (55%), Positives = 443/623 (71%), Gaps = 31/623 (4%)
Query: 1 MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVR 60
MA LK V L+ KLSDRDTY A+ EL+ IA ++D T LPTFLSCILST+++DKP VR
Sbjct: 1 MAQKLKLKVLTLITKLSDRDTYKIASTELEKIAGSLDSTTLPTFLSCILSTDANDKPLVR 60
Query: 61 KECIHVIATLS--NSHNLSPYITKIINSITRNFRDKNSA-LQATCISTVSSLSPRVGASA 117
K+C+H+++TLS S++LS + KI++ ITR RD +S+ +++ C++ ++SL+ V
Sbjct: 61 KQCLHLLSTLSALYSNSLSNSLPKILSYITRRLRDPDSSVIRSQCLTAITSLASNVTKLP 120
Query: 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEV 175
F T LK LS+++FTEQ+ NAQ+G+ALCLAA IDAA DP+ G+LG+M V R+ERL++SE
Sbjct: 121 FSTAFLKQLSESVFTEQELNAQIGSALCLAAAIDAAPDPEPGRLGKMLVPRMERLVRSEG 180
Query: 176 FKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233
+KA+ AGLVVVGSVIG G G G LV CL+GFLSS+DW +RKAAAEAL +LAVVE
Sbjct: 181 YKARFAGLVVVGSVIGVGGARGIGGGIGGLVKCLVGFLSSEDWNSRKAAAEALRKLAVVE 240
Query: 234 KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKED 293
+D V EFK +CLK+FE++RFDKVK REVMN+ IEAWKQVPD+SEEASPPP+SL S+ED
Sbjct: 241 RDGVAEFKSECLKVFENRRFDKVKAAREVMNETIEAWKQVPDVSEEASPPPRSLASSRED 300
Query: 294 GSDRRYLTESRSSSTKGLE---LKKRSILASKSTPPDSSFPTTARKRGFLK----KVSPA 346
SD+R+ + S++S G E + K+SILA ++TPPD S TARKR LK K S A
Sbjct: 301 ASDKRHWSGSKNSCAAGSEATQMGKKSILAMRTTPPDGSLAATARKRSPLKSTEKKTSLA 360
Query: 347 VLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSD 406
+ KVDQKK DW+ +IS P+ S A E+ RN +N + + +SD
Sbjct: 361 MYGKVDQKKLVDWKVEISVPNSISSTAAGEND-----RNEKNANVSERSK-------NSD 408
Query: 407 DKVHKL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQQ 461
+K K +SGSRV P EES + TV S TEN H HK+ EDLS IRNQLVQIE+QQ
Sbjct: 409 EKTLKFGGFKSGSRVAPCYEESPQSTVVASSGTENQHSNHKEPEDLSLIRNQLVQIERQQ 468
Query: 462 SSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILP 521
SSLLDLLQ FIG S++GM+SLETRV GLELALDEISYDLAVS+ MT +S+ TCC+LP
Sbjct: 469 SSLLDLLQSFIGSSQNGMRSLETRVHGLELALDEISYDLAVSSRGMTNRDSNRTTCCLLP 528
Query: 522 GADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSG 581
GADFLSSKFWRKT+GRYS S+ S+S GTS A+ + +++ +E L N+R R Q
Sbjct: 529 GADFLSSKFWRKTDGRYSNSRISSSRGTSLSAAVRHRADRNGQSETSNLGNQRLRLQGGA 588
Query: 582 GFIVNPLAEIHPRSRGISEAAHQ 604
GFIVNPLAEIH +R SE
Sbjct: 589 GFIVNPLAEIHGGARVNSEVTQH 611
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121602|ref|XP_002318624.1| predicted protein [Populus trichocarpa] gi|222859297|gb|EEE96844.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 350/624 (56%), Positives = 450/624 (72%), Gaps = 20/624 (3%)
Query: 1 MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVR 60
MA LK V L+ KLSDRDTY+ A++E++ IA ++D T L TFLSCILST+S+DKP VR
Sbjct: 1 MAQKLKLKVLTLITKLSDRDTYAIASREIEGIAESLDNTTLSTFLSCILSTDSTDKPLVR 60
Query: 61 KECIHVIATLSN--SHNLSPYITKIINSITRNFRDKNSAL-QATCISTVSSLSPRVGASA 117
K C+H+++TLS+ S++L+ + KI++ ITR RD +S++ ++ C++ ++SL+ ++
Sbjct: 61 KHCLHLLSTLSHLYSNSLASSLPKILSYITRRLRDPDSSITRSQCLTAMTSLASKITKVP 120
Query: 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEV 175
F T LK LS+++FTEQ+ NAQ+G+ALCLAA IDAA DP+ G+LG++ + RLERL+KSE
Sbjct: 121 FSTAFLKQLSESVFTEQELNAQIGSALCLAAAIDAAPDPEPGRLGKVLLPRLERLVKSEG 180
Query: 176 FKAKAAGLVVVGSVIGSGAVDGSGLKGLVS--CLLGFLSSQDWAARKAAAEALWRLAVVE 233
+KAK AGLVVVGSVIG G V G+G CL+GFLS++DW +RKAAAEAL +LAVVE
Sbjct: 181 YKAKFAGLVVVGSVIGVGGVRGTGGGTGGLVKCLVGFLSTEDWNSRKAAAEALRKLAVVE 240
Query: 234 KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKED 293
+D V EFK +CLK+FES+R+DKVK REVMN+ IEAWKQVPD+SEE SPPP+SL S+ED
Sbjct: 241 RDGVAEFKSECLKVFESRRYDKVKAAREVMNETIEAWKQVPDVSEEESPPPRSLASSRED 300
Query: 294 GSDRRYLTESRSSSTKGLE---LKKRSILASKSTPPDSSF-PTTARKRGFLKKV----SP 345
SD R+ + S+ G E + K+SIL K+TPPDSS TTARKRG LK +P
Sbjct: 301 ASDGRHGSGSKKLHLAGSEAPQMMKKSILDFKNTPPDSSLIATTARKRGPLKSTDEGTNP 360
Query: 346 AVLHKVDQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSS 405
A+ KVDQKK DW+ +IS P+ S A E+ +K + K ETKR+LF+ +S
Sbjct: 361 AMYGKVDQKKMVDWKVEISVPNSISSTAAGENDLKMKNAKVPEKRFAKAETKRSLFSKNS 420
Query: 406 DDKVHKL---RSGSRVTPYNEESHEFTV--SDNTENLHIKHKDCEDLSTIRNQLVQIEQQ 460
DDK K +SGSRV P +EES TV S TEN H H +CEDLS IR QLVQIE+Q
Sbjct: 421 DDKKLKFGGFKSGSRVAPCHEESPHSTVVASSGTENHHSNHNECEDLSLIRFQLVQIERQ 480
Query: 461 QSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCIL 520
QSSLLDLLQ FIG S++GM SLETRV GLELALDEISYDLAVS+GRMT T+S+ TCC+L
Sbjct: 481 QSSLLDLLQSFIGSSQNGMHSLETRVRGLELALDEISYDLAVSSGRMTNTDSNRTTCCLL 540
Query: 521 PGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSS 580
PGADFLSSKFW+KTEGRYS S+ +S GT + + +++ ++E + L N+R R Q
Sbjct: 541 PGADFLSSKFWKKTEGRYSNSRIYSSRGTPLSAVVRHRADRNGHSETINLGNQRLRLQGG 600
Query: 581 GGFIVNPLAEIHPRSRGISEAAHQ 604
GG IVNPLAEIH SR SE Q
Sbjct: 601 GGLIVNPLAEIHGGSRLNSEVTQQ 624
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508622|ref|XP_003523054.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 315/614 (51%), Positives = 425/614 (69%), Gaps = 24/614 (3%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
+K V L KLSDRDT A EL+SIA T+DP +P FLSCI ST++SDK VRK+C+
Sbjct: 12 IKQRVLTCLTKLSDRDTQVAGANELESIARTLDPHSVPVFLSCIHSTDASDKTPVRKQCV 71
Query: 65 HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M 121
H++ATLS++H LSP+++KI+ + R RD +S+++A C +V +LS RV F
Sbjct: 72 HLVATLSHAHGDALSPFLSKILACLVRRLRDPDSSIRAACADSVGALSARVTRQPFAAAF 131
Query: 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAA 181
LK L++ALFTEQD ++Q GAALCLA+ I+AA DPD +L R+ RLERL+KS+VF+AK A
Sbjct: 132 LKPLAEALFTEQDPSSQAGAALCLASAIEAAPDPDPARLARLLPRLERLIKSKVFRAKPA 191
Query: 182 GLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240
L +VGSV+ GA G+ L+ LV CLL L S+DWA RK AAEAL +LA VE+D + EF
Sbjct: 192 LLALVGSVVEARGATSGAALRSLVPCLLEALGSEDWATRKGAAEALKKLASVERDLLAEF 251
Query: 241 KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYL 300
KG CLK+FE +RFDKVK+VREVMN+M+EAWK +PD+S+E SPPPQ SKE+ SD RY
Sbjct: 252 KGGCLKVFEDRRFDKVKLVREVMNQMLEAWKHIPDVSDEFSPPPQLQLSSKENASDGRYP 311
Query: 301 TESRSSSTKGL---ELKKRSILASKSTPPDSSFPTTARKRGFL-KKVSPAVLHKVDQKKP 356
S++S + G +L+K+S ASKSTPPD S A+K ++ VL K++
Sbjct: 312 PVSQNSCSPGSVMSKLRKKSSPASKSTPPDRSAVRNAKKSALSGDRMGSGVLQKLNH--- 368
Query: 357 SDWRDQISAPSGASLVDAHE----DGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKL 412
+ W +I+ +++ D E D VL+ + ++ K ETKRALF+ +SDDK+HK
Sbjct: 369 NHWDVRIAV---SNVPDRGERRQKDEDVLERSKKDKSRFFKQETKRALFDKNSDDKMHKS 425
Query: 413 ---RSGSRVTPYNEESHEF-TVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLL 468
++GSRV P +EES + V + T++LH K+ E+LS IR QLVQIE+QQSSLLDL+
Sbjct: 426 GGSKAGSRVVPCSEESQDSGPVCNVTKDLHRNDKESEELSLIRAQLVQIEKQQSSLLDLV 485
Query: 469 QRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSS 528
Q+F+G SE+GM +LETRV GLELALDEISYDLAVS+GR++K+++ TCC+LPGA+FLS+
Sbjct: 486 QKFMGNSENGMHTLETRVHGLELALDEISYDLAVSSGRISKSDAPKNTCCLLPGAEFLST 545
Query: 529 KFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPL 588
KFW+KT+GRYS +FS + T L + +Y N R A+ +L + R R G F+ NPL
Sbjct: 546 KFWKKTQGRYSSYRFSRTGSTPLLASSHYRAN--RNAKSNRLASHRFRVHGDGSFMTNPL 603
Query: 589 AEIHPRSRGISEAA 602
AEI SR IS +A
Sbjct: 604 AEIKINSREISGSA 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512846|ref|XP_003525126.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 311/609 (51%), Positives = 420/609 (68%), Gaps = 24/609 (3%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
+K V L KLSDRDT S AA EL+SIA +D T LP FLSC+ ST++SDKP VRK+C+
Sbjct: 8 IKQRVFTCLTKLSDRDTQSLAAAELESIARNLDATTLPAFLSCMYSTDASDKPPVRKQCV 67
Query: 65 HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
H++ L+ +H L+PY++KI+ S+ R RD +S++++ C++++++LS V + L
Sbjct: 68 HLLGFLAQTHGNMLAPYLSKILGSVVRRLRDVDSSVRSACVNSIAALSGHVSKQPLNSFL 127
Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAG 182
K L++ALFTEQD NAQ AALCLA+ ID A DPD +L ++ R E+LLK + FKAK A
Sbjct: 128 KPLAEALFTEQDQNAQASAALCLASAIDGAPDPDPARLAKLLPRFEKLLKRDGFKAKPAL 187
Query: 183 LVVVGSVIGSGAVDGSG-LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK 241
L +VGSV+ +G G LK LV CL+ LS+ DWA RKAAAE L +A VE+D + EFK
Sbjct: 188 LTLVGSVVAAGGASGHAQLKSLVPCLVEALSNDDWATRKAAAETLVVVADVERDFLSEFK 247
Query: 242 GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLT 301
G+C+++FE++RFDKVK+VR+VMN+M+EAWK VPD+S+E SPPP+S SKE+ SD RY
Sbjct: 248 GECVRVFENRRFDKVKLVRDVMNQMLEAWKLVPDVSDEVSPPPKSQSSSKENASDGRYPQ 307
Query: 302 ESRSS-STKGL--ELKKRSILASKSTPPDSSFPTTARKRG---FLKKVSPAVLHKVDQKK 355
S++S S + + L+++S S+ +P DSS + A+ K++S +V K++ K
Sbjct: 308 VSQNSCSPRSMMANLRRKSTPFSRFSPADSSSASNAKNTSASSSNKRMSSSVSRKLNHK- 366
Query: 356 PSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKL--- 412
+W QI+ L + DG V + + + + KPETKRAL N SS+DK+ K
Sbjct: 367 --NWDAQIAVADQGDLQE--RDGIVSERSKMDKSGVSKPETKRALLNKSSEDKIQKYGGS 422
Query: 413 RSGSRVTPYNEESHE--FTVSDNTENLHIKHKDCEDLSTIRNQLVQIEQQQSSLLDLLQR 470
++GSRV PY E+ + VS +++L K+ EDLS IR+QL QIE QQSSLLDLLQ+
Sbjct: 423 KAGSRVVPYQEDESQDSVPVSIVSKDLQRNDKESEDLSLIRDQLHQIENQQSSLLDLLQK 482
Query: 471 FIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGADFLSSKF 530
F+G S++GM+SLETRV GLELALDEISYDLA+S+GRMTK + HG TCC+LPGA+FLSSKF
Sbjct: 483 FMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKPDPHGNTCCMLPGAEFLSSKF 542
Query: 531 WRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAE 590
WRKT GR S ++FS S GT SL AMNY N+D + KL N RF+ GGFI NPLAE
Sbjct: 543 WRKTHGRDSITRFSRSGGTPSLAAMNYQANRD---AETKLANH--RFRPDGGFITNPLAE 597
Query: 591 IHPRSRGIS 599
IH SR +
Sbjct: 598 IHTNSRNFA 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328012|ref|NP_201064.2| ARM repeat-containing protein-like protein [Arabidopsis thaliana] gi|38564286|gb|AAR23722.1| At5g62580 [Arabidopsis thaliana] gi|332010245|gb|AED97628.1| ARM repeat-containing protein-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 306/619 (49%), Positives = 403/619 (65%), Gaps = 70/619 (11%)
Query: 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRK 61
K +++ LL KL DRDT++ AA+ELD +A +DP+ L +F+S ILS ++ DKP VRK
Sbjct: 7 KQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGDKPAVRK 66
Query: 62 ECIHVIATLSNS---HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118
CIH++A LS S ++LSP+++KI+ ITR RD +S++++TC++ VS++S R F
Sbjct: 67 HCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISSRTTKPPF 126
Query: 119 VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEVF 176
+ +K L+D LFTEQ+ NAQ+GAALCLAA ID+A DPD +LG+ + RLE+L+K F
Sbjct: 127 YSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLLPRLEKLVKCNAF 186
Query: 177 KAKAAGLVVVGSVIGSGAVDGS-----GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231
KAK+AG+VV+GSVIG+G + G+ GLKGLV CLL FL S+DWAARKAAAEAL RLA
Sbjct: 187 KAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAARKAAAEALGRLAT 246
Query: 232 VEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSK 291
+E++ + EFK KCLKIFES+++DKVK VREVMN+M+EAWKQVPDLSEE S PP+S SK
Sbjct: 247 MERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVPDLSEEVS-PPRSNASSK 305
Query: 292 EDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVS------P 345
D SD RY + SR ST K R+ L ++STPP SS TTARK+ K +
Sbjct: 306 GDASDGRYPSGSRVGSTPA---KSRTHLVNRSTPPGSSLATTARKQANRKSIDQKKTSLT 362
Query: 346 AVLHKVDQKKPSDWR-DQISAPSGASLVD-AHEDGTVLKIRNNENTKLPKPETKRALFNW 403
A L K + ++ +W+ S P+G SL D H D ++EN K ET
Sbjct: 363 ASLTKPNVRRRLEWKAGGASIPTGVSLEDEQHCD-------HDENAK----ETSH----- 406
Query: 404 SSDDKVHKLRSGS-----RVTPYNEE----SHEFTVSDNTENLHIKHKDCEDLSTIRNQL 454
SS + V KL S + P H + + N+ N K ED+S IRNQL
Sbjct: 407 SSHNTVQKLGGVSSSLNGNIPPSGATMVTGHHVLSENPNSNNC----KGLEDISLIRNQL 462
Query: 455 VQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHG 514
VQIEQQQ++L+DLLQRF+G S+ GM+ LETRV GLELALDEISYDLAVS GRM+ +S
Sbjct: 463 VQIEQQQANLMDLLQRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSSRN 522
Query: 515 ATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRR 574
CC+LP F+ SKFW+K + +YS S+ ST ++R AE +++N R
Sbjct: 523 -NCCLLPSGSFIKSKFWKKHDSKYSASRMSTY--------------RNRNAETTEIQNSR 567
Query: 575 SRFQSSGGFIVNPLAEIHP 593
RF S GFIVNPLAEI P
Sbjct: 568 HRFNGSPGFIVNPLAEIRP 586
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17978932|gb|AAL47433.1| AT5g62580/K19B1_19 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 306/619 (49%), Positives = 402/619 (64%), Gaps = 70/619 (11%)
Query: 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRK 61
K + + LL KL DRDT++ AA+ELD +A +DP+ L +F+S ILS ++ DKP VRK
Sbjct: 7 KQNTSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGDKPAVRK 66
Query: 62 ECIHVIATLSNS---HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118
CIH++A LS S ++LSP+++KI+ ITR RD +S++++TC++ VS++S R F
Sbjct: 67 HCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISSRTTKPPF 126
Query: 119 VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERLLKSEVF 176
+ +K L+D LFTEQ+ NAQ+GAALCLAA ID+A DPD +LG+ + RLE+L+K F
Sbjct: 127 YSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLLPRLEKLVKCNAF 186
Query: 177 KAKAAGLVVVGSVIGSGAVDGS-----GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231
KAK+AG+VV+GSVIG+G + G+ GLKGLV CLL FL S+DWAARKAAAEAL RLA
Sbjct: 187 KAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAARKAAAEALGRLAT 246
Query: 232 VEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSK 291
+E++ + EFK KCLKIFES+++DKVK VREVMN+M+EAWKQVPDLSEE S PP+S SK
Sbjct: 247 MERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVPDLSEEVS-PPRSNASSK 305
Query: 292 EDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVS------P 345
D SD RY + SR ST K R+ L ++STPP SS TTARK+ K +
Sbjct: 306 GDASDGRYPSGSRVGSTPA---KSRTHLVNRSTPPGSSLATTARKQANRKSIDQKKTSLT 362
Query: 346 AVLHKVDQKKPSDWR-DQISAPSGASLVD-AHEDGTVLKIRNNENTKLPKPETKRALFNW 403
A L K + ++ +W+ S P+G SL D H D ++EN K ET
Sbjct: 363 ASLTKPNVRRRLEWKAGGASIPTGVSLEDEQHCD-------HDENAK----ETSH----- 406
Query: 404 SSDDKVHKLRSGS-----RVTPYNEE----SHEFTVSDNTENLHIKHKDCEDLSTIRNQL 454
SS + V KL S + P H + + N+ N K ED+S IRNQL
Sbjct: 407 SSHNTVQKLGGVSSSLNGNIPPSGATMVTGHHVLSENPNSNNC----KGLEDISLIRNQL 462
Query: 455 VQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHG 514
VQIEQQQ++L+DLLQRF+G S+ GM+ LETRV GLELALDEISYDLAVS GRM+ +S
Sbjct: 463 VQIEQQQANLMDLLQRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSSRN 522
Query: 515 ATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMNYGTNKDRYAEKLKLENRR 574
CC+LP F+ SKFW+K + +YS S+ ST ++R AE +++N R
Sbjct: 523 -NCCLLPSGSFIKSKFWKKHDSKYSASRMSTY--------------RNRNAETTEIQNSR 567
Query: 575 SRFQSSGGFIVNPLAEIHP 593
RF S GFIVNPLAEI P
Sbjct: 568 HRFNGSPGFIVNPLAEIRP 586
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 604 | ||||||
| TAIR|locus:2154144 | 615 | AT5G62580 [Arabidopsis thalian | 0.855 | 0.840 | 0.421 | 6.6e-97 | |
| TAIR|locus:2205739 | 625 | AT1G27210 [Arabidopsis thalian | 0.862 | 0.833 | 0.338 | 1.9e-67 | |
| TAIR|locus:2025906 | 498 | AT1G59850 "AT1G59850" [Arabido | 0.521 | 0.632 | 0.323 | 1.6e-40 | |
| TAIR|locus:2060161 | 820 | AT2G07170 [Arabidopsis thalian | 0.620 | 0.457 | 0.268 | 4e-28 | |
| TAIR|locus:2136467 | 864 | TOR1 "TORTIFOLIA 1" [Arabidops | 0.559 | 0.391 | 0.248 | 1.5e-23 | |
| TAIR|locus:2036411 | 821 | AT1G50890 "AT1G50890" [Arabido | 0.599 | 0.440 | 0.230 | 1.4e-16 |
| TAIR|locus:2154144 AT5G62580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 234/555 (42%), Positives = 316/555 (56%)
Query: 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRK 61
K +++ LL KL DRDT++ AA+ELD +A +DP+ L +F+S ILS ++ DKP VRK
Sbjct: 7 KQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGDKPAVRK 66
Query: 62 ECIHVIATLSNS---HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118
CIH++A LS S ++LSP+++KI+ ITR RD +S++++TC++ VS++S R F
Sbjct: 67 HCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISSRTTKPPF 126
Query: 119 VT-MLKLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEV-RLERLLKSEVF 176
+ +K L+D LFTEQ+ NAQ+G DPD +LG+ + RLE+L+K F
Sbjct: 127 YSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLLPRLEKLVKCNAF 186
Query: 177 KAKXXX-----XXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXXX 231
KAK LKGLV CLL FL S+D
Sbjct: 187 KAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAARKAAAEALGRLAT 246
Query: 232 XXKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSK 291
++ + EFK KCLKIFES+++DKVK VREVMN+M+EAWKQVPDLSEE SPP +S SK
Sbjct: 247 MERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVPDLSEEVSPP-RSNASSK 305
Query: 292 EDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVSP------ 345
D SD RY + SR ST K R+ L ++STPP SS TTARK+ K +
Sbjct: 306 GDASDGRYPSGSRVGSTPA---KSRTHLVNRSTPPGSSLATTARKQANRKSIDQKKTSLT 362
Query: 346 AVLHKVDQKKPSDWR-DQISAPSGASLVDA-HEDGTVLKIRNNENTKLPKPETKRALFNW 403
A L K + ++ +W+ S P+G SL D H D N + T T + L
Sbjct: 363 ASLTKPNVRRRLEWKAGGASIPTGVSLEDEQHCDHD----ENAKETSHSSHNTVQKLGGV 418
Query: 404 SSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEXXXXX 463
SS + SG+ + + H + + N+ N K ED+S IRNQLVQIE
Sbjct: 419 SSSLNGNIPPSGATMVTGH---HVLSENPNSNNC----KGLEDISLIRNQLVQIEQQQAN 471
Query: 464 XXXXXXRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGATCCILPGA 523
RF+G S+ GM+ LETRV GLELALDEISYDLAVS GRM+ +S CC+LP
Sbjct: 472 LMDLLQRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMSNGSSRN-NCCLLPSG 530
Query: 524 DFLSSKFWRKTEGRY 538
F+ SKFW+K + +Y
Sbjct: 531 SFIKSKFWKKHDSKY 545
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| TAIR|locus:2205739 AT1G27210 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 184/544 (33%), Positives = 274/544 (50%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK V LNKL+DRDT + A+ ELDSIA + FL+CI +T+SS K VRK+C+
Sbjct: 35 LKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPFLNCIHNTDSSVKSPVRKQCV 94
Query: 65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
+++ LS H +L+P++ K+++++ R RD +S++++ C + +S V F ++
Sbjct: 95 ALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSAHVTRQPFASVA 154
Query: 123 KLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVFKAKXXX 182
K L + L E D+N Q+G DP++ +L + ++ +LLKS+ FKAK
Sbjct: 155 KPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRKSLPKIGKLLKSDGFKAKAAL 214
Query: 183 XXXXXXXXXXXXXXXX-XLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXXXXXKDAVPEFK 241
L LV L+ FLSS+D +D ++K
Sbjct: 215 LSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKSAAEALGKVATA-EDLASQYK 273
Query: 242 GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLT 301
C ES+RFDKVK VRE MN+ + WK+V +EAS P S +DG+ + +
Sbjct: 274 KTCTTALESRRFDKVKSVRETMNRALNLWKEV-STDDEASLSPSR--SSTDDGNIGCFSS 330
Query: 302 ESRSSSTK-GLEL----KKRSILA-SKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQKK 355
+RSS+ GL+ K I+ S S P + S+ T +K K+ + V++
Sbjct: 331 VTRSSTIDVGLKSARPKKVTPIMKRSPSLPVNRSYAATRQKENLPKRNQGNMTMLVEEAS 390
Query: 356 PSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSG 415
D + P S + E N+ + K S LRSG
Sbjct: 391 SVDNKGPHFTPVKKSSEETEEKA------NSGGPDIIKHTISEKSREDSKVSSFGGLRSG 444
Query: 416 SRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLVQIEXXXXXXXXXXXRFIGRS 475
SRV P +++ +V + +++ KD E+LS IR QL IE +F+G S
Sbjct: 445 SRVAPCSDDGD--SVKNCKDDVEESKKDSEELSLIREQLALIENQQSSLLDLLQKFMGTS 502
Query: 476 ESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSH--GATCCILPGADFLSSKFWRK 533
+SG+QSLE+RV GLE+ALDEIS DLAVS GR+ + +S G +C LPG +FLS KFWRK
Sbjct: 503 QSGIQSLESRVSGLEMALDEISCDLAVSNGRVPRNSSGCAGDSCSKLPGTEFLSPKFWRK 562
Query: 534 TEGR 537
TE R
Sbjct: 563 TEER 566
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| TAIR|locus:2025906 AT1G59850 "AT1G59850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 105/325 (32%), Positives = 164/325 (50%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK V LN+LSDRDT + AA ELDSIA + P F++C+ ST+SS K VRK C+
Sbjct: 22 LKQRVIACLNRLSDRDTLALAAAELDSIALNLSPETFSLFINCLQSTDSSAKSPVRKHCV 81
Query: 65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
+++ LS SH +L+P+++K+++++ R RD +S+++A C++ ++ + F +
Sbjct: 82 SLLSVLSRSHGDSLAPHLSKMVSTVLRRLRDPDSSVRAACVAASVDMTTNITGQPFSILF 141
Query: 123 KLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVFKAKXXX 182
+ + + + D NAQ+ +PD +L + ++ +LLKSE FKAK
Sbjct: 142 GPMIETVIHDCDPNAQISAAMCLAAAVDAADEPDVEQLQKALPKIGKLLKSEGFKAKAEL 201
Query: 183 XXXXXXXXXXXXXXXXXLKGLVSCLLG----FLSSQDXXXXXXXXXXXXXXXXXXKDAVP 238
K ++ LL FLSS D ++ P
Sbjct: 202 LGAIGTVIGAVGGRNSE-KAVLDWLLPNVSEFLSSDDWRARKAAAEAMARVAMVEEELAP 260
Query: 239 EFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRR 298
+K CL I ES+RFDKVK+VRE MN+ + WKQ+ S E S +S SK S
Sbjct: 261 LYKKTCLGILESRRFDKVKLVRETMNRTLGLWKQLEGDSTEVS---ESSSSSKSASSGLS 317
Query: 299 YLTESRSSSTKGLELKKRSILASKS 323
+ RS++ KG + + L+SKS
Sbjct: 318 ATSGKRSNTLKGKDRNLNTPLSSKS 342
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| TAIR|locus:2060161 AT2G07170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 109/406 (26%), Positives = 174/406 (42%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK V LNKL+DRDTY + EL+ + P + FLSCIL T+S K VRKECI
Sbjct: 27 LKKKVVIALNKLADRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKECI 86
Query: 65 HVIATLSNSHN--LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA------S 116
++ TL+ H + PY+ K+++SI + +D +S ++ CI T+ L+ ++
Sbjct: 87 RLMGTLARFHEGLVGPYLGKMVSSIVKRLKDPDSVVRDACIETMGVLASKMSCYEDQNFG 146
Query: 117 AFVTMLKLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERLLKSEVF 176
FV+++K L +A+ +Q+ Q G + + RM +R +LL + F
Sbjct: 147 VFVSLVKPLFEAI-GDQNKYVQSGAALCLARVIDSSPEAPVAIIQRMLMRTVKLLNNSHF 205
Query: 177 KAK-XXXXXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXXXXXKD 235
AK L +S L ++D +
Sbjct: 206 IAKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATGEK 265
Query: 236 AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPS-KEDG 294
+ K C+ ES RFDKVK VR+ + ++ WK VP S+ SP P + S KE
Sbjct: 266 FLGPLKASCICSLESCRFDKVKPVRDSVILALKYWKGVPG-SD--SPEPSETESSVKESY 322
Query: 295 SDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFLKKVSPAVLHKVDQK 354
+ R S ST ++K + + P +AR+ P + D +
Sbjct: 323 NGAR--ESSELFSTSDFKVKDGMSIKYVTDVTRKKVPVSARQ--------PPTRYNDDPR 372
Query: 355 KPS--DWRDQISAPSGA--SLVDAHED---GTVLKIRNNENTKLPK 393
K + DW +I+ P + S VD + + G+ + E T P+
Sbjct: 373 KSNQDDWHIEIAVPESSFVSKVDLYNEESEGSCITKTFAETTNTPE 418
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| TAIR|locus:2136467 TOR1 "TORTIFOLIA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 91/366 (24%), Positives = 159/366 (43%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK + ++KL+DRDTY A ++L+ ++ P LP FL+C+ + S KP V+KEC+
Sbjct: 42 LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECL 101
Query: 65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS----------PR 112
H+++ + + H + + ++TKII I + +D +S ++ C T+ +LS
Sbjct: 102 HLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTN 161
Query: 113 VGASAFVTML--KLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLERL 170
G+++ L K L +A+ EQ+ Q G P ++ R+ +L
Sbjct: 162 TGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKL 220
Query: 171 LKSEVFKAKXXXXXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXXXX 230
L + F AK L+ L+ + L S D
Sbjct: 221 LSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALA 280
Query: 231 XXXKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPS 290
+ E + + E+ RFDK+K VRE + + ++ WK++ + + L S
Sbjct: 281 SHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSAS 340
Query: 291 KEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSS------FPTTARKRGFLKKVS 344
++ GS++ E RS+ +L K+ + PDS+ FP A G LKK +
Sbjct: 341 EQLGSEKN--GEKRSNLA---DLMKKEASDGSTLSPDSASKGKGCFPEKAV--GLLKKKA 393
Query: 345 PAVLHK 350
P + K
Sbjct: 394 PVLSDK 399
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| TAIR|locus:2036411 AT1G50890 "AT1G50890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 238 (88.8 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 88/382 (23%), Positives = 155/382 (40%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKE 62
LK + L++L DRDTY A +L+ I +V P +LP L C+ ++S K V++E
Sbjct: 37 LKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKRE 96
Query: 63 CIHVIATLSNSH-NLS-PYITKIINSITRNFRDKNSALQATCISTVSSLSPR-------- 112
I +++ L S+ +LS + KII+ I + +D ++ ++ C + SLS +
Sbjct: 97 SIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEVE 156
Query: 113 ----VGASAFVTMLKLLSDALFTEQDTNAQVGXXXXXXXXXXXXQDPDAGKLGRMEVRLE 168
VG+S K L +A+ EQ+ + Q G +P ++ R+
Sbjct: 157 NGNYVGSSLVGLFAKPLFEAM-AEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRIS 215
Query: 169 RLLKSEVFKAKXXXXXXXXXXXXXXXXXXXXLKGLVSCLLGFLSSQDXXXXXXXXXXXXX 228
+LL S + K L+ L+ + L +
Sbjct: 216 KLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLIS 275
Query: 229 XXXXXKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLD 288
V + L E+ RFDK+K VRE +++ + WK + E + Q
Sbjct: 276 LAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQKDV 335
Query: 289 PSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRGFL---KKVSP 345
S++ +R T+S S GL ++ S S+ S RK+ K ++P
Sbjct: 336 SSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSISKAVLILRKKAPRLTGKDLNP 395
Query: 346 AVLHKVDQKKPSDWRDQISAPS 367
K++++ D ++ PS
Sbjct: 396 EFFQKLEKRGSGDMPVEVILPS 417
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_XV0443 | SubName- Full=Putative uncharacterized protein; (612 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 604 | |||
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.96 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.9 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.27 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.2 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.2 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.12 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.11 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.06 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.02 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.96 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.95 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.95 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.7 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.6 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.57 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.51 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.51 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.48 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.47 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.46 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.44 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.42 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.35 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.35 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.31 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.29 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.2 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.16 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.05 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.04 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.02 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.02 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 97.98 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.89 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.87 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 97.84 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.82 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.8 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.79 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.79 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 97.78 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.76 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.74 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.73 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.62 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 97.59 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.57 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.56 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.56 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.52 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.45 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.44 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.39 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 97.38 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.27 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.21 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.13 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.1 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.07 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 97.04 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 97.04 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 97.0 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.68 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.66 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 96.54 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.47 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.46 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.44 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 96.36 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.35 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 96.34 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 96.33 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.32 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 96.22 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 96.15 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.01 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 95.96 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 95.81 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 95.62 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.62 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.52 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.47 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.31 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 95.31 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.27 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.26 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 94.99 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 94.98 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.98 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 94.95 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 94.9 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.88 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.78 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 94.71 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 94.57 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 94.56 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.52 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 94.51 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.5 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 94.46 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 94.42 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.29 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 94.23 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 94.18 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 94.09 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 94.06 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 93.99 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 93.84 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 93.75 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 93.75 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 93.72 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 93.7 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 93.47 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 93.09 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 92.95 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 92.9 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 92.73 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 92.52 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 92.43 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 92.3 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.19 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 92.07 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 92.02 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 91.87 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 91.81 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 91.8 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 91.74 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 91.71 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 91.61 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.51 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 91.45 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 91.33 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 91.22 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 91.07 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 91.01 | |
| KOG1837 | 1621 | consensus Uncharacterized conserved protein [Funct | 90.8 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 90.56 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 90.48 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 90.41 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 90.25 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 90.19 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 90.17 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 90.01 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 89.94 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 89.77 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 89.7 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 89.67 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.65 | |
| PF12397 | 121 | U3snoRNP10: U3 small nucleolar RNA-associated prot | 89.52 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 89.48 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 89.14 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 89.0 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 88.82 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 88.82 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 88.42 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 88.38 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 87.67 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 87.0 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 86.93 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 86.77 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 86.6 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 86.39 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 86.11 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 86.08 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 85.99 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 85.35 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 85.02 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 84.85 | |
| PF04510 | 174 | DUF577: Family of unknown function (DUF577); Inter | 84.76 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 84.75 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 84.66 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 84.41 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 83.79 | |
| PF10350 | 255 | DUF2428: Putative death-receptor fusion protein (D | 83.77 | |
| PF05327 | 563 | RRN3: RNA polymerase I specific transcription init | 83.31 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 83.24 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 82.98 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 82.2 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 81.98 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 81.71 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 81.67 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 80.93 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 80.88 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 80.76 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 80.4 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 80.36 |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=280.57 Aligned_cols=267 Identities=15% Similarity=0.160 Sum_probs=224.1
Q ss_pred hHHHHHHHHHhhhcCCh------------h---HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDR------------D---TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHV 66 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDr------------D---T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~l 66 (604)
.+|--.++..++.+.|+ | ++++|.+.||.+|.+|+|++ +|+++.++....+|++|.+|++++++
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44555666666666544 2 99999999999999999999 89999999999999999999999999
Q ss_pred HHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHcc-CCChhHHHH
Q 007424 67 IATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVTMLKLLSDALFT-EQDTNAQVG 140 (604)
Q Consensus 67 LGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~sllkPL~eaL~~-eqdk~vQ~~ 140 (604)
|+++++|| .+.++|++||+.|+..|+||++.||.|||+|+|+|+..+.. ...|..++|++..++. .+++.||..
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ah 451 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAH 451 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHH
Confidence 99999999 88899999999999999999999999999999999999942 1245577776666654 457789999
Q ss_pred HHHHHHHHHhhcC-CCChhhHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC----
Q 007424 141 AALCLAATIDAAQ-DPDAGKLGRMEVRLERL-LKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS---- 213 (604)
Q Consensus 141 AA~cLaalIE~a~-d~i~~yL~~L~~RL~kl-L~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s---- 213 (604)
||.||..+.|... +.+.+||+.||.+++.+ +.++...+|..++.+|||+|. |+..|.|||+.+||.|..+|.+
T Consensus 452 Aa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 452 AAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK 531 (1075)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch
Confidence 9999999988764 55679999999955554 455577899999999999996 6678999999999999999963
Q ss_pred CcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcc---hhHHHHHHHHHHHH
Q 007424 214 QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK---VKVVREVMNKMIEA 269 (604)
Q Consensus 214 ~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDK---vK~VRda~~~AL~~ 269 (604)
+...+|.-.+|+++.||.++| +.|.|++..+++++-....+- =-+-|.-+..+...
T Consensus 532 d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~war 591 (1075)
T KOG2171|consen 532 DLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWAR 591 (1075)
T ss_pred hhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHH
Confidence 568999999999999999999 999999999999998774332 23444444444333
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=228.43 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
-+++.++.||.||.-+..+-++.+|+.|.+...++.|.+|+++|++||.+|||| .+.||||.++|++++.|.|--+-|
T Consensus 371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 789999999999999999889999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc
Q 007424 99 QATCISTVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~ 175 (604)
|..+||||++++.|+...+-..|++|+++.|+. +.+|.||.+||.|++.+.|.+++..+|||..++..|.++| .-
T Consensus 451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af--~k 528 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF--GK 528 (885)
T ss_pred eeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HH
Confidence 999999999999999876654588888887753 7899999999999999999999999999999999999999 45
Q ss_pred hhHHHH--HHHHHHHHHh-cCcCc--CCchHHHHHHHHhhhc---CCc---HHHHHHHHHHHHHHHHHcCcchhhhh---
Q 007424 176 FKAKAA--GLVVVGSVIG-SGAVD--GSGLKGLVSCLLGFLS---SQD---WAARKAAAEALWRLAVVEKDAVPEFK--- 241 (604)
Q Consensus 176 ~kaK~a--lLsaIGSiA~-ag~~f--~pyf~~lm~~L~e~L~---s~D---w~lRkaAaDaLg~LA~~~ge~f~py~--- 241 (604)
|+.|+. ++.|||.+|. +|.+. ..|.+-+||-|++.|. ++| |++ .++|.++|++.|+-|.||+
T Consensus 529 YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 529 YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHhccccccCHHH
Confidence 777766 7789999995 76544 3889999999999884 443 884 9999999999999999997
Q ss_pred -hHHHHHHH
Q 007424 242 -GKCLKIFE 249 (604)
Q Consensus 242 -~~~i~~Le 249 (604)
.+|.++++
T Consensus 605 y~Rc~~il~ 613 (885)
T KOG2023|consen 605 YQRCFRILQ 613 (885)
T ss_pred HHHHHHHHH
Confidence 56666666
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=129.61 Aligned_cols=245 Identities=16% Similarity=0.157 Sum_probs=188.2
Q ss_pred HHHHHHhhhcCChh------HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---ccc
Q 007424 7 TSVNGLLNKLSDRD------TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLS 77 (604)
Q Consensus 7 ~rvl~~L~KLsDrD------T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~ 77 (604)
=-++..|+|=++.| +++.|-.-|..+|+..--+-+|+.|..|.+.+++++|..|.+++++||-+-+|- -+.
T Consensus 322 P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt 401 (859)
T KOG1241|consen 322 PVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLT 401 (859)
T ss_pred HHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhh
Confidence 34677777743222 888888888888888777678999999999999999999999999999997777 788
Q ss_pred ccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---------------------h-------------------
Q 007424 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------A------------------- 117 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---------------------~------------------- 117 (604)
|..+.-+|.|++...||.-.||+++.|++|++++++.+. |
T Consensus 402 ~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 402 PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998740 0
Q ss_pred ---------hH-HHHHHHHHHHcc-----C-CChhHHHHHHHHHHHHHhhcCCCCh------------------------
Q 007424 118 ---------FV-TMLKLLSDALFT-----E-QDTNAQVGAALCLAATIDAAQDPDA------------------------ 157 (604)
Q Consensus 118 ---------~~-sllkPL~eaL~~-----e-qdk~vQ~~AA~cLaalIE~a~d~i~------------------------ 157 (604)
+. .|+.+++..|++ + ++-+...+|.-||-.+|.+.++..-
T Consensus 482 A~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~ 561 (859)
T KOG1241|consen 482 AAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILS 561 (859)
T ss_pred hccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01 155555555542 1 2345667777777777776544321
Q ss_pred ------------------------------hhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCCchHHHHH
Q 007424 158 ------------------------------GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVS 205 (604)
Q Consensus 158 ------------------------------~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~ 205 (604)
++...||.-|+++|+++ +.-+..-++.+|+.++. .|+.|..|++.+.|
T Consensus 562 ~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~p 641 (859)
T KOG1241|consen 562 LADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKP 641 (859)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 22233555566666663 44455667778887775 67888888888888
Q ss_pred HHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 206 CLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 206 ~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
.|..-|. ..|.++=.+|.-.+|.|+++.++.|.||.+.+..+|=.|
T Consensus 642 yL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 642 YLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 8888884 579999999999999999999999999998777766544
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-09 Score=126.78 Aligned_cols=268 Identities=18% Similarity=0.231 Sum_probs=196.4
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L 80 (604)
+.+|..+|.++-+=.-..-++-=.+.+-.+|+++=|++-|-+|..|.++..++++..|..+++.|..+.+.. -..||+
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~ 157 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL 157 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH
Confidence 356777777776622222344445566678888755599999999999999999999999999999999988 888999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cc----hhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhc
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVG-AS----AFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~----~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a 152 (604)
+.|++...+.+.||++.||-+++.|++.++.++. +. -+..+++-++..|-. ..|..+...+.-||..+.|..
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999994 32 244477778887732 223333344455555555555
Q ss_pred CCCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhc--------------------------------------
Q 007424 153 QDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGS-------------------------------------- 192 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~a-------------------------------------- 192 (604)
+.-+.++|..++.=.++..++. +-.+|-.+|..|-+++..
T Consensus 238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL 317 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc
Confidence 5545677777777666666666 445777777777776642
Q ss_pred -CcCc-------------------C-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 193 -GAVD-------------------G-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 193 -g~~f-------------------~-pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
.... + ..++.+++.+..+|.+.+|.-|+||.-+|+.++.-.++.+....+.++...=+.
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 0000 1 345667788888889999999999999999999855555555555555555444
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
=-|==+.||-||.-||..+
T Consensus 398 l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 4599999999988887765
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=117.46 Aligned_cols=194 Identities=11% Similarity=0.025 Sum_probs=93.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..|+.+|. +.++.+|.+++.+|+.+.. +.+++.+.+.++|+|+.||.+++++||+|...- .....
T Consensus 25 ~~~L~~~L~----d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD----DHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDN 90 (280)
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHH
Confidence 445555543 3344566666666555432 334444455556666666666666666654321 00112
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf 200 (604)
.++.|...+..+.++.|+..|+.+|..+..... .+.+.+.+.+..++.+++..++-+++.++| ..+.
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg---~~~~------ 157 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALS---VIND------ 157 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHh---ccCC------
Confidence 344444443455555566666666555432211 123444444555555555555555555444 2221
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
+..++.|..+|.++||.+|..|+.+||.+.....+.+. ..+..| .|....||..+..+|..
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~----~L~~~L----~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIRE----AFVAML----QDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHH----HHHHHh----cCCChHHHHHHHHHHHc
Confidence 23455556666666666666666666655111111111 123333 36666666666555544
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-09 Score=120.26 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=199.6
Q ss_pred cCChhHHHHHHHHHHHHHhhcCCCCh--HHHHHhhhhcCCCCCCchhHH-HHHHHHHHHhhh--cccccHHHHHHHHHhh
Q 007424 16 LSDRDTYSQAAKELDSIAATVDPTLL--PTFLSCILSTNSSDKPGVRKE-CIHVIATLSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 16 LsDrDT~r~A~~eLD~lA~~L~pe~i--p~fL~~L~e~~ss~kp~~RKa-aI~lLGvLae~h--~i~p~L~kIl~~Ivrr 90 (604)
..+-..++-|...+-.+...+.-+.+ ..||.-|.....+-+++.|++ +..++...+..- ...||+..++|.|+.-
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 34444555555566666666554443 456777777777778888776 444444443322 8999999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
+.|....||+|+.+|+-++...+.......++++++..|+.. ....-.++..-|..+.+.++..+.-+++.++|.+.+.
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev 303 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV 303 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH
Confidence 999999999999999999999985444445999999999644 4445567777788899999888888999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHhc-------------------------------C-cCc-----CCchHHHHHHHHhhhcC
Q 007424 171 LKSEVFKAKAAGLVVVGSVIGS-------------------------------G-AVD-----GSGLKGLVSCLLGFLSS 213 (604)
Q Consensus 171 L~s~~~kaK~alLsaIGSiA~a-------------------------------g-~~f-----~pyf~~lm~~L~e~L~s 213 (604)
|.+.+.++|.+.+.++--+-.+ + ..| .|-+.-++|.|..-|.+
T Consensus 304 l~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~e 383 (569)
T KOG1242|consen 304 LWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAE 383 (569)
T ss_pred HccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhh
Confidence 9999999998877765432221 1 112 25566667777777777
Q ss_pred CcHHHHHHHHHHHHHHHHHc--CcchhhhhhHHHHHHHhccCcchhHHHHHHHHHH-HHHHhCCCCC
Q 007424 214 QDWAARKAAAEALWRLAVVE--KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI-EAWKQVPDLS 277 (604)
Q Consensus 214 ~Dw~lRkaAaDaLg~LA~~~--ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL-~~wK~i~~~~ 277 (604)
.+...++.++..++-|+.-+ ...+.||..+.++-|+.--.|=++.||..+.+|| -+.|.+.-..
T Consensus 384 Rst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 384 RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 78888999999999999977 4799999999999999999999999999999999 5555555433
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=116.75 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
+...|..-|..+|+.--..-+.+.+..+.+...+++|..|.+++++||-+-+|- -+.|+.+..+|.|.....|+---
T Consensus 344 ~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~ 423 (858)
T COG5215 344 PSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLW 423 (858)
T ss_pred hhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceee
Confidence 777888888888886555447889999999999999999999999999997776 77889999999999999998888
Q ss_pred HHHHHHHHHHhhhhhhcc---c------------------h-----------------------hHH----HHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGA---S------------------A-----------------------FVT----MLKLLSDAL 129 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d---~------------------~-----------------------~~s----llkPL~eaL 129 (604)
|...++|++|++|+++.+ + | ..+ |..-++.+|
T Consensus 424 vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 999999999999999874 0 0 011 445555555
Q ss_pred cc-----CCChhHHHHHHHHHHHHHhhcCCCChhhH--------------------------------------------
Q 007424 130 FT-----EQDTNAQVGAALCLAATIDAAQDPDAGKL-------------------------------------------- 160 (604)
Q Consensus 130 ~~-----eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-------------------------------------------- 160 (604)
.+ .++-+...+++.+|..+|+..++.+.+.+
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~ai 583 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAI 583 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 42 45667888899999999988766543222
Q ss_pred ------------HHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 161 ------------GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 161 ------------~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
..||.-++++|++. ..-+..-++-+|++++. -|+.|..|.+.++|.|...|...|.++=..|+-.+
T Consensus 584 ir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 584 IRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred HHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 22555555666554 33344556778887775 67889999999999999999999999999999999
Q ss_pred HHHHHHcCcchhhhhhHHHHHHHhcc
Q 007424 227 WRLAVVEKDAVPEFKGKCLKIFESKR 252 (604)
Q Consensus 227 g~LA~~~ge~f~py~~~~i~~Le~cR 252 (604)
|.||...|..|.+|.+-....|-.|-
T Consensus 664 gdlantl~~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 664 GDLANTLGTDFNIYADVLMSSLVQCL 689 (858)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999877666665553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=110.22 Aligned_cols=217 Identities=15% Similarity=0.119 Sum_probs=149.8
Q ss_pred hhcCChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhh
Q 007424 14 NKLSDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRN 90 (604)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~Ivrr 90 (604)
..|.|.| .+..|+..|.. +..+. ++.+..++ .++++.+|++++.+||.+...-. ..++.++.+...
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~----~~~~~~~~~l~~ll----~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~~~L~~l 98 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQL----RGGQDVFRLAIELC----SSKNPIERDIGADILSQLGMAKR---CQDNVFNILNNL 98 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHh----cCcchHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCcc---chHHHHHHHHHH
Confidence 3446666 35555555543 34444 56655543 35578999999999999864210 156777778776
Q ss_pred -ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 91 -FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 91 -LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
++|+|+.||.+++.+||.+...... +...++..|..++ .+.++.|+.+|+.+|..+- + +..++-|+.
T Consensus 99 ~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~----~------~~ai~~L~~ 166 (280)
T PRK09687 99 ALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN----D------EAAIPLLIN 166 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC----C------HHHHHHHHH
Confidence 8999999999999999999654321 1223566666666 4668889999999995432 1 456778899
Q ss_pred HhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
+|++++..++..++.++|.+ +. .-+.+++.|...|.+.+|.+|+.|+.+||.+... +.+.+. ++.|+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~---~~----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~--~av~~L----i~~L~ 233 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSN---KY----DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK--RVLSVL----IKELK 233 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcC---CC----CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh--hHHHHH----HHHHc
Confidence 99999999999999999965 11 1236788888889999999999999999986542 344433 77777
Q ss_pred hccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 250 SKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 250 ~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
. -. ||-.+. .++.+|.+
T Consensus 234 ~----~~--~~~~a~---~ALg~ig~ 250 (280)
T PRK09687 234 K----GT--VGDLII---EAAGELGD 250 (280)
T ss_pred C----Cc--hHHHHH---HHHHhcCC
Confidence 3 22 565444 44555554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-09 Score=121.75 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=78.8
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhh
Q 007424 131 TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGF 210 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~ 210 (604)
.+.++.|+..|+.+|..+.... ....+.|.+++++++..+|.+++.++|.+ +.. ..+.+.|...
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~-----~~~~~~l~~a 815 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAEL---GCP-----PDDVAAATAA 815 (897)
T ss_pred cCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc-----chhHHHHHHH
Confidence 4555556655555555543321 11245677888888888998888888743 321 1234567888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 211 LSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 211 L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|.++||.+|.+|+++|+.+.. .+.+.+ .+..|+ |+...||.++..||..|
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~--~~a~~~----L~~~L~----D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA--DVAVPA----LVEALT----DPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc--cchHHH----HHHHhc----CCCHHHHHHHHHHHhcc
Confidence 888999999999999997653 133333 366676 99999999999999887
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-09 Score=115.33 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=173.9
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--- 115 (604)
|-.||.-|..-....+|.+||..-++|-.|-+.+ .+.|||+.|+.+.+++.+|+|-.|---||+=.-++|+.-+=
T Consensus 213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~ 292 (885)
T KOG2023|consen 213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEV 292 (885)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHH
Confidence 3445555544456678899999999999999999 89999999999999999999998866666666666665421
Q ss_pred -chhHH-HHHHHHHHH---------cc---C-------------------------------------------CChhHH
Q 007424 116 -SAFVT-MLKLLSDAL---------FT---E-------------------------------------------QDTNAQ 138 (604)
Q Consensus 116 -~~~~s-llkPL~eaL---------~~---e-------------------------------------------qdk~vQ 138 (604)
+|+-. +++-|+..| ++ | .+.+..
T Consensus 293 L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR 372 (885)
T KOG2023|consen 293 LQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR 372 (885)
T ss_pred HHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh
Confidence 11111 333333322 11 0 015677
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHH
Q 007424 139 VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 139 ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
..+|.+|+-+-.-.++ +.|+.++|-|-+.|.++..++|.+.+=|+|+||..+ ..|.||++.++|.|.++|.+.---
T Consensus 373 kCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkpl 449 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPL 449 (885)
T ss_pred hccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccc
Confidence 7777778776665555 678889999999999999999999999999999765 455699999999999999888888
Q ss_pred HHHHHHHHHHHHHHHc----C-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 218 ARKAAAEALWRLAVVE----K-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~----g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+|+++|.+|+..+.-+ + ++|.|.....++-+ .|+.|.|.||+--|.-++-+=++.
T Consensus 450 VRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l----lD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 450 VRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL----LDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred eeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999833 2 56777655555555 499999999999999888665543
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=111.32 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=195.4
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccccc
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~ 79 (604)
.+..-+..+|++.+|.+ -++.|....+.+...+++..+..||.-+..+....+|..+.+++-++|.++... -++-.
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 45566778899999887 577888889999999999887777766655555559999999999999998877 78889
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCCh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPDA 157 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~--a~d~i~ 157 (604)
+|.|+|.+...|.|..+.||.|+-.+|-.+++.+..+.+..+++-|+++| ++.+..+. -|++.+... ......
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l-~dp~~~~~----e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL-ADPSCYTP----ECLDSLGATTFVAEVDA 367 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-cCcccchH----HHHHhhcceeeeeeecc
Confidence 99999999999999999999999999999999986555555999999999 45442222 244444433 233334
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cC--cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG--AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag--~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+-|.-|+|=|-+-|...++..|..++..++=.+. ++ ....||++.++|.|..-+.+.+-++|-.|+-+|+.+-.-.|
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 6788889989999988888888777777776664 53 33459999999999999988899999999999999999887
Q ss_pred -cchhhhhhHHHHHHHhccCcchhHHHHHHHHHH
Q 007424 235 -DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 235 -e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL 267 (604)
+.|..... .++|.-+..|.-.=|.-.++.|
T Consensus 448 ~~~f~d~~p---~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 448 EVSFDDLIP---ELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred hhccccccc---HHHHhhccchhhhhhHHHhhhH
Confidence 56632223 3344444455444444444433
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-08 Score=117.46 Aligned_cols=209 Identities=16% Similarity=0.152 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|.+-+..|+..|-.++..+++ .+.++.+|. ++++.+|.+++.+|+.+..+- ...+++.|+|+|+.
T Consensus 665 d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~L~----~~d~~VR~~A~~aL~~~~~~~---------~~~l~~~L~D~d~~ 729 (897)
T PRK13800 665 AAAVRRAAAEGLRELVEVLPP--APALRDHLG----SPDPVVRAAALDVLRALRAGD---------AALFAAALGDPDHR 729 (897)
T ss_pred CHHHHHHHHHHHHHHHhccCc--hHHHHHHhc----CCCHHHHHHHHHHHHhhccCC---------HHHHHHHhcCCCHH
Confidence 333667777777777665544 234444443 356788888888877653211 01234556666666
Q ss_pred HHHHHHHHHHhhhhh------hccc----------------hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 98 LQATCISTVSSLSPR------VGAS----------------AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~------l~d~----------------~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
||.+++.+|+.+... +.+. .... .+..|...+ .+.++.|+..|+.+|..+...
T Consensus 730 VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~--- 805 (897)
T PRK13800 730 VRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT-GDPDPLVRAAALAALAELGCP--- 805 (897)
T ss_pred HHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCc---
Confidence 666666666654211 0010 0001 244555444 788899999999998877432
Q ss_pred CChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 155 PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+.+.+.+..+|++++..++.+++.++|.+ +. +..++.|...|.+++|.+|+.|+.+|+.+ .+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l---~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~ 867 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGA---AA------DVAVPALVEALTDPHLDVRKAAVLALTRW---PG 867 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhc---cc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CC
Confidence 22334588899999999999988888742 21 24568888899999999999999999996 11
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
+ ......|.....|.-+.||..+.+||+.
T Consensus 868 ~------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 868 D------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred C------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1 1223334444449999999999999974
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=100.66 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=133.4
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-------cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-------~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|..++..+.....+.+|..|.+++.-|-.++.++ .+.++|..++..|++.+.|..+.|-..|+.+++.|+..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555544456778999999998888886666 334456677789999999999999999999999999999
Q ss_pred ccc--hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH-HHHHHHHhcCCchhHHHHHHHHHHHH
Q 007424 114 GAS--AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM-EVRLERLLKSEVFKAKAAGLVVVGSV 189 (604)
Q Consensus 114 ~d~--~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L-~~RL~klL~s~~~kaK~alLsaIGSi 189 (604)
... ++.. ++++|+..+ ++.++.+...|..||..+++..+ +.+++ .+-+...+++.+.++|..++.++..+
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 652 2322 777788777 67788899999999999999864 44566 66777889999999999999999988
Q ss_pred Hh-cC---cCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc
Q 007424 190 IG-SG---AVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (604)
Q Consensus 190 A~-ag---~~f~--pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge 235 (604)
+. .+ ..+. .+++.+++.|..++.+.+-.+|.+|-.++..+....|+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 86 34 2222 34578999999999999999999999999999988774
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-07 Score=99.13 Aligned_cols=218 Identities=18% Similarity=0.176 Sum_probs=120.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
.++-++.++..|.....+++|++||.|++++.-+.... -..+.- +++.+.+.|.|+|+.|+.+|+.++..+ ..- +
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~ 183 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-D 183 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-H
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-c
Confidence 44445555555555555556666666666666665544 111111 455566666666666666666666655 110 0
Q ss_pred chhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 116 SAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 116 ~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
.....++.+++..|. +..++-.|.....+|..++... ...- ..+++.+..+|.+.+.. -+++++..+.
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~----~~~~~~~~~i~~l~~~l~s~~~~---V~~e~~~~i~ 256 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME----PEDADKNRIIEPLLNLLQSSSPS---VVYEAIRLII 256 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC----hhhhhHHHHHHHHHHHhhccccH---HHHHHHHHHH
Confidence 000023333333332 3445555544444443222111 1112 34555555555533322 2455555555
Q ss_pred hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 191 GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 191 ~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...... +....+++.|..+|.+.|+.+|-.|+++|..|+....+.+. ...-.+.-+++|.-..||-.+.+.|...
T Consensus 257 ~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 257 KLSPSP-ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp HHSSSH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred Hhhcch-HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 433221 25677899999999999999999999999999887643332 2233455777888899998766665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-06 Score=96.54 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCh-----HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC
Q 007424 21 TYSQAAKELDSIAATVDPTLL-----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~i-----p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD 93 (604)
-+++.+...+.+...|+...| ..++.-|+-+++++..... --+..||.++... -+.|||+.|+..|..+|+.
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn 810 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN 810 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence 367788899999998865432 4444444444444433222 2345677777766 7899999999999999999
Q ss_pred CChhHHHHHHHHHHhhhhhhccc-hhH--H-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGAS-AFV--T-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLE 168 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~-~~~--s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~ 168 (604)
+.+.||+-+++.++.|+--+... .+. . +=.-|.+.| ++..+.+-..--.||.+++...+ ...-+=...|+|||.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 99999999999999999887532 221 1 334566777 77788777666666666665532 111233467888999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchh
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVP 238 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~ 238 (604)
-.|++.+-|+..-.+..+|.|+--|.++.+.=++ +-=-|.+.|.+-.-..|.+|.+++|.||.++| |.+.
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLa 963 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLA 963 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence 9999999999999999999999766555432222 11235666666777889999999999999998 4444
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.2e-07 Score=100.60 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=149.8
Q ss_pred CCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 52 NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
.++.+|++||-||.++=-+..-| .+.|-+|++ ...|.|||++|..||+.++-.||..-.+ ++ .-|-|+|.-|
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPk-ny-L~LAP~ffkl 226 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQ-NY-LQLAPLFYKL 226 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCc-cc-ccccHHHHHH
Confidence 34779999999998888887777 888888765 7889999999999999998888877421 11 2355666555
Q ss_pred cc--CCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhc----C-cCcCCchH
Q 007424 130 FT--EQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGS----G-AVDGSGLK 201 (604)
Q Consensus 130 ~~--eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~a----g-~~f~pyf~ 201 (604)
+. .+|..... +-++.-++ .++.|.|+ +|+|.|..++++. .|...+..||-.++.+ | ........
T Consensus 227 lttSsNNWmLIK-----iiKLF~aL-tplEPRLgKKLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 227 LVTSSNNWVLIK-----LLKLFAAL-TPLEPRLGKKLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred HhccCCCeehHH-----HHHHHhhc-cccCchhhhhhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 54 34543211 12222222 22335554 4999999999664 5889999999998865 2 12234445
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
-+++-|..|+.++|..+|=.++-+|+.|+..+...++.+++-+++.|. ||-..|| .+||.++-.+.
T Consensus 299 LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~----DkD~SIR---lrALdLl~gmV 364 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD----DKDESIR---LRALDLLYGMV 364 (877)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc----cCCchhH---HHHHHHHHHHh
Confidence 678888999999999999999999999999999999999999999999 9999999 55666654443
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=89.80 Aligned_cols=223 Identities=14% Similarity=0.198 Sum_probs=145.5
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHH
Q 007424 10 NGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN 85 (604)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~ 85 (604)
+.+|+. +++|....+.+.|+.+...+++.. ++-+...|.....++++.+|.-+++.++.+++.. ....-+ ..+++
T Consensus 44 f~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 44 FDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 344442 467788888889999999998888 7899999999999999999999999999997655 222222 56899
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHH-----HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM-----LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sl-----lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
.|+..|.|+|..|..+|..+|..|+.+-. ....+ +.-|...+ ...+..+.....-++..+.. ..+...+++
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~-~S~~~~~~~ 198 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIAS-HSPEAAEAV 198 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 99999999999999999999999998642 22122 23333333 33344444332222222211 122223444
Q ss_pred HH--HHHHHHHHhcCCchhHHHHHHHHHHHHHhc----------------------------------------------
Q 007424 161 GR--MEVRLERLLKSEVFKAKAAGLVVVGSVIGS---------------------------------------------- 192 (604)
Q Consensus 161 ~~--L~~RL~klL~s~~~kaK~alLsaIGSiA~a---------------------------------------------- 192 (604)
.. +++.+++.|++++.-+|-.++..++.+|..
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 44 666666666666666666666666655531
Q ss_pred -C-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc-C-cch
Q 007424 193 -G-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE-K-DAV 237 (604)
Q Consensus 193 -g-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~-g-e~f 237 (604)
. ..+...++.++..|.+++.+.|-..|..|+|+||.|+... | +.+
T Consensus 279 ~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 279 VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 0 0000112334445555556789999999999999999833 5 444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=93.40 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
..|++.=.|..++. -+++.+....+.|.....++++..|-.|++.++.++. ...++.+++.|.+.|.|+++.||.
T Consensus 58 ~Krl~yl~l~~~~~-~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk 132 (526)
T PF01602_consen 58 LKRLGYLYLSLYLH-EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRK 132 (526)
T ss_dssp HHHHHHHHHHHHTT-TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred HHHHHHHHHHHHhh-cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHH
Confidence 55555544444333 1333356666777666777888888888888888774 335577788888888888888888
Q ss_pred HHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH
Q 007424 101 TCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (604)
Q Consensus 101 Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~ 180 (604)
+|+-++..+.....+.-...+++.|...| .+.++.++.+|+.++..+ ...++.....++.+..+|.+++..++.-.+.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~ 210 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQI 210 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence 88888888887753321111455555555 677888888888777777 2211111256777777888887777776666
Q ss_pred HHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhH
Q 007424 181 AGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 181 alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~ 258 (604)
.++..++.++... .... ..+++.+..+|.+.++.++-.|+.++..+.... +.+.......++.|. ++-..
T Consensus 211 ~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~lL~----s~~~n 282 (526)
T PF01602_consen 211 KILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-ELLQKAINPLIKLLS----SSDPN 282 (526)
T ss_dssp HHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHT----SSSHH
T ss_pred HHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-HHHHhhHHHHHHHhh----cccch
Confidence 6777666433211 1122 357788888888788888777777766443311 123333344455555 88888
Q ss_pred HHHHHHHHHHHH
Q 007424 259 VREVMNKMIEAW 270 (604)
Q Consensus 259 VRda~~~AL~~w 270 (604)
||-.+.++|..+
T Consensus 283 vr~~~L~~L~~l 294 (526)
T PF01602_consen 283 VRYIALDSLSQL 294 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred hehhHHHHHHHh
Confidence 998877776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-05 Score=86.65 Aligned_cols=257 Identities=20% Similarity=0.214 Sum_probs=193.4
Q ss_pred hhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccc--ccHHHHHHHHHhhc
Q 007424 14 NKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLS--PYITKIINSITRNF 91 (604)
Q Consensus 14 ~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~--p~L~kIl~~IvrrL 91 (604)
+-|+|.|++++++..|-.....--+-.++-+|.++.....+.++..|-..+--|+.+...-.+- +.|..++-.+-.+.
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka 267 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKA 267 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhc
Confidence 4478899999999988664444444358888999998999999999988877777665544333 67999999999999
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccch-hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASA-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRL 167 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL 167 (604)
+||+..+|.-|+..||.+++.+.+.. -| ..+.-++-.|.++.+..||--|..||..+.|-+. +++..|+-.+--|+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 99999999999999999999964321 11 1666666667667788899999999999999964 55678999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHh-cCcC----c------------------CC------------------------ch
Q 007424 168 ERLLKSEVFKAKAAGLVVVGSVIG-SGAV----D------------------GS------------------------GL 200 (604)
Q Consensus 168 ~klL~s~~~kaK~alLsaIGSiA~-ag~~----f------------------~p------------------------yf 200 (604)
-.++++...+++.+.+.+.|.++. +|+. | .| ||
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~ 427 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLF 427 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 999999999999999999998885 3321 1 02 11
Q ss_pred H----HHHHHHHhhhc-------------------------CCcH-HHHHHHHHHHHHHHHHcCcchhhhh--hHHHHHH
Q 007424 201 K----GLVSCLLGFLS-------------------------SQDW-AARKAAAEALWRLAVVEKDAVPEFK--GKCLKIF 248 (604)
Q Consensus 201 ~----~lm~~L~e~L~-------------------------s~Dw-~lRkaAaDaLg~LA~~~ge~f~py~--~~~i~~L 248 (604)
+ ..++..+.|.. +..| .+|.+|.-....+-..+-+..-+|+ .+....|
T Consensus 428 q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~l 507 (533)
T KOG2032|consen 428 QESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSL 507 (533)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Confidence 1 11222222221 2468 6677776666666665544444444 6778999
Q ss_pred HhccCcchhHHHHHHHHHHHHH
Q 007424 249 ESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 249 e~cRfDKvK~VRda~~~AL~~w 270 (604)
...+||--+.|++++.+|+++.
T Consensus 508 s~l~~dp~pev~~~a~~al~~l 529 (533)
T KOG2032|consen 508 STLWRDPRPEVTDSARKALDLL 529 (533)
T ss_pred HHHccCCCchhHHHHHHHhhhH
Confidence 9999999999999999999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-06 Score=99.54 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=149.8
Q ss_pred HHHHhhhhcCCCCC-CchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-----
Q 007424 43 TFLSCILSTNSSDK-PGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----- 116 (604)
Q Consensus 43 ~fL~~L~e~~ss~k-p~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~----- 116 (604)
.|++.|..++.+-+ +..|.+||.+|..|+..-.-..-|++|+|+++-.+.||+..||.+|+.||.++-....+-
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 34444444433444 367889999998887755444579999999999999999999999999999988877652
Q ss_pred -hhHHHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhc----------------CCCC------------hhhHHHHHHH
Q 007424 117 -AFVTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAA----------------QDPD------------AGKLGRMEVR 166 (604)
Q Consensus 117 -~~~sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a----------------~d~i------------~~yL~~L~~R 166 (604)
-|..|+-|-+..|..+ ....+.++=|.||+.+-+.+ .++. .+.|...+.+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQ 581 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHH
Confidence 2556888888888766 44557777777776654432 1111 1223333444
Q ss_pred -HHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhH
Q 007424 167 -LERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGK 243 (604)
Q Consensus 167 -L~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~ 243 (604)
+..+|..+...+|.+|+..|+-+-. -|.+- .-+-+++.|.-||.+.||.+|.+=.|.|.-++..+| ....+|
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey--- 656 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY--- 656 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH---
Confidence 4567777788899999999876653 34321 123578999999999999999999999999988777 334433
Q ss_pred HHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 244 CLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 244 ~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
++..|...=-|--..|=..|..+|..
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~ 682 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSI 682 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHH
Confidence 12222222235445554444444443
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-07 Score=74.69 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=50.2
Q ss_pred CchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhh
Q 007424 57 PGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (604)
Q Consensus 57 p~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~L 109 (604)
|.+|++++.+||.+++.+ .+.||++++++.++..|+|+++.||.+|++|||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998877 99999999999999999999999999999999976
|
... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.3e-06 Score=102.08 Aligned_cols=234 Identities=15% Similarity=0.177 Sum_probs=171.7
Q ss_pred hcCChhHHHHHHHHHHHHHhh-------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----cccccHH
Q 007424 15 KLSDRDTYSQAAKELDSIAAT-------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYIT 81 (604)
Q Consensus 15 KLsDrDT~r~A~~eLD~lA~~-------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~i~p~L~ 81 (604)
...+.|.+.-|+..|..++.+ + ....+|+|+.+|.. ++...++.++.+|+.++.+. .|.. .
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s~~iQ~~A~~~L~nLa~~ndenr~aIie--a 487 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SSEQQQEYAVALLAILTDEVDESKWAITA--A 487 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH--C
Confidence 345678888888888777743 2 33458888888873 45689999999999998655 1111 2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-hhH---HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~~~---sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
-.+|.+++.|+.++..++..|+++|+.|+.+-.+. ... ..++||++.| ...++.+|.-|+.+|..++...+.
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~--- 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADA--- 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccch---
Confidence 46778888999999999999999999999753211 111 2799999998 566888999999999999887543
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCC--chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGS--GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~p--yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
..++.++.+|.+++.+.+..++.++|.+...+.. ... -....++.|.+.|.+++-..++.|+.+|+.+...
T Consensus 564 ----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 564 ----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 2336678889999989998899999988764321 111 0135789999999999999999999999999862
Q ss_pred cC---------cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 233 EK---------DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 233 ~g---------e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
-. +.+.| ++..|....|+ ||..+..||..+
T Consensus 640 ~~d~~~avv~agaIpP----LV~LLss~~~~----v~keAA~AL~nL 678 (2102)
T PLN03200 640 RQDLCESLATDEIINP----CIKLLTNNTEA----VATQSARALAAL 678 (2102)
T ss_pred ChHHHHHHHHcCCHHH----HHHHHhcCChH----HHHHHHHHHHHH
Confidence 22 23444 47778766655 566666776554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-06 Score=81.37 Aligned_cols=172 Identities=14% Similarity=0.210 Sum_probs=123.0
Q ss_pred ChhHHHHHHHHHHHHHhhc-CCCChHHHHHh-------hhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATV-DPTLLPTFLSC-------ILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L-~pe~ip~fL~~-------L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~I 87 (604)
|=+.+.-|++.|..++..- +.+..+.|+.+ |.....+..+.+-+.++.+++.++... .+.||++.++|.+
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3337788999999998876 33334444444 445677777889999999999998877 8999999999999
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--CCCh---hhHHH
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--DPDA---GKLGR 162 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~--d~i~---~yL~~ 162 (604)
++++.|+...||++|..++-.|..++. ....++.+++.....+.++.+...++.+|..+++..+ .... ..++.
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 177 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQ 177 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHH
Confidence 999999999999999999999999972 1123546666665577888899999999999999977 2222 23688
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+.+-+.+++.+++..+|.++-.++..+..
T Consensus 178 l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 178 LVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887764
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.1e-06 Score=94.18 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=172.1
Q ss_pred hHHHHHhhhhcCCC---CCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCC-----------Ch--hHHHHH
Q 007424 41 LPTFLSCILSTNSS---DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDK-----------NS--ALQATC 102 (604)
Q Consensus 41 ip~fL~~L~e~~ss---~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDp-----------Ds--~VR~Ac 102 (604)
++.++..|.....- .....|-+++.+|+.+...+ .+.|-+.++..+|..+|... +. .++.--
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L 575 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL 575 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 55666666544222 34688999999999999888 88888888888888755331 11 266777
Q ss_pred HHHHHhhhhhhcc-chhHH-HHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh-cCCchhH
Q 007424 103 ISTVSSLSPRVGA-SAFVT-MLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKA 178 (604)
Q Consensus 103 ~~aLg~LAe~l~d-~~~~s-llkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL-~s~~~ka 178 (604)
|.+|+.+-+.... .+..+ -+--||--+|+. ..-.++.-|.+|..+++++++.....|.+.+.|=|..-| +...+++
T Consensus 576 c~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 576 CNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 7777777666632 12222 233333333343 233589999999999999999988899999999999999 5568888
Q ss_pred HHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhcc---
Q 007424 179 KAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKR--- 252 (604)
Q Consensus 179 K~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~--Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cR--- 252 (604)
=.++++.+|-++. .+..|.||.+.+|..|.++|+++ +-.++-+-+-+.|-||.+.|..|.+|.+.++..|..-.
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 8999999999996 56788999999999999999986 67888889999999999999999999999998887654
Q ss_pred -----Ccc---hhHHHHHHHHH
Q 007424 253 -----FDK---VKVVREVMNKM 266 (604)
Q Consensus 253 -----fDK---vK~VRda~~~A 266 (604)
||- |-.+|+++.+|
T Consensus 736 ~d~~~~~~~dYvd~LRe~~lea 757 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEA 757 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHH
Confidence 333 44567766665
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=77.12 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCC
Q 007424 59 VRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQ 133 (604)
Q Consensus 59 ~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eq 133 (604)
+||.++..|+.++.+- .+.+|+++||+.|++.+.|+|+-||-+||++|..++....+ .+..++..+|++|. .|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 6999999999998877 89999999999999999999999999999999999988732 22226777777774 588
Q ss_pred ChhHHHHHHHHHHHHH
Q 007424 134 DTNAQVGAALCLAATI 149 (604)
Q Consensus 134 dk~vQ~~AA~cLaalI 149 (604)
++.|+.+|.. |++++
T Consensus 81 d~~Vr~~a~~-Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAEL-LDRLL 95 (97)
T ss_pred chhHHHHHHH-HHHHh
Confidence 9999988865 55543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=87.47 Aligned_cols=254 Identities=15% Similarity=0.140 Sum_probs=181.7
Q ss_pred hHHHHHHHHHHHHHhhc----CCCChHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhcc
Q 007424 20 DTYSQAAKELDSIAATV----DPTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR 92 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L----~pe~ip~fL~-~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLk 92 (604)
+-++.|+.+|+.+++++ +-++|..+++ ...++..++....||.++..++.++-+- ...+|+.+|++-|+.-+.
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence 47899999999999998 2334888888 5588888999999999988777764443 566799999999999999
Q ss_pred CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCCh-h-hHHHHHHHH
Q 007424 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA-G-KLGRMEVRL 167 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~i~-~-yL~~L~~RL 167 (604)
|+|..||--||+++-.++.-. ++.+..++.-+|++|- .+.+.+|+.||-+ |++++......-. . .++.++|=|
T Consensus 95 D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeL-LdRLikdIVte~~~tFsL~~~ipLL 172 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAEL-LDRLIKDIVTESASTFSLPEFIPLL 172 (675)
T ss_pred CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHH-HHHHHHHhccccccccCHHHHHHHH
Confidence 999999999999999988765 3344457777777763 5778788876655 8888876432221 1 356666655
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHH
Q 007424 168 ERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKC 244 (604)
Q Consensus 168 ~klL~s~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~ 244 (604)
-+-+.-.+..++..+++-|.-+-.+-. .+..|++.+++.|-.+|+++.-++|..+=-+|+.+-..+. ..+..| .+.
T Consensus 173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~-~~~ 251 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY-DDM 251 (675)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc-ccc
Confidence 555555567788899988876555443 3458999999999999999999999988888888666443 233244 445
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
++++=..=---....+.-+..=|+-.=.|++.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 55554333334444555554444444445443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-05 Score=85.29 Aligned_cols=270 Identities=16% Similarity=0.164 Sum_probs=173.8
Q ss_pred CchHHHHHHHH-HhhhcCChh--HHHHHHHHHHHHHh-hcCCCChHHHHHhhhhcCCC-CCCchhHHHHHHHHHHHhhh-
Q 007424 1 MAHALKTSVNG-LLNKLSDRD--TYSQAAKELDSIAA-TVDPTLLPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH- 74 (604)
Q Consensus 1 m~~eLk~rvl~-~L~KLsDrD--T~r~A~~eLD~lA~-~L~pe~ip~fL~~L~e~~ss-~kp~~RKaaI~lLGvLae~h- 74 (604)
|..|.|+.|.. +|.-|.... -..+|.+.|-.||. .||....|-|+.-+....-. +....+.+++..+|..|+..
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~ 166 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA 166 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC
Confidence 45666766654 455565554 56789999999988 47888889998888665433 34477999999999999877
Q ss_pred --cccccHHHHHHHHHhhcc--CCChhHHHHHHHHHHhhhhhhcc--------------------ch-------------
Q 007424 75 --NLSPYITKIINSITRNFR--DKNSALQATCISTVSSLSPRVGA--------------------SA------------- 117 (604)
Q Consensus 75 --~i~p~L~kIl~~IvrrLk--DpDs~VR~Ac~~aLg~LAe~l~d--------------------~~------------- 117 (604)
.+...-..|+-.|+.+-. .+++.||-|++.+|..-..+... .+
T Consensus 167 Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 167 PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 344445566666665443 36678999998888763333221 00
Q ss_pred -----hHHHHHHHHHHHc----c----CCChhHHHHHHHHHHHHHhhcCCC--Chhh---------------HHHHHHHH
Q 007424 118 -----FVTMLKLLSDALF----T----EQDTNAQVGAALCLAATIDAAQDP--DAGK---------------LGRMEVRL 167 (604)
Q Consensus 118 -----~~sllkPL~eaL~----~----eqdk~vQ~~AA~cLaalIE~a~d~--i~~y---------------L~~L~~RL 167 (604)
.+.|++|.++..+ + .++..+..-|.-=-..++|.--|. ...| ...++|.|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 1114455444321 1 222222111111111222221110 0122 23488889
Q ss_pred HHHhcCC-------chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhh
Q 007424 168 ERLLKSE-------VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPE 239 (604)
Q Consensus 168 ~klL~s~-------~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~p 239 (604)
++||... +.....++-+|+.-.++..+.. .+.+++..+.+-+.+++|.-|-+|+-++|++..-.- +.+.+
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~ 404 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK 404 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH--hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence 9998652 2235556677888777754442 133455666666788999999999999999887544 68888
Q ss_pred hhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 240 FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
|-.+.++.+++--.|-+-.|.+.+..++..+-.
T Consensus 405 ~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 405 IVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred hHHhhhHHHHHhcccceeehhhHHHHHHHHHHH
Confidence 989999999999999999999999999887754
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=99.79 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=166.8
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---ccccc---HHHHHHHHHhh
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPY---ITKIINSITRN 90 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~---L~kIl~~Ivrr 90 (604)
+|....+.|+..|-.++.+-+++++++++..+. ++++..+..++.++|.+.... .+... -...++.+++.
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence 577789999999999999888888988887653 556788888999998885533 11111 13578899999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-hhhHHH-HH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGR-ME 164 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~-L~ 164 (604)
|+.++..++.-|++++..++..-.+.. .. ..++||+..| ...+..++..||.||..+..+..+.- ..++.. .+
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV 696 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI 696 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence 999999999999999999988543321 11 2799999999 45666799999999999987654432 233443 78
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhh
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE 239 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~p 239 (604)
+.|+++|++++..++..++.+++.++..+.. +.. ...++.|.++|.+..-..|..|+-+|..|..... +.|..
T Consensus 697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~ 774 (2102)
T PLN03200 697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA--EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD 774 (2102)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh--cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 8899999999999999999999999975522 221 2457889999998999999999999999998554 44554
Q ss_pred hh
Q 007424 240 FK 241 (604)
Q Consensus 240 y~ 241 (604)
|.
T Consensus 775 ~~ 776 (2102)
T PLN03200 775 SV 776 (2102)
T ss_pred HH
Confidence 54
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=89.72 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=166.4
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccc
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS 77 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~ 77 (604)
.++.++|..=.+...+--|+-.|-.||.. .+...+|.|+.++. ++...+|..|+-+||.++... .+.
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCChHHH
Confidence 45666666533355666677778888873 24444899999987 456689999999999996544 111
Q ss_pred cc--HHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhcc-chhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 78 PY--ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGA-SAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 78 p~--L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d-~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
.| =..+|+.+...|..++. ...+-+.|+|..|+..--- +++.. +|+-|... +.+.|..|..=||.||.-+.+
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l-l~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL-LHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhc
Confidence 11 12345556666666665 4555667999999998732 23322 33333333 367899999999999999999
Q ss_pred hcCCCChhh-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhc-CCcHHHHHHHHHHH
Q 007424 151 AAQDPDAGK-LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLS-SQDWAARKAAAEAL 226 (604)
Q Consensus 151 ~a~d~i~~y-L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~-s~Dw~lRkaAaDaL 226 (604)
+..+.+--. -..++|||.++|.++..++...+|-+||-|+..-....+.+ ...+|+|..+|+ +..-..||.||.+|
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 876655222 23499999999999999999899999998553322222111 236788888888 44555999999999
Q ss_pred HHHHHHcCcchh-----hhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 227 WRLAVVEKDAVP-----EFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 227 g~LA~~~ge~f~-----py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
+-|..--.+.+. ......+.+|++.=|| .|-.|.-||.
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~----~rKEAawaIs 389 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFD----IRKEAAWAIS 389 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchH----HHHHHHHHHH
Confidence 998871111111 1224457888866654 4444444444
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.6e-05 Score=81.98 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC-CCCCCchhHHHHHHHHHHHhhh--ccccc
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH--NLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~-ss~kp~~RKaaI~lLGvLae~h--~i~p~ 79 (604)
++.++++.....-.|..++..+.+.|=.++.-++.+. +..+|..+.+.. ....+..|..++..+.-+..+- --.|.
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~ 268 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL 268 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch
Confidence 4555666666665666666666666666777665554 666666665554 4445566777777775554444 33455
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
-.+++..++..|.| +.+...++++++.|..... +.| .. ...| .|--+.. --+
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~------------~~l-~~--------~~~a---~vklLyk--QR~ 320 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSD------------DVL-NK--------ENHA---NVKLLYK--QRF 320 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH------------Hhc-Cc--------cccc---hhhhHHh--HHH
Confidence 66666666666655 4455555555555544421 001 00 0000 0000000 024
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 160 L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
+..++|+|++.++..+-..|...+.|+..+.. +-.. ..++++.++|.|.+.|..+|..+|.+++++|..+.....+.+
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 56688888888887776688888888888885 4433 349999999999999999999999999999999999888999
Q ss_pred hhhhhHHHHHH
Q 007424 238 PEFKGKCLKIF 248 (604)
Q Consensus 238 ~py~~~~i~~L 248 (604)
.+|....+..|
T Consensus 401 ~~hl~sLI~~L 411 (415)
T PF12460_consen 401 SEHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHHH
Confidence 99988888766
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.8e-05 Score=83.22 Aligned_cols=265 Identities=14% Similarity=0.146 Sum_probs=195.9
Q ss_pred HHHHHHhhhc-CChh-HHHHHHHHHHHHHhhcCCC---C--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccc
Q 007424 7 TSVNGLLNKL-SDRD-TYSQAAKELDSIAATVDPT---L--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS 77 (604)
Q Consensus 7 ~rvl~~L~KL-sDrD-T~r~A~~eLD~lA~~L~pe---~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~ 77 (604)
..+..+|-|| +|.| +-+-|++.||.+.+.+..+ + ++.|++.|.+-....+|..|..-+.-|-+|=..- .+.
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 4456677777 4766 8899999999999998322 2 7999999999988889999999999999984444 666
Q ss_pred ccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH----HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007424 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~----sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~ 153 (604)
.|+|.+++-+.+.|.|+...||..|-.+++.+-..+...|.. ....-|...+ +.+++-+|..|-.=+..+|.-.+
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999998887776543322 1344444444 46678899888777888888888
Q ss_pred CCChhhHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHh-cCcCc---CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 154 DPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVVVGSVIG-SGAVD---GSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 154 d~i~~yL~~L~~RL~klL~s~~~k-aK~alLsaIGSiA~-ag~~f---~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
.+.+.|+..++..++.++.+...+ +|.......+.+-. ++..+ .--+..+|..|..+|+++.-++|.++.+=+..
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 888999999999999999877554 55444333333221 11111 12345899999999999999999999999999
Q ss_pred HHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 229 LAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 229 LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+-.-.+ +.+- +.+++-..|=.--.|.=- +.+..+|.+...|...
T Consensus 363 l~~~~p~ql~~-h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 363 LYHKAPGQLLV-HNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS 407 (675)
T ss_pred HHhhCcchhhh-hccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence 888555 6554 444443333322234433 4577888888887744
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00017 Score=80.92 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=148.6
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcC-CCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccH
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-PTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~-pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L 80 (604)
+|.+..+..|. ..+..--++.+|..-+..-+ -+. .+.++.|+... +...=..+..+|..+-.......-+
T Consensus 3 ~~~~~~l~~l~---~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~~~~l~ 75 (503)
T PF10508_consen 3 EWINELLEELS---SKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALSPDSLL 75 (503)
T ss_pred hHHHHHHHHHh---cccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccCHHHHH
Confidence 34444444433 33555555666666444433 222 35577777744 2233345556666665544333348
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~----~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+.+.+.+.++|..|++.||.-|++++++++.+-... ..+.+++.++..| .+.+..+...|+.+|..+...-
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~---- 150 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHP---- 150 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCc----
Confidence 999999999999999999999999999998764221 1223777788888 6778889999999999998742
Q ss_pred hhhHHHH-----HHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 157 AGKLGRM-----EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 157 ~~yL~~L-----~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~--~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
+++..| ...|..++..++-.+|--+++++..++........+.. .+++.+...|.++|--+|..|+|+|+.|
T Consensus 151 -~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 151 -EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred -hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 233334 78888888886666666688888877765433333333 3788888899999999999999999999
Q ss_pred HH
Q 007424 230 AV 231 (604)
Q Consensus 230 A~ 231 (604)
|.
T Consensus 230 a~ 231 (503)
T PF10508_consen 230 AE 231 (503)
T ss_pred Hc
Confidence 98
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=66.33 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=70.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
|+.|+..|.. ++++.+|.+++.+||.+ .-++.++.+++.|+|+++.||.+|+++||.+... .
T Consensus 1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~-------~ 62 (88)
T PF13646_consen 1 IPALLQLLQN---DPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDP-------E 62 (88)
T ss_dssp HHHHHHHHHT---SSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH-------H
T ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-------H
Confidence 4666776643 56789999999999933 2347789999999999999999999999999654 4
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHH
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLA 146 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLa 146 (604)
.+..|.+.|..+.+..++..|+.+|+
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888866667778888888874
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00065 Score=81.20 Aligned_cols=258 Identities=19% Similarity=0.209 Sum_probs=183.0
Q ss_pred HHHHHHHhhhc-CChh---HHHHHHHHHHH---HHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh--h--
Q 007424 6 KTSVNGLLNKL-SDRD---TYSQAAKELDS---IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--H-- 74 (604)
Q Consensus 6 k~rvl~~L~KL-sDrD---T~r~A~~eLD~---lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~--h-- 74 (604)
-..+...+..+ +|-| -....++.||. +|...+.+++..++.......++..+.++|-+.++|+.++.. .
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~ 689 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEG 689 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhh
Confidence 33444444444 3443 23344455554 555667777888887777777777889999999999999777 3
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc--cCCChhHHHHHHHHHHHHH--h
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATI--D 150 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~--~eqdk~vQ~~AA~cLaalI--E 150 (604)
++..++.-|...+...+++....+|...+.+|-.|-+.+..-..+.+.+.+-|+++ .+.+-.....|+.||.-++ .
T Consensus 690 ~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~ 769 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQ 769 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999887741112235556666665 3445567778888887776 3
Q ss_pred hc----CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHH
Q 007424 151 AA----QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAE 224 (604)
Q Consensus 151 ~a----~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaD 224 (604)
.. .++....+++.+.-|...|-.+....++.-|-+++.+.+- +.. ..+++..++..+..||++..-+.|++|+.
T Consensus 770 ~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~ 849 (1176)
T KOG1248|consen 770 SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIG 849 (1176)
T ss_pred hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 32 2222446777777777777666666666658888888753 222 23899999999999999999999999999
Q ss_pred HHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHH
Q 007424 225 ALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVM 263 (604)
Q Consensus 225 aLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~ 263 (604)
.|..+....+ ..+.+|.+.++..+=.-=-|+=-+||-.+
T Consensus 850 fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 850 FIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988777 67777775555555444446444444443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=88.09 Aligned_cols=220 Identities=19% Similarity=0.204 Sum_probs=155.6
Q ss_pred HHHHHHHHHhhcC-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHH
Q 007424 25 AAKELDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQAT 101 (604)
Q Consensus 25 A~~eLD~lA~~L~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~A 101 (604)
-.+||=.||..|. |+-+--||+.-- .+--|..||.+.-=||.++.-. .+.||+++++|-+.|-==|||..||+|
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~a 1017 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDA 1017 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHH
Confidence 3579999999995 555888887653 3445889999999999998888 999999999999999999999999998
Q ss_pred HHHHHHhhhhhhccc-h--hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHhcCCchh
Q 007424 102 CISTVSSLSPRVGAS-A--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 102 c~~aLg~LAe~l~d~-~--~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~klL~s~~~k 177 (604)
--.--+.|...-... . +..++.-|+..| ++...-|..++|+||.-++++=+ +.+.+.+++|-..+++..++=.--
T Consensus 1018 M~sIW~~Li~D~k~~vd~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1018 MTSIWNALITDSKKVVDEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666665442100 0 111455555555 57778899999999999999843 334677888888888888543333
Q ss_pred HHHH---HHHHHHHHHh-cCcC-cCCchHHHHHHHHhhh-----cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHH
Q 007424 178 AKAA---GLVVVGSVIG-SGAV-DGSGLKGLVSCLLGFL-----SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKI 247 (604)
Q Consensus 178 aK~a---lLsaIGSiA~-ag~~-f~pyf~~lm~~L~e~L-----~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~ 247 (604)
+|.| +..+++.+.. ++.. .+--...++..+.+|| .+.--++|+.++-+|..|+...|..+.||....|..
T Consensus 1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPL 1176 (1702)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHH
Confidence 5555 3445554442 2211 1122233444444444 256689999999999999999998888887555444
Q ss_pred H
Q 007424 248 F 248 (604)
Q Consensus 248 L 248 (604)
|
T Consensus 1177 l 1177 (1702)
T KOG0915|consen 1177 L 1177 (1702)
T ss_pred H
Confidence 3
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00044 Score=72.42 Aligned_cols=207 Identities=19% Similarity=0.206 Sum_probs=129.2
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
..++.-.++.+++.......+..+..++..+. +.++.+|..+...+|.+.. ...++.+.+.|.|.++.
T Consensus 22 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~----~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~ 89 (335)
T COG1413 22 EAAAALQALAELDDLILELAPEAADELLKLLE----DEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPR 89 (335)
T ss_pred hhhHHHHHHhccchhhcccchhhHHHHHHHHc----CCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHH
Confidence 33344344444444444443233555554444 4477889998888776543 45566777889999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch-
Q 007424 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF- 176 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~- 176 (604)
||.+++++||.+.... .+++|+..|..+.+..+...|+.+|..+.+.- -+..++.+++++..
T Consensus 90 vr~~a~~aLg~~~~~~-------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~ 152 (335)
T COG1413 90 VRDAAADALGELGDPE-------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSG 152 (335)
T ss_pred HHHHHHHHHHccCChh-------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhh
Confidence 9999999999987663 68888888855678889999999998776532 13334444443321
Q ss_pred -----------hHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHH
Q 007424 177 -----------KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 177 -----------kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i 245 (604)
.++.+++.+++ ..|. +..++.+++++.+.+..+|.+|+.+|+.+.... ........
T Consensus 153 ~a~~~~~~~~~~~r~~a~~~l~---~~~~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~ 219 (335)
T COG1413 153 SAAAALDAALLDVRAAAAEALG---ELGD------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLV 219 (335)
T ss_pred hhhhhccchHHHHHHHHHHHHH---HcCC------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHH
Confidence 23333333333 2222 234566777777777888888888888766543 11112234
Q ss_pred HHHHhccCcchhHHHHHHHHHHHHH
Q 007424 246 KIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 246 ~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.++ |---.||-++..+|...
T Consensus 220 ~~~~----~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 220 KALS----DESLEVRKAALLALGEI 240 (335)
T ss_pred HHhc----CCCHHHHHHHHHHhccc
Confidence 4444 77788887777766554
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0011 Score=77.71 Aligned_cols=246 Identities=15% Similarity=0.202 Sum_probs=174.8
Q ss_pred HHHHHHhhcCC--------CChHHHHHhhhhcCCCC--CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC
Q 007424 28 ELDSIAATVDP--------TLLPTFLSCILSTNSSD--KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 28 eLD~lA~~L~p--------e~ip~fL~~L~e~~ss~--kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD 95 (604)
.|.....++|| ..++.|+..+.+++.-+ ....|=+++-.++.+-.-+ ++-++=..|+.++.-.|.-+-
T Consensus 108 ~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R 187 (1233)
T KOG1824|consen 108 GLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPR 187 (1233)
T ss_pred HHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChH
Confidence 35556666765 33688888887775543 3456777777777664444 666677778888888888888
Q ss_pred hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC---CC-hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE---QD-TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e---qd-k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
..||.=++.++|.++..+.+ .++.-+++.|+.+ .. ...-..-..||++++..++.....++++++|-+....
T Consensus 188 ~aVrKkai~~l~~la~~~~~----~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~ 263 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCNR----DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC 263 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence 89999999999999999743 2444445554322 22 2233455678999999988888888888888888777
Q ss_pred ---cCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC--------------------------------C-
Q 007424 172 ---KSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS--------------------------------Q- 214 (604)
Q Consensus 172 ---~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s--------------------------------~- 214 (604)
+.++-..+...|.+++++.. --.+..||.+.++..+.+|++- +
T Consensus 264 ~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD 343 (1233)
T KOG1824|consen 264 NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDED 343 (1233)
T ss_pred cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccc
Confidence 67788899999999999885 3456679999999999998830 0
Q ss_pred -cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHH-HHHHHhCCCCC
Q 007424 215 -DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKM-IEAWKQVPDLS 277 (604)
Q Consensus 215 -Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~A-L~~wK~i~~~~ 277 (604)
.|-+|.+|+-+|..+-..-.|.+..+-...-.++=.+=-|+-..|+--+.+| ++++|+++..-
T Consensus 344 ~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 344 MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 2999999999999987755566655543333333222226677788666665 57788887654
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.2e-05 Score=90.12 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=173.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHH-HHHHHHH--Hhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 41 LPTFLSCILSTNSSDKPGVRKEC-IHVIATL--SNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaa-I~lLGvL--ae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
+-.|+..|.--..+++|-.|+++ |=+|.++ +.-+ -+.-++++|...-.+.|.|.|--+++.|+.+||.+=+-...+
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 56667777666788999999985 4566665 3334 777899999999999999999999999999998653322111
Q ss_pred hhHHHHHHHHHHHc--------------------------------------------------------cC-CChhHHH
Q 007424 117 AFVTMLKLLSDALF--------------------------------------------------------TE-QDTNAQV 139 (604)
Q Consensus 117 ~~~sllkPL~eaL~--------------------------------------------------------~e-qdk~vQ~ 139 (604)
-..+++.-|++.|. .+ .-.+-..
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 11112222222221 11 1234457
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHH
Q 007424 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~l 218 (604)
|||--+.++.+.+.+.+.||+++|+|||++.==+|+.+++.+..+--+.++.-. ....-|++.++.-|..-|++.+|-+
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 899999999999999999999999999999998999999999888888877643 3334899999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-----CcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 219 RKAAAEALWRLAVVE-----KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 219 RkaAaDaLg~LA~~~-----ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
|-++|-||.-|-.-. .|.+..|-....+++. |==-.||+|+-.|...+-.|-
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD----DIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD----DIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987732 2455556677777776 555679999999988876643
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=69.66 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHH-hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchh
Q 007424 179 KAAGLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVK 257 (604)
Q Consensus 179 K~alLsaIGSiA-~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK 257 (604)
|.+.+-++++++ ..+....+|++.+|+.+..+++++||.+|-.|+|+|+.|+.+.++.+-+|...+...|-..=.|--.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 334444555554 4555667999999999999999999999999999999999999877777889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 007424 258 VVREVMNKMIEAWKQ 272 (604)
Q Consensus 258 ~VRda~~~AL~~wK~ 272 (604)
.||.++..--+++|+
T Consensus 83 ~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 83 NVRSAAELLDRLLKD 97 (97)
T ss_pred hHHHHHHHHHHHhcC
Confidence 999998776666663
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0011 Score=77.74 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=145.1
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhh
Q 007424 12 LLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRN 90 (604)
Q Consensus 12 ~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~Ivrr 90 (604)
...-|.|.++.--|+ .|..|..--.++-++.++..|.....+.+|++||.|++++.-+-... -+.+ -..+++.+.+.
T Consensus 110 l~KDl~d~Np~IRaL-ALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-~~~~~~~L~~L 187 (746)
T PTZ00429 110 FLQDTTNSSPVVRAL-AVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-QQDFKKDLVEL 187 (746)
T ss_pred HHHHcCCCCHHHHHH-HHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-ccchHHHHHHH
Confidence 333445555332222 24444444455557888888888888899999999999999986544 1111 12455667777
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhcc-----------------------c-----------h-hH----HHHHHHHHHHcc
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGA-----------------------S-----------A-FV----TMLKLLSDALFT 131 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d-----------------------~-----------~-~~----sllkPL~eaL~~ 131 (604)
|.|+|+.|...|+.+|-.+.+...+ + | .. .++.-+...| .
T Consensus 188 L~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~L-q 266 (746)
T PTZ00429 188 LNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRM-S 266 (746)
T ss_pred hcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-c
Confidence 9999999999998888888654210 0 0 00 0111122222 2
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcC------------
Q 007424 132 EQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDG------------ 197 (604)
Q Consensus 132 eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~------------ 197 (604)
+.++.|..+|+-++-.+....+... ..++.+|..-++.|+ +.+..+|-.++..|-.+++.- ..|.
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~D 345 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSD 345 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCC
Confidence 4556666666666554443221111 112222223333333 333445555555555444321 1111
Q ss_pred ------------------CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHH
Q 007424 198 ------------------SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVV 259 (604)
Q Consensus 198 ------------------pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~V 259 (604)
--+..++.-|.+|+++.|-+.|..|+.+||.+|.-.. ..+.+|++.|-..=-+++..|
T Consensus 346 p~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~----~~a~~cV~~Ll~ll~~~~~~v 421 (746)
T PTZ00429 346 PPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD----SVAPDCANLLLQIVDRRPELL 421 (746)
T ss_pred cHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCchhH
Confidence 1134567778888888899999999999999997543 345666666654433566566
Q ss_pred HHHHHHHHHHHHhCCC
Q 007424 260 REVMNKMIEAWKQVPD 275 (604)
Q Consensus 260 Rda~~~AL~~wK~i~~ 275 (604)
-+++...-.+.+..|.
T Consensus 422 ~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 422 PQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHCcc
Confidence 5655444444454443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00024 Score=83.64 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=157.3
Q ss_pred CCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhh
Q 007424 37 DPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (604)
Q Consensus 37 ~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~ 112 (604)
++.. ++-+-..+.....+.+|..|++++.-+--..+.. ....+..-+...+--+++|.+..|-.-++..|..||.-
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 4444 4555556666677899999999998887776665 66778888888888999999999999999999999988
Q ss_pred hccc--hhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007424 113 VGAS--AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (604)
Q Consensus 113 l~d~--~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSi 189 (604)
+... ++.. .++.|++.+ .+..+.+...+--|++++++. --|..+++-++.++++.+.++|.-+...+.-.
T Consensus 326 lr~~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred cchhhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 8542 3333 788888888 677888999999999999983 24788999999999999999998877766655
Q ss_pred Hh-cCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 190 IG-SGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 190 A~-ag~~--f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
.. -+.. +..-...++|.+.....+.+-++|++|.++++.|..++| +.|.-|
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 54 3322 335566788888888889999999999999999999999 566655
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0016 Score=68.21 Aligned_cols=190 Identities=21% Similarity=0.285 Sum_probs=107.0
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCC------------hhHHHHHHH
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKN------------SALQATCIS 104 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpD------------s~VR~Ac~~ 104 (604)
++..+++++.++.. +++..+|..+.++||.+.....+.| ++.-++|.. ..||.++..
T Consensus 103 ~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a~~~--------l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 DPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERALDP--------LLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred ChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhhhHH--------HHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 44446666666654 4455677777777776655442222 222223322 246666666
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHH
Q 007424 105 TVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLV 184 (604)
Q Consensus 105 aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLs 184 (604)
+++.+.+.- ...+|.+.+ .+.+..++..|+.+|..+.... ..+.+.+.+++.+++..++...+.
T Consensus 172 ~l~~~~~~~-------~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 172 ALGELGDPE-------AIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALL 235 (335)
T ss_pred HHHHcCChh-------hhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence 666665552 455566665 4555567777777776666543 455567777777777777666555
Q ss_pred HHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHH
Q 007424 185 VVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMN 264 (604)
Q Consensus 185 aIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~ 264 (604)
++| ..|. ...+..+..++.+++|.+|..+...++ +..........+..+ +|-...||-.+.
T Consensus 236 ~l~---~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~----~~~~~~~~~~~~ 296 (335)
T COG1413 236 ALG---EIGD------EEAVDALAKALEDEDVILALLAAAALG------ALDLAEAALPLLLLL----IDEANAVRLEAA 296 (335)
T ss_pred Hhc---ccCc------chhHHHHHHHHhccchHHHHHHHHHhc------ccCchhhHHHHHHHh----hcchhhHHHHHH
Confidence 555 2221 244566666666677777666666665 111111112223333 366777777777
Q ss_pred HHHHHHHh
Q 007424 265 KMIEAWKQ 272 (604)
Q Consensus 265 ~AL~~wK~ 272 (604)
.+++..++
T Consensus 297 ~~l~~~~~ 304 (335)
T COG1413 297 LALGQIGQ 304 (335)
T ss_pred HHHHhhcc
Confidence 77766654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00035 Score=78.15 Aligned_cols=250 Identities=12% Similarity=0.159 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhhc-CCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccc-cHHHHHHHHHhhccC
Q 007424 21 TYSQAAKELDSIAATV-DPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSP-YITKIINSITRNFRD 93 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p-~L~kIl~~IvrrLkD 93 (604)
..|.++=.|-.|-++- |+.. +.++|+.|.--..+.++.+...+.-++..|+.+- .+.- ---.++|.++..|.-
T Consensus 211 ~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 211 MLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 5677777777777776 3222 5666666666666777788888888888887655 1111 123566777778888
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLE 168 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~ 168 (604)
++..|+-.|+.++|.++..-..+.... +|+-|...|......++..-||..+-.++.+....+-.++. -|+|-|+
T Consensus 291 ~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li 370 (514)
T KOG0166|consen 291 SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLI 370 (514)
T ss_pred CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHH
Confidence 888888888888888776654332222 44444444432445556777999998888765544433332 3899999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcCcCc-CCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch---hhhh
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV---PEFK 241 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f---~py~ 241 (604)
.+|.+..|+.|.-+.=||+-+...|..- ..|+-. +|+.+.+.|+-.|-.+=..+.|+|+.|-.+.. +.- .+|.
T Consensus 371 ~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~ 450 (514)
T KOG0166|consen 371 NLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLA 450 (514)
T ss_pred HHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 9999999999988888888655444311 255533 68888889988888888899999999877543 111 3343
Q ss_pred -----hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 242 -----GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 242 -----~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...+..+|.+++-.--.+.+.+..-|+.+
T Consensus 451 ~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 451 IMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 33466777778777777888877777776
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=78.17 Aligned_cols=224 Identities=16% Similarity=0.190 Sum_probs=149.9
Q ss_pred HHHHHH-HHHHHhhcCCCChHHHHHhhhhcCC--------CCCCchhHHHHHHHHHHHhhh-c---ccccHHHHH-HHHH
Q 007424 23 SQAAKE-LDSIAATVDPTLLPTFLSCILSTNS--------SDKPGVRKECIHVIATLSNSH-N---LSPYITKII-NSIT 88 (604)
Q Consensus 23 r~A~~e-LD~lA~~L~pe~ip~fL~~L~e~~s--------s~kp~~RKaaI~lLGvLae~h-~---i~p~L~kIl-~~Iv 88 (604)
..|+.. |-.++.-=-.+.||.+|+.+.+-.. ..++..+..|++.+|.||+.- . ...+|+.|+ ++|.
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 334433 3444443345567777776655433 345667778999999999766 3 334577665 4777
Q ss_pred hhccCCChhHHHHHHHHHHhhh-hhhccch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC---CChhhHHHH
Q 007424 89 RNFRDKNSALQATCISTVSSLS-PRVGASA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD---PDAGKLGRM 163 (604)
Q Consensus 89 rrLkDpDs~VR~Ac~~aLg~LA-e~l~d~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d---~i~~yL~~L 163 (604)
=-+++|-..+|.=||+.+++++ ....++. +...+......|.++++-.|+.-||.||..+|.+... .+.+.++.+
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 8889999999999999999999 4444433 3336777777776677888999999999999998653 356889999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhh----c------CCcHHHHHHHHHHHHHHHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFL----S------SQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L----~------s~Dw~lRkaAaDaLg~LA~~ 232 (604)
|+.|+++.+.-... .+..++-.++. -+.+..||...+++.|.+.. . +.+-..--+|.-+|.+|-++
T Consensus 549 mq~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti 625 (1010)
T KOG1991|consen 549 MQELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI 625 (1010)
T ss_pred HHHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence 99999998654332 34456666664 45666799999888886643 1 12344445666666666652
Q ss_pred c------CcchhhhhhHHHHHHH
Q 007424 233 E------KDAVPEFKGKCLKIFE 249 (604)
Q Consensus 233 ~------ge~f~py~~~~i~~Le 249 (604)
+ ++.+......|+.++.
T Consensus 626 l~s~e~~p~vl~~le~~~l~vi~ 648 (1010)
T KOG1991|consen 626 LLSLENHPEVLKQLEPIVLPVIG 648 (1010)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
Confidence 2 2445544455555443
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.7e-05 Score=64.49 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=81.0
Q ss_pred ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 40 ~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
.++.++.++.+. ++..|+.++.+|+.++... .....+. .+++.+++.|.|+++.|+..|+++|+.|+......
T Consensus 8 ~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 478888888654 3799999999999998763 2233344 78889999999999999999999999999875321
Q ss_pred h--hHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 117 A--FVT--MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 117 ~--~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
. +.. +++-|+..| .+.+..++..|+.+|..+++
T Consensus 84 ~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 1 111 677777777 55577899999999988764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00061 Score=66.14 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=91.9
Q ss_pred CCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCCh
Q 007424 56 KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDT 135 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk 135 (604)
+|.+|-.++.++|-||--| ...+++.++.+.+.|+|+++.||..|+..|..|...-.-.....++.-++..| .|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~--~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY--PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC--cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCCCH
Confidence 4678999999999998888 33345556678899999999999999999999865421111112445555555 68899
Q ss_pred hHHHHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC
Q 007424 136 NAQVGAALCLAATIDAA-QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS 213 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a-~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s 213 (604)
.++..|..++..+.... +..+...+++++-.|-....++.+ +.....-+..++..|.+++..
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~----------------~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVY----------------GPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccc----------------cccCHHHHHHHHHHHHHHcCc
Confidence 99999999999888873 333344555555544444433332 111113345667777777763
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0034 Score=73.80 Aligned_cols=147 Identities=16% Similarity=0.075 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
++.++..|.+.|.|+++.||.+|+.++..+-..-.+- +...++.-|.+ |+.|.++.|+..|..+|..+.+..++. ..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~ 215 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVNDYGSEK-IE 215 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHHHhCchh-hH
Confidence 3444445555555555555555555555553322110 00113333333 224555555555555555554433221 12
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.....+.+|+..|..-+--.+-.++.++.. -..........++..+.++|.+.+-.+--+|+-++..++.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 233333444444432222222333333321 1000012233566666666666666666666666555543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=60.12 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=68.5
Q ss_pred HHHHHhhc-cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 84 INSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 84 l~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
|+.+++.| +|+++.||..+++++|.+... ..++.|+..| .+.++.++..|+.+|..+.. ++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~----------~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-------EAIPALIELL-KDEDPMVRRAAARALGRIGD----------PE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-------HHHHHHHHHH-TSSSHHHHHHHHHHHHCCHH----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HH
Confidence 57788888 999999999999999977544 4678888877 78899999999999987742 56
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHHH
Q 007424 163 MEVRLERLLKSE-VFKAKAAGLVVVG 187 (604)
Q Consensus 163 L~~RL~klL~s~-~~kaK~alLsaIG 187 (604)
.++.|.+++.++ +..++.+++.++|
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777888888775 5566888777765
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.005 Score=71.05 Aligned_cols=248 Identities=15% Similarity=0.147 Sum_probs=162.4
Q ss_pred HHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHh
Q 007424 31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSS 108 (604)
Q Consensus 31 ~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~ 108 (604)
..|.+|--+.+.+||..++.+.. -|..|.-||++.-.+|..- .+-|||..++.+|-.+|.|-..-||-.++.+++.
T Consensus 502 vvasalgip~llpfLkavc~Skk--SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsa 579 (1172)
T KOG0213|consen 502 VVASALGIPALLPFLKAVCGSKK--SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSA 579 (1172)
T ss_pred HHHHHhCcHHHHHHHHHHhcccc--chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHH
Confidence 45666655567888888886543 3689999999999987765 8889999999999999999999999999999999
Q ss_pred hhhhhcc---chhHHHHHHHHHHHccCCChhHH----------------HHHHHH---HHHHHhhc--CC----------
Q 007424 109 LSPRVGA---SAFVTMLKLLSDALFTEQDTNAQ----------------VGAALC---LAATIDAA--QD---------- 154 (604)
Q Consensus 109 LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ----------------~~AA~c---LaalIE~a--~d---------- 154 (604)
|++...- ..|.++|+||-+.+-.+-.+... .+..+. |-.++... +|
T Consensus 580 laeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKV 659 (1172)
T KOG0213|consen 580 LAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKV 659 (1172)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHH
Confidence 9998742 23666888888776322222100 001111 11111111 11
Q ss_pred --------CC-hhhHHH-HHHHHHHHh---------------------------------------cCCchhHHHHHHHH
Q 007424 155 --------PD-AGKLGR-MEVRLERLL---------------------------------------KSEVFKAKAAGLVV 185 (604)
Q Consensus 155 --------~i-~~yL~~-L~~RL~klL---------------------------------------~s~~~kaK~alLsa 185 (604)
.+ ..|+.. ++|.+++.+ ++.+-+-+.+..++
T Consensus 660 v~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~et 739 (1172)
T KOG0213|consen 660 VKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAET 739 (1172)
T ss_pred HHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHH
Confidence 01 122211 333333222 22222112222221
Q ss_pred HHHHHh-------------------------------------------cCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007424 186 VGSVIG-------------------------------------------SGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (604)
Q Consensus 186 IGSiA~-------------------------------------------ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaA 222 (604)
+.-++. -|+...||+++++..+.-.|.+..-.+|..|
T Consensus 740 v~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqa 819 (1172)
T KOG0213|consen 740 VSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQA 819 (1172)
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHH
Confidence 111111 0222248988888888888899999999999
Q ss_pred HHHHHHHHHHcC--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCCCCCCC
Q 007424 223 AEALWRLAVVEK--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEAS 281 (604)
Q Consensus 223 aDaLg~LA~~~g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~~~~~~ 281 (604)
+|.++.||.+.+ ..+. ....|-.+|.+.-=.-.+.|-.++.-||.++-.+-|+.--++
T Consensus 820 adlis~la~Vlktc~ee~-~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 820 ADLISSLAKVLKTCGEEK-LMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHHHHHhccHHH-HHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 999999999876 3444 337778888877778889999999999999988887754443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=77.61 Aligned_cols=250 Identities=15% Similarity=0.156 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHhhcCC---CC----hHHHHHhhhhcCCCCCCchhHHHHH-HHHHHHhhh--cccccHHHHHHHHHhh
Q 007424 21 TYSQAAKELDSIAATVDP---TL----LPTFLSCILSTNSSDKPGVRKECIH-VIATLSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~p---e~----ip~fL~~L~e~~ss~kp~~RKaaI~-lLGvLae~h--~i~p~L~kIl~~Ivrr 90 (604)
|....+..|-.++..+|. +. +|-+..-+.|..+ -...++.++- +++.|+... -+.||++.+.|.+.-.
T Consensus 451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSs--ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~a 528 (1233)
T KOG1824|consen 451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSS--SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAA 528 (1233)
T ss_pred chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccc--hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHH
Confidence 788888889889988862 22 3444444444433 2356777764 444443322 8899999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhcc--ch--h--HHHHHHHHHHHc-----cCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGA--SA--F--VTMLKLLSDALF-----TEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d--~~--~--~sllkPL~eaL~-----~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
..||-..|-.-|+.+..++...+-. +| + ..++++++...+ .+.|..|...|..|+.-+|-+.+|.....
T Consensus 529 V~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e 608 (1233)
T KOG1824|consen 529 VGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE 608 (1233)
T ss_pred hcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999998899999999988854 21 2 227888877664 46788899999999988888888777666
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 160 L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f--~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
|+..++-|++-|.+.- .+-+++-|+.-||.++-.+ .|.+..+++.|.+|+....-.+|-+...++-.|....++.+
T Consensus 609 L~~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 609 LPRTLPILLERLGNEI--TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred hHHHHHHHHHHHhchh--HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777777775553 3445566777677666555 38999999999999999999999999999999999989888
Q ss_pred hhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 238 PEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 238 ~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
..+. +.++.-|-..=.+--++|-.-+..-|-.+-.++
T Consensus 687 ~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 687 PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 8775 444555554445666777666555555554433
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00057 Score=75.13 Aligned_cols=151 Identities=17% Similarity=0.036 Sum_probs=90.2
Q ss_pred HHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 82 KIINSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 82 kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
..++.++..| .|+++.|+.+|+.++....... .+..|+++| .+.+..+..+++.+|..+- .
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~-------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~----------~ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQEDAL-------DLRSVLAVL-QAGPEGLCAGIQAALGWLG----------G 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCChH-------HHHHHHHHh-cCCCHHHHHHHHHHHhcCC----------c
Confidence 4455666667 4666777777666665443221 366777777 4556667777777665322 2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
+...+.|.++|++++..++.+++.++|- -+.. ..+.|...|.++|-.+|..|+.+||.|... +....
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~~-------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~- 182 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGA---HRHD-------PGPALEAALTHEDALVRAAALRALGELPRR--LSEST- 182 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHh---hccC-------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH-
Confidence 4455667777777777777666655552 1111 123455556677777777777777776542 22221
Q ss_pred hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 241 KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 241 ~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|...+.|..+.||.+++.++...
T Consensus 183 -------L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 183 -------LRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -------HHHHHcCCCHHHHHHHHHHHHHc
Confidence 22335577777777777777554
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0033 Score=69.20 Aligned_cols=118 Identities=23% Similarity=0.126 Sum_probs=56.1
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L 163 (604)
+..+++.|.|++..||.+++++||.+-.. .....|...| .+.++.++.++..++..... + -
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-------~a~~~L~~~L-~~~~p~vR~aal~al~~r~~---~--------~ 148 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-------QAEPWLEPLL-AASEPPGRAIGLAALGAHRH---D--------P 148 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-------HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc---C--------h
Confidence 45555566666666666666666654333 1333444444 44455555444433332111 0 0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
.+.+.++|+++++.++..++.++|.+-.. ..++.|...+.+.|-.+|.+|+.+|+.+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRR---------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccc---------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12344445555555555555555532211 1233344445555555555555555444
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0021 Score=73.22 Aligned_cols=217 Identities=17% Similarity=0.186 Sum_probs=148.6
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-----
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGA----- 115 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----- 115 (604)
.....+|..+..+.++.+|++|+..|=.|.+|. .|++ +....++.++|.+..||.||+..+--++...+-
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 345566777788889999999999998998876 2333 456788999999999999998888777766631
Q ss_pred ch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHH---------HHh----------
Q 007424 116 SA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLE---------RLL---------- 171 (604)
Q Consensus 116 ~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~---------klL---------- 171 (604)
+. ....+.-+..++ .+-+-.|..-||-+|..+-....+.+.+.|.+ +|-++- +.|
T Consensus 273 ~~e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 11 112566667777 44444455556666655544333323333333 444221 111
Q ss_pred -------------------------------cCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHH
Q 007424 172 -------------------------------KSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 172 -------------------------------~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+..=+.++.|++..++++|..... +....+..|.+.+.++.-.+|-
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FAVRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHhccHHHHHHH
Confidence 122234788888888888764332 3356788899999999999999
Q ss_pred HHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 221 AAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 221 aAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
-|+-+|-.|+.. +..=..+...++++|+ |....||+++.+.|...+
T Consensus 429 ~ai~aL~~Is~~-l~i~eeql~~il~~L~----D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 429 KAIFALTMISVH-LAIREEQLRQILESLE----DRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHHHH-heecHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcC
Confidence 999999999986 3333346677899999 999999999998887653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=61.92 Aligned_cols=109 Identities=28% Similarity=0.184 Sum_probs=82.4
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCC-
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS- 198 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~p- 198 (604)
++++|++.| .+.++.+...|+.||..+....++....++. .+++.|.++|++++..++..++.+++.++..+.....
T Consensus 8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 567777777 4556778888888888888764333333444 5888999999999999999999999998865432211
Q ss_pred ch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 199 GL-KGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 199 yf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
+. ..+++.|.++|.+.+..+|..|+.+|..|+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 11 236888999999899999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00069 Score=66.87 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=83.1
Q ss_pred hccCCChhHHHHHHHHHHhhhhhhcc------------chhHH-----------HHHHHHHHHccCCChhHHHHHHHHHH
Q 007424 90 NFRDKNSALQATCISTVSSLSPRVGA------------SAFVT-----------MLKLLSDALFTEQDTNAQVGAALCLA 146 (604)
Q Consensus 90 rLkDpDs~VR~Ac~~aLg~LAe~l~d------------~~~~s-----------llkPL~eaL~~eqdk~vQ~~AA~cLa 146 (604)
.++||++.||.|++.++..|=+.... ..|.+ +=.-|+.+|..|++..+.....-||+
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 37899999999999999998766431 11221 33444555556778888888999999
Q ss_pred HHHhhcCCCC--hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc
Q 007424 147 ATIDAAQDPD--AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA 194 (604)
Q Consensus 147 alIE~a~d~i--~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~ 194 (604)
.+|++.++.- .+++.+++..+..++.+.+..++.+.+.++|.++.+..
T Consensus 128 ~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 128 VLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 9999988753 47899999999999999999999999999999887643
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.01 Score=63.05 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHH-HHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh---
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDS-IAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--- 73 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~-lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~--- 73 (604)
.+-.++.++++.|.|+- |+..|++.|-. |..+.-++. ...|+.++.-.....++..+..|.++++++|--
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 44556778888887655 66777777755 334444333 355666666666555555666677888888544
Q ss_pred -hcccccHHHHHHHHHhhccCCCh--hHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc----c--CC---------C
Q 007424 74 -HNLSPYITKIINSITRNFRDKNS--ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF----T--EQ---------D 134 (604)
Q Consensus 74 -h~i~p~L~kIl~~IvrrLkDpDs--~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~----~--eq---------d 134 (604)
......+..+.|++.+.+.|... .+|.+|+.+||.++-.....+... -+-..++.+| . +. +
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 23345567788888888999764 479999999999988765432111 2223444332 1 11 2
Q ss_pred hhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc----CcC-CchHHHHHHHH
Q 007424 135 TNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA----VDG-SGLKGLVSCLL 208 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~----~f~-pyf~~lm~~L~ 208 (604)
+.+..+|..|-.-++-.+++. +..++...+|+|..+|++++..++-++=.+|+-+...+. .|. +..+.++..|.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 345555555555555444432 346678899999999999999999999999988876442 332 44444555554
Q ss_pred hhh
Q 007424 209 GFL 211 (604)
Q Consensus 209 e~L 211 (604)
+.-
T Consensus 280 ~La 282 (309)
T PF05004_consen 280 ELA 282 (309)
T ss_pred HHH
Confidence 433
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=71.37 Aligned_cols=215 Identities=17% Similarity=0.171 Sum_probs=147.2
Q ss_pred hhhcCChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHH
Q 007424 13 LNKLSDRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYIT 81 (604)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~lA~~------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~ 81 (604)
|+|--|.-.++.|+..|-.|... | ..-.+|.+.+.+. +.++.+|..|-.+++.++-.. .++.-=|
T Consensus 175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 44444666889999999888765 3 3334788877776 456788999988888874433 7777789
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc---c------------------c----------------h-----h-
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVG---A------------------S----------------A-----F- 118 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~---d------------------~----------------~-----~- 118 (604)
|++|.++....|+++.|.--|..||+.|+.... + . | +
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 999999999999999999888999999986542 0 0 0 1
Q ss_pred -HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 119 -VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 119 -~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
..|++||...|--..+..+|..|..-|-.+--........+... -+|++.+++-..+..++.-+-.||.-++-.. .+
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~ 409 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-ND 409 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-cc
Confidence 12889999888433344577777666643332211111111111 4567777777776777766666666555332 22
Q ss_pred CCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 197 GSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 197 ~pyf~--~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
..||- .++|.|++.+.++.-++|..|+.+|+-+..-
T Consensus 410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 22332 3688999999999999999999999988763
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0033 Score=73.76 Aligned_cols=228 Identities=13% Similarity=0.108 Sum_probs=169.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
+++++..+........+.+|-..+.-+..+-..- -+..+-+..+|.|...-.|...-||.|..+.+.+++..+...-
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~ 514 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF 514 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH
Confidence 6666666655555666778877774333321111 4566778888899999988888899999999999998874211
Q ss_pred hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC
Q 007424 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG 197 (604)
Q Consensus 118 ~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~ 197 (604)
+...+.+|+..-+.+..-.++.+|+.+|.++++..+ ..-+-..+.++++....++++..+-+.+.+|-.+|.+.+. .
T Consensus 515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-e 591 (759)
T KOG0211|consen 515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-E 591 (759)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-H
Confidence 222344444443334445689999999999999987 2235688999999999999999999999999999976542 1
Q ss_pred CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhC
Q 007424 198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 198 pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i 273 (604)
-+-+.++|.+.+...+..-.+|.-+|..|..+...+.. .-..+.++.+++...-|--..||=.+..|+++....
T Consensus 592 i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 592 ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 23456788888888888999999999999998876542 223466778888888899999999999999988653
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0016 Score=73.68 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=153.4
Q ss_pred HhhhcCChh--HHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCchhHHHHHHHHHH--HhhhcccccHHH
Q 007424 12 LLNKLSDRD--TYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITK 82 (604)
Q Consensus 12 ~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~-----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvL--ae~h~i~p~L~k 82 (604)
+|+-++|.- -+++++...+.+...|+--. ...++..|+-++++++... +-.+.+||.+ +-+....|||+.
T Consensus 526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ 604 (975)
T COG5181 526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSM 604 (975)
T ss_pred HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHH
Confidence 444444443 23455666666666654222 2444444444444433221 1233556654 223378899999
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--H-HHHHHHHHHccCCChhHH---HHHHHHHHHHHhhcCCC
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV--T-MLKLLSDALFTEQDTNAQ---VGAALCLAATIDAAQDP 155 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--s-llkPL~eaL~~eqdk~vQ---~~AA~cLaalIE~a~d~ 155 (604)
|++.|.++|+.+-+.||.-+++.+|.|+--+.... +. . +=.-|.+.| ++..+.+- .+|..|+-.+...-.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~-- 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL-GEDYPEVLGSILKAICSIYSVHRFRS-- 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc--
Confidence 99999999999999999999999999998875322 11 1 333456666 66666655 355555555554321
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
.-|-...|+|+|.-.|++.+-|+..-.+..+|.|+--+....+.=++ +-=-|.+.|.+-+-+.|.+|.+++|.|+.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 11223567777888899999999888888999887543322111111 1223566677777889999999999999999
Q ss_pred C--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 234 K--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 234 g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
| |.+.-. ++=|+ =.-.+-|--..-||...-+..+.
T Consensus 762 GPqdvL~~L----lnnLk----vqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 762 GPQDVLDIL----LNNLK----VQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred CHHHHHHHH----Hhcch----HHHHHhhhhhhhhhhhhHhhcCc
Confidence 8 333322 22222 11133444455566666555544
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00058 Score=72.89 Aligned_cols=206 Identities=17% Similarity=0.272 Sum_probs=133.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh---hh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN---SH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae---~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~L 109 (604)
+...+|.|++.|+++. -.+|..++-+||.+|. +| .-.--|+.++..+.. .-++.+.-+-+-|+|..|
T Consensus 155 d~~AVPlfiqlL~s~~----~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s--s~~~ismlRn~TWtLSNl 228 (526)
T COG5064 155 DAGAVPLFIQLLSSTE----DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS--SAIHISMLRNATWTLSNL 228 (526)
T ss_pred eCCchHHHHHHHcCch----HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh--ccchHHHHHHhHHHHHHh
Confidence 5666899999998543 3799999999999943 33 333346666666552 123334333456888888
Q ss_pred hhhhccch---hHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCCchhHHHHHHH
Q 007424 110 SPRVGASA---FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLV 184 (604)
Q Consensus 110 Ae~l~d~~---~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~~~kaK~alLs 184 (604)
++----+| -.+ .++-|+..+ -.-|+.+-.-||.|+.-+.++..+.+-..+.- +++||+++|.|++.++..-+|.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 76532122 122 444444444 55688888999999999888866555444544 7789999999999999888888
Q ss_pred HHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH---------HcCcchhhhhhHHHHHHHhccC
Q 007424 185 VVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV---------VEKDAVPEFKGKCLKIFESKRF 253 (604)
Q Consensus 185 aIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~---------~~ge~f~py~~~~i~~Le~cRf 253 (604)
.||-|+.....-.+.. -..++.+...|++.--.+||.||.+|+-|-. +.-+.++|+ +.+|+..-|
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpL----i~lls~ae~ 383 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL----IHLLSSAEY 383 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHH----HHHHHHHHH
Confidence 8887653221111100 1234555566777666999999999988753 222556665 666665444
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.007 Score=66.95 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=139.2
Q ss_pred HHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHH-HHHHHHhhh--cccccHHHHHHHHHhhccC-CChhHHHHHHH
Q 007424 32 IAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIH-VIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCIS 104 (604)
Q Consensus 32 lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~-lLGvLae~h--~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~ 104 (604)
...++.|+. .+...+.|.+...+.+...||+|+. +++++|++- .--.|..+||-.++.-|.| -+...+.-|+.
T Consensus 273 ~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLr 352 (516)
T KOG2956|consen 273 SMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALR 352 (516)
T ss_pred chhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 344454544 4556666666666778899999997 899999987 4456899999999999999 77788999999
Q ss_pred HHHhhhhhhcc----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH
Q 007424 105 TVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (604)
Q Consensus 105 aLg~LAe~l~d----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~ 180 (604)
.|+-+...=.. ..+.++++-|-.+- +..+.+-..|+-|+-.++-... +...+--++|.|+. .+.+.-.
T Consensus 353 vL~~ml~~Q~~~l~DstE~ai~K~Leaa~--ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt----~D~~~~~ 424 (516)
T KOG2956|consen 353 VLREMLTNQPARLFDSTEIAICKVLEAAK--DSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT----ADEPRAV 424 (516)
T ss_pred HHHHHHHhchHhhhchHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc----CcchHHH
Confidence 88888776321 12333566555554 3344455555555444444321 12334445555444 4444444
Q ss_pred HHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 181 AGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 181 alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
++|-.+.-+++ .- +...+.++.++|++.+...+....+||.|.=+|-+|...+| +.+.||
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePh 487 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPH 487 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhH
Confidence 55555555553 32 22347788899999999999999999999999999999999 999999
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0032 Score=69.51 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=133.4
Q ss_pred HHHHHhhhcCCh---hHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC-CCCchhHHHHHHHHHHHhhh--ccc
Q 007424 8 SVNGLLNKLSDR---DTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH--NLS 77 (604)
Q Consensus 8 rvl~~L~KLsDr---DT~r~A~~eLD~lA~~L~p---e~-ip~fL~~L~e~~ss-~kp~~RKaaI~lLGvLae~h--~i~ 77 (604)
-|.+.|.++++. |.++.|+.+|-.|...=.- ++ |-.+|..+.|.... .+..-|+.|++.|+-+++.- .+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 355667777654 5889999998777652110 33 67777777777655 56788999999999998866 555
Q ss_pred ccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-
Q 007424 78 PYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP- 155 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~- 155 (604)
.+-.--+.-++..-+|++. ++|.|.-+++..++.++....+. .+.|++- +..+| .-..+.-++.+++|.+..+
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~-~i~~~Il---t~D~~-~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-NISPLIL---TADEP-RAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-HHhhHHh---cCcch-HHHHHHHHHHHHHhhcCHHH
Confidence 5655555566666678776 57888888888888887432222 3333332 33343 2223333889999997643
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hcC-cCcCCchHHHH
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSG-AVDGSGLKGLV 204 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA-~ag-~~f~pyf~~lm 204 (604)
+...++.++|.+++..++.+.-+|.+++=|+=++. .+| +++.|||..+-
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 45789999999999999998888877766666665 588 77789998763
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00021 Score=50.36 Aligned_cols=31 Identities=3% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|||.+++.|+||++.||.||+.++|.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999874
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=69.43 Aligned_cols=268 Identities=12% Similarity=0.138 Sum_probs=183.5
Q ss_pred chHHHHHHHHHhhhcC-ChhH--HHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHH-HHHHHHHhhhcc
Q 007424 2 AHALKTSVNGLLNKLS-DRDT--YSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECI-HVIATLSNSHNL 76 (604)
Q Consensus 2 ~~eLk~rvl~~L~KLs-DrDT--~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI-~lLGvLae~h~i 76 (604)
+++.-..++..|..|. +.+| +.-++..|-..+..++++. ...|...+.-.... ++...|-.. -+++.+.- .+
T Consensus 153 ~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~--~~ 229 (759)
T KOG0211|consen 153 GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYV--SL 229 (759)
T ss_pred chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhcc--CC
Confidence 3566777788888874 7777 8889999999999998887 35555555432222 444433222 33333321 11
Q ss_pred c-ccHH-HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 77 S-PYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 77 ~-p~L~-kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
. +-+. ++.+...+.-+|-.+.||.|++.-+|.+|..+......+.+.|.+..|..|....|+..|.-++..+.+...+
T Consensus 230 ~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 230 PDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred ChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 1 2222 3444455556778889999999999999999976445558888888887665557999999999998888776
Q ss_pred CChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 155 PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
+. +....+++.++++.+..+-.+..++...--.+.. .|.. .+-....+.....+.++.|..|.+++--...++...
T Consensus 310 ~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 310 DD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred ch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 55 6677899999999999888777665553333332 3331 122245666777778899999999999999999877
Q ss_pred C-cchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 234 K-DAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 234 g-e~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
. +.+... ...++..+..+=-|...+||.+...-+--.+-+-+
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~ 430 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP 430 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC
Confidence 6 444433 34555777778889999999987665554444443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.023 Score=60.36 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=116.3
Q ss_pred CchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc--c--chhHH-HHHHHHH
Q 007424 57 PGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG--A--SAFVT-MLKLLSD 127 (604)
Q Consensus 57 p~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~--d--~~~~s-llkPL~e 127 (604)
...|.+++..|-.+-..| ++..+..-|+..+.+.|+=..+.=+..|+.+++.++=.+. . ..+.. +.++|..
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 578999998887776555 7777888899999999998887667778888999888864 2 11222 5555555
Q ss_pred HHccCCC--hhHHHHHHHHH--HHHHhhcCCCChhhHHHHHHHHHHHh--cCC----------chhHHHHHHHHHHHHHh
Q 007424 128 ALFTEQD--TNAQVGAALCL--AATIDAAQDPDAGKLGRMEVRLERLL--KSE----------VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 128 aL~~eqd--k~vQ~~AA~cL--aalIE~a~d~i~~yL~~L~~RL~klL--~s~----------~~kaK~alLsaIGSiA~ 191 (604)
.+. +.. ..+...++.|| ..++-+.+.....-+-+.|.-++... +.. +..+..++|.+-+-++.
T Consensus 137 ~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 137 ILT-DSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred HHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 553 333 23323333344 45554333222222224555443322 221 23577888888887775
Q ss_pred -cCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 192 -SGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 192 -ag~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+.. .+..+....+|.|.+.|.++|-.+|.+|-++|+-|-....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 216 TLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 332 1335567789999999999999999999999998866443
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.038 Score=66.83 Aligned_cols=235 Identities=12% Similarity=0.138 Sum_probs=135.6
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh-hh-----cccccHH
Q 007424 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSN-SH-----NLSPYIT 81 (604)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae-~h-----~i~p~L~ 81 (604)
+..|+--|--.+|..-|+..|-.+++.++-+. |-.+|+++.-....+.+.+|-.|+..|..+-. .- ...=+.+
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e 506 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE 506 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh
Confidence 44566666678888899999999999987655 43333333333334556889888877766522 22 1112567
Q ss_pred HHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhcc------------------------c-------hhHHHHHHHHHHH
Q 007424 82 KIINSITRNFRD-KNSALQATCISTVSSLSPRVGA------------------------S-------AFVTMLKLLSDAL 129 (604)
Q Consensus 82 kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d------------------------~-------~~~sllkPL~eaL 129 (604)
-|+|.|...+.| ....||-|-+..|++||.-.-+ + ..+..+.-++-.|
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH
Confidence 778888888999 6667999999999999876531 0 0111233333344
Q ss_pred ccCCChhHHHHHHHHHHHHHhh-----cCCCChhhH--------------------------------HHHHHHHHHHhc
Q 007424 130 FTEQDTNAQVGAALCLAATIDA-----AQDPDAGKL--------------------------------GRMEVRLERLLK 172 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~-----a~d~i~~yL--------------------------------~~L~~RL~klL~ 172 (604)
+.+..+.|..+-...+.-++-. ..|.++..| .-|+|=|.+.|.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 4444444433322222222221 122221111 113344444444
Q ss_pred CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---------cchhhhhhH
Q 007424 173 SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---------DAVPEFKGK 243 (604)
Q Consensus 173 s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---------e~f~py~~~ 243 (604)
.+--.+-.-+|+++..++.-|-.-.++.-.+++...++|-..+..+|.+++..|.+++.-.+ .++.||..+
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~ 746 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLER 746 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhc
Confidence 44222222333344444433322237777788888888888888899999999999998433 356666543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.029 Score=63.57 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=147.2
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..|-+.|..-.++---.+--++.+++-.+++...-...+...++.+.-.|+-+..+.|-+|...|.+||-.. +....
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~--P~kv~ 339 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY--PQKVS 339 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC--Cceee
Confidence 4444444444444322355666777766666655334457888999999999999999999999999999886 34445
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHH---------HHHhh-------cCCCC----hhhHHHHHHH-----------HHH
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLA---------ATIDA-------AQDPD----AGKLGRMEVR-----------LER 169 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLa---------alIE~-------a~d~i----~~yL~~L~~R-----------L~k 169 (604)
.|.|=++.|..+.++++...|..-|- +++.- ..|.. ++.+..|+-. |..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 88888888887777776655544441 11111 11111 2223322221 222
Q ss_pred -HhcCCchhHHHHHHHHHHHHHh-cC---cC-------cC---CchHHH--------------------HHHHHhhhcCC
Q 007424 170 -LLKSEVFKAKAAGLVVVGSVIG-SG---AV-------DG---SGLKGL--------------------VSCLLGFLSSQ 214 (604)
Q Consensus 170 -lL~s~~~kaK~alLsaIGSiA~-ag---~~-------f~---pyf~~l--------------------m~~L~e~L~s~ 214 (604)
|++...++-|.+.+.||.-++. .. +. |. .|-+.+ +..+-..+.-+
T Consensus 420 ~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE 499 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE 499 (898)
T ss_pred HHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh
Confidence 3334488888888888887664 10 00 10 111111 11222222235
Q ss_pred cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 215 DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 215 Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+--+|.+|..||..+|....+.+.| .++..+|..|--|+--.|||-|.=+|..+.
T Consensus 500 N~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 500 NNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7788999999999999988888874 588999999999999999999999988886
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.017 Score=56.15 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHH
Q 007424 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~ 104 (604)
|+-.|--|+.-.| .-+.++++.|.....+++|.+|+.|+++|.-|....++ ..=+.++..+.+.|.|+|+.||++|..
T Consensus 8 ~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~~~Ir~~A~~ 85 (178)
T PF12717_consen 8 AIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDENPEIRSLARS 85 (178)
T ss_pred HHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCCHHHHHHHHH
Confidence 3444433444333 23556666666666677899999999999998665522 222444566677789999999999999
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHccCC-Ch----hHHHHHHHHHHHHHhhcC-CCC-hhhHHHHHHHHHHHh
Q 007424 105 TVSSLSPRVGASAFVTMLKLLSDALFTEQ-DT----NAQVGAALCLAATIDAAQ-DPD-AGKLGRMEVRLERLL 171 (604)
Q Consensus 105 aLg~LAe~l~d~~~~sllkPL~eaL~~eq-dk----~vQ~~AA~cLaalIE~a~-d~i-~~yL~~L~~RL~klL 171 (604)
.+..+........+...++.++..|.+.. .+ .....--.-+.-+++.+. +.. ...+.+||+|+....
T Consensus 86 ~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 86 FFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 99999988633446668888888884321 11 112222333455666665 322 234566666666554
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.014 Score=68.91 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=139.4
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---------------chhHHHHHHHHHHHccCCChhHHHHHHHHHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA---------------SAFVTMLKLLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---------------~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
|--.++..|++| .+=.++++++..+...... |.+-.-+-|.+...+..+......-=-.+|.-
T Consensus 816 ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 816 IAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 344455566554 4556677777776655432 12222223333333332211122223456788
Q ss_pred HHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCc---HHHHHHH
Q 007424 148 TIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQD---WAARKAA 222 (604)
Q Consensus 148 lIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~D---w~lRkaA 222 (604)
++-+.+.++ .+.++.|.|=|++.|..++.-+|-..+.+|--..- .+.-..-|+..++|.+...=.+.| ..+|-.|
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 888877654 68899999999999999999999888888876553 444445788888888877655555 7899999
Q ss_pred HHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 223 AEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 223 aDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+.+|+.|.+..+ ..+.||...+|+.|+-|-=||=..||.-|.++=|.|-.|...
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~s~ 1028 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLGSK 1028 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcccC
Confidence 999999999877 899999999999999999999999999999999999887654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0079 Score=62.28 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=112.1
Q ss_pred cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHH--HHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 36 VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT--KIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 36 L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~--kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|+++.|..|+.+|.. +.+|..++.++.++|..+..-+-...+. -.++.|.+.|.+|++.||.-|++|+..|+...
T Consensus 9 l~~~~l~~Ll~lL~~---t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLES---TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 677778887777763 4578999999999999755222222222 25778999999999999999999999998886
Q ss_pred ccchhH-HHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 114 GASAFV-TMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 114 ~d~~~~-sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
..+... .++..+++.+... -+..+|.++..+|..+. ..+..-..+...++.|+.+|.+.+-++|..++-++.-++.
T Consensus 86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 544322 3788888876543 47789988888887773 2333345677788889999999998999888887776663
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0045 Score=65.47 Aligned_cols=174 Identities=21% Similarity=0.183 Sum_probs=117.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~ 118 (604)
-..-|.....-.++.+|...=.++..|-.|++.| .+.+.|.+++-+|++.++.+-+.|-.|+|.|++.|...+-+. +
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i 164 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-I 164 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3344444445566788999999999999999999 999999999999999999999999999999999999998431 1
Q ss_pred HHHHHHHHHHHcc--CC-ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHh--c
Q 007424 119 VTMLKLLSDALFT--EQ-DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA-AGLVVVGSVIG--S 192 (604)
Q Consensus 119 ~sllkPL~eaL~~--eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~-alLsaIGSiA~--a 192 (604)
...+..|+-.|++ .+ +.-+...|--||-+|+..... .++++.|.-.+.+....++. +.+-....++. +
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 1267777777763 22 444777788888899887643 44555555555554333321 11111121221 2
Q ss_pred CcCcCCchHHHHHHHHhhhcCCcHHHHHH
Q 007424 193 GAVDGSGLKGLVSCLLGFLSSQDWAARKA 221 (604)
Q Consensus 193 g~~f~pyf~~lm~~L~e~L~s~Dw~lRka 221 (604)
.+.-.+|...+++.+++-+.+.-..+|++
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~ 267 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREA 267 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccc
Confidence 22233566667777777776654444433
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.02 Score=67.82 Aligned_cols=187 Identities=15% Similarity=0.110 Sum_probs=149.4
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-c--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-A--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
-+++|-+.+...+.|++..=|..+++.|....+.-. + .....++..++...+-|.|.++-.-||.||..+.-.+...
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 377888899999999999999999999988877653 1 2344588888888876778888899999999999999888
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
..+|...+.|.|+..|...-..++.+++.++-++..+. .+...++.+.+++.+-.-+.|......+...-.-.+
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST-----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 88899999999999998887788888888887666532 245788999999999999999998888888776554
Q ss_pred -----cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 235 -----DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 235 -----e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+.+...+..|+.... |+-+.||.|+.+++-....+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred cCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHh
Confidence 233334455555555 999999999999998776643
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.052 Score=65.63 Aligned_cols=231 Identities=12% Similarity=0.176 Sum_probs=162.3
Q ss_pred ChhHHHHHHHHHHHHHhh-----cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhh
Q 007424 18 DRDTYSQAAKELDSIAAT-----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~-----L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Ivrr 90 (604)
+.-+++=|.+.|+.+... +....+--+.+.|.+..++...+.|+..+.+|-.|.+.| ...-.+++.||-++=.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 334778888889888776 333336777888888888888899999999999998888 5556789999988877
Q ss_pred ccCCChhHHH---HHHHHHHhhhhhhccc--h----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC-CChhhH
Q 007424 91 FRDKNSALQA---TCISTVSSLSPRVGAS--A----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD-PDAGKL 160 (604)
Q Consensus 91 LkDpDs~VR~---Ac~~aLg~LAe~l~d~--~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d-~i~~yL 160 (604)
++|-+..-|+ +|+.-+|++...+.+. + ...|+.-|...|.++.- .+-..--.|+..++..-.. ...+++
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~-~~~as~Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDST-RVVASDIVAITHILQEFKNILDDETL 825 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHhccccHHHH
Confidence 7998876555 5555556444444432 2 11277777777765432 2222224444444433222 234899
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV 237 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f 237 (604)
++|+.-+.-.|.+.+-++..++|+.|.-++.. -..- .||.+.+||.+...+.+---..|+.+--.|-.|..-.| +.+
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999999988888888877766653 2222 39999999999996666688899999999999999887 655
Q ss_pred hhhh-hHHHHHHH
Q 007424 238 PEFK-GKCLKIFE 249 (604)
Q Consensus 238 ~py~-~~~i~~Le 249 (604)
.+|. +.--+.|.
T Consensus 906 e~~~pee~~klL~ 918 (1176)
T KOG1248|consen 906 ESFLPEEDMKLLT 918 (1176)
T ss_pred HhhCHHHHHHHHH
Confidence 5554 33344444
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.069 Score=61.06 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=125.8
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
|.=-++..|+.-+-.+|++|..++|.+++-+ +|. .+|--|++.| .-|+.....+.+.|+.-+.|..+. -.
T Consensus 731 IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai--GPq-dvL~~LlnnL-kvqeRq~RvctsvaI~iVae~cgp------fs 800 (975)
T COG5181 731 ICFELVDSLKSWNKEIRRNATETFGCISRAI--GPQ-DVLDILLNNL-KVQERQQRVCTSVAISIVAEYCGP------FS 800 (975)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc--CHH-HHHHHHHhcc-hHHHHHhhhhhhhhhhhhHhhcCc------hh
Confidence 3333444455555567777777777777776 332 2455555555 234444445555555555554331 23
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH---cC--cc
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV---EK--DA 236 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~---~g--e~ 236 (604)
++|-|+.=-..|...+++.+|-++.=..+ .|.+..-|.-.+.|.|.+.|++.|---|..|+..|--|+.- .| |+
T Consensus 801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 55556666677777788888888877665 66666788888999999999999999999999999998872 23 34
Q ss_pred hhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 237 VPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 237 f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+. +.+++|=..=||-.++|-.+..|.++.+.++-+.
T Consensus 881 ~I----HLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 881 AI----HLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HH----HHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44 3478888888999999999999999999776544
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.11 Score=61.13 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=145.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHh--hhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q 007424 51 TNSSDKPGVRKECIHVIATLSN--SHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA 128 (604)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvLae--~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~ea 128 (604)
+..++-++.|-+|++-|.-+.+ .+.-.-+..+++.+....|+|-|+-|.--|..++..|++.+.+ .+++-|.+.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~dL~e~ 810 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPDLSEE 810 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHHHHHH
Confidence 3556778999999999999988 5533347889999999999999999999999999999999743 478888885
Q ss_pred HccCCChh-----HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHH
Q 007424 129 LFTEQDTN-----AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKG 202 (604)
Q Consensus 129 L~~eqdk~-----vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~ 202 (604)
...+.+++ ...| -|+-++++..++-...|+..|..-+++-++.|+-.-|...++.+|-+-+.- .....+|-.
T Consensus 811 Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 54433332 2233 678888898888888999999999999999887777777777777665521 111135666
Q ss_pred HHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhh-hhhHHHHHHHhc
Q 007424 203 LVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPE-FKGKCLKIFESK 251 (604)
Q Consensus 203 lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~p-y~~~~i~~Le~c 251 (604)
+..+|....+ ++.-.+|.+|++.|..+-...|+.+.| +....+...+.|
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl 939 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL 939 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 6666666554 667899999999999999988855555 333344444444
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.04 Score=60.39 Aligned_cols=137 Identities=19% Similarity=0.323 Sum_probs=105.1
Q ss_pred HHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh---------h------cccccHHHHHHHHHhhccCC
Q 007424 30 DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---------H------NLSPYITKIINSITRNFRDK 94 (604)
Q Consensus 30 D~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~---------h------~i~p~L~kIl~~IvrrLkDp 94 (604)
+.++.-.+|.. ..++..|.+...+ +..+..+-++|+++... | +-.-+...++|.+++..++.
T Consensus 259 KaLv~R~~~~~-~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 259 KALVMRGHPLA-TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA 335 (415)
T ss_pred HHHHHcCCchH-HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Confidence 33344345543 3334444444443 56799999999999655 2 23345778899999999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~----~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
+..++.+++.||+.+-.++..+ ....+++-|+++| .-.+..++.++-.+|..+++..++.+.+|+..|+++|+++
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 9889999999999999998642 2334899999999 6677789999999999999998777789999999999875
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=62.14 Aligned_cols=255 Identities=17% Similarity=0.162 Sum_probs=146.3
Q ss_pred HHHHHhhhcCChhH--HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc-cH
Q 007424 8 SVNGLLNKLSDRDT--YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YI 80 (604)
Q Consensus 8 rvl~~L~KLsDrDT--~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p-~L 80 (604)
-+...|.-|.|.|| +-+|++-+-.++..||++- |.-.++++.+.. .+..=-.+.++||.||..-.+-| -+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e---~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE---DDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC---chhHHHHHHHHHHHHHhcCCcchHHH
Confidence 34456677788884 6899999999999999654 344444443332 12333378899999987664444 68
Q ss_pred HHHHHHHHhhccCCC--------hhHHHHHHHHHHhhhhhhccchhHHHHH-----HHHHHHccCCChhHHHHHHHHHHH
Q 007424 81 TKIINSITRNFRDKN--------SALQATCISTVSSLSPRVGASAFVTMLK-----LLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 81 ~kIl~~IvrrLkDpD--------s~VR~Ac~~aLg~LAe~l~d~~~~sllk-----PL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
+.++|.|++.|.=.+ ..||+|||..+=++++-.......-++. .|+.|+| |.+-+...+|+.|+..
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-DrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-CchhhHhHHHHHHHHH
Confidence 999999999997644 4599999999999988874211111333 3334444 6677888899999877
Q ss_pred HHhhcCCC---C-----hhh-------------------HHHHHHHHHHHh-cCC----chhHHHHHHHHHHHHHhcCcC
Q 007424 148 TIDAAQDP---D-----AGK-------------------LGRMEVRLERLL-KSE----VFKAKAAGLVVVGSVIGSGAV 195 (604)
Q Consensus 148 lIE~a~d~---i-----~~y-------------------L~~L~~RL~klL-~s~----~~kaK~alLsaIGSiA~ag~~ 195 (604)
.|---+.. + ..| ++.++..++.-| .+. +.+.+....-++.=+..-
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~--- 574 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT--- 574 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh---
Confidence 76542221 1 112 122333333322 222 223444333333322111
Q ss_pred cCCchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhh--------hHHHHHHHhccCcch--hHHHHH
Q 007424 196 DGSGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFK--------GKCLKIFESKRFDKV--KVVREV 262 (604)
Q Consensus 196 f~pyf~-~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~--------~~~i~~Le~cRfDKv--K~VRda 262 (604)
-+-|+. ..+|-|.++.-..|-..|-.+.-+.|.+..... +..-++. .+++.-+...+|++= -..|.+
T Consensus 575 ~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~ 654 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA 654 (1133)
T ss_pred hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence 123443 345666666666777777777777777666543 2112222 123445555566655 234444
Q ss_pred HHHHHHH
Q 007424 263 MNKMIEA 269 (604)
Q Consensus 263 ~~~AL~~ 269 (604)
....++.
T Consensus 655 ~~~~Ie~ 661 (1133)
T KOG1943|consen 655 TLKFIEQ 661 (1133)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.12 Score=60.39 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=128.4
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~ 118 (604)
+.+|+..|.....+-.-.+=-++-+++-.+.... .++| -++++.-.|.-|.+.+|-||..+|-.+|..... .
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~--~ 316 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ--A 316 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc--c
Confidence 4444444444333322233334444444443322 4445 566777778889999999999999999987632 2
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHH---------HH-------HHhhcCCCC----hhhHH----------H-HHHHH
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCL---------AA-------TIDAAQDPD----AGKLG----------R-MEVRL 167 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cL---------aa-------lIE~a~d~i----~~yL~----------~-L~~RL 167 (604)
...+.+=++.|..+.++.+..-|-.-| ++ ++-...|.. ++.+. . +|.=|
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 234555555555555544332222222 11 111111211 11111 1 44446
Q ss_pred HHHhcCC-chhHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHh------------hh---------------------c
Q 007424 168 ERLLKSE-VFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLG------------FL---------------------S 212 (604)
Q Consensus 168 ~klL~s~-~~kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e------------~L---------------------~ 212 (604)
..+|+.. .|.-|.+.+.+|-.++.-.... .+-+..++..+.+ .| .
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence 6777766 8889999999999988621111 1222222222211 11 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 213 SQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
-++.-+|.+|.-+|+.++ .+ +... .+++-+|..|-+|+.-.|||.|.-+|..+.
T Consensus 477 LEn~ivRaaAv~alaKfg--~~~~~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFG--AQDVVLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHh--cCCCCcc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 257888999999999998 33 2222 567899999999999999999999988876
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0032 Score=49.16 Aligned_cols=54 Identities=24% Similarity=0.096 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 216 WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 216 w~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
|.+|.+|+.+||.++...++.+.||...++..|-.+=-|.-..||.++..||..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 899999999999988888889999999999999988888888999999999863
|
... |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.14 Score=53.78 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcCCCC-hHHHH-HhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHH
Q 007424 24 QAAKELDSIAATVDPTL-LPTFL-SCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQ 99 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~-ip~fL-~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR 99 (604)
++...|+..-..+++.. +.-++ ..|.+...+.++.+|+.|+++||.+|-.. .-..|++-++..+.+ | +..|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence 34455666666676655 65656 45578999999999999999999998877 666677777666633 3 88899
Q ss_pred HHHHHHHHhhhhhhcc-----chh-------HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 100 ATCISTVSSLSPRVGA-----SAF-------VTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 100 ~Ac~~aLg~LAe~l~d-----~~~-------~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
-.|+.++.-+.-...- ... ..+++-+...|. ..++.+|..|+-+++++.=+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD-SENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Confidence 9999999888766542 111 237777777774 44778999999999998765
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=61.59 Aligned_cols=206 Identities=14% Similarity=0.158 Sum_probs=153.6
Q ss_pred CChhHHHHHHHHHHHHHhhc----CCCChH---HHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---------------
Q 007424 17 SDRDTYSQAAKELDSIAATV----DPTLLP---TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--------------- 74 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L----~pe~ip---~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--------------- 74 (604)
|..|-.-+|.+.|--+.+.| .|+..+ .||.+|. + |...+.+..+|.++....
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls----~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riL 859 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLS----G--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRIL 859 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcC----C--ccccchHHHhhHhhhccChHHhhhccccchhHH
Confidence 34455666776664444443 555544 4444443 2 567778888898873322
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
+-.-+.-.|+|.+++.+.-.+..++.--+.+|..+-.+... +.+..+++.|+++| +-.|..++..+-.|+.-++.
T Consensus 860 ykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 860 YKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHH
Confidence 22335677899999999966666777777777776666644 23556899999999 67888899999999999888
Q ss_pred hcCCCChhhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHH
Q 007424 151 AAQDPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEA 225 (604)
Q Consensus 151 ~a~d~i~~yL~~L~~RL~klL~s~~---~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDa 225 (604)
..+.-..+|+..+.|.++-+=.+++ --++..+|.+++++.. .- ....||-+.++..|...|.+.---+|+.|+++
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 8888788999999999999887775 4588999999999886 33 33359999999999999999999999999998
Q ss_pred HHHH
Q 007424 226 LWRL 229 (604)
Q Consensus 226 Lg~L 229 (604)
=+.-
T Consensus 1019 R~~W 1022 (1030)
T KOG1967|consen 1019 RQNW 1022 (1030)
T ss_pred hhhh
Confidence 6543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0062 Score=42.86 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 203 LVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 203 lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
++|.+.+.+.+++|.+|.+|+.+|+.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999999863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.024 Score=50.15 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=65.9
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhhhc-ccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q 007424 49 LSTNSSDKPGVRKECIHVIATLSNSHN-LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSD 127 (604)
Q Consensus 49 ~e~~ss~kp~~RKaaI~lLGvLae~h~-i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~e 127 (604)
.....++.+++|-+|+..|.-|.+... ..-++++|+......|+|+|+-|.-+|..+++.|++...+ ..++-|++
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~~L~~ 84 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLPILLD 84 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHHHHHH
Confidence 344567789999999999999999884 6778999999999999999999999999999999999732 36666666
Q ss_pred HHc
Q 007424 128 ALF 130 (604)
Q Consensus 128 aL~ 130 (604)
...
T Consensus 85 ~y~ 87 (92)
T PF10363_consen 85 EYA 87 (92)
T ss_pred HHh
Confidence 653
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.025 Score=56.08 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh----
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA-AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG---- 191 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~-a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~---- 191 (604)
+++-+|+-+++-|.....| -.--|..+...+++. .++.+++.+++|+.-|-++|++.+..+..+.|.++.-++.
T Consensus 35 dy~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3556888899999544444 444556666677777 7788899999999999999999999999999998888742
Q ss_pred cCcCcCCchHHHHHHHHhhhcCC-----------cHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 192 SGAVDGSGLKGLVSCLLGFLSSQ-----------DWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~s~-----------Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
+|.+..||+.+++|.+.-|.... .-.++-...|+|..|-...| ++|...
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nI 174 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINI 174 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHH
Confidence 45555699999999998666432 24556667778888877777 666543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.16 Score=62.94 Aligned_cols=146 Identities=11% Similarity=0.202 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDK 94 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDp 94 (604)
-|+|+++.++..| |.+-+-.+ |-++|..|.-....+.+..|--|+++|..+++.- .|. -.+.+-..|..|+.|+
T Consensus 792 ~d~~~a~li~~~l---a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL-~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYL---AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL-SRPDVQEAVHGRLNDS 867 (1692)
T ss_pred ccchhHHHHHHHH---HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh-cCHHHHHHHHHhhccc
Confidence 3566666666544 22223333 7778888887777888999999999999999977 332 3466778999999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 95 NSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
..+||+||++=+|++.-.. +... -|..-+.+-+. |..-.|...+---|-.+++.-++- +..+.+|.|++.-.
T Consensus 868 sasVREAaldLvGrfvl~~--~e~~~qyY~~i~erIl-DtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSI--PELIFQYYDQIIERIL-DTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRV 940 (1692)
T ss_pred hhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHh
Confidence 9999999999999887664 2211 27777777774 445567788888888888876553 33344444444333
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=56.53 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH---HHHcCcchhhhhhHHHHHHH--
Q 007424 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL---AVVEKDAVPEFKGKCLKIFE-- 249 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L---A~~~ge~f~py~~~~i~~Le-- 249 (604)
.|-|.......+-. .++....|.++++|..|...|...|-++..+++.+|..| ...+|+.+-||-.+++.+|+
T Consensus 55 ~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 55 RFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred HHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66677666666653 234445699999999999999999999999999999999 66889999999998888888
Q ss_pred -hcc--------CcchhHHHHHHHHHHHHHHhCCCC
Q 007424 250 -SKR--------FDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 250 -~cR--------fDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
+++ |.|-+.++|.+.++|+++-+-.|.
T Consensus 133 ~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 133 KNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred HhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 233 467789999999999999876654
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.2 Score=60.33 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=125.0
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD- 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i- 156 (604)
.+..-.|.+.+.+|+ .+|+++.++++.++.-+-. ..+.. ++.-.+..+-...+..+..|-.+++..+ +...
T Consensus 676 e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~l----p~~~i 750 (1133)
T KOG1943|consen 676 ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVL----PSELI 750 (1133)
T ss_pred HHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccC----cHHhh
Confidence 334445556667888 9999999999999887754 22222 3344444553333445555655555443 3222
Q ss_pred -hhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cC-----cCcCCchHHHHHHHHhhhcCC----cHHHHHHHHH
Q 007424 157 -AGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SG-----AVDGSGLKGLVSCLLGFLSSQ----DWAARKAAAE 224 (604)
Q Consensus 157 -~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag-----~~f~pyf~~lm~~L~e~L~s~----Dw~lRkaAaD 224 (604)
.++...+|..++..+-+. ...++.+.+.++..+.. .+ +.+..|++.++.+|.+|.++. -..+|++|+-
T Consensus 751 ~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~ 830 (1133)
T KOG1943|consen 751 HRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMK 830 (1133)
T ss_pred chHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHH
Confidence 245566777777777666 56677777776666554 22 223478888889999998764 3778999999
Q ss_pred HHHHHHHHc--Ccchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 225 ALWRLAVVE--KDAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 225 aLg~LA~~~--ge~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+|..+-... ++.|.+. ...|+.-|=.-=+|||+.-|+-+..+++..
T Consensus 831 al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 831 ALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 999998855 3677664 466676677788899999999988888765
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.99 Score=47.07 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=144.4
Q ss_pred ChhHHHHHHHHHHHHHhhcCCC-----ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhc
Q 007424 18 DRDTYSQAAKELDSIAATVDPT-----LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF 91 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe-----~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrL 91 (604)
|..++.-|+..|-.+...+|++ ++..++..+.+-.. +...=..++..+-.|..-. +-.....+|+..|.+..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 4446777888888888888854 36777777776663 3334444477777777544 44556777777777755
Q ss_pred cCCC--hhHHHHHHHHHHhhhhhhcc--chh-HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 92 RDKN--SALQATCISTVSSLSPRVGA--SAF-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 92 kDpD--s~VR~Ac~~aLg~LAe~l~d--~~~-~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
.-+. ..+|..+..-+-.|.++..+ ... ..|+.-++.++-||.||---.-++--+..++...+ +....+.
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~------~~~~~e~ 163 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD------ISEFAED 163 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc------cchhHHH
Confidence 4433 35798888888888777532 111 13888888888889999766666766666666543 1334444
Q ss_pred HHHHhc--------CC---ch-----hHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 167 LERLLK--------SE---VF-----KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 167 L~klL~--------s~---~~-----kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
++..+. .| .+ ..|.++..|+. +... |.+.++|.|.+-|.++.-.++.-++++|..-.
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~----s~~~---fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS----STPL---FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc----CcHh---hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 444442 11 11 24444444444 2222 33568999999999998889999999999988
Q ss_pred HHcC-cchhhhhhHHHHHHH
Q 007424 231 VVEK-DAVPEFKGKCLKIFE 249 (604)
Q Consensus 231 ~~~g-e~f~py~~~~i~~Le 249 (604)
...| +.+.||...+...|.
T Consensus 237 ~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 237 ENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHCCHHHHHHHHHHHHHHHH
Confidence 8887 788999888877765
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.16 Score=49.00 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=88.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccc
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~ 116 (604)
+..+...|.....+..+..|-.|+.+++++++.+ .+..|-...+..+++-|+.+++ .+..+|+.++..|-.++.+-
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7778888888888888999999999999998885 5556667777777777777776 58999999999999988752
Q ss_pred h----------hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 117 A----------FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 117 ~----------~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
| ...|+.+++..+- + ......+.-+|..++..-+....++..++-.-+..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~-~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQ-D--SSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 2 2225555555541 1 34555666667777776555555555554444433
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.068 Score=51.59 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=85.4
Q ss_pred hHHHHHhhhhcCCCC-CCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhh--ccCCChhHHHHHHHHHHhh--hhhhcc
Q 007424 41 LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSHNLSPYITKIINSITRN--FRDKNSALQATCISTVSSL--SPRVGA 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~-kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~Ivrr--LkDpDs~VR~Ac~~aLg~L--Ae~l~d 115 (604)
.|.||..|.....+. .+..|+|++++||+|... .||.-|.+..-... -.+.+....+......+.. .+..
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL---DP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~-- 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL---DPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY-- 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc---CcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH--
Confidence 566666665553333 378999999999999764 46665532211111 1122222333333222221 1111
Q ss_pred chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 116 SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 116 ~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+.. .+.-|+..|-+..-......+..|+-.++..++....+||++++|.++..+.+.....+..++.-++.++.
T Consensus 83 --y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 --YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 112 45556665522222334457788888888877777799999999999999986655777777777776653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.68 Score=54.36 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=126.5
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHH--------HHHH
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCI--------STVS 107 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~--------~aLg 107 (604)
.|+-+.+|++.+.+...+..+++||.||.+++.+=... .+.|--|.|+...+-+=+||. --|+|-. .|+.
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl~ 206 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERALN 206 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHHH
Confidence 45557888999999999999999999999999986655 667888999887776555554 1233321 1222
Q ss_pred hhhhhhcc-----------------------chhHH-HHHHHHHHHcc----------------CCChhHHHHHHHHHHH
Q 007424 108 SLSPRVGA-----------------------SAFVT-MLKLLSDALFT----------------EQDTNAQVGAALCLAA 147 (604)
Q Consensus 108 ~LAe~l~d-----------------------~~~~s-llkPL~eaL~~----------------eqdk~vQ~~AA~cLaa 147 (604)
-+.....+ +.... |++-++..|+. .+++.+-.+||.|+-.
T Consensus 207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 207 YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYID 286 (948)
T ss_pred HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHH
Confidence 22222111 01111 45555555532 3467788899999877
Q ss_pred HHhhcCCCC----------------hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-------------------
Q 007424 148 TIDAAQDPD----------------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS------------------- 192 (604)
Q Consensus 148 lIE~a~d~i----------------~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a------------------- 192 (604)
+++...|.- ...+..|.--++.+|+++++.++.-.++.+--++..
T Consensus 287 l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccc
Confidence 776644321 122455666677888888776654444432222211
Q ss_pred --------------------CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHH
Q 007424 193 --------------------GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (604)
Q Consensus 193 --------------------g~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~L 248 (604)
.-.|+.+...+++.|.+|+++.+-. +|.+.|..+-.+. +.|+..+..+|.-|
T Consensus 367 ~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~---aas~vl~FvrE~i-ek~p~Lr~~ii~~l 438 (948)
T KOG1058|consen 367 EESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEA---AASDVLMFVREAI-EKFPNLRASIIEKL 438 (948)
T ss_pred cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHH---HHHHHHHHHHHHH-HhCchHHHHHHHHH
Confidence 1224566677888899999877654 5777777766644 45555555554443
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.46 Score=55.89 Aligned_cols=231 Identities=14% Similarity=0.146 Sum_probs=130.1
Q ss_pred cCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 36 VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 36 L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
|+.++ +--+.++|..-..+++-++-=-|+-+||.+|.. ...+-+.|-|.+.|+-+++.||.=|+-++.++-...
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 35555 455667777777777767666677777766442 234455556666678888888887776666665554
Q ss_pred ccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--------------------------------ChhhH
Q 007424 114 GASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--------------------------------DAGKL 160 (604)
Q Consensus 114 ~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~--------------------------------i~~yL 160 (604)
+.... |+.+--..| .+.+..|-.+..--+-.+|+..++. ..|+|
T Consensus 174 --P~l~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 174 --PDLVEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred --chHHHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 22223 444444444 4444443332222223333321110 12445
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-------cCcCc--------------CCchHHHHHHHHhhhcCCcHHHH
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-------SGAVD--------------GSGLKGLVSCLLGFLSSQDWAAR 219 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-------ag~~f--------------~pyf~~lm~~L~e~L~s~Dw~lR 219 (604)
+--+-||+++|.+.+-.+....-..++=++. +|.+. .+-..-.+.+|..||.+.|-.+|
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee
Confidence 5555555566655554444443344443332 12111 12233456777888888888888
Q ss_pred HHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc-------------cCcchhHHHHHHHHHHHHHHhC
Q 007424 220 KAAAEALWRLAVVEKDAVPEFKGKCLKIFESK-------------RFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 220 kaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c-------------RfDKvK~VRda~~~AL~~wK~i 273 (604)
=.|+.+|..+......+...+...+++.|+.- +.=+-.-||.-|.|.|..+-..
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS 397 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc
Confidence 88888888887777778888888888877711 1112234666666666666544
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.1 Score=53.33 Aligned_cols=226 Identities=12% Similarity=0.096 Sum_probs=148.9
Q ss_pred HHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH
Q 007424 8 SVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (604)
Q Consensus 8 rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L 80 (604)
+.-.++..+.|+. +.-.|+++|..++++=.+.+ -.-+|....++..+.++++==.||+.+..||+.+ .|-
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il--- 804 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL--- 804 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH---
Confidence 3455677777776 77889999999998654444 2556777778888899999999999999999986 332
Q ss_pred HHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCC
Q 007424 81 TKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 81 ~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
|.+.......=+- +|-.++ .-+|++.++... ++... |.-+|+...+ .+++-...+.++..|..++....-
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lk--VGEai~k~~qa~--Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLK--VGEAILKVAQAL--GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHHHhcccCCCccceeh--HHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 3333322221111 233222 115555555554 23223 5666666554 455545678888888888887654
Q ss_pred CChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHh-cCcCcCC----chHHHHHHHHhhhc-CCcHHHHHHHHHHHH
Q 007424 155 PDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGS----GLKGLVSCLLGFLS-SQDWAARKAAAEALW 227 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~-ag~~f~p----yf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg 227 (604)
..-..+.++...+..+...+ .+.+|-+++..|..+-. .|....| |+-.+...+..+.. .+|=.+|.-|+.+|-
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 44457888888888888766 78899999998887775 5544445 33334444445554 456778888999988
Q ss_pred HHHHHcC-cchhhh
Q 007424 228 RLAVVEK-DAVPEF 240 (604)
Q Consensus 228 ~LA~~~g-e~f~py 240 (604)
.+-.+.. ..++|-
T Consensus 961 ei~a~l~n~~~~pq 974 (982)
T KOG4653|consen 961 EIQAALENDDDSPQ 974 (982)
T ss_pred HHHHHHHhcccChh
Confidence 8877765 666663
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.27 Score=58.05 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=95.1
Q ss_pred HHHHHhhcC-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH-HHHHHHhhccCCChhHHHHHHHHH
Q 007424 29 LDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK-IINSITRNFRDKNSALQATCISTV 106 (604)
Q Consensus 29 LD~lA~~L~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k-Il~~IvrrLkDpDs~VR~Ac~~aL 106 (604)
++.|..++. .+.++-+++-+.....+-+...||=+..-+-+.++.+ |++-. -+.++.+-|+||++-+|..|..++
T Consensus 40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lLavNti~kDl~d~N~~iR~~AlR~l 116 (757)
T COG5096 40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALLAVNTIQKDLQDPNEEIRGFALRTL 116 (757)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 555555553 3337666666655555667788888888777777776 54333 256888888889999998888888
Q ss_pred HhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH--HHHHHHHhcCCchhHHHHHH
Q 007424 107 SSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM--EVRLERLLKSEVFKAKAAGL 183 (604)
Q Consensus 107 g~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L--~~RL~klL~s~~~kaK~alL 183 (604)
+.|-..- +.. ++.|+-..+ ++.++.|...||+|+.++-+--+ .+++.+ +.-+-.++...+..+++.++
T Consensus 117 s~l~~~e----l~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 117 SLLRVKE----LLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK----DLYHELGLIDILKELVADSDPIVIANAL 187 (757)
T ss_pred HhcChHH----HHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH----hhhhcccHHHHHHHHhhCCCchHHHHHH
Confidence 8875442 112 566666666 67778888888888888876533 233333 33444555555666665544
Q ss_pred HHHH
Q 007424 184 VVVG 187 (604)
Q Consensus 184 saIG 187 (604)
.++.
T Consensus 188 ~sl~ 191 (757)
T COG5096 188 ASLA 191 (757)
T ss_pred HHHH
Confidence 4443
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.41 Score=53.38 Aligned_cols=208 Identities=12% Similarity=0.126 Sum_probs=121.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccc-
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGAS- 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~- 116 (604)
+..++..+....+..+.+.=|.-+|.+.++.+.. +....|++++..+..-.+. ++|..-+=+.+++|.+-.+..+.
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 4556666655445667788888888888876665 3223333333333333333 46789999999999999987652
Q ss_pred h-----hHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHHh--cCCchhHHHHHHHHHH
Q 007424 117 A-----FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLL--KSEVFKAKAAGLVVVG 187 (604)
Q Consensus 117 ~-----~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~klL--~s~~~kaK~alLsaIG 187 (604)
+ +.. +++|+...| .+.-..-.-..+.-|+-++|.-+ +.+.+....|.+.|+.-- +... --++++..+.
T Consensus 108 ~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g--niPalvrLL~ 184 (435)
T PF03378_consen 108 PEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG--NIPALVRLLQ 184 (435)
T ss_dssp HH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT--THHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC--CcCcHHHHHH
Confidence 2 333 555555555 33222234455666788888866 344344444444444221 1111 1267888888
Q ss_pred HHHhcCcC-c--CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHH----HhccCcc
Q 007424 188 SVIGSGAV-D--GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIF----ESKRFDK 255 (604)
Q Consensus 188 SiA~ag~~-f--~pyf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~L----e~cRfDK 255 (604)
+.+..+.. + ..+++.++...+..+.+ .|.. +.+.|.+|-...+ +.+.||...++.+| .+.|-+|
T Consensus 185 a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~----gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 185 AYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY----GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH----HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred HHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 87764433 2 27888999999888875 3544 7999999999887 77888877766654 5556665
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.61 Score=52.45 Aligned_cols=264 Identities=15% Similarity=0.092 Sum_probs=153.4
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~-----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
+-..++.+|..=....|...-++-|-.++++-|-++ +--|..++..++.+.++++|-.++.++|.++..|...|-
T Consensus 107 ~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pe 186 (728)
T KOG4535|consen 107 LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPE 186 (728)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHH
Confidence 334455666665555566666667777777777777 355778889999999999999999999999998855555
Q ss_pred HHHHHHH----------------HHhhccCCC------------------------------------------------
Q 007424 80 ITKIINS----------------ITRNFRDKN------------------------------------------------ 95 (604)
Q Consensus 80 L~kIl~~----------------IvrrLkDpD------------------------------------------------ 95 (604)
+.-.+.. -.+.|.|.+
T Consensus 187 i~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~ 266 (728)
T KOG4535|consen 187 VQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTY 266 (728)
T ss_pred HHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCcc
Confidence 5544432 224454443
Q ss_pred --hhHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHH
Q 007424 96 --SALQATCISTVSSLSPRVGA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-----AGKLGRMEVR 166 (604)
Q Consensus 96 --s~VR~Ac~~aLg~LAe~l~d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-----~~yL~~L~~R 166 (604)
+.||--|...|..||.|+.= .-+.-+..-+...+ ++.++.++..++.||+++...+.... ..-+..=+-+
T Consensus 267 ~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 267 EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 45888888899999888731 11112444444444 68899999999999999988864211 1111111112
Q ss_pred HH--------HHhcCCchhHHHHHHHHHHHHHhcC-cCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 167 LE--------RLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 167 L~--------klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
+. .+-++..+-.+.++-.++.+|-.+. ..| |.- -.++-.+..|-.+++--+|.+|+-+++.+....+
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l-pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l 424 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL-PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL 424 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC-CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence 22 2334445555555433333322211 111 221 1233344444434455566666666665544444
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..-.-+...|-+.+-..=|||---||+-+.-++.-+
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 222223334444444444487777888777666554
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.22 Score=54.28 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=114.8
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGA-----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+|+++..|+-.|.-||--|+.+++.++-.-.. +...-+++-|++.+ .+.++.++.-|.+||-.+---. +
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt-----~ 283 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDT-----E 283 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccc-----h
Confidence 56888899999999999999999999855421 22333788888877 6778889988888886553322 3
Q ss_pred hHHH-----HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH-HHHHHHhhhcCCc-HHHHHHHHHHHHHHHH
Q 007424 159 KLGR-----MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG-LVSCLLGFLSSQD-WAARKAAAEALWRLAV 231 (604)
Q Consensus 159 yL~~-----L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~-lm~~L~e~L~s~D-w~lRkaAaDaLg~LA~ 231 (604)
|..+ -+|-++++|.++..+.-.+-+.||.-|+-......+..+. .+.-|...|...| -+..-.|.++|.-||.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 4333 3567889998887776666777886555332111111111 2333455555444 3377889999999998
Q ss_pred HcCcchhhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 232 VEKDAVPEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 232 ~~ge~f~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
........+. .-.|..|-..-.|---.||+-+.-++..+
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 4432222221 12233333333488888999888877665
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.71 Score=53.53 Aligned_cols=207 Identities=13% Similarity=0.063 Sum_probs=113.6
Q ss_pred chhHHHHHHHHHHHhhhcccccHHHHHHH-HHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChh
Q 007424 58 GVRKECIHVIATLSNSHNLSPYITKIINS-ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTN 136 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h~i~p~L~kIl~~-IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~ 136 (604)
..|-.++...+.++....-.+|-++-+.- ++.-..|.|+.||.+|+++|=+|++ ..+-+ ....+-..+.| .+.+..
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~-~~~Y~~A~~~l-sD~~e~ 249 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLS-KACYSRAVKHL-SDDYED 249 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-ccccc-HHHHHHHHHHh-cchHHH
Confidence 34555555555554444333566655554 8888999999999999999999988 32211 12445555555 343444
Q ss_pred HHHHHHHHHHHHHhhcC-CCC------hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch--------
Q 007424 137 AQVGAALCLAATIDAAQ-DPD------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-------- 200 (604)
Q Consensus 137 vQ~~AA~cLaalIE~a~-d~i------~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-------- 200 (604)
|..+|...+ -+.-+.. -+. ........-+++..++.-+..++..+.-++|.+-++...|. +-+
T Consensus 250 VR~aAvqlv-~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~l 328 (823)
T KOG2259|consen 250 VRKAAVQLV-SVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRL 328 (823)
T ss_pred HHHHHHHHH-HHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhh
Confidence 555544333 2222211 000 11223334444455544444444444444444333321110 000
Q ss_pred --------------------------------------HHHH-----HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 201 --------------------------------------KGLV-----SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 201 --------------------------------------~~lm-----~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
..+| ..++.-|.++-.++|++|.+.|+.||..-+.
T Consensus 329 RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-- 406 (823)
T KOG2259|consen 329 RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-- 406 (823)
T ss_pred hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC--
Confidence 0111 1122233446689999999999999986543
Q ss_pred hhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 238 PEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 238 ~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
|+.+++..|-.-=.|-|-.||--++.||..+-.
T Consensus 407 --FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 407 --FAVRALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred --cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 445566666555569999999888777765543
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.33 Score=48.16 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhhhhccchhHH---------------HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--------
Q 007424 98 LQATCISTVSSLSPRVGASAFVT---------------MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD-------- 154 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~s---------------llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d-------- 154 (604)
||.++...+..++.......++. .-.+|+..++.|.++.++.+|+.+|+.++|+...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 78888888888888854311111 3445666676788999999999999999998411
Q ss_pred C--C---h-------hhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcC--cCcC-CchHHHHHHHHhhhcCCcHHH
Q 007424 155 P--D---A-------GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSG--AVDG-SGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 155 ~--i---~-------~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag--~~f~-pyf~~lm~~L~e~L~s~Dw~l 218 (604)
. - . ..+.++=..|..+|..+ +..+-.+++-++..++++- .... .++..++..+..++.+.|-.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0 0 0 11222333466666666 6666678888999888753 2333 677889999999999999999
Q ss_pred HHHHHHHHHHHHHHc
Q 007424 219 RKAAAEALWRLAVVE 233 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ 233 (604)
|-++.-+|+.+..+.
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999988754
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.28 Score=51.33 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=109.6
Q ss_pred CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 38 pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
.+.+|++..-+.+. ++.|-+|-++-.+||.+. + .+.++|.|+ .+||-..|+..|.-|+.++-..-.-.
T Consensus 66 ~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~~~~~~l~k~-------~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DPESLEILTKY-------IKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--chhhHHHHHHH-------hcCCccccchHHHHHHHHHHHhhccc
Confidence 34477777777754 557888888888888776 3 444455444 57888888988888888874332100
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHH---HHHHhcC
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVV---GSVIGSG 193 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaI---GSiA~ag 193 (604)
.. .--.|... .++.+..-.+. +..+=+.+-|.-.+.+.+. .-++.+=+...-.+-.+++.-+ .++...+
T Consensus 135 ~~-~~~~p~~S---vdPa~p~~~ss---v~~lr~~lld~t~~l~~Ry-~amF~LRn~g~EeaI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 135 KI-ANSSPYIS---VDPAPPANLSS---VHELRAELLDETKPLFERY-RAMFYLRNIGTEEAINALIDGLADDSALFRHE 206 (289)
T ss_pred cc-cccCcccc---CCCCCcccccc---HHHHHHHHHhcchhHHHHH-hhhhHhhccCcHHHHHHHHHhcccchHHHHHH
Confidence 00 00001000 11111100111 1111111111111222222 1122222222111111111111 1111111
Q ss_pred cCc--CC-chHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 194 AVD--GS-GLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 194 ~~f--~p-yf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
.+| ++ --+..||.|++-|.+ +.--+|--|+++||.||. +.|+++|...=-|-...||++..-||.
T Consensus 207 vAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 207 VAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111 11 113458888888854 678999999999999987 578888888888999999999999998
Q ss_pred HHH
Q 007424 269 AWK 271 (604)
Q Consensus 269 ~wK 271 (604)
.+-
T Consensus 277 m~e 279 (289)
T KOG0567|consen 277 MLE 279 (289)
T ss_pred HHH
Confidence 764
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.4 Score=52.77 Aligned_cols=190 Identities=16% Similarity=0.113 Sum_probs=128.6
Q ss_pred hHHHHHhhhhc-CCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch--
Q 007424 41 LPTFLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-- 117 (604)
Q Consensus 41 ip~fL~~L~e~-~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-- 117 (604)
+..||...... ..+..++.|-.+++++.-.|..|.+.|.+|+|+-.|.....+...-|-.+..+||...+..=.+-+
T Consensus 488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as 567 (1005)
T KOG2274|consen 488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS 567 (1005)
T ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh
Confidence 56666655433 445567899999999998888778899999999999999999888888888888888877643311
Q ss_pred hHHHHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh----HHHHHHHHHHHHHh
Q 007424 118 FVTMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK----AKAAGLVVVGSVIG 191 (604)
Q Consensus 118 ~~sllkPL~eaL~~--eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k----aK~alLsaIGSiA~ 191 (604)
..+.+-|++-++|- ..||.|-.-+=-|+..+++.+. --.+|...++|-|+..|..++-+ .-..++..|..+..
T Consensus 568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 22367777777774 4578777777778888888642 12367888999999999888633 33445666665555
Q ss_pred cCcCcC--CchHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHH
Q 007424 192 SGAVDG--SGLKGLVSCLLGF-LSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 192 ag~~f~--pyf~~lm~~L~e~-L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.+.--. -....+.|.+..+ |.++|-++=-.|-|||.++-.
T Consensus 647 ~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 647 NTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred cCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 432211 1112233333333 345666666667777766544
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.6 Score=50.10 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=102.8
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|-.-.|+=.-.|..+|+.=|.+.+- .++.+....+++++..|=.||+.++.+-.. ..++.+++.|.+.|.|+.+.
T Consensus 68 d~ElKrL~ylYl~~yak~~P~~~lL-avNti~kDl~d~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ay 142 (757)
T COG5096 68 DVELKRLLYLYLERYAKLKPELALL-AVNTIQKDLQDPNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAY 142 (757)
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHH-HHHHHHhhccCCCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHH
Confidence 4445566666677777765543333 367777778899999999999999988653 46788899999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHH-HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 98 LQATCISTVSSLSPRVGASAFVTM-LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sl-lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
||+.|+.|++.+=+.--+ =.+.. +--+...|..|.+|.|-..|..+|..+.+. ...+|+..++.++-.+.
T Consensus 143 VRk~Aalav~kly~ld~~-l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 143 VRKTAALAVAKLYRLDKD-LYHELGLIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQLD 213 (757)
T ss_pred HHHHHHHHHHHHHhcCHh-hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhhcc
Confidence 999999999987543210 01222 333444555788999887777777766654 34578777777666544
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.4 Score=50.12 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-c---------ccccHHHHHHHH
Q 007424 21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-N---------LSPYITKIINSI 87 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~---------i~p~L~kIl~~I 87 (604)
+..-|++.|-.+...+ .|.. +..|+..+........+..|..|++++|.++..+ . +..+++.+...+
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 3344555555555555 2332 6777776655445556789999999999998743 1 122344444444
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL 167 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL 167 (604)
....++.|...+.+++.|||.++...+ ...+.|++..= .+....++..|..||..+.+..+ .++.+.+
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~----i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l 519 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSS----IKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDP-------RKVQEVL 519 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhH----HHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHH
Confidence 444455677789999999999987641 12455554410 12355688999999998877544 3344455
Q ss_pred HHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHH
Q 007424 168 ERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAA 223 (604)
Q Consensus 168 ~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAa 223 (604)
+.++.+. +..+|-+++-++- .. .|-. ..+..|.+.+. +.+-+++....
T Consensus 520 ~~i~~n~~e~~EvRiaA~~~lm---~t----~P~~-~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVLVLM---ET----KPSV-ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHcCCCCChHHHHHHHHHHH---hc----CCCH-HHHHHHHHHHhhcCcHHHHHHhH
Confidence 5555544 6667755444333 11 1222 45566666664 45677766543
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.12 Score=46.94 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc
Q 007424 58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d 115 (604)
..||.+|+++|.+.+.+ .+...+|+|+.++...|..|+ +|..|+.+-..|...+.+
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence 55999999999998877 999999999999999998776 999999999999999854
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.88 E-value=7.2 Score=42.50 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=127.9
Q ss_pred HHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccC--CChhHHHHHHH
Q 007424 31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRD--KNSALQATCIS 104 (604)
Q Consensus 31 ~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkD--pDs~VR~Ac~~ 104 (604)
.++..|+.+....|+....+...+++ .-+--+...+-+|+... ++..+.+..+-.++..+.+ +..+|-.=.+.
T Consensus 78 ~i~~~l~~d~~~~~i~~~i~~l~~~~-~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 78 EIVSTLSDDFASFIIDHSIESLQNPN-SPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred HHHhhCChHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 35566666554433333333333222 12223333344443322 5666666655565655665 33333333333
Q ss_pred HHHhhhhhhcc---chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--------------CCCC--hhhHHHHHH
Q 007424 105 TVSSLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--------------QDPD--AGKLGRMEV 165 (604)
Q Consensus 105 aLg~LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a--------------~d~i--~~yL~~L~~ 165 (604)
++-.|.....+ ......+++|+..|++ ..+.++..|..++..+.-.+ .... ..|...+++
T Consensus 157 i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~-~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 157 IYKRLLSQFPQQMIKHADIWFPILFPDLLS-SAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 44444444332 1122267777777763 33344443333332222111 1111 146777999
Q ss_pred HHHHHhcC-CchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhh--
Q 007424 166 RLERLLKS-EVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE-- 239 (604)
Q Consensus 166 RL~klL~s-~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~p-- 239 (604)
||.+++.+ ..++.-.-+=+++-.+..... .-.+|+...+...+.|+.+.|-++|.+|..+...+..+.. +...+
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~ 315 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKR 315 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHH
Confidence 99999988 444432222222222221111 1238999999999999999999999999999999988554 22211
Q ss_pred ---hhhHHHHHHHhccCcchh-HHHHHHHHHHH
Q 007424 240 ---FKGKCLKIFESKRFDKVK-VVREVMNKMIE 268 (604)
Q Consensus 240 ---y~~~~i~~Le~cRfDKvK-~VRda~~~AL~ 268 (604)
....+.-.++..+-+|+| .||+.+...+.
T Consensus 316 l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~ 348 (372)
T PF12231_consen 316 LKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLC 348 (372)
T ss_pred HHHHHHHHHHHhCccccccccHHHHHHHHHHHh
Confidence 113345567777788888 89998877553
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.78 E-value=2.4 Score=49.71 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=79.8
Q ss_pred cCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 36 VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 36 L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
+|++- +..++.+|.-...+.+-.+|.-++.+|+.+...- +=-.-..+|.-.+..||.|-.+.||--|+.+|..+-+
T Consensus 76 ~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 76 LDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred cCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 34444 6788888888888888899999999999997633 2223467888899999999999999999999998865
Q ss_pred hhccchhHHHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 112 RVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 112 ~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
.-.+... -...-+...+..++++.|..+|-.|+
T Consensus 156 d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 156 DPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 3222211 13444444444567777888888877
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.63 Score=48.36 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=112.0
Q ss_pred HHhhccC-CChhHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--CChhhHH
Q 007424 87 ITRNFRD-KNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD--PDAGKLG 161 (604)
Q Consensus 87 IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d--~i~~yL~ 161 (604)
++..|+. .|+.++..++.|+|..+.+-..+.+.. =..+++..|+...++.++..|..||+.+-.+.+. .+..|++
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 3444553 678999999999999988864433222 3445555555788899999999999877444322 2235666
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH---HcCcchh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV---VEKDAVP 238 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~---~~ge~f~ 238 (604)
.+|..+.-. .-+..++-+.+.+++.+.- -.....-+...|+.+...|...+-.+|-.+.-+|.-|+. ..++.+.
T Consensus 97 ~Vc~~~~s~--~lns~~Q~agLrlL~nLtv-~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 97 QVCEETVSS--PLNSEVQLAGLRLLTNLTV-TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHccCC-CcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 666655431 1145566677777776532 222223445567888888888888999999999999887 2234444
Q ss_pred hhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHhC
Q 007424 239 EFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQV 273 (604)
Q Consensus 239 py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i 273 (604)
.-. .+.+..|+.+ .=++...++|-..-.|
T Consensus 174 ~q~~~~~~~Lf~~~------~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 174 AQVLSSFLSLFNSS------ESKENLLRVLTFFENI 203 (254)
T ss_pred ccchhHHHHHHccC------CccHHHHHHHHHHHHH
Confidence 322 3445555521 1245556666666665
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.19 Score=45.45 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=57.6
Q ss_pred CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
....|+.+|+++|.+.+.+ .+.+.+|+|+.++...|..+ .+|..|+.+-..|...+.+.....++..++.++
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3477999999999998866 99999999999999999888 799999999999999985433223444444443
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=94.56 E-value=7 Score=44.94 Aligned_cols=221 Identities=16% Similarity=0.083 Sum_probs=140.3
Q ss_pred HHHHhhhc-CChhHHHHHHHHHHHHHhhcCCCC------------h-HHHHHhhhhcCCCCCCc-hhHHHHHHHHHHHhh
Q 007424 9 VNGLLNKL-SDRDTYSQAAKELDSIAATVDPTL------------L-PTFLSCILSTNSSDKPG-VRKECIHVIATLSNS 73 (604)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~lA~~L~pe~------------i-p~fL~~L~e~~ss~kp~-~RKaaI~lLGvLae~ 73 (604)
+-+|+.=| +-+||.|.|. |-.+.+-++++. | +.||.-|.-+...+... ..-..-+++.+|+..
T Consensus 7 l~~c~~lL~~~~D~~rfag--L~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAG--LLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHhccCCcHHHHHH--HHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33444444 2448888876 333333333222 1 46788787665544322 222222445555555
Q ss_pred h-----cccccHHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccch--hHH--HHHHHHHHHccCCChhHHHHHHH
Q 007424 74 H-----NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASA--FVT--MLKLLSDALFTEQDTNAQVGAAL 143 (604)
Q Consensus 74 h-----~i~p~L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~--~~s--llkPL~eaL~~eqdk~vQ~~AA~ 143 (604)
+ .-.|.+-.-+|.++.-+..++. .+-.=|...|..++.+= ++. +.. -++.|++++.. .+.....|..
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence 5 5568888999999999988777 77777777777777432 222 111 78899999853 3344555666
Q ss_pred HHHHHHhhcCCCC----hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc---Cc----CCchHHHHHHHHhhhc
Q 007424 144 CLAATIDAAQDPD----AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA---VD----GSGLKGLVSCLLGFLS 212 (604)
Q Consensus 144 cLaalIE~a~d~i----~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~---~f----~pyf~~lm~~L~e~L~ 212 (604)
.|..++-..+... ...+..++++|.+.+...+-..|-.++..++.+-.-.. .- ......+...|...|.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 6655555543221 24567888999999987777778888888888774221 11 1455566677777776
Q ss_pred CC-cHHHHHHHHHHHHHHHHHcC
Q 007424 213 SQ-DWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 213 s~-Dw~lRkaAaDaLg~LA~~~g 234 (604)
+. .-.-|..|....+.|..+.|
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhC
Confidence 53 56679999999999999888
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.5 Score=54.78 Aligned_cols=210 Identities=21% Similarity=0.148 Sum_probs=141.9
Q ss_pred HHHHHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCCh----HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cc
Q 007424 5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLL----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL 76 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~i----p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i 76 (604)
+...+..++-||+=+| |.--|+++|-.+..+.+.+.. |.+...+.+..-+++..+|......+..+.... .+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777887666 999999999999998876663 334444456677778899999999999998888 89
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc-----c---------------C---
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF-----T---------------E--- 132 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~-----~---------------e--- 132 (604)
+|||..+||.+.=...|++..|..||..++-...+.-- .+... ++.|-+..+. . +
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek-~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK-DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhh-hHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 99999999999999999999999999998877665211 12111 3333333321 0 0
Q ss_pred CChhHHHHHHHHHHHHH-hhcCCCChh---h-HHH--HHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcC-CchHHH
Q 007424 133 QDTNAQVGAALCLAATI-DAAQDPDAG---K-LGR--MEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDG-SGLKGL 203 (604)
Q Consensus 133 qdk~vQ~~AA~cLaalI-E~a~d~i~~---y-L~~--L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~-pyf~~l 203 (604)
.-+-+-..+-.+|.+++ +.+.+.... + +.. --..+-+++++++..+|.++..++-++.+ ....+. +.-..+
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l 277 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYL 277 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHh
Confidence 01235566777777777 333332222 1 222 33468899999998999999998888876 322223 222334
Q ss_pred HHHHHhhhcCCc
Q 007424 204 VSCLLGFLSSQD 215 (604)
Q Consensus 204 m~~L~e~L~s~D 215 (604)
.+.+.....+.|
T Consensus 278 ~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 278 KPVLLGSIDSLD 289 (1312)
T ss_pred hHHHHccccccc
Confidence 455555554444
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=3 Score=50.36 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=107.9
Q ss_pred HHHHHHHHH-hhcCCCC-hHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-----cccccHHHHHHHHHhhccCCCh
Q 007424 25 AAKELDSIA-ATVDPTL-LPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKNS 96 (604)
Q Consensus 25 A~~eLD~lA-~~L~pe~-ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-----~i~p~L~kIl~~IvrrLkDpDs 96 (604)
|.-.|-.++ .+++-.. +.-.+.+...... +..-++|=+|..+|-.+.+.+ ++.||+|.||..+.+..++-+.
T Consensus 482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En 561 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN 561 (1010)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch
Confidence 444555555 4453333 6666666665555 444699999999999984444 7999999999999999988775
Q ss_pred hHHH-HHHHHHHhhhhhhccchhHH-HHHHHHHHHc---c------CCChhHHHHHHHHH---HHHHhhcCCC--ChhhH
Q 007424 97 ALQA-TCISTVSSLSPRVGASAFVT-MLKLLSDALF---T------EQDTNAQVGAALCL---AATIDAAQDP--DAGKL 160 (604)
Q Consensus 97 ~VR~-Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~---~------eqdk~vQ~~AA~cL---aalIE~a~d~--i~~yL 160 (604)
-.-. .--.-++.+++.+ .|+.. ++..|..... . +.+..-+.+|..|| ..++..+.+- +..++
T Consensus 562 d~Lt~vme~iV~~fseEl--sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l 639 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCKFSEEL--SPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL 639 (1010)
T ss_pred hHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3322 2223345666766 56555 6666666543 1 11233556666666 4555554432 33444
Q ss_pred HH-HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---------------c----CCchHHHHHHHHhhhc
Q 007424 161 GR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---------------D----GSGLKGLVSCLLGFLS 212 (604)
Q Consensus 161 ~~-L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---------------f----~pyf~~lm~~L~e~L~ 212 (604)
.. +.|=+..+|++.-..+-.-+++.+-+.-..... | .-||...|+.|..|++
T Consensus 640 e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 640 EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 44 444455566555444433444433322211111 1 2677777888877775
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.1 Score=48.41 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=120.7
Q ss_pred hHHHHHhh---hhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 41 LPTFLSCI---LSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 41 ip~fL~~L---~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
+..++..+ ..+.++..+..|..|+--|..+++-. .+.++ . -|..++..|+++++.||..|++++|..+..=
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~-g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISL-G-GLVPLLGYLENSDAELRELAARVIGTAVQNN 155 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-c-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Confidence 45555552 22245556778888999999998876 22222 2 2334455899999999999999999999886
Q ss_pred cc-chhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH-HHHHHHHhcC--CchhHHHHHHHHH
Q 007424 114 GA-SAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM-EVRLERLLKS--EVFKAKAAGLVVV 186 (604)
Q Consensus 114 ~d-~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L-~~RL~klL~s--~~~kaK~alLsaI 186 (604)
.+ +.... ++..|+.+|..+..-.+...|-+|+-.+|.+-.+.....+.-- ..-|..+|.+ .+.+.|.=++-.|
T Consensus 156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 156 PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44 12221 8999999996555555778999999999998654433222110 2235566666 3455555556666
Q ss_pred HHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 187 GSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 187 GSiA~ag~~f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
+.+.+.-..-...+.. .-..+..+....+|+.+-.|.+++-++....
T Consensus 236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 236 SLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 6666532110001111 1233445556779999999999998887743
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.099 Score=57.01 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=80.5
Q ss_pred CChhHHHHHHHHH-HHHHhhcCCCChHHHHHhhhhc------CCCCCCchhHHHHHHHHHHHhhh--------ccccc--
Q 007424 17 SDRDTYSQAAKEL-DSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNSH--------NLSPY-- 79 (604)
Q Consensus 17 sDrDT~r~A~~eL-D~lA~~L~pe~ip~fL~~L~e~------~ss~kp~~RKaaI~lLGvLae~h--------~i~p~-- 79 (604)
+|-+|.|.|+.+| ..+++.......+.++..+... ..+.+|..+-.||.++|.++.-. .+.++
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 6777777666655 6788887655555655555443 44667888999999999995433 11111
Q ss_pred HHHHH-HHHHhhcc---CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 80 ITKII-NSITRNFR---DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 80 L~kIl-~~IvrrLk---DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
+..++ .+|.--|+ +..+.+|..|++.+..+..++.+.....+++.|+..| ..++..|...||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence 22222 22333344 3456799999999999999986544445888888888 677778999999885
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.64 Score=50.41 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=133.8
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHHHHh--hcCC-------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIAA--TVDP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN 72 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~--~L~p-------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae 72 (604)
+++..+-+.+..|-.+| .+..|+-....+-. +-|| -.+|.|+..+.+. +.-...-+|--+|..++.
T Consensus 68 q~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~---q~~mlqfEAaWalTNiaS 144 (526)
T COG5064 68 QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI---QRDMLQFEAAWALTNIAS 144 (526)
T ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc---chhHHHHHHHHHHhhhcc
Confidence 33343444444443233 55566666655432 1233 2267777777532 222344477788888888
Q ss_pred hhcccccH---HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCCh--hHHHHHHH
Q 007424 73 SHNLSPYI---TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDT--NAQVGAAL 143 (604)
Q Consensus 73 ~h~i~p~L---~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk--~vQ~~AA~ 143 (604)
|..-.+++ ---+|..++.|.+++--||+-++||||.+|-.-..-..+. .|.||+..|. ++.. ..-.-|..
T Consensus 145 Gtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~-ss~~~ismlRn~TW 223 (526)
T COG5064 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL-SSAIHISMLRNATW 223 (526)
T ss_pred CcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH-hccchHHHHHHhHH
Confidence 87111111 1245677888999999999999999999987653322222 7899999885 3333 34457788
Q ss_pred HHHHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchH-HHHHHHHhhhcCCcHHHHH
Q 007424 144 CLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLK-GLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 144 cLaalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~-~lm~~L~e~L~s~Dw~lRk 220 (604)
-|..++.+-..++ -.-..+.+|-|+||+.+.+..+-.-+.=||.=+.-.. +.....++ .+++.|.+.|++++-.+.-
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 8899998854443 4567888999999998876654322222222211111 11111111 2567789999888777666
Q ss_pred HHHHHHHHHHH
Q 007424 221 AAAEALWRLAV 231 (604)
Q Consensus 221 aAaDaLg~LA~ 231 (604)
-|+-++|-|.+
T Consensus 304 PalR~vGNIVT 314 (526)
T COG5064 304 PALRSVGNIVT 314 (526)
T ss_pred HHHHhhcCeee
Confidence 66666666544
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.7 Score=47.18 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=115.0
Q ss_pred HHHHhhhc-CChhHHHHHHHHHHHHHhhcCCCC-------hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cc---
Q 007424 9 VNGLLNKL-SDRDTYSQAAKELDSIAATVDPTL-------LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NL--- 76 (604)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~lA~~L~pe~-------ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i--- 76 (604)
.+..++-. .|-+...-|+++|..++.+++.-. +.+++. +..+.++..|+.|...+|.++.-- .+
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56667766 488899999999999999986433 344444 566778899999999999996544 11
Q ss_pred ---cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-H-----HHHHHHHHcc-CCChhHHHHHHHHHH
Q 007424 77 ---SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M-----LKLLSDALFT-EQDTNAQVGAALCLA 146 (604)
Q Consensus 77 ---~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-l-----lkPL~eaL~~-eqdk~vQ~~AA~cLa 146 (604)
.-.|.+++..+. +|.+-.||..++.|++.+-.+- ++-.. | +.-|.++|-. ..++..|..|+.=++
T Consensus 162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 224666655554 5555579999999999988775 22111 1 3445666632 256778888888889
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHH
Q 007424 147 ATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI 190 (604)
Q Consensus 147 alIE~a~d~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA 190 (604)
.+++.-...-...-...+++...-+.+. ++.++.+++.++-+..
T Consensus 237 ~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 237 LLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 9988754322233344555555555444 6667777777666655
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.27 Score=52.42 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcCcC-CchHHHHHHHHhhhc-----C-----CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHH
Q 007424 180 AAGLVVVGSVIGSGAVDG-SGLKGLVSCLLGFLS-----S-----QDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 180 ~alLsaIGSiA~ag~~f~-pyf~~lm~~L~e~L~-----s-----~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i 245 (604)
..++..+.|+-.--..|. ||+.++||.|.-||- + +-+++|+.|++.|+.+..-.+......+.++.
T Consensus 254 tTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvt 330 (450)
T COG5095 254 TTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVT 330 (450)
T ss_pred HHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHH
Confidence 445556666555456776 999999999999983 1 24889999999999988876655444544443
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.69 Score=49.96 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHHHh
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-------VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-------~~kaK~alLsaIGSiA~ 191 (604)
..|+.=+.+++.++ +.... ..||..+-. + +.++.|+|+|+..+... +...-..++..+.|+..
T Consensus 177 q~yf~~It~a~~~~-~~~~r---~~aL~sL~t--D----~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 177 QLYFEEITEALVGS-NEEKR---REALQSLRT--D----PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHhCC-CHHHH---HHHHHHhcc--C----CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 34777788888643 22222 123333211 1 23444555544444222 23333445666666664
Q ss_pred cCcCcC-CchHHHHHHHHhhhc----------CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHH
Q 007424 192 SGAVDG-SGLKGLVSCLLGFLS----------SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVV 259 (604)
Q Consensus 192 ag~~f~-pyf~~lm~~L~e~L~----------s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~V 259 (604)
=...+. ||+-.+||.+..|+. ++.|.+|..|+..|+.|..-.+........++++.|-.-=+|..+++
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 334444 999999999999993 35799999999999999998886555566666666665555766664
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.09 E-value=3.6 Score=48.60 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=104.3
Q ss_pred CCchhHHHHHHHHHHHhhh-cccc---cHHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH-NLSP---YITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDAL 129 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h-~i~p---~L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL 129 (604)
++.+...|++.++-+...- ..+| -++. |+++|+-.++++-.-++.-+|+.+..+.+...+..+-. .+......|
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4566777888888886622 2233 2333 45567777899999999999999999988876655433 555555556
Q ss_pred ccCCChhHHHHHHHHHHHHHhhc--CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHH
Q 007424 130 FTEQDTNAQVGAALCLAATIDAA--QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSC 206 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~a--~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~ 206 (604)
. +++-.|+.-||+||.-++-+. ++..-++++..|++|+.+-+.=...+ +-+++-+++. -..+..||.+.++..
T Consensus 509 ~-nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~---LS~vMe~fVe~fseELspfa~eLa~~ 584 (970)
T COG5656 509 K-NNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP---LSMVMESFVEYFSEELSPFAPELAGS 584 (970)
T ss_pred h-cCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH---HHHHHHHHHHHhHHhhchhHHHHHHH
Confidence 3 467779999999999998653 44445788999999998875433332 3344455443 345567999999988
Q ss_pred HHh
Q 007424 207 LLG 209 (604)
Q Consensus 207 L~e 209 (604)
|.+
T Consensus 585 Lv~ 587 (970)
T COG5656 585 LVR 587 (970)
T ss_pred HHH
Confidence 866
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.7 Score=51.57 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=133.9
Q ss_pred CChhHHH-HHHHHHHHHHhhcCCCChHHHHHhhh----hc--CCCCCCchhHHHHHHHHHHHhh-------h----cccc
Q 007424 17 SDRDTYS-QAAKELDSIAATVDPTLLPTFLSCIL----ST--NSSDKPGVRKECIHVIATLSNS-------H----NLSP 78 (604)
Q Consensus 17 sDrDT~r-~A~~eLD~lA~~L~pe~ip~fL~~L~----e~--~ss~kp~~RKaaI~lLGvLae~-------h----~i~p 78 (604)
+|-||+| .|...+.-|.++......+.|-..+. ++ +.+-+|..+.-+|-++-.++.- + .+.+
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 6788765 55555677999986544555544442 22 4466788888888777766332 2 2223
Q ss_pred cHHHHHHHHHhhccCC----ChhHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHH---
Q 007424 79 YITKIINSITRNFRDK----NSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATI--- 149 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDp----Ds~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalI--- 149 (604)
-..-....|..-|..| .+.++.++.+=+-.+=.++ ++++. +++-|+..| .-....+-..||.|++++.
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql--~~~~lm~~~p~li~~L-~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL--GKEHLMALLPRLIRFL-EAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccC--ChHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHhccccc
Confidence 2333333444444443 3567766665554444444 34444 555555555 4456789999999998875
Q ss_pred hhc------CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcC-----CcHH
Q 007424 150 DAA------QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSS-----QDWA 217 (604)
Q Consensus 150 E~a------~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~f~pyf~~lm~~L~e~L~s-----~Dw~ 217 (604)
|+. ...+.+++..++..|++.++.+.-.=-..+.-||--++.+.. +..|+++.+++.|.+++.. .+-.
T Consensus 530 e~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~ 609 (960)
T KOG1992|consen 530 ENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQ 609 (960)
T ss_pred cCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCch
Confidence 331 223457888899999999988754323556778877777554 4459999999999999842 2222
Q ss_pred HHHHHHHHHHHHHHHcC
Q 007424 218 ARKAAAEALWRLAVVEK 234 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~g 234 (604)
-=---.|++|.+-+..+
T Consensus 610 fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTC 626 (960)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 23345777777766443
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=93.99 E-value=2 Score=41.60 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh----HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF----VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~----~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
...+++++.-|...|+++++.-|-+.+.-++.+.++..-.-+ ..++.-|+..|-....+.+-..|+.+|..+.+.+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999988888621112 1266666666643345567889999999999886
Q ss_pred CCCC-------hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhh
Q 007424 153 QDPD-------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFL 211 (604)
Q Consensus 153 ~d~i-------~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L 211 (604)
...+ .+.++++.+-++++++. ..+...++.++..+.. -...|.||...+-..+.++|
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 4322 46788899999999975 3456788889998886 44667799888777776655
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=93.84 E-value=6.7 Score=40.02 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=111.3
Q ss_pred hhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhc
Q 007424 13 LNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF 91 (604)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrL 91 (604)
+.|-.|.......++.|-.++.+=. ..+++++..|..-...++...+--+++++..+-..- -.-|+|.+++.....+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence 5555555566666666666666544 447888888766555544444556778888886655 33389998888755442
Q ss_pred c----CCCh--hHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 007424 92 R----DKNS--ALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (604)
Q Consensus 92 k----DpDs--~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L 163 (604)
. +.+. .+.-+++.++..++....+ +. ++++|...|.++.+..++.-|.-+|+.++++.--++.....-|
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl 164 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPD---HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVL 164 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2 2222 2344555566666665432 33 7777777773455666776666677777865322222233334
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHh--cCcCc--C---CchHHHHHHHHhhhcCCc-------HHHHHHHHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIG--SGAVD--G---SGLKGLVSCLLGFLSSQD-------WAARKAAAEA 225 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~--ag~~f--~---pyf~~lm~~L~e~L~s~D-------w~lRkaAaDa 225 (604)
.+++ . ..-++.++..+.++.. ..+.+ . -....++..+-++....+ ..+|.+|.++
T Consensus 165 ~~~l----~---~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 165 QKKL----S---LDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA 233 (234)
T ss_pred HHhc----C---CccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Confidence 4433 2 2234555555555443 11222 2 223345556656655554 3456655554
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.3 Score=50.44 Aligned_cols=202 Identities=16% Similarity=0.103 Sum_probs=130.2
Q ss_pred hHHHHHhhhhcCCC--------CCCchhHHHH-HHHHHHHhhh-ccccc----HHHHHHHHHhhccCCC-h-hHHHHHHH
Q 007424 41 LPTFLSCILSTNSS--------DKPGVRKECI-HVIATLSNSH-NLSPY----ITKIINSITRNFRDKN-S-ALQATCIS 104 (604)
Q Consensus 41 ip~fL~~L~e~~ss--------~kp~~RKaaI-~lLGvLae~h-~i~p~----L~kIl~~IvrrLkDpD-s-~VR~Ac~~ 104 (604)
+|+++..|....+- .+...+|.|| -++|..+-.- .+.++ ...++|-+. .|.+ . .+|+=.++
T Consensus 433 vP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~---~~~~~~RiiRRRVa~ 509 (978)
T KOG1993|consen 433 VPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA---NDHGNSRIIRRRVAW 509 (978)
T ss_pred hHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh---hcccchhHHHHHHHH
Confidence 67888887444222 2345666665 7788775544 33333 222233222 2222 2 35666666
Q ss_pred HHHhhhhhhccch-hHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHHhcCC-chhH
Q 007424 105 TVSSLSPRVGASA-FVTMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAA---QDPDAGKLGRMEVRLERLLKSE-VFKA 178 (604)
Q Consensus 105 aLg~LAe~l~d~~-~~sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a---~d~i~~yL~~L~~RL~klL~s~-~~ka 178 (604)
-+|+-...=.... ...+..-++..| .++ |..|..+++..|..+||-. .+...+|++.+-.-++++|+.- .+..
T Consensus 510 ilg~Wvsvq~~~e~k~l~Y~a~lnLL-~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dt 588 (978)
T KOG1993|consen 510 ILGQWVSVQQKLELKPLLYCAFLNLL-QDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDT 588 (978)
T ss_pred HHhhhhheechHhHHHHHHHHHHHhc-CccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence 6666554211111 111222233333 555 8889999999999999874 4556789988888888888655 6778
Q ss_pred HHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHcC---cchhhhhhHHHH
Q 007424 179 KAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS--SQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLK 246 (604)
Q Consensus 179 K~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~--s~Dw~lRkaAaDaLg~LA~~~g---e~f~py~~~~i~ 246 (604)
|..+++.++.++. ++.-..||...+++.|...|. .++--+|-+-+-+|--+..+.| ..+.|+.=.+|+
T Consensus 589 k~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 589 KTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 9999999999885 776666999888888888874 3566778888888888888887 466666544444
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.43 Score=43.14 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 159 KLGRMEVRLERLLKS----EVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 159 yL~~L~~RL~klL~s----~~~kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
++--++.++-..+.+ .+..-|..++.+|+.++..++.. .++.+++|.+|+..|..+ ++|..|+++...+...+
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHC
Confidence 444466677766666 47778889999999999866554 488888999999988776 89999999999999988
Q ss_pred C-cchhhhhhHHHHHH
Q 007424 234 K-DAVPEFKGKCLKIF 248 (604)
Q Consensus 234 g-e~f~py~~~~i~~L 248 (604)
. +.+.|+.++++-++
T Consensus 86 ~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 86 DEEDLGPLLDQIFAIL 101 (107)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7 78888888877665
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.7 Score=49.66 Aligned_cols=183 Identities=12% Similarity=0.108 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----------------cccccHH
Q 007424 21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----------------NLSPYIT 81 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----------------~i~p~L~ 81 (604)
+-.-|.+.|-.++..+ -|.. |..|+..+........+..|..|++.+|.++..+ ....+++
T Consensus 410 ~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~ 489 (618)
T PF01347_consen 410 TDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP 489 (618)
T ss_dssp -HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence 4455667777777776 4544 5555555532222335678999999999985544 2223555
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC--CChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE--QDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e--qdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
.+...+.......|...+.+++.|||.+...- .++.|...+.++ ....++..|..||.++.+. +
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~-------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-------~ 555 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGHPE-------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-------C 555 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCCch-------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-------C
Confidence 55555555666777788999999999997542 344444444333 3556777888888766442 2
Q ss_pred HHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHH
Q 007424 160 LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEA 225 (604)
Q Consensus 160 L~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDa 225 (604)
-.++-+-|+.++.+. +..+|-|++.+|- .. .|-. ..+..|..+|. +.+-+++....-.
T Consensus 556 ~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm---~~----~P~~-~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 556 PEKVREILLPIFMNTTEDPEVRIAAYLILM---RC----NPSP-SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH---HT-------H-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCChhHHHHHHHHHH---hc----CCCH-HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 235566677777655 5667765544333 21 1222 35555666664 4567776655433
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=93.70 E-value=3.3 Score=47.41 Aligned_cols=188 Identities=18% Similarity=0.134 Sum_probs=100.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHH
Q 007424 26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST 105 (604)
Q Consensus 26 ~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~a 105 (604)
+-.|-.+.+.|+.++|..+...+.... .+...|+--+-+|+.+..... +. +|...|...+-.--. +...
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~a----v~----~i~~~I~~~~~~~~e-a~~~ 417 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPA----VK----FIKDLIKSKKLTDDE-AAQL 417 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHH----HH----HHHHHHHTT-S-HHH-HHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHH----HH----HHHHHHHcCCCCHHH-HHHH
Confidence 666777777777777777777775432 345677777777777755431 11 222222222221111 2234
Q ss_pred HHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcC-C------------C-ChhhHHHHHHHHH
Q 007424 106 VSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQ-D------------P-DAGKLGRMEVRLE 168 (604)
Q Consensus 106 Lg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~-d------------~-i~~yL~~L~~RL~ 168 (604)
+..|...... |-..++.-+++.+. ...++.+...|.+++..++-... . . ...|++.|...+.
T Consensus 418 l~~l~~~~~~-Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 418 LASLPFHVRR-PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK 496 (618)
T ss_dssp HHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred HHHHHhhcCC-CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence 4444444322 22234444444442 13456677888888888876631 1 1 1245566666666
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcC
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~---Dw~lRkaAaDaLg~LA~~~g 234 (604)
...+..+...+-..|-||| .+|- +.+++.|..++.+. .-.+|.+|+.+|..++....
T Consensus 497 ~~~~~~~~~~~~~~LkaLg---N~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALG---NLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHH---HHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHhhccCHHHHHHHHHHhh---ccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 6666767777888888888 3331 24566666666554 57777777777776654433
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.47 E-value=11 Score=45.30 Aligned_cols=252 Identities=14% Similarity=0.188 Sum_probs=150.5
Q ss_pred ChhHHHHHHHHHHHHHhhc--CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC
Q 007424 18 DRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L--~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD 93 (604)
..+..+.+.+.+..++.-| .|-.+++.|+.|-+... ++..-.+++.-+-.+|+.| -+.||+..+++++..-+.-
T Consensus 522 n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~ 599 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNK 599 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcc
Confidence 7789999999999999887 34457777888777654 3345557777889999999 8999999999999888865
Q ss_pred CC--hhHHHHHHHHHHhhhhhhccch-----hHHHHHHHHHHHccC-----CCh------hHHHHHHHHHHHHHhhcCC-
Q 007424 94 KN--SALQATCISTVSSLSPRVGASA-----FVTMLKLLSDALFTE-----QDT------NAQVGAALCLAATIDAAQD- 154 (604)
Q Consensus 94 pD--s~VR~Ac~~aLg~LAe~l~d~~-----~~sllkPL~eaL~~e-----qdk------~vQ~~AA~cLaalIE~a~d- 154 (604)
.. .++|-....++|-+-..+- ++ .+.++.|++..|-.. +++ +.|..+..+|..-..+-.+
T Consensus 600 ~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~ 678 (982)
T KOG2022|consen 600 SNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDI 678 (982)
T ss_pred cccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44 3578888888888777663 11 223777887777311 122 2344455555333322111
Q ss_pred ----------------CChhhHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHhcC-----cCcC-CchHHHHHHHHhhh
Q 007424 155 ----------------PDAGKLGRMEVRLERLLKSEVFKAK-AAGLVVVGSVIGSG-----AVDG-SGLKGLVSCLLGFL 211 (604)
Q Consensus 155 ----------------~i~~yL~~L~~RL~klL~s~~~kaK-~alLsaIGSiA~ag-----~~f~-pyf~~lm~~L~e~L 211 (604)
+++..+.++|+=+-+.++. -++ ...++++.++...| ..|. |+++.+++.+..|+
T Consensus 679 ~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~---~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 679 IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM---WLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred ccccchhhhccccccCCHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 2234456666666666641 122 33555555554433 2342 55556666665555
Q ss_pred cCCcHHHHHHHHHHHHHHHHH----------cCcchhhhhhHHHHHHHhccC-cchhHHHHHHHHHHHHHHhCCCCCCC
Q 007424 212 SSQDWAARKAAAEALWRLAVV----------EKDAVPEFKGKCLKIFESKRF-DKVKVVREVMNKMIEAWKQVPDLSEE 279 (604)
Q Consensus 212 ~s~Dw~lRkaAaDaLg~LA~~----------~ge~f~py~~~~i~~Le~cRf-DKvK~VRda~~~AL~~wK~i~~~~~~ 279 (604)
+...-. +++....++.+ ++..|.......+.++|.-=| +-+-.+-.-+----+.||.+|+..++
T Consensus 756 ~~~~a~----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 756 TSCLAV----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP 830 (982)
T ss_pred cchHHH----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence 443222 22222222221 112445555788888887763 33333444444444789999977544
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.2 Score=50.17 Aligned_cols=232 Identities=17% Similarity=0.108 Sum_probs=137.6
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-----
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG----- 114 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~----- 114 (604)
....+.|+.... ..+++|-+|+..|-.++... ...-|+-++.-.|...+-|+++.+..=++.-|-.+...++
T Consensus 255 ~~~~~~~~~~~~--~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P 332 (728)
T KOG4535|consen 255 GSDAGSAAGSTY--EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKP 332 (728)
T ss_pred hhhHHhhhcCcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCC
Confidence 455666765432 24589999999999999977 8888999999999999999999886555544444444443
Q ss_pred c--------chhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHH-HHHhcCCchhHHHHHH
Q 007424 115 A--------SAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL-ERLLKSEVFKAKAAGL 183 (604)
Q Consensus 115 d--------~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL-~klL~s~~~kaK~alL 183 (604)
+ .+|-. +.+|+-.++.+...+..+.++|.++-.+.-..-+....--+..++-+ ..+=++.+.-+|.+++
T Consensus 333 ~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~ 412 (728)
T KOG4535|consen 333 DSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAAS 412 (728)
T ss_pred CcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHH
Confidence 1 12322 34466565544445567888888886665443222111112233222 2222444445666665
Q ss_pred HHHHHHH-hcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc--C-cchhhhh--------hHHHHHHHh
Q 007424 184 VVVGSVI-GSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE--K-DAVPEFK--------GKCLKIFES 250 (604)
Q Consensus 184 saIGSiA-~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~--g-e~f~py~--------~~~i~~Le~ 250 (604)
.+.+-.+ +-+-.- ..+...+-..+...|.+....+|.-|+-++|-|..++ | .....+. ..-+..-..
T Consensus 413 Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~ 492 (728)
T KOG4535|consen 413 RALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIE 492 (728)
T ss_pred hhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 5554322 112111 1233334444444455567888999999999987744 3 2311132 233344445
Q ss_pred ccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 251 KRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 251 cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
|--||-| ||+-+.+||...-+|-+
T Consensus 493 ~~Ad~dk-V~~navraLgnllQvlq 516 (728)
T KOG4535|consen 493 ASADKDK-VKSNAVRALGNLLQFLQ 516 (728)
T ss_pred hhhhhhh-hhhHHHHHHhhHHHHHH
Confidence 5556654 78888999887777664
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.2 Score=43.07 Aligned_cols=146 Identities=10% Similarity=0.094 Sum_probs=90.1
Q ss_pred HHHHHHHHhhccCCC-hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCCh
Q 007424 81 TKIINSITRNFRDKN-SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPDA 157 (604)
Q Consensus 81 ~kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~--a~d~i~ 157 (604)
|.++..+.+-|+-.. ..+|..+.+++|.|+.-= +-. .+-....+ .+...+.....+-+...-. ......
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD--P~~---~k~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALD--PYK---HKSIQKSL---DSKSSENSNDESTDISLPMMGISPSSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC--cHH---HhcccccC---CccccccccccchhhHHhhccCCCchH
Confidence 677777777777654 689999999999997541 111 11000000 0000111112222222221 111234
Q ss_pred hhHHH-HHHHHHHHhcCCchh-HHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 158 GKLGR-MEVRLERLLKSEVFK-AKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 158 ~yL~~-L~~RL~klL~s~~~k-aK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+|.+. .+..|.+.|+.++.. -+.+++.+|-.|.. .|-...||++.+||.+...+..-+-.+|..-..-|+.|..+++
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk 160 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 56555 677788999888543 33578888888775 4444469999999999999985444999998888888877653
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.4 Score=50.31 Aligned_cols=125 Identities=15% Similarity=0.141 Sum_probs=81.6
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHh
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--------VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~--------~~kaK~alLsaIGSiA~ 191 (604)
.|++-+++++.+ ++......|-.+|+. + +-|+.|+|++...+... ++..=..++..+.|+..
T Consensus 207 lYy~~It~a~~g-~~~~~r~eAL~sL~T-----D----sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 207 LYYKEITEACTG-SDEPLRQEALQSLET-----D----SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhhcc-----C----ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 388888888865 343333334333321 1 34566666666665322 23333445556666665
Q ss_pred cCcCcC-CchHHHHHHHHhhhc----------CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCc
Q 007424 192 SGAVDG-SGLKGLVSCLLGFLS----------SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD 254 (604)
Q Consensus 192 ag~~f~-pyf~~lm~~L~e~L~----------s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfD 254 (604)
=-..|. ||+-.+||.+.-|+. ++.|++|..|+..|..|....++.....+.++++.|..-=.|
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 455665 999999999999984 356999999999999999988866555666666666533333
|
|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.11 Score=39.41 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHH
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTV 106 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aL 106 (604)
-+.|+..|.++|.|+++.||+||++.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 358999999999999999999999764
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.6 Score=50.99 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHH-ccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDAL-FTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL-~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
...+|+|.|.+.++|.+..++..|+..++.+++.+. .++.. .+-|.+..| +.+.+..++..+..|++.+++.++.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~-- 462 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK-- 462 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH--
Confidence 368899999999999999999999999999999974 33333 455555544 3456778999999999999988753
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh--cCc-CcCCchHHHHHHHHhhhcC
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG--SGA-VDGSGLKGLVSCLLGFLSS 213 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~--ag~-~f~pyf~~lm~~L~e~L~s 213 (604)
...-..++.+++..+..+..++-..+.++-.++- -++ .+. ...++|.+......
T Consensus 463 -~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~--~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 463 -AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM--AENVLPLLIPLSVA 519 (700)
T ss_pred -HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee--hhhhhhhhhhhhhc
Confidence 1122233445666666665555554444444332 122 222 23566666554443
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.3 Score=46.78 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhcCC--------------CChHHHHHhhhhcCCCCCCchhHHHHHHHHH
Q 007424 5 LKTSVNGLLNKL-SDRDTYSQAAKELDSIAATVDP--------------TLLPTFLSCILSTNSSDKPGVRKECIHVIAT 69 (604)
Q Consensus 5 Lk~rvl~~L~KL-sDrDT~r~A~~eLD~lA~~L~p--------------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGv 69 (604)
...-++..|+++ ++.||.+..+..++-|...-|. +-+.+|+. ...+++++....+..+|+.
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~----ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK----LLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH----H-S-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence 344567888899 8999999999999888776541 11344444 3445688999999999999
Q ss_pred HHhhh---cc---cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cchh--HHHHHHHHHHH------ccCCC
Q 007424 70 LSNSH---NL---SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAF--VTMLKLLSDAL------FTEQD 134 (604)
Q Consensus 70 Lae~h---~i---~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~~~--~sllkPL~eaL------~~eqd 134 (604)
+.... .- ...|+.++..+...++.++..++..|+.+++.|...=. +..+ ...+++|+..| -+..+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 86655 11 24577777777777766777888999999988864311 0111 22777777766 12234
Q ss_pred hhHHHHHHHHH------HHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 135 TNAQVGAALCL------AATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 135 k~vQ~~AA~cL------aalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
...|-.+..|+ ..+++.+.. .+ +++.|.++++..
T Consensus 212 ~Ql~Y~~ll~lWlLSF~~~~~~~~~~---~~---~i~~L~~i~~~~ 251 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSFEPEIAEELNK---KY---LIPLLADILKDS 251 (312)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHT---TS---HHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHhc---cc---hHHHHHHHHHhc
Confidence 44667888888 334443321 22 666777776544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.30 E-value=16 Score=43.67 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
..++|..-|..+..+|..+. ...+++-++.|+.+.|...=.+|+.+||.-|...+..-..-.+..+..|++.
T Consensus 370 p~~vk~lKleiLs~La~esn-----i~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh 441 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESN-----ISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH 441 (968)
T ss_pred HHHHHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc
Confidence 33444444444444443322 2345666677777777766667777777777755543332233334455544
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.2 Score=47.25 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=120.2
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHH-HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKI-INSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kI-l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~ 119 (604)
||-++.|.. ..+-..+|=+.+-+..-+.++ |.+..+ +.++++-..|+++.+|.-|..++|.+--.- -..
T Consensus 51 F~dvvk~~~----T~dlelKKlvyLYl~nYa~~~---P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---i~e 120 (734)
T KOG1061|consen 51 FPDVVKCMQ----TRDLELKKLVYLYLMNYAKGK---PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---ITE 120 (734)
T ss_pred hHHHHhhcc----cCCchHHHHHHHHHHHhhccC---chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH---HHH
Confidence 455555543 556778888888777777776 444433 568899999999999999999988875432 122
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-CcC-
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDG- 197 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~f~- 197 (604)
-++.||...+ .+.++.++..|+.|.+++-.--.+ ...-.-+++.|-.++.+++..+-+.++.++..|..... ...
T Consensus 121 y~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 121 YLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 3899999999 678899999999999998764221 11123377778888887777777777777777765332 111
Q ss_pred CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcC
Q 007424 198 SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 198 pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
-.-..++..+.+.|. .++|. -+..|..++....
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWG----QIFILDCLAEYVP 231 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCC
Confidence 111234455555554 36888 4778888887665
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.07 E-value=7.4 Score=46.41 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=135.8
Q ss_pred hHHHHHHHHHhhhc-CCh-h--HHHHHHHHHHHHHhhc--CCCChHHHHHhhhh-------cCCCCCCchhHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKL-SDR-D--TYSQAAKELDSIAATV--DPTLLPTFLSCILS-------TNSSDKPGVRKECIHVIAT 69 (604)
Q Consensus 3 ~eLk~rvl~~L~KL-sDr-D--T~r~A~~eLD~lA~~L--~pe~ip~fL~~L~e-------~~ss~kp~~RKaaI~lLGv 69 (604)
.|+|-.+..++.+| .|. | +.-.+++.|..++.+. .+++|-+++..+-. ..+. -..|-..+.+|+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e--~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE--CDTKTSVLNLLST 598 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 46777777766666 565 3 6677888899888864 56666555443322 2222 2467788888888
Q ss_pred HHhhh--cccccHHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHHccCCChhHH--HHH
Q 007424 70 LSNSH--NLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQ--VGA 141 (604)
Q Consensus 70 Lae~h--~i~p~L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~--~~sllkPL~eaL~~eqdk~vQ--~~A 141 (604)
+.+-. .|+||..+|++++-..-+. .++.+|-|.+.+|.+|..-+..++ +..|+-|.++.=.+-+.|.++ ..=
T Consensus 599 lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 599 LIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 86655 8889999998887765544 556799999999999999997754 555888988876443444433 222
Q ss_pred HHHH-HHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcC-CchHHHHHHHHhhhc
Q 007424 142 ALCL-AATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDG-SGLKGLVSCLLGFLS 212 (604)
Q Consensus 142 A~cL-aalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~-pyf~~lm~~L~e~L~ 212 (604)
++.| ..++++. ..+.|-|-.|+|-+.-.++...-.. +.++..|-|-+- -+.+|. -|+..+...+.++|.
T Consensus 679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5556665 3344666678888887776543332 345556665553 345565 777777777777774
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.02 E-value=13 Score=40.62 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHc-C-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 213 SQDWAARKAAAEALWRLAVVE-K-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~-g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
..|-..-.+|+|+||-|+... | +.+.---...-+-+=.+-||.-++-.. .-||..+-.|.+.
T Consensus 315 mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakq--eaaihaLaaIage 378 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQ--EAAIHALAAIAGE 378 (524)
T ss_pred cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchH--HHHHHHHHHhhcc
Confidence 357788899999999999844 4 443311111222233455677776543 2244444445543
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.87 E-value=9.2 Score=46.05 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC----CCCCC-chhHHHHHHHHHHHhhh--cccccHHHHHHHHHh-hc
Q 007424 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTN----SSDKP-GVRKECIHVIATLSNSH--NLSPYITKIINSITR-NF 91 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~----ss~kp-~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Ivr-rL 91 (604)
.+|-+..++-...=++-.+. +..+..-|.+.. .++.. ..=.+|+-.+-.+++-. --.+.+++++..+-+ .+
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 45555555544333333344 444444444442 23333 33455566666666644 667788888776543 34
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccchhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
.-+++.+-..|.+.+|.++.|+.+.|+.. .++-|+.+| +..+-.+| |..-|.+++|.....+.+|...++.-...
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L-h~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL-HNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHh-cCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 45688899999999999999998877554 677777777 32222344 33449999999988888998887777777
Q ss_pred HhcCCchh--HHHHHHHHHHHHHhcC--cCcCCchHHHHHHHHh
Q 007424 170 LLKSEVFK--AKAAGLVVVGSVIGSG--AVDGSGLKGLVSCLLG 209 (604)
Q Consensus 170 lL~s~~~k--aK~alLsaIGSiA~ag--~~f~pyf~~lm~~L~e 209 (604)
.+...+.+ .+..++.+||=+.+.- ++..-|+..++..+.+
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~ 639 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILS 639 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHH
Confidence 77554322 3455777777666521 2223455554444433
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.79 Score=41.77 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~----~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
+++=-++.++...+++.+ +.-|...+.+|+-++..+ +....+.++++.+|+..|..++ +|..|++++..+...
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~ 84 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHh
Confidence 455557778887776664 345788899999999844 4445888899999999997665 999999999999998
Q ss_pred cC-cchhhhhhHHHHHHH
Q 007424 233 EK-DAVPEFKGKCLKIFE 249 (604)
Q Consensus 233 ~g-e~f~py~~~~i~~Le 249 (604)
+. +.+.|..++++-++-
T Consensus 85 L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 85 LKEEELGPLLDQIFAAIL 102 (107)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 87 788888888776654
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=6.3 Score=44.68 Aligned_cols=225 Identities=17% Similarity=0.139 Sum_probs=130.4
Q ss_pred HHHHHHHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhc-CCCCCCchhHHHHHHHHHHHhhh---
Q 007424 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCILST-NSSDKPGVRKECIHVIATLSNSH--- 74 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~-~ss~kp~~RKaaI~lLGvLae~h--- 74 (604)
.|+.-++...+|..|.+ .++.|+.-|-.+|.-.|.+. .+.++..|.-. ....+..+-=+++.+|..+.+-.
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 46666777788888887 56677777777777655333 23333333111 12223577888888888886665
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch---hHH----HHHHHHHHHccCCChhHH-HHHHHHHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVT----MLKLLSDALFTEQDTNAQ-VGAALCLA 146 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~---~~s----llkPL~eaL~~eqdk~vQ-~~AA~cLa 146 (604)
.+.+|+-.|-=.+...+.|-++.+|-|+-..+|+|+.....+- |.. -+.||+..| +|++.+ ..||....
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl---~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL---QDPNPYVARACRSEL 411 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee---CCCChHHHHHHHHHH
Confidence 7778888887777888888889999999999999999987532 222 244666666 455444 34455444
Q ss_pred HHH-hhcC-CCChhhHH----HHHHHHHHHhcC-------Cch-------------------hHHHHHHHHHHHHH-hcC
Q 007424 147 ATI-DAAQ-DPDAGKLG----RMEVRLERLLKS-------EVF-------------------KAKAAGLVVVGSVI-GSG 193 (604)
Q Consensus 147 alI-E~a~-d~i~~yL~----~L~~RL~klL~s-------~~~-------------------kaK~alLsaIGSiA-~ag 193 (604)
.++ +++. +....|++ ..++++.+..++ -++ .++.++...-+... +..
T Consensus 412 ~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 412 RTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred HhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 432 3321 11112333 234333333322 111 22333222222111 111
Q ss_pred cCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 194 AVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 194 ~~f~--pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.+.- -....+...|+.++.+.--++++.|..+++.+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 1111 1224566777778888888899999999887653
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=91.74 E-value=19 Score=41.06 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHH
Q 007424 24 QAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCI 103 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~ 103 (604)
..+-.|-.+.+.++.++|..+...+.. .. ...|+--+-+|+.+.... -+. +|.+.++..+-.-. -+.
T Consensus 311 ~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~----a~~----~i~~~i~~~~~~~~-ea~ 377 (574)
T smart00638 311 AKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPP----ALK----FIKQWIKNKKITPL-EAA 377 (574)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHH----HHH----HHHHHHHcCCCCHH-HHH
Confidence 344456666777788888887777754 21 456666667766665433 222 22223333322111 122
Q ss_pred HHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcC--CC------ChhhHHHHHHHHHHHhc
Q 007424 104 STVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQ--DP------DAGKLGRMEVRLERLLK 172 (604)
Q Consensus 104 ~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~--d~------i~~yL~~L~~RL~klL~ 172 (604)
..+..+...+.. |-..++.-+++.+.. ...+.+..+|.++++.++.... .. ..+|++.|...|.++.+
T Consensus 378 ~~~~~~~~~~~~-Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~ 456 (574)
T smart00638 378 QLLAVLPHTARY-PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS 456 (574)
T ss_pred HHHHHHHHhhhc-CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh
Confidence 233333333321 222355555555532 2355677888888888887431 11 12456666666666665
Q ss_pred CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-C--CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 173 SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-S--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 173 s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
..+..-+...|-+|| .+|- +..++.|..++. + -.-.+|.+|+.+|..+|....+.+.+. .+.++.
T Consensus 457 ~~~~~~~~~~LkaLG---N~g~------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~---l~~i~~ 524 (574)
T smart00638 457 KGDEEEIQLYLKALG---NAGH------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV---LLPIYL 524 (574)
T ss_pred cCCchheeeHHHhhh---ccCC------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH---HHHHHc
Confidence 556555666777777 4442 244555666664 2 356799999999999987666555543 456665
Q ss_pred hccCcchhHHHHHHHHHH
Q 007424 250 SKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 250 ~cRfDKvK~VRda~~~AL 267 (604)
+-. .-..||=+|.-+|
T Consensus 525 n~~--e~~EvRiaA~~~l 540 (574)
T smart00638 525 NRA--EPPEVRMAAVLVL 540 (574)
T ss_pred CCC--CChHHHHHHHHHH
Confidence 443 3456787766554
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.6 Score=53.86 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhhhhhccc---hhHHHHHHHHHHHccCCChh----HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 99 QATCISTVSSLSPRVGAS---AFVTMLKLLSDALFTEQDTN----AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~---~~~sllkPL~eaL~~eqdk~----vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
|.-|--+|-.|+.+.... ....+..=|+++|.++-+-+ --......++... ++...+ +..+.|+|+.++
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m---~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLM---HSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhh---hhhhhh-hhhhhhHHHHhc
Confidence 777888888888887421 01112222333332211111 0111222222222 222223 667889999999
Q ss_pred cCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH-HHHHcCcchhhhhhHHHHHHH
Q 007424 172 KSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR-LAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 172 ~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~-LA~~~ge~f~py~~~~i~~Le 249 (604)
.+.+..+|.++..|||-.+.++ .+.. ..++..+...+.+.+--.|+++++.+.. +.....-.+-||..-.+..|=
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m---~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETM---ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 9999999999999999887643 3322 2233333444444454555555555544 444445677778777777777
Q ss_pred hccCcchhHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 007424 250 SKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPP 283 (604)
Q Consensus 250 ~cRfDKvK~VRda~~~AL~~wK~i~~~~~~~~~p 283 (604)
.|=.|-+-.||+++.++.-...-+.+...+.++|
T Consensus 903 r~msd~~d~vR~aat~~fa~lip~~~le~g~~~p 936 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDP 936 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHhcccccccCCCCC
Confidence 7888999999999999999998877775555544
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.2 Score=52.17 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhhhhhc-cchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh
Q 007424 99 QATCISTVSSLSPRVG-ASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~-d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k 177 (604)
++++.+.+-.++.+-. -+.|..||+-++..| +++...+...|--||..++|.- +.+=..+.+-..+-.-|...+..
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l-~e~~ialRtkAlKclS~ive~D--p~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVL-GENAIALRTKALKCLSMIVEAD--PSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhcC--hHhhcCHHHHHHHHHhhccchhH
Confidence 4555554444444321 034555888888888 7888889999999999999953 22223355555666777788899
Q ss_pred HHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc--chhhhhhHHHHHHHhccCc
Q 007424 178 AKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--AVPEFKGKCLKIFESKRFD 254 (604)
Q Consensus 178 aK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge--~f~py~~~~i~~Le~cRfD 254 (604)
+|.|++.+||-.+.+-.+. ..|++ +|.+-+.++.-.+||-|+-.|-.|....++ .+.......|.-.+ |
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~----D 942 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVN----D 942 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc----c
Confidence 9999999999766543332 24554 455555668899999999999999987763 44444444444444 6
Q ss_pred chhHHHHHHHHHHH-HH
Q 007424 255 KVKVVREVMNKMIE-AW 270 (604)
Q Consensus 255 KvK~VRda~~~AL~-~w 270 (604)
---.|-+-|.+.+. +|
T Consensus 943 EEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 943 EEGNIKKLVRETFLKLW 959 (1692)
T ss_pred chhHHHHHHHHHHHHHh
Confidence 66667777777654 45
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.4 Score=52.05 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=85.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
|..+|.+-|+-++..|--.|+-|+|+|+.. ++.--|-|.++-|+..+++.+...|++|+.++|.-.++ .+.-
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~----l~e~ 179 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD----LVEH 179 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch----HHHH
Confidence 556888999999999999999999999753 22236778888887889999999999999999997764 3444
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007424 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (604)
Q Consensus 163 L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L 211 (604)
+.+...++|...+.-+=.+.+..+..+...+.+...||..+++.+...|
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 5666777776665444344444444444444444456666666665555
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.45 E-value=5.4 Score=47.16 Aligned_cols=92 Identities=17% Similarity=0.073 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhh
Q 007424 161 GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE 239 (604)
Q Consensus 161 ~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~p 239 (604)
+..||+++.+|... ++++|-.+.-|+| |+.+|.. ....+..|.+...+..--+|..|+-+++-|..-.-+..-|
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALG-IaCAGtG----~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALG-IACAGTG----LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHh-hhhcCCC----cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 77999999999766 8899988888888 5566643 2456666666666778889999999999998866554444
Q ss_pred hhhHHHHHHHhccCcchh
Q 007424 240 FKGKCLKIFESKRFDKVK 257 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK 257 (604)
--..+.+.|+.-=-||-.
T Consensus 662 kv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hHHHHHHHHHHHhhhhhh
Confidence 434445555443336543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.33 E-value=16 Score=43.29 Aligned_cols=118 Identities=10% Similarity=0.140 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh---------cCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAAT---------VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLS 71 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~---------L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLa 71 (604)
+.|..+++.-|+.|=.. -.|+..|-..+.+ +|.+. +..-++-|.....++++..|-=++++|+-++
T Consensus 251 PRLgKKLieplt~li~s---T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMES---TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred chhhhhhhhHHHHHHHh---hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 34556666666665332 2344445443333 22222 4444455566677888899999999999999
Q ss_pred hhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc
Q 007424 72 NSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (604)
Q Consensus 72 e~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~ 130 (604)
-.| ++.-|.+ .|++-|.|-|.++|-=|++=|-.|... .....+++-|+..+.
T Consensus 328 ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVsk---kNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 328 KTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVSK---KNLMEIVKTLMKHVE 381 (877)
T ss_pred hhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Confidence 999 8888877 677889999999998887776666544 445558888888874
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.22 E-value=13 Score=39.50 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=83.3
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHH-HHHHHHHHHc---cCCChhHH---HHHHHHHH
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVT-MLKLLSDALF---TEQDTNAQ---VGAALCLA 146 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~s-llkPL~eaL~---~eqdk~vQ---~~AA~cLa 146 (604)
..--++++..+.++|+|..+.||.+-...+|.+...... ..+.. |+++|++.+- ...-+.+| ..+|+|+.
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 455688899999999999999999999999998751100 12222 6777776662 12223333 34455554
Q ss_pred HHHhhcCCC--------------ChhhHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-cCcCcCCc-hHHHHHHHHh
Q 007424 147 ATIDAAQDP--------------DAGKLGRMEVRLERLLKS-EVFKAKAAGLVVVGSVIG-SGAVDGSG-LKGLVSCLLG 209 (604)
Q Consensus 147 alIE~a~d~--------------i~~yL~~L~~RL~klL~s-~~~kaK~alLsaIGSiA~-ag~~f~py-f~~lm~~L~e 209 (604)
.+.....+. ..+- --+-+|++..|.+ +... -++.++-+++. ......+. ....-..+.-
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~kps-~ll~~kvyskl~~~~d~~---w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ 211 (339)
T PF12074_consen 136 ALSSWKLDKIDSKNISFWSLALDPKPS-FLLSEKVYSKLASEEDLC---WLLRALEALLSDHPSELSSDKSSAWAQAFIY 211 (339)
T ss_pred HhccccchhhhhhhhhhhhhccCCCcc-hhcCHHHHhccCCHhHHH---HHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 411100000 0000 0123355544322 2322 23333333331 11111111 1233455555
Q ss_pred hhcCC--cHHHHHHHHHHHHHHHHHcCcc
Q 007424 210 FLSSQ--DWAARKAAAEALWRLAVVEKDA 236 (604)
Q Consensus 210 ~L~s~--Dw~lRkaAaDaLg~LA~~~ge~ 236 (604)
++.+. .|.+|+.|.++|..+....+..
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 56666 8999999999999987765543
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=91.07 E-value=9.8 Score=43.98 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD 93 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD 93 (604)
++.-+-++|++-|-.+..+.|.=+ |..+|.++. .++..+|+.||+.|-.+|... ..|++||.-++++.|+-
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE----Ded~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE----DEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQT 107 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-----SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhc
Confidence 677789999999999999887433 666666655 456789999999999998865 45899999999999999
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~ 130 (604)
.|+..+.++-.+|-.|-..=.+ ..|..||..+.
T Consensus 108 dd~~E~~~v~~sL~~ll~~d~k----~tL~~lf~~i~ 140 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLLKQDPK----GTLTGLFSQIE 140 (556)
T ss_dssp --HHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHH
Confidence 9999999999998777555321 25666666664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=91.01 E-value=20 Score=46.89 Aligned_cols=124 Identities=10% Similarity=0.152 Sum_probs=86.4
Q ss_pred HHHHHHh---hcCCCChHHHHHhhhhcCCCC---CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHh----hccCCC
Q 007424 28 ELDSIAA---TVDPTLLPTFLSCILSTNSSD---KPGVRKECIHVIATLSNSH--NLSPYITKIINSITR----NFRDKN 95 (604)
Q Consensus 28 eLD~lA~---~L~pe~ip~fL~~L~e~~ss~---kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Ivr----rLkDpD 95 (604)
.+|.+-. .|+.+.|..|+.+|.+-.... ...-|-.++..|..++..- -+.-.+.+||.++.. --..++
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence 4455433 578888999999987542111 1245888888887776655 333356676665543 334556
Q ss_pred hhHHHHHHHHHHhhhhhhccch------hH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 96 SALQATCISTVSSLSPRVGASA------FV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~------~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
..|+--|++.|.+++-...+.. |. .||+|+...|-...+..++....-|+..+|++
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 7799999999999998876532 22 39999998886556777888999999888876
|
|
| >KOG1837 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=10 Score=48.17 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-----CCCchhHHHHHHHHH---HHhhh--cccccHHHHHHHHHhh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-----DKPGVRKECIHVIAT---LSNSH--NLSPYITKIINSITRN 90 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss-----~kp~~RKaaI~lLGv---Lae~h--~i~p~L~kIl~~Ivrr 90 (604)
..++...-.-.++..|.-..|.|++.-+.+-..+ .....+.-.|..|+. +++.+ .+.||...++-..+-.
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5667777777888888877774444444332221 111223333444443 37777 7788877777655544
Q ss_pred ccCCCh------------hHHHHHHHHHHhhhhhhcc--------------chhHHHHHHHHHHHcc---C--CChhHHH
Q 007424 91 FRDKNS------------ALQATCISTVSSLSPRVGA--------------SAFVTMLKLLSDALFT---E--QDTNAQV 139 (604)
Q Consensus 91 LkDpDs------------~VR~Ac~~aLg~LAe~l~d--------------~~~~sllkPL~eaL~~---e--qdk~vQ~ 139 (604)
|+--+. ..| -+..+|+|+-.+.. ..+..+..|+...|.. + ....+-.
T Consensus 1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence 443332 234 33344444433321 2233467788777753 1 1122333
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHH
Q 007424 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf~~lm~~L~e~L~s~Dw~l 218 (604)
..+.|++.+--..++. +++|..++++...+.+.++|-.+|-.+--++.--+++ .+.+++++|.|.+.+.++|-++
T Consensus 1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 4444444433333332 7888888888888888899988888888777644444 4888999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcchhhh
Q 007424 219 RKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ge~f~py 240 (604)
--.+.+.+..+=...||.|..|
T Consensus 1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHhchhhhhc
Confidence 8888888888888999987766
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.56 E-value=5.8 Score=47.57 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=88.6
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHH-HHh-------hcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--c
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDS-IAA-------TVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N 75 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~-lA~-------~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~ 75 (604)
+++|+-|.-=+|.-.+--|+.||=. |.. .+|-++ +|.++..|... .++..--.|.++|..||+.+ .
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccch
Confidence 3455555554555555556666532 221 246666 46666666432 23566778889999999888 1
Q ss_pred ccccHH-HHHHHHHhhccCCC----------------------------------------hhHHHHHHHHHHhhhhhhc
Q 007424 76 LSPYIT-KIINSITRNFRDKN----------------------------------------SALQATCISTVSSLSPRVG 114 (604)
Q Consensus 76 i~p~L~-kIl~~IvrrLkDpD----------------------------------------s~VR~Ac~~aLg~LAe~l~ 114 (604)
++--+. --||+++.+|.--. ..++++|.-+++.++..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111111 13445555544332 1233333333333333332
Q ss_pred cchhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC--hhhH--HHHHHHHHHHhc
Q 007424 115 ASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD--AGKL--GRMEVRLERLLK 172 (604)
Q Consensus 115 d~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i--~~yL--~~L~~RL~klL~ 172 (604)
-..|+ .=..||+..|+..+++..-..+|.|+.+++|++...+ .+.| +.|+.+...||.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 11222 2345677777778898999999999999999964322 1211 235556666654
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=3.3 Score=44.45 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=103.6
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
..-+....+.|.+.|..+---.+..+.+|+++=.+ .-++.++.-+...+ ......|..+||+|++.+.++.++-+.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666655555556666666666322 11222333333333 233446888999999999999876554
Q ss_pred hhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 158 GKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 158 ~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
..+..++-.|+.-= .++.| ++..+.-|+-+... +-. ..+++.|+.++....-.+|.-++-+....---.|
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrF-vreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRF-VREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 43333222222111 12223 34444445554442 322 2467777777776666666666655544333232
Q ss_pred -cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 235 -DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 235 -e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
....+|...-+..+-+-=-||...+|++++-++.-.|.+-
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence 3333454455677777777999999988888777766654
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=90.41 E-value=4.3 Score=43.91 Aligned_cols=131 Identities=20% Similarity=0.281 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCC-C--CCchhHHHHHHH-HHHHhhh-cccccHHHHHHHHHhhc
Q 007424 18 DRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSS-D--KPGVRKECIHVI-ATLSNSH-NLSPYITKIINSITRNF 91 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss-~--kp~~RKaaI~lL-GvLae~h-~i~p~L~kIl~~IvrrL 91 (604)
+.++.+.++ |+.|..+-.=.+ +|.|+..|.+.... . +...=...++.+ +.+..-+ ++.|||-.|||.|+.-|
T Consensus 190 ~~~~~r~~a--L~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltcl 267 (343)
T cd08050 190 SNEEKRREA--LQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCL 267 (343)
T ss_pred CCHHHHHHH--HHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHh
Confidence 455555544 667766544445 68888888766332 1 122212222222 2223333 88899888888777444
Q ss_pred ----------cCCChhHHHHHHHHHHhhhhhhccc--hhHH-HHHHHHHHHccCCChh-HHHHHHHHHHHHHh
Q 007424 92 ----------RDKNSALQATCISTVSSLSPRVGAS--AFVT-MLKLLSDALFTEQDTN-AQVGAALCLAATID 150 (604)
Q Consensus 92 ----------kDpDs~VR~Ac~~aLg~LAe~l~d~--~~~s-llkPL~eaL~~eqdk~-vQ~~AA~cLaalIE 150 (604)
-|....+|+-++..|+.++...... .... +..-|..+|++...+. ..-||..+|.++..
T Consensus 268 v~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 268 VAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred hhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 2233479999999999999998652 2222 6777888887554444 47888888888753
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=90.25 E-value=16 Score=40.43 Aligned_cols=203 Identities=10% Similarity=0.104 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh-HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc--
Q 007424 58 GVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA-LQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-- 131 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~-VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~-- 131 (604)
..=-+.+..||-+..|. .-..|..-+..+|+-..+-+... ..+.-...+.++.+.= ..+..+++..|+.
T Consensus 190 ~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-----p~l~~~~i~~llk~W 264 (409)
T PF01603_consen 190 NGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-----PSLAEPVIKGLLKHW 264 (409)
T ss_dssp STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH------GGGHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHhC
Confidence 44445556666665554 22223344444445555544433 2455555555554431 2366666777653
Q ss_pred -CCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHh
Q 007424 132 -EQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLG 209 (604)
Q Consensus 132 -eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e 209 (604)
..+..-|..--.=+..+++..++. ...+...|+.++.++++++++++-..++.....-.-. ..+..+-..++|.|.+
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLISQNSRVILPIIFP 343 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHHCTHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHHhChHHHHHHHHH
Confidence 334445555555556666665432 2467788999999999999999855544422211000 0112344567777777
Q ss_pred hhcC---C--cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 210 FLSS---Q--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 210 ~L~s---~--Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
.|.. . +-.+|..|..+|..+...-++.|.. |.+.+. ++.+.-.+...+-.+.|++|.
T Consensus 344 ~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~----~~~~~~----~~~~~~~~~~~~r~~~W~~i~ 405 (409)
T PF01603_consen 344 ALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK----CAQKYK----EKEQKEKAREKKRKKKWKKIE 405 (409)
T ss_dssp HHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH----HHHHHH----HHHHHHHHSSHHHHHHHTT-S
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 7642 3 3458999999999999877777664 344443 233333334456677898876
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.19 E-value=3.8 Score=48.39 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=114.3
Q ss_pred CCCCCCchhHHHHHHHHHH--HhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 52 NSSDKPGVRKECIHVIATL--SNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvL--ae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
..+.+|-.|..++..++.. +.+. ..-+.++|++ .++|++--||+||+.|+|-+.-.- | ..|+-..+.|
T Consensus 528 ~~dkdpilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d---p--~~~~s~V~lL 597 (929)
T KOG2062|consen 528 LRDKDPILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD---P--EQLPSTVSLL 597 (929)
T ss_pred hcCCchhhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC---h--hhchHHHHHH
Confidence 3455789999999766654 3333 1122333333 267899999999999999875442 2 2333344444
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHH
Q 007424 130 FTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLL 208 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~ 208 (604)
...-|++|..|||+||.-.|-+.+... . -.|++.| .+.+ +|--+.|+|+.---++|--...-|-...+...+.
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~~e--A-i~lLepl---~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~ 671 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGLKE--A-INLLEPL---TSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLE 671 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCcHH--H-HHHHhhh---hcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 333499999999999999888766421 1 1122222 2344 5554555554333334554444466666666666
Q ss_pred hhhcC--CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 209 GFLSS--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 209 e~L~s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..+.+ +|-.+.--|+-+=|- ..+.|..+. |.+...-..+|++.|=..+ -=+|.|==
T Consensus 672 kvI~dKhEd~~aK~GAilAqGi-ldaGGrNvt------islqs~tg~~~~~~vvGl~-~Flq~WyW 729 (929)
T KOG2062|consen 672 KVINDKHEDGMAKFGAILAQGI-LDAGGRNVT------ISLQSMTGHTKLDAVVGLV-VFLQYWYW 729 (929)
T ss_pred HHhhhhhhHHHHHHHHHHHhhh-hhcCCceEE------EEEeccCCCCchHHHHHHH-HHHHHHHH
Confidence 66653 555555555544332 234454443 3444667778888887764 45677643
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=90.17 E-value=5 Score=42.04 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=96.0
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch---hHH--HHHHHHHHHc---c--------CCChhHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVT--MLKLLSDALF---T--------EQDTNAQ 138 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~---~~s--llkPL~eaL~---~--------eqdk~vQ 138 (604)
.+..|++-++|.|...+-|.++.++--.+..|..|...+.... +.. +...+.++|+ - ++...+-
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 8889999999999999999999999999999999998774322 111 2333333332 1 3344566
Q ss_pred HHHHHHHHHHHhhcCCC-C---hhhHHHHHHH-HHHHhcCC----chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHH
Q 007424 139 VGAALCLAATIDAAQDP-D---AGKLGRMEVR-LERLLKSE----VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLL 208 (604)
Q Consensus 139 ~~AA~cLaalIE~a~d~-i---~~yL~~L~~R-L~klL~s~----~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~ 208 (604)
..|.-||-.++...... . ...+.+++-. ++.-+.+. ...+..+++..+..++. .|-...-|+..+++.|.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77788887776653211 1 1233443333 55555444 35677888888888886 55555589999999999
Q ss_pred hhhcCCc
Q 007424 209 GFLSSQD 215 (604)
Q Consensus 209 e~L~s~D 215 (604)
+++.+.+
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 9887754
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.01 E-value=11 Score=45.11 Aligned_cols=229 Identities=19% Similarity=0.242 Sum_probs=141.0
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCCh
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNS 96 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs 96 (604)
+.+..+.+-++.+-.|+.. .|.-|-+++.-+.= .+++...++.-=|..|..|+... .+..|+.-+.--++++|-
T Consensus 333 s~~~vqyvvL~nIa~~s~~-~~~lF~P~lKsFfv-~ssDp~~vk~lKleiLs~La~es----ni~~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 333 SNREVQYVVLQNIATISIK-RPTLFEPHLKSFFV-RSSDPTQVKILKLEILSNLANES----NISEILRELQTYIKSSDR 406 (968)
T ss_pred cCCcchhhhHHHHHHHHhc-chhhhhhhhhceEe-ecCCHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHHhcCch
Confidence 4555666655555555542 23334444433321 22222244555555566666544 445566666666788887
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC-c
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-V 175 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~-~ 175 (604)
.|-.+++.|+|+.|..+..-+ ..-+.=|+..| ...+..|-..|+..+..+++.-+. .-.+++-+|+++|.+- .
T Consensus 407 ~faa~aV~AiGrCA~~~~sv~-~tCL~gLv~Ll-sshde~Vv~eaV~vIk~Llq~~p~----~h~~ii~~La~lldti~v 480 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGSVT-DTCLNGLVQLL-SSHDELVVAEAVVVIKRLLQKDPA----EHLEILFQLARLLDTILV 480 (968)
T ss_pred hHHHHHHHHHHHHHHhhCchh-hHHHHHHHHHH-hcccchhHHHHHHHHHHHHhhChH----HHHHHHHHHHHHhhhhhh
Confidence 888999999999988874321 12556666666 334667888889999999997543 2245677788888543 4
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcc
Q 007424 176 FKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 176 ~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDK 255 (604)
..||+.+|=.||-.+.. . .-..+.++..+..-++++.-.+|-+.+....+|-..-.+- .+--+..+|+-.|||-
T Consensus 481 p~ARA~IiWLige~~e~--v-pri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~---~kll~~Yv~~L~~yD~ 554 (968)
T KOG1060|consen 481 PAARAGIIWLIGEYCEI--V-PRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ---TKLLVQYVFELARYDL 554 (968)
T ss_pred hhhhceeeeeehhhhhh--c-chhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh---HHHHHHHHHHHhccCC
Confidence 44666655566633321 1 1223466777777778888888877766665554422222 4455677999999999
Q ss_pred hhHHHHHH
Q 007424 256 VKVVREVM 263 (604)
Q Consensus 256 vK~VRda~ 263 (604)
-=.|||-+
T Consensus 555 sYDiRDRa 562 (968)
T KOG1060|consen 555 SYDIRDRA 562 (968)
T ss_pred CcchhHHH
Confidence 99999975
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.94 E-value=20 Score=39.24 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=108.7
Q ss_pred HHHHHhhcCCCChHHHHHhhhh---cCCCCCCchhHH---HHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHH
Q 007424 29 LDSIAATVDPTLLPTFLSCILS---TNSSDKPGVRKE---CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATC 102 (604)
Q Consensus 29 LD~lA~~L~pe~ip~fL~~L~e---~~ss~kp~~RKa---aI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac 102 (604)
+-+.-+-||--.+|.+...|.- -..=.+-.+|+. |+.+|..|-..-.=+-..|.++|.+.++|.-+|.+|.--+
T Consensus 23 ehSVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLa 102 (524)
T KOG4413|consen 23 EHSVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILA 102 (524)
T ss_pred HhHHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhh
Confidence 3334444454446666555531 112223457777 6666666633222233467788999999999999999999
Q ss_pred HHHHHhhhhhhcc--ch---h--H-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCC--hhhHHHHHHHHHHH
Q 007424 103 ISTVSSLSPRVGA--SA---F--V-TMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPD--AGKLGRMEVRLERL 170 (604)
Q Consensus 103 ~~aLg~LAe~l~d--~~---~--~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~--a~d~i--~~yL~~L~~RL~kl 170 (604)
|..+|++-+.+.- .. . . .+++.+++.+.++.+ .|..+|.-.+.++--. +-+.+ -+.+..+--|=+.+
T Consensus 103 ckqigcilEdcDtnaVseillvvNaeilklildcIggedd-eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa 181 (524)
T KOG4413|consen 103 CKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD-EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA 181 (524)
T ss_pred HhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh
Confidence 9999999998752 11 1 1 178899999965544 4555554444322111 00000 00111111110000
Q ss_pred hcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH-cC-cchh
Q 007424 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSS-QDWAARKAAAEALWRLAVV-EK-DAVP 238 (604)
Q Consensus 171 L~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s-~Dw~lRkaAaDaLg~LA~~-~g-e~f~ 238 (604)
-. +.-++--+++.|--+..+......|. ..++..|..-|+. +|--+|...++....+|.. +| +++.
T Consensus 182 kc--ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla 252 (524)
T KOG4413|consen 182 KC--NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA 252 (524)
T ss_pred hh--hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence 00 11233334444444443332221122 1245555544543 7888888888888888873 35 4433
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.8 Score=53.35 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHH----hhh-cccccHHHHHHHHHhhcc
Q 007424 21 TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLS----NSH-NLSPYITKIINSITRNFR 92 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLa----e~h-~i~p~L~kIl~~IvrrLk 92 (604)
+++-|-..|..|++.+-++- +|.|-+||.+..+..-+.- -.-+.-|++.= ..+ .+.| +-..+|.+..-++
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 45667777788888775433 5666555543322211110 14555555541 222 4444 5556667777888
Q ss_pred CCChhHHHHHHHHHHhhhhhhccchhH---HHHHHHHHHHccCCChhHHHHHHHH-HHHHHhhcCCCChhhHHHHHHHHH
Q 007424 93 DKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALC-LAATIDAAQDPDAGKLGRMEVRLE 168 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d~~~~---sllkPL~eaL~~eqdk~vQ~~AA~c-LaalIE~a~d~i~~yL~~L~~RL~ 168 (604)
-+.+.||-||+.++|.++.-....... .-+.|+++++ +.-+...++.| +.-+.+.+.-.+.+|.+-|.+-|+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~----~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL----DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch----hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 999999999999999998877542222 2456666665 43444444444 455556566677899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHh
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~ 191 (604)
..+....--++.++-.+...++-
T Consensus 903 r~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHhc
Confidence 99988877788888888888884
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=89.70 E-value=7.1 Score=46.35 Aligned_cols=178 Identities=17% Similarity=0.169 Sum_probs=98.3
Q ss_pred ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH--HHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cc
Q 007424 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK--IINSITRNFRDKNSALQATCISTVSSLSPRVG-AS 116 (604)
Q Consensus 40 ~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k--Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~ 116 (604)
.++.++..+. +.+...+..++++|..|+-...+.++|-+ ++|.++..|.|++ .|..|...|-.|+..=. +.
T Consensus 332 iV~kL~kLl~----s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 332 IVEKLLKLLP----SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS 405 (708)
T ss_pred CHHHHHHHhc----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH
Confidence 3777666664 34557899999999999776644555555 6677777787764 66778888887776321 01
Q ss_pred hhH--HHHHHHHHHHccCCChhHHHH-HHHHH--HHHHhhcCCCC-hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 117 AFV--TMLKLLSDALFTEQDTNAQVG-AALCL--AATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 117 ~~~--sllkPL~eaL~~eqdk~vQ~~-AA~cL--aalIE~a~d~i-~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
-|. .-++.|+..|+...+..++.. .|+|+ +.--.++.-.. ...|+.|+.|.++ ..+ +.++-+|.-++
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~---~~D----~lLlKlIRNiS 478 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK---TRD----PLLLKLIRNIS 478 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh---ccc----HHHHHHHHHHH
Confidence 111 156777777765444444432 22222 11111110000 1346666666543 221 45666888888
Q ss_pred hcCcCcCCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHHHc
Q 007424 191 GSGAVDGSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 191 ~ag~~f~pyf~~lm~~L~e~L~s~-Dw~lRkaAaDaLg~LA~~~ 233 (604)
+-.+....-|...|.-|...+... ++ ...+|+||.|+-..
T Consensus 479 ~h~~~~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 479 QHDGPLKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLT 519 (708)
T ss_pred hcCchHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcc
Confidence 644322122223333333444433 33 35899999999843
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.52 Score=34.75 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=26.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
.+|.+++.|++++..|+..|++||+.|+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999874
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=89.65 E-value=3.1 Score=36.85 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhc-cch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~-d~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
..+..+..-|.||.+-||.-++..|..|.+.-. ... ...++.-++. .+.++|+.+.-.|.-||+++++..++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHChH
Confidence 345677888999999999999999999988764 211 1124444444 44789999999999999999997654
|
|
| >PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.5 Score=37.41 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhhcc-CCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhH-HHHHHHHHHHHHhhc
Q 007424 78 PYITKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNA-QVGAALCLAATIDAA 152 (604)
Q Consensus 78 p~L~kIl~~IvrrLk-DpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~v-Q~~AA~cLaalIE~a 152 (604)
.+++.|+|++.++|+ -..+-.|-||.-.++.|+... +.. .++..|++++........ +..+-.||..+.+.=
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 378999999999999 677789999999999999986 333 388888888875443333 377888998888763
|
The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.3 Score=48.91 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCh---HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLL---PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~i---p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
-..++...|.+|....|.++. ..+.+-|.+ .-.-..+|+.+-++.-+.+- +-..=++++..+|.-+.|.+
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDce-- 463 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCE-- 463 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcc--
Confidence 456777888888888887772 222233333 22335677777766655442 22234566677777775544
Q ss_pred HHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLER 169 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~~L~~RL~k 169 (604)
..+.+++-||.|.+...+.+... |+.-+..-++=| +-.+..+|..||.++.=+..+... +-+..++-|.+.
T Consensus 464 y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln 536 (898)
T COG5240 464 YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN 536 (898)
T ss_pred hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh
Confidence 56667777777777777655444 555555555323 335777777777777777666554 345555655553
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.14 E-value=55 Score=39.08 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=106.1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
.+..++-+|+|+...+|-.||--||--++.+.....+.+. .++.-|.+.|+ -+..|+|.+-|..||.++=+.-.++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 5778889999999999999999999999999886543221 24444444443 2678899999999999998644443
Q ss_pred ChhhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhcCcCcCCch----------------H--------------HHH
Q 007424 156 DAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGSGL----------------K--------------GLV 204 (604)
Q Consensus 156 i~~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~ag~~f~pyf----------------~--------------~lm 204 (604)
-.+..+ -+.-++ +.|+..++.++++.|.- ..-..||. + .-+
T Consensus 161 e~~v~n----~l~~liqnDpS~EVRRaaLsnI~v----dnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv 232 (892)
T KOG2025|consen 161 ECPVVN----LLKDLIQNDPSDEVRRAALSNISV----DNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRV 232 (892)
T ss_pred cccHHH----HHHHHHhcCCcHHHHHHHHHhhcc----CcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 333222 222333 45588899888876641 00001111 1 122
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 205 SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 205 ~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
..|..-|.+-+..+|+++.++|.. +.+.--...+++.|+..-----..|+-.+.+||=.
T Consensus 233 ~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 233 LLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 333444456678888888888765 22222223455555533333333466666666543
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.00 E-value=2.5 Score=48.58 Aligned_cols=121 Identities=11% Similarity=0.188 Sum_probs=83.0
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC-CChhHHHHHHHHHHhhhhhhccchhH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASAFV 119 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD-pDs~VR~Ac~~aLg~LAe~l~d~~~~ 119 (604)
+..+|+. +.+..+-.+||+|+-+||.+|=-- +..++-++..|.| .+..||-+.+.|||..+.-..+
T Consensus 553 v~~lLh~---avsD~nDDVrRAAViAlGfvc~~D------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---- 619 (926)
T COG5116 553 VSTLLHY---AVSDGNDDVRRAAVIALGFVCCDD------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---- 619 (926)
T ss_pred Hhhhhee---ecccCchHHHHHHHHheeeeEecC------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----
Confidence 4555544 123334479999999999875322 1223445555665 5678999999999998877643
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
.....++++|..+.+.-|..+|+.|+.-+.---.+.+.+-+..+..++..++...
T Consensus 620 ~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 620 KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 2455666777656666688899999887765556666677788888888888654
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=88.82 E-value=8.4 Score=41.50 Aligned_cols=192 Identities=12% Similarity=0.120 Sum_probs=95.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCC----ChhHH--HHHHHHHHHHHhhc
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ----DTNAQ--VGAALCLAATIDAA 152 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eq----dk~vQ--~~AA~cLaalIE~a 152 (604)
|.+|+++.+ +-+.+...|+||...|.. +.+.|.+++-.+..+ .+| =++.+ ..-..-.-++..+-
T Consensus 198 YF~kvisal---~dEs~~~~r~aAl~sLr~------dsGlhQLvPYFi~f~-~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 198 YFDKVISAL---LDESDEQTRDAALESLRN------DSGLHQLVPYFIHFF-NEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhcc------CccHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 445555444 445677899999876643 244555444444433 222 11222 11122223334442
Q ss_pred CCCChhhHHHHHHHHHHHh------cCC----chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHh-----hhcC-CcH
Q 007424 153 QDPDAGKLGRMEVRLERLL------KSE----VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLG-----FLSS-QDW 216 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL------~s~----~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e-----~L~s-~Dw 216 (604)
.=.+.||++.|||-|+.+| +.+ ++.++..+...++= +-..|+.....+-|.+.. ||.. .-.
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~y---V~~~F~~~YktLkPRvtrTllKafLD~~k~~ 344 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKY---VFSNFSSSYKTLKPRVTRTLLKAFLDREKTE 344 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH---HHhhhhHhhhhhchHHHHHHHHHHHhccccc
Confidence 2233599999999988666 222 33344333333331 334554323344444433 3322 234
Q ss_pred HHHHHHHHHHHHHHHHc-----Ccchhhhh---hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 007424 217 AARKAAAEALWRLAVVE-----KDAVPEFK---GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPP 283 (604)
Q Consensus 217 ~lRkaAaDaLg~LA~~~-----ge~f~py~---~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~~~~~~~p 283 (604)
.+.-.|+-.|..|...+ +..+.-|. ...++-.++--.|.-..|=|+...||-.+|.=.-..+-+.||
T Consensus 345 sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lpnqr~~~~ 419 (450)
T COG5095 345 STQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLPNQRTLPP 419 (450)
T ss_pred chhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCCCccCCCC
Confidence 44556777777776522 22222232 223333334444555678899999999888632222344444
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=88.82 E-value=2.1 Score=38.53 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=59.8
Q ss_pred CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccC--------cchhHHHHHHHHHHHH
Q 007424 198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRF--------DKVKVVREVMNKMIEA 269 (604)
Q Consensus 198 pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRf--------DKvK~VRda~~~AL~~ 269 (604)
.++..++..|...|.+.+|.+.--|+..|-++..-.|+.|..+..+-.-..+-+|| |.=..||+.+.+.+++
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999998777766554555555554 3345899999999999
Q ss_pred HHh
Q 007424 270 WKQ 272 (604)
Q Consensus 270 wK~ 272 (604)
|.+
T Consensus 113 w~~ 115 (115)
T cd00197 113 WAS 115 (115)
T ss_pred HhC
Confidence 974
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.42 E-value=12 Score=46.02 Aligned_cols=219 Identities=16% Similarity=0.075 Sum_probs=128.9
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccc-cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSP-YITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p-~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
||+|+|+.|+.|..- .+|--|+.+||..-..- .|.= .=--|.|+|+|.|+.+-.-+|..-++--+.|-.-
T Consensus 470 PPeQLPiVLQVLLSQ------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv- 542 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQ------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV- 542 (1387)
T ss_pred ChHhcchHHHHHHHH------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-
Confidence 899999999988732 56777777777641111 1100 1124889999999999998998887766554321
Q ss_pred ccch-------------hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHHhcCC-chhH
Q 007424 114 GASA-------------FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSE-VFKA 178 (604)
Q Consensus 114 ~d~~-------------~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~-L~~RL~klL~s~-~~ka 178 (604)
|+. |..++.|= .+ -++.....||--|+.+|.+-.-.-...|+. |+.--++.|+++ ..-.
T Consensus 543 -D~SCQ~dLvKe~g~~YF~~vL~~~-~~----~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 543 -DPSCQADLVKENGYKYFLQVLDPS-QA----IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred -CchhHHHHHhccCceeEEEEecCc-CC----CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHH
Confidence 111 11122220 01 134566788888999999843322333433 444445666664 4456
Q ss_pred HHHHHHHHHHHHh--cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhH-------------
Q 007424 179 KAAGLVVVGSVIG--SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGK------------- 243 (604)
Q Consensus 179 K~alLsaIGSiA~--ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~------------- 243 (604)
|.=+.-|+|-+-+ -.+.+..-=...-..|...|+++--++|.+|.=|||++.....+.|..-+..
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~ 696 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTS 696 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhh
Confidence 6666668886654 1122211112234556666777889999999999999887543333322211
Q ss_pred -------HHHHHHhccCcchhHHHHHHHHHHH
Q 007424 244 -------CLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 244 -------~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
|+-.|=....|-..-||..+..+|.
T Consensus 697 ~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 697 IEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 1113333445777888888877764
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=88.38 E-value=29 Score=42.12 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=131.2
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCC--CchhHHHHHHHHHHHhhh-------c
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDK--PGVRKECIHVIATLSNSH-------N 75 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~k--p~~RKaaI~lLGvLae~h-------~ 75 (604)
.|+.++.+|.-+-+.|+.--+..|.-..-..+++ . |-..|.+...+.. -+.|..++..|-...+.| +
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~-~---f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLELTE-G---FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhccccch-H---HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 5788899998886666544444433222222222 2 4444444433332 266888887776666666 4
Q ss_pred cccc-----HHH-HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 76 LSPY-----ITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 76 i~p~-----L~k-Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
..|. ..+ |-..+.+.|-|++..+|.|.+.++..+|.+--=.....+++-+++.| ..-+.+.--+|-.||+-+.
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l-~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLL-SSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHH-hccchhhhhhHHHHHHHHH
Confidence 4444 222 23355667779999999999999999998852111233677777777 3355566778899998877
Q ss_pred hhcCC----CChhhHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHh----cCc-------Cc-CCchHHHHHHHHhhh
Q 007424 150 DAAQD----PDAGKLGRMEVRLERLLKSEVFK--AKAAGLVVVGSVIG----SGA-------VD-GSGLKGLVSCLLGFL 211 (604)
Q Consensus 150 E~a~d----~i~~yL~~L~~RL~klL~s~~~k--aK~alLsaIGSiA~----ag~-------~f-~pyf~~lm~~L~e~L 211 (604)
+...+ .+.+....=|-+++++....+.. ++.+-+-...+++. .++ .| .+.+.+.|..+...+
T Consensus 157 ~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l 236 (1005)
T KOG2274|consen 157 DEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL 236 (1005)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 65421 11222223345666666555444 33332233333332 121 11 144444444444444
Q ss_pred c---CCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 212 S---SQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 212 ~---s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
. -++|.+|..-+-++..+..-.+....||
T Consensus 237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~ 268 (1005)
T KOG2274|consen 237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPF 268 (1005)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 3 2579998888887777666554444444
|
|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.3 Score=38.68 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=69.5
Q ss_pred HHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------------------cccccHHHHHHHHHhhc
Q 007424 30 DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------------------NLSPYITKIINSITRNF 91 (604)
Q Consensus 30 D~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------------------~i~p~L~kIl~~IvrrL 91 (604)
-.|+..-=|+.-|-|+..+.+...+ .+......+.+|..+.+.. .+..+++.|+.++.+.|
T Consensus 13 ~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l 91 (148)
T PF08389_consen 13 AEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQIL 91 (148)
T ss_dssp HHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443344444444444443333 3566667777777775544 24556788888888888
Q ss_pred cCCC----hhHHHHHHHHHHhhhhhhccchhH--HHHHHHHHHHccCCChhHHHHHHHHH
Q 007424 92 RDKN----SALQATCISTVSSLSPRVGASAFV--TMLKLLSDALFTEQDTNAQVGAALCL 145 (604)
Q Consensus 92 kDpD----s~VR~Ac~~aLg~LAe~l~d~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cL 145 (604)
.... ..+..++.++++.+..|+.-..+. .++.-++..| +++..+..|+-||
T Consensus 92 ~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l---~~~~~~~~A~~cl 148 (148)
T PF08389_consen 92 SQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL---QSPELREAAAECL 148 (148)
T ss_dssp HHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT---TSCCCHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc---CCHHHHHHHHHhC
Confidence 7766 567888888888888876211111 1677777766 3455688888886
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=87.00 E-value=17 Score=35.87 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=85.5
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
+..|+..|.+..-+++..+|..|+.+++.+.+.-++.| ...+|+++-...||++.||..|...+..+.+.... +
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s--~-- 79 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES--L-- 79 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH--H--
Confidence 45667777777777888999999999999988777755 56899999999999999999999998888877521 0
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 121 llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
+-..+.+ .++ .|+.+..-+...... ........+.++..+++ ++-+-|...+..|-....
T Consensus 80 v~~~~~~--------gi~--~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~ 140 (187)
T PF12830_consen 80 VESRYSE--------GIR--LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFD 140 (187)
T ss_pred HHHHHHH--------HHH--HHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence 1111111 122 233333333321110 01114556777777877 334555666666555443
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=86.93 E-value=7.9 Score=43.96 Aligned_cols=196 Identities=17% Similarity=0.068 Sum_probs=116.7
Q ss_pred HHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc----------CCC
Q 007424 65 HVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT----------EQD 134 (604)
Q Consensus 65 ~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~----------eqd 134 (604)
..+-.++.+. .+.=..+++.|+-. .|++..|-+.+-+.|-++.-.+-+ ..++..|+...+| .-+
T Consensus 223 ~il~fL~sg~--f~d~~~~~~~liAs-ad~~~~V~~~ae~~LKr~~~~~ed---~~~V~~L~~Ly~G~~~~~~~~~~pa~ 296 (501)
T PF13001_consen 223 AILKFLASGF--FPDEERFPPLLIAS-ADSNSSVSDRAEDLLKRLSVSLED---PDLVDRLFDLYLGKGIPPENGRPPAS 296 (501)
T ss_pred HHHHHHHhcC--CCcHhHHhheeeEE-eCCcchHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCCchhcCCCCCC
Confidence 3444455555 34445566666655 888888988888888888766533 2477777777762 123
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHH---HHHHhcCc-CcC-CchHHHHHHH
Q 007424 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVV---GSVIGSGA-VDG-SGLKGLVSCL 207 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaI---GSiA~ag~-~f~-pyf~~lm~~L 207 (604)
+.+|..-..-|-+-+.++. ..+.++.=+...|.++ +.++|...+..+ ..+....+ ... ..-+.+...+
T Consensus 297 ~~lq~kIL~~L~kS~~Aa~-----~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 297 PRLQEKILSLLSKSVIAAT-----SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred HHHHHHHHHHHHHhHHHHh-----CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 4455554444544444332 2344444445556566 678888888877 44443211 110 1111122222
Q ss_pred Hhhh--------cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 208 LGFL--------SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 208 ~e~L--------~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
...+ .+++-.+|..|-++||.|+.-.+..|..=.+-+-..|.++ -+--..||-++.+||..|-.
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHHH
Confidence 2222 1358999999999999999987766633234444444444 46788889888888888753
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=86.77 E-value=11 Score=39.71 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=85.4
Q ss_pred HHHHhhcCCCCh--hhHHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007424 146 AATIDAAQDPDA--GKLGRMEVRLE-RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (604)
Q Consensus 146 aalIE~a~d~i~--~yL~~L~~RL~-klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaA 222 (604)
..++|+...... ..+..|+..|+ ..+.+++..+|..++.|+|-..-..... ....++.+...+..++-.+|..|
T Consensus 8 ~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~---a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 8 QSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL---AKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555443322 24567777766 7888998899999999999776555432 23334445555555799999999
Q ss_pred HHHHHHHHHHcC-cchhhhhh--------HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 223 AEALWRLAVVEK-DAVPEFKG--------KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 223 aDaLg~LA~~~g-e~f~py~~--------~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.+|--|....| +.|..... .++++|...=.+-...||..+.|++--+
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999988 66655543 5666666665555777999988887543
|
|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=86.60 E-value=23 Score=37.89 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=103.2
Q ss_pred hHHHHHhh-hhcCCCCCCchhHHHH-HHHHHHHhhh--cccccHHHHHHHHHh----hccC---CChhHHHHHHHHHHhh
Q 007424 41 LPTFLSCI-LSTNSSDKPGVRKECI-HVIATLSNSH--NLSPYITKIINSITR----NFRD---KNSALQATCISTVSSL 109 (604)
Q Consensus 41 ip~fL~~L-~e~~ss~kp~~RKaaI-~lLGvLae~h--~i~p~L~kIl~~Ivr----rLkD---pDs~VR~Ac~~aLg~L 109 (604)
+|+++..+ .||..+ .|..|..-+ .+++.++.-. .+.++++.|+..|.. -+.+ .-|-.|..--.=+.++
T Consensus 69 i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp HHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 78888855 677654 567776655 6677776655 788999998887663 3333 2267888888888888
Q ss_pred hhhhccc--hhH-HHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCC---CC-----hhhHHHHHHHHHHHhcCC-
Q 007424 110 SPRVGAS--AFV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQD---PD-----AGKLGRMEVRLERLLKSE- 174 (604)
Q Consensus 110 Ae~l~d~--~~~-sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d---~i-----~~yL~~L~~RL~klL~s~- 174 (604)
.+++... ... ..++.+++++. .+.++.+...+..+|..++++... .. ..|+-.++..++..+..+
T Consensus 148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 8876431 111 14555555553 578889999999999999888644 11 245566777777777554
Q ss_pred ---chhHHHHHHHHHHHHHhcCcCcCCc
Q 007424 175 ---VFKAKAAGLVVVGSVIGSGAVDGSG 199 (604)
Q Consensus 175 ---~~kaK~alLsaIGSiA~ag~~f~py 199 (604)
.|+....++..+-.++..+....|-
T Consensus 228 Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l 255 (319)
T PF08767_consen 228 HKSGFKLQSQILSNLFRLVESGSIQVPL 255 (319)
T ss_dssp -GGGHHHHHHHHHHHHHHHHTT-SSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 5566677777777666665444343
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.39 E-value=2.8 Score=48.95 Aligned_cols=197 Identities=14% Similarity=0.239 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccc--cHHHHHHHHHhhccCCCh
Q 007424 21 TYSQAAKELDSIAATVDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP--YITKIINSITRNFRDKNS 96 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p--~L~kIl~~IvrrLkDpDs 96 (604)
-++-.+.-|=.+++.|+.+.+ .-|+.+|..-..+++-..|- ++|-.+=..- .+.+ .-.+|+|++..++.|.++
T Consensus 307 a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~---~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~ 383 (690)
T KOG1243|consen 307 AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRL---LLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA 383 (690)
T ss_pred cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHH---HHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH
Confidence 444555556667777765542 33455555555555545553 2332221111 2222 356899999999999999
Q ss_pred hHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc
Q 007424 97 ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~ 175 (604)
.+|.-++.++..|+..+....... +++=+...= .|+...+..--..||.++-.-+.... .=+-|.-++.+.|+++-
T Consensus 384 ~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf 460 (690)
T KOG1243|consen 384 TLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPF 460 (690)
T ss_pred HHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhC-ccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCC
Confidence 999999999999999885421111 333222221 23333344444445544333221100 00114446677888887
Q ss_pred hhHHHHHHHHHHHHHhcCcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007424 176 FKAKAAGLVVVGSVIGSGAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (604)
Q Consensus 176 ~kaK~alLsaIGSiA~ag~~f~--pyf~~lm~~L~e~L~s~Dw~lRkaAaDaL 226 (604)
..+|.|.+-++.+. ..-|. -....++|.|.....+.+-.+|..|..++
T Consensus 461 ~paR~a~v~~l~at---~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i 510 (690)
T KOG1243|consen 461 VPARKAGVLALAAT---QEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAI 510 (690)
T ss_pred CCchhhhhHHHhhc---ccccchhhhhhhccccccccccCcccchhhHHHHHH
Confidence 77777655555532 22221 23345778888888888888887776554
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=86.11 E-value=42 Score=34.19 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=112.4
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHc
Q 007424 52 NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALF 130 (604)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~ 130 (604)
....+|......+.+|+.+|..-. ...+.++..|......+...++..+..-+..+-.. .+.+ .++++++.-+.
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~---~~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA---NDRHFPFLQPLLLLLI 84 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHH
Confidence 345566777788888887766323 67888888888888877776654444444444333 3322 36666665521
Q ss_pred ---------cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhcCcCcCCch
Q 007424 131 ---------TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (604)
Q Consensus 131 ---------~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL-~s~~~kaK~alLsaIGSiA~ag~~f~pyf 200 (604)
++.....+.+.|.++..+|...++ +-..+++.|..+| ++.+-.+++..+.+|.++-.++- .-|
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v---vd~ 157 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV---VDF 157 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh---ccH
Confidence 122344778889999999998765 6677888888888 66677788888888887774321 123
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC------cchhhhhhHHHHHHH
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK------DAVPEFKGKCLKIFE 249 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g------e~f~py~~~~i~~Le 249 (604)
..+-..|...| +...|-..+..|..+-..++ +....++..++..|=
T Consensus 158 ~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW 209 (234)
T PF12530_consen 158 YSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLW 209 (234)
T ss_pred HHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHH
Confidence 34445555555 33334445555555554332 334445555555543
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=86.08 E-value=17 Score=41.29 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhcCCCC-hHHHHHhhh--hc-CCCCCCchh-HHHHHHHHHHHhhhcccccHHHHHHHHHhhccCC--
Q 007424 22 YSQAAKELDSIAATVDPTL-LPTFLSCIL--ST-NSSDKPGVR-KECIHVIATLSNSHNLSPYITKIINSITRNFRDK-- 94 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~-ip~fL~~L~--e~-~ss~kp~~R-KaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDp-- 94 (604)
...|-..|+++.-.+.-.. +..++.... .. ..+.-++++ .--++.|++|+....-....+.++.++..+|..+
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~ 333 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNT 333 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCcc
Confidence 4556666676666664434 555555555 21 111122332 2336788888776644556788888888888887
Q ss_pred ChhHHHHHHHHH---HhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 95 NSALQATCISTV---SSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 95 Ds~VR~Ac~~aL---g~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
.+-+|..+..-+ .....++ .......+..+|++ .+.+++
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~------------------------~~~~l~~l~~~i~~--------------~g~p~~ 375 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHI------------------------SPQILKLLRPVILS--------------QGWPLI 375 (501)
T ss_pred ccccchhcchhhhcchHHhhhc------------------------CHHHHHHHHHHHHh--------------cCcccc
Confidence 556666665444 2222221 01111122333332 222233
Q ss_pred --------cCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh----
Q 007424 172 --------KSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP---- 238 (604)
Q Consensus 172 --------~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~---- 238 (604)
.+.+...|...+.+||.++... ..|..- -.++..|-+-|.+++-++|.+.-|||+.|+.+..+.-.
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~ 454 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDE 454 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhH
Confidence 2346678999999999998643 333211 13555555566778999999999999999997764333
Q ss_pred hhhhHHHHHHHhccCcchhHHHHHHHH
Q 007424 239 EFKGKCLKIFESKRFDKVKVVREVMNK 265 (604)
Q Consensus 239 py~~~~i~~Le~cRfDKvK~VRda~~~ 265 (604)
........++...-.+.+..+|=++.+
T Consensus 455 ~~~~~~~~l~~~~~~~~~~~~R~~avk 481 (501)
T PF13001_consen 455 QKRLLLELLLLSYIQSEVRSCRYAAVK 481 (501)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 222222223333333555666655443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.99 E-value=4.7 Score=46.52 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=102.0
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV 165 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~ 165 (604)
.|.+.|.|-||.+|-+-+.+++.- -... . -...++-|+-.-..+.|..|..+|..||.-+|= .| +.+++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alA-y~GT-g-n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D------~~~lv 588 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALA-YVGT-G-NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DD------RDLLV 588 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHH-HhcC-C-cchhHhhhheeecccCchHHHHHHHHheeeeEe--cC------cchhh
Confidence 566779999999999888887632 1111 1 112455555443356666788888777765542 33 45778
Q ss_pred HHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH
Q 007424 166 RLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (604)
Q Consensus 166 RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~ 244 (604)
+++++|... +|+++.+..-++| ||.+|... +.++..|.....+..--+|-+|+=+++.|..-.-+.+-|--..+
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLG-iacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALG-IACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhh-hhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 888888766 8999988888888 45565321 23444444444566778999999999998887765555544777
Q ss_pred HHHHHhccCcc
Q 007424 245 LKIFESKRFDK 255 (604)
Q Consensus 245 i~~Le~cRfDK 255 (604)
++-|+.-=-||
T Consensus 664 ~k~f~~vI~~K 674 (926)
T COG5116 664 IKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHhhh
Confidence 77777655565
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=7.6 Score=42.91 Aligned_cols=111 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--- 115 (604)
+--+|.++. +.+..+|+.++.=|=-+--.| .+..|+-.+++-+.-++.|-|..||++....+--+...++.
T Consensus 60 lkeLl~qlk----HhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 60 LKELLSQLK----HHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred HHHHHhhhc----CchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 445555554 677899999998777765557 67779999999999999999999999999888877766653
Q ss_pred chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 116 SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 116 ~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
.++.. ++.-+..|| .+-.+.+|.-++.=|.-+++..++..
T Consensus 136 sp~~~l~~~yi~~AM-Thit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAM-THITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred cchHHHHHHHHHHHH-hhccHHHHHhhHHHHHHHHHHcChHH
Confidence 23333 555566666 67788899888888888888765433
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=85.02 E-value=7.6 Score=38.30 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=69.1
Q ss_pred cccccHHHHHHHHHhhccC-C-----------------ChhHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHccCCCh
Q 007424 75 NLSPYITKIINSITRNFRD-K-----------------NSALQATCISTVSSLSPRVGAS-AFVTMLKLLSDALFTEQDT 135 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkD-p-----------------Ds~VR~Ac~~aLg~LAe~l~d~-~~~sllkPL~eaL~~eqdk 135 (604)
.|.|||+.|+|.|..-++= + .--+|.+|.+++-.+-+.+... ....|+.-+...| .| +.
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~~ 79 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-EH 79 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--H
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-cH
Confidence 4679999999999855442 2 2458999999999987766432 2333666666666 45 66
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhc
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK 172 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~ 172 (604)
.++.-+..-|.+++...+..+...|..|++.|-+.|+
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 7888899999999988877777777788888777774
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.85 E-value=19 Score=43.28 Aligned_cols=191 Identities=14% Similarity=0.054 Sum_probs=121.1
Q ss_pred HHHHHhhhhcCCC----CCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--
Q 007424 42 PTFLSCILSTNSS----DKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-- 115 (604)
Q Consensus 42 p~fL~~L~e~~ss----~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-- 115 (604)
..|-..+.+...+ +.|-.|-++|+ ++++-+-+.=.+||=.++|.+++.|+-+..+|+.=|+.++-.+-..-..
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIK-y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~ 533 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIK-YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN 533 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccc-eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence 4444555554444 34445555544 4555554555678899999999999999999988777777655322111
Q ss_pred ---------chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh----cCC-chhHHH
Q 007424 116 ---------SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL----KSE-VFKAKA 180 (604)
Q Consensus 116 ---------~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL----~s~-~~kaK~ 180 (604)
.|+.. ++..||+++- -.++.--..-.-|+-+++--+++.+.++.+.++.+|.+++ ++| +.+.--
T Consensus 534 ~~if~~~~iap~~~~ll~nLf~a~s-~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnH 612 (960)
T KOG1992|consen 534 AKIFGAEDIAPFVEILLTNLFKALS-LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNH 612 (960)
T ss_pred ccccchhhcchHHHHHHHHHHHhcc-CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHH
Confidence 23333 6777777773 2222111234456777777777878788888777777666 455 445556
Q ss_pred HHHHHHHHHHh-cCcCc---CC-chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 181 AGLVVVGSVIG-SGAVD---GS-GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 181 alLsaIGSiA~-ag~~f---~p-yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
.+...||.++. .+..- .+ +-..++|.++..|.+|-.+.=--+...|+.+....+
T Consensus 613 YLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 613 YLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999885 44332 23 334577888888877766655667777777776554
|
|
| >PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins | Back alignment and domain information |
|---|
Probab=84.76 E-value=11 Score=37.29 Aligned_cols=106 Identities=16% Similarity=0.242 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHH-hhh
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS-NSH 74 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L-------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLa-e~h 74 (604)
.+||--++.||+. .+|..+.++.|-.++.++ +-+.-+-+.+||..-. ..+| ..|+..|--|. ..+
T Consensus 2 ~eikplLIsCL~~---q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 2 REIKPLLISCLTM---QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLY 74 (174)
T ss_pred cchHHHHHHHHHh---hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhh
Confidence 3688999999987 455566666666655542 4455788889997533 2222 45666676665 435
Q ss_pred --cccccHHHHHHHHHhhccCCCh---hHHHHHHHHHHhhhhhhcc
Q 007424 75 --NLSPYITKIINSITRNFRDKNS---ALQATCISTVSSLSPRVGA 115 (604)
Q Consensus 75 --~i~p~L~kIl~~IvrrLkDpDs---~VR~Ac~~aLg~LAe~l~d 115 (604)
++.|+|.++++.+.++|.+|.. ...-.|..+.-.++=++.+
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e 120 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLE 120 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999954 2233344333344444443
|
Many of these members contain a repeated region. |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.75 E-value=5.3 Score=49.21 Aligned_cols=168 Identities=11% Similarity=0.162 Sum_probs=102.6
Q ss_pred CC-hHHHHHhhhhc----CCCCCCchhHHHHHHHHHHHhh-h-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 39 TL-LPTFLSCILST----NSSDKPGVRKECIHVIATLSNS-H-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 39 e~-ip~fL~~L~e~----~ss~kp~~RKaaI~lLGvLae~-h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
.+ +..|.+.+.+- ....+|..+.+|.++||-+.-. + |+..|+|-++.++-+ -|++.||.-|+-|+|-|+-
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimek---sp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEK---SPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCCceeeecchheccchhh
Confidence 44 44444444332 3445678899999999987433 3 777888877666543 5889999888888888876
Q ss_pred hhccchhHHHHHHHHHHH---ccCCChhHHHHHHHHHHHHHhhcCCCChh--------------hHHHHHHHHHHHhcCC
Q 007424 112 RVGASAFVTMLKLLSDAL---FTEQDTNAQVGAALCLAATIDAAQDPDAG--------------KLGRMEVRLERLLKSE 174 (604)
Q Consensus 112 ~l~d~~~~sllkPL~eaL---~~eqdk~vQ~~AA~cLaalIE~a~d~i~~--------------yL~~L~~RL~klL~s~ 174 (604)
.. + .++.|-.+.| ++|.++.|+..|.+-|.-+|=+--=.+.+ -...|...+++-|.+.
T Consensus 991 ~f--p---nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 991 RF--P---NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred hc--c---cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 64 2 2444444443 36888889998888887776542111122 3344555666666666
Q ss_pred chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCc
Q 007424 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQD 215 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~D 215 (604)
+-.+-+.+-..|+-+..-+-.+.+| ..+|..|++++..++
T Consensus 1066 ~n~iynlLPdil~~Ls~~~l~~~~~-~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1066 GNTIYNLLPDILSRLSNGNLEEESY-KTVMEFLIGLIKKDE 1105 (1251)
T ss_pred ccchhhhchHHHHhhccCcccchhh-HHHHHHHHHHhcccc
Confidence 5333333334444322222223344 589999999887653
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.66 E-value=26 Score=41.46 Aligned_cols=116 Identities=11% Similarity=0.225 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cc-cccHHHHHHHHHhhccC
Q 007424 19 RDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL-SPYITKIINSITRNFRD 93 (604)
Q Consensus 19 rDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i-~p~L~kIl~~IvrrLkD 93 (604)
.++.-+=++-+|.|.+-++++. ...+|..|..+..+.....-..++..++.+++.- ++ .+-||+|... -++-
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l---~~~t 440 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL---AFKT 440 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc---hhcc
Confidence 3466677888999999999888 6888999988888888888999999999998877 22 2234444333 4556
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ 138 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ 138 (604)
.+..|+..|+.+++.+.+.+........+.|++..+ .-.++.+-
T Consensus 441 t~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv 484 (700)
T KOG2137|consen 441 TNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIV 484 (700)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHH
Confidence 777899999999999997764433333777777777 22344433
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=84.41 E-value=41 Score=35.21 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC---h---hhHHHHHHHHHHHhc--------CCchhHHHHHHHH
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---A---GKLGRMEVRLERLLK--------SEVFKAKAAGLVV 185 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i---~---~yL~~L~~RL~klL~--------s~~~kaK~alLsa 185 (604)
.+++|++..+ ++.++.+...++.||..+++..+... . ++..-+-+-|..+|- ..+..+=.+++.|
T Consensus 119 liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3666666666 78888999999999999999876554 2 223334445666665 4455666777888
Q ss_pred HHHHHhcC--cCcCCchHHHHHHHHh-hh----cCC---cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHh
Q 007424 186 VGSVIGSG--AVDGSGLKGLVSCLLG-FL----SSQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES 250 (604)
Q Consensus 186 IGSiA~ag--~~f~pyf~~lm~~L~e-~L----~s~---Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~ 250 (604)
+-+++.+- ....++...+...|.+ .| ... .-.+|...++.|..+....|-...-|..+++.+|.+
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88887642 2222444444444444 22 223 488899999999999999996666677888877753
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=83.79 E-value=6.9 Score=41.32 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=82.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHH--------HHHHHHHhhccCCChhHHHHHHHHHHhhhh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--------KIINSITRNFRDKNSALQATCISTVSSLSP 111 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~--------kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe 111 (604)
...|+++|... +.+....++.+-+++-+.... ...+.+- ..+...++.|.-+|..+...++..++.|..
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66777777765 567789999999999987766 2222221 266677778888999999999999999999
Q ss_pred hhccchhH---HHHHHHHHHHccC---CChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHh------cCC-ch
Q 007424 112 RVGASAFV---TMLKLLSDALFTE---QDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLL------KSE-VF 176 (604)
Q Consensus 112 ~l~d~~~~---sllkPL~eaL~~e---qdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL------~s~-~~ 176 (604)
+....... .++++++..|... .+...|..|..||..+...-.. ...+ ...++.|..+| .++ ++
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~--R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY--RQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH--HHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh--HHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 87654433 4788888888432 2345778889999988864211 1111 34555566666 222 45
Q ss_pred hHHHHHHHHHH
Q 007424 177 KAKAAGLVVVG 187 (604)
Q Consensus 177 kaK~alLsaIG 187 (604)
+..-.++-|+=
T Consensus 213 Ql~Y~~ll~lW 223 (312)
T PF03224_consen 213 QLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55444444444
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans | Back alignment and domain information |
|---|
Probab=83.77 E-value=14 Score=38.15 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHhhh----------cccccHHHHHHHHHhhccCCC-hhHHHHHHHHHHhhhhhhcc---chhHH----
Q 007424 59 VRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRVGA---SAFVT---- 120 (604)
Q Consensus 59 ~RKaaI~lLGvLae~h----------~i~p~L~kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~l~d---~~~~s---- 120 (604)
.=|++-.+||.+++.. .-..++.+|--.++.-|..-- -++=.++..++..+++.+.. +....
T Consensus 63 ~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~ 142 (255)
T PF10350_consen 63 SIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEE 142 (255)
T ss_pred HHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 4477888888887422 333467777777777665532 45777888999999999873 22222
Q ss_pred HHHHHHHHHccC-CCh--hHH--HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch--------hHHHHHHHHHH
Q 007424 121 MLKLLSDALFTE-QDT--NAQ--VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF--------KAKAAGLVVVG 187 (604)
Q Consensus 121 llkPL~eaL~~e-qdk--~vQ--~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~--------kaK~alLsaIG 187 (604)
.+.-+++.+.++ +.. ... +|--+++.+++-+.+....+.|+..|.+|+++.+.+.. -.+..++.++.
T Consensus 143 WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr 222 (255)
T PF10350_consen 143 WLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILR 222 (255)
T ss_pred HHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHH
Confidence 666777777433 221 222 34556667777775544347899999999999988743 36677889999
Q ss_pred HHHhc---CcCcCCchHHHHHHHHhhhcCCcHH
Q 007424 188 SVIGS---GAVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 188 SiA~a---g~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
+|..- +....||++..+..-.+.+.+++|+
T Consensus 223 ~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 223 AIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 98863 3444599999888888888899984
|
Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas []. |
| >PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein | Back alignment and domain information |
|---|
Probab=83.31 E-value=28 Score=40.18 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
.+.=+++|-..+..|+.+ ...|+..|..... .-++..+++-+..++.|+..| ..|++.++..+++.+..+......
T Consensus 53 l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~--~~yl~~vl~~LV~~f~p~~~~~~~ 129 (563)
T PF05327_consen 53 LIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ--PKYLSPVLSMLVKNFIPPPSSIAE 129 (563)
T ss_dssp HHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH---GGGHHHHHHHHHHGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhccCCCccccc
Confidence 333444555555567777 7777888876544 334567788888888888877 779999999999999887765332
Q ss_pred --------------HHHHHHHhhhhhhccchhHHHHHHHHHHHccC--CChhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 007424 101 --------------TCISTVSSLSPRVGASAFVTMLKLLSDALFTE--QDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (604)
Q Consensus 101 --------------Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e--qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~ 164 (604)
-+-.+|..|.... |.-...+.|++..-|-. .....+..=...|=.+++.++..-.+.+.-++
T Consensus 130 ~~~~~~~~~~~~~~~vH~~L~~Il~lv--P~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi 207 (563)
T PF05327_consen 130 WPGCPPEKRREIYERVHDALQKILRLV--PTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLII 207 (563)
T ss_dssp ---------------HHHHHHHHHHH---GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHH
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3556666666554 33334677777666632 23445555555566666666433345677777
Q ss_pred HHHHHH
Q 007424 165 VRLERL 170 (604)
Q Consensus 165 ~RL~kl 170 (604)
.|++++
T Consensus 208 ~rLi~i 213 (563)
T PF05327_consen 208 ERLIKI 213 (563)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
|
RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.5 Score=51.05 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhhc---CChhHHHHHHHHHHHHHhhcCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 4 ALKTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KL---sDrDT~r~A~~eLD~lA~~L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
+.-++++-+|.|| -||.++-.=++-++.++.+|+++++ ..+++++.--....++..|..+++.|.+|+.--.-...
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 3445666677666 6888999999999999999997663 45555555555555779999999999999875511122
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
=..++-++-+.=.|.+..+|--.-..+|-++.++.-.... .+.-+..-+| .+.-.....++-++|.+..+..+. .+
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~~~~--~~ 482 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEYFDQ--SE 482 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhh-cCCCCCchhhhhHHHhhcccccch--hh
Confidence 3345555555555888999999999999999997421111 1344444456 344445777888888888875432 34
Q ss_pred hHHHHHHHHHHHhcCCchhHHHH
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAA 181 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~a 181 (604)
.-.+|+|++.-+.-.+...++..
T Consensus 483 va~kIlp~l~pl~vd~e~~vr~~ 505 (690)
T KOG1243|consen 483 VANKILPSLVPLTVDPEKTVRDT 505 (690)
T ss_pred hhhhccccccccccCcccchhhH
Confidence 45677777777776665554433
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.98 E-value=70 Score=34.10 Aligned_cols=186 Identities=21% Similarity=0.245 Sum_probs=104.8
Q ss_pred HhhhcCChh----HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------cccccHH
Q 007424 12 LLNKLSDRD----TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSPYIT 81 (604)
Q Consensus 12 ~L~KLsDrD----T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------~i~p~L~ 81 (604)
....|.|.+ -++-|...|+.+. .++. ++.+..+.+.+...+|.-|..++..+=... ..+||..
T Consensus 72 l~~vl~desq~pmvRhEAaealga~~---~~~~----~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S 144 (289)
T KOG0567|consen 72 LVEVLLDESQEPMVRHEAAEALGAIG---DPES----LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS 144 (289)
T ss_pred HHHHhcccccchHHHHHHHHHHHhhc---chhh----HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc
Confidence 344555555 2344777777765 3332 333444445677789999999999884444 2334432
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-----------------HHHHHHHHHccCCChhHHHHHHHH
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-----------------MLKLLSDALFTEQDTNAQVGAALC 144 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-----------------llkPL~eaL~~eqdk~vQ~~AA~c 144 (604)
.||-+. |....+..|...+.|...+. -+.-|++.| ....+-.+.-+|+|
T Consensus 145 ----------vdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l-~~~SalfrhEvAfV 210 (289)
T KOG0567|consen 145 ----------VDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGL-ADDSALFRHEVAFV 210 (289)
T ss_pred ----------CCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhc-ccchHHHHHHHHHH
Confidence 455543 34444555555555432111 122233333 22233344444454
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007424 145 LAATIDAAQDPDAGKLGRMEVRLERLLKS--EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (604)
Q Consensus 145 LaalIE~a~d~i~~yL~~L~~RL~klL~s--~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaA 222 (604)
|.-+.. +.-+|.|.+.|.. .+..++--+..|+|+|+. +.+++.|++|+.+++--+|..+
T Consensus 211 fGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 211 FGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred Hhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---------HHHHHHHHHHcCCcHHHHHHHH
Confidence 433322 1123444444432 367788778888886552 3688999999999999999988
Q ss_pred HHHHHHHHHHcCcch
Q 007424 223 AEALWRLAVVEKDAV 237 (604)
Q Consensus 223 aDaLg~LA~~~ge~f 237 (604)
.-+|-.+-..-++.|
T Consensus 272 ~valdm~eyens~~~ 286 (289)
T KOG0567|consen 272 EVALDMLEYENSKEF 286 (289)
T ss_pred HHHHHHHHHhccccc
Confidence 877766554444444
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=82.20 E-value=69 Score=33.52 Aligned_cols=186 Identities=14% Similarity=0.108 Sum_probs=105.1
Q ss_pred hhhcCChhHHHHHHHHHHHHHh--hcCCCChHHHHHhhhhc--CCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHH
Q 007424 13 LNKLSDRDTYSQAAKELDSIAA--TVDPTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINS 86 (604)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~lA~--~L~pe~ip~fL~~L~e~--~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~ 86 (604)
++||.|..+...|++-|..|+. .++++....++..|.+. .++.-...|..++.+|..+.+-| .+...=+.++..
T Consensus 48 ~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~ 127 (262)
T PF14500_consen 48 CSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG 127 (262)
T ss_pred HHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence 4688899999999999999884 34666677777777653 23334578999999999998887 443333444444
Q ss_pred HHh---hccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc-------c--CCChh--HHHHHHHHHHHHHhhc
Q 007424 87 ITR---NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF-------T--EQDTN--AQVGAALCLAATIDAA 152 (604)
Q Consensus 87 Ivr---rLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~-------~--eqdk~--vQ~~AA~cLaalIE~a 152 (604)
++. +=+||-=. --+.+-+..+.... ++..+..-||+.++ . .+++. ...--..+|...+-+.
T Consensus 128 ~i~~~~gEkDPRnL--l~~F~l~~~i~~~~---~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 128 FIQLIDGEKDPRNL--LLSFKLLKVILQEF---DISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHhccCCCHHHH--HHHHHHHHHHHHhc---ccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 333 33444421 11222222232222 12236666666664 1 22331 1111122222222111
Q ss_pred CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcC-cCCchHHHHHHH
Q 007424 153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKGLVSCL 207 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~-f~pyf~~lm~~L 207 (604)
..+-+..+|-|++.|.+....+|.-.+..+...+.. |.. ..||...+-..|
T Consensus 203 ----~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 203 ----PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred ----HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 134466888888999999888998888887766643 221 225554444444
|
|
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
Probab=81.98 E-value=24 Score=35.44 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcC-c--------------CCc
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAV-D--------------GSG 199 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~-f--------------~py 199 (604)
.+-.-....+.++.+.++..-.+++.+++..|.++-++++|..|..+=.+||+.+. +|.+ + .+-
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ 94 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcc
Confidence 34455566677778877766668999999999999999999999999999999886 4522 2 111
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhCCCC
Q 007424 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKR-FDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 200 f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cR-fDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
=.+++|.|.+++...... ...+.|-|.+..|-+.-..+. -.+.-..+.--.-.-|+|--+|+-
T Consensus 95 raWLLPlLr~~i~~~~L~--------------fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~F 158 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNASLS--------------FFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGF 158 (198)
T ss_pred cchhHHHHHHhccCCChH--------------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHh
Confidence 134667776666554333 223455555444444333211 112222222223445889888854
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.71 E-value=55 Score=37.85 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
+.||+-.+...+--.+-.....|+--|..++.+++|+. +|-+|..|..-.. ..+.|..+++++|.+++--...|.
T Consensus 387 e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 387 ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--QAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--chhHHHHHHHHHHHHHHHHHhCcH
Confidence 34444444444423345577888889999999998777 7999999885432 334999999999999776644454
Q ss_pred -HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 80 -ITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 80 -L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
+..++..+..++++.. .-.|+..+.-.++..+
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 4555567777887766 5555555555555554
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.67 E-value=78 Score=33.74 Aligned_cols=202 Identities=16% Similarity=0.146 Sum_probs=114.0
Q ss_pred HHHHHHHhhhcCChhHHHHHHH-HHHHHHhhc---CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh----h-h--
Q 007424 6 KTSVNGLLNKLSDRDTYSQAAK-ELDSIAATV---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN----S-H-- 74 (604)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~-eLD~lA~~L---~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae----~-h-- 74 (604)
-.++++.|..+-..++.-.|+. +++.+..++ ..+--..++..+.....+-+++.||.-+.++|.+.. . .
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 3455555555544554444433 346666665 222246666777777778888999999999999864 2 2
Q ss_pred cccccHHHHHHHHHhhccCCChhHHH---HHHHHHHhhhhhhcc--------------chhHH-HHHHHHHHHccC-CCh
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQA---TCISTVSSLSPRVGA--------------SAFVT-MLKLLSDALFTE-QDT 135 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~---Ac~~aLg~LAe~l~d--------------~~~~s-llkPL~eaL~~e-qdk 135 (604)
++.+.++.++..+.+...-|-+.... .|+.++-.+...-.+ .+..+ |+.|= ++.. .+.
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~k---vyskl~~~ 176 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEK---VYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHH---HHhccCCH
Confidence 77788888888888888777665321 122222111111110 00011 11111 1112 233
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhh-HHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007424 136 NAQVGAALCLAATIDAAQDPDAGK-LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS 212 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a~d~i~~y-L~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~ 212 (604)
....-.+.+|.++.....+...+- ...+-.-++-++-++ +..+|..++.++..+....... .-..++..+..+|.
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKWLS 254 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHH
Confidence 344556777777776654433222 344555677777777 8899999999998777543321 23345666666663
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.93 E-value=39 Score=39.69 Aligned_cols=140 Identities=15% Similarity=0.089 Sum_probs=94.9
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhc-------C-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccc
Q 007424 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATV-------D-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLS 77 (604)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L-------~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~ 77 (604)
+..++.++..+.|-|-.+.|.-.|..+++.+ . .+...++++.+. .+...+.+.++-+|-.++-.+ +
T Consensus 378 t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~----dp~~~i~~~~lgai~NlVmef--s 451 (678)
T KOG1293|consen 378 TESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM----DPEIMIMGITLGAICNLVMEF--S 451 (678)
T ss_pred HHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh----CcchhHHHHHHHHHHHHHhhc--c
Confidence 3456677788889998888888777776653 2 222577777773 333455555555555444444 4
Q ss_pred ccHHHH-----HHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007424 78 PYITKI-----INSITRNFRDKNSALQATCISTVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (604)
Q Consensus 78 p~L~kI-----l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaal 148 (604)
++=.++ +-.|..-+.|+|+.+|.-++|+|..+.-...+ ++..-+-..++.-+.+++++.||..+..-|-.+
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 444443 45788899999999999999999998766532 222225556666666889999999888877777
Q ss_pred Hhh
Q 007424 149 IDA 151 (604)
Q Consensus 149 IE~ 151 (604)
+.+
T Consensus 532 ~c~ 534 (678)
T KOG1293|consen 532 TCN 534 (678)
T ss_pred hcC
Confidence 655
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.88 E-value=1e+02 Score=36.89 Aligned_cols=251 Identities=20% Similarity=0.198 Sum_probs=144.7
Q ss_pred HHHHHHHHhhhcCChhHHH--HHHHHHHH-----HHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--c
Q 007424 5 LKTSVNGLLNKLSDRDTYS--QAAKELDS-----IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N 75 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r--~A~~eLD~-----lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~ 75 (604)
+|.-+.++-+.|..||+-. .|++.+-. +++.+.++ ||- .|- +.++ -+.+|+.+.++|=.|-+.. .
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~K---lLv-S~~~-~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IPK---LLV-SGSS-MDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hHH---HHh-CCcc-hHHHHHHHHHHHHHHHhcCccc
Confidence 5666677777887777443 34433322 23333221 332 222 2222 3466666665555554434 3
Q ss_pred ccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc-------c---------CCChhHH
Q 007424 76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF-------T---------EQDTNAQ 138 (604)
Q Consensus 76 i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~-------~---------eqdk~vQ 138 (604)
+.| ..-..-|+..|.|.+-.|--|+.-=+-+|+.+-. +... -+++-+.-|. . =+.|-.|
T Consensus 183 ~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p--~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 183 VNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP--ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCC--HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 333 2233456778999998887777776777766652 2211 1122111111 1 1245566
Q ss_pred HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhc----CC---chhHHHH-HHHHHHHHHhcCcCcCCchHHHHHHHHh
Q 007424 139 VGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLK----SE---VFKAKAA-GLVVVGSVIGSGAVDGSGLKGLVSCLLG 209 (604)
Q Consensus 139 ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~----s~---~~kaK~a-lLsaIGSiA~ag~~f~pyf~~lm~~L~e 209 (604)
...+..|..+ ..-.|+ ....|.+++++++...+ +. +..||.| +.++|.-+++.-.. ..-+..++..|.+
T Consensus 259 vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e-~~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 259 VKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE-PELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 6666666554 222222 13456666666665554 22 2336766 45677766664322 2345678999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 210 FLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 210 ~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
||++.+..+|=-|.|.+..|+.... |.+.-+.+.+|..|. -+|--.||.-+.+-|-++
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk---terDvSirrravDLLY~m 396 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK---TERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHH
Confidence 9999999999999999999999643 777777777776665 566677777666666555
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=80.76 E-value=91 Score=33.95 Aligned_cols=105 Identities=10% Similarity=0.139 Sum_probs=57.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHh----cCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchh
Q 007424 166 RLERLLKSEVFKAKAAGLVVVGSVIG----SGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVP 238 (604)
Q Consensus 166 RL~klL~s~~~kaK~alLsaIGSiA~----ag~~f-~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~ 238 (604)
++++.+..++|.+-+-+...+..+.. +.+.| ...++.........|.++++-+|..++..||.|-..-. ....
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 35555555566554444443333331 11222 24566777777888888888888888888888775221 3333
Q ss_pred hhh--hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 EFK--GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 py~--~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
-|. ...++++-..=-||-|.||=-|.......
T Consensus 248 ~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 248 RYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 343 33455555555599999885444444433
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=80.40 E-value=1.1e+02 Score=34.59 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcC-------------CCChHHHHHhhhhcCCCCCCchhHHHHHHHHH
Q 007424 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-------------PTLLPTFLSCILSTNSSDKPGVRKECIHVIAT 69 (604)
Q Consensus 3 ~eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~-------------pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGv 69 (604)
+...+-.+.+|.+.+..||.+..+..++-|.+..| ++...+|+..|. +++.+.--.+...++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~----~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN----RQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc----CCchhHHHHHHHHHHH
Confidence 34556678889999999999999999998888754 344566666553 4566777777777777
Q ss_pred HHhhh---cccccHHHHHHHHHhhccCCC-hhHHHHHHHHHHhhhhhh-ccchhHH--HHHHHHHHHccCC-ChhHHHHH
Q 007424 70 LSNSH---NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRV-GASAFVT--MLKLLSDALFTEQ-DTNAQVGA 141 (604)
Q Consensus 70 Lae~h---~i~p~L~kIl~~IvrrLkDpD-s~VR~Ac~~aLg~LAe~l-~d~~~~s--llkPL~eaL~~eq-dk~vQ~~A 141 (604)
+.... .-...++.++..+...|+.++ ......|+..+..|...= -+.-|.. .+++|+..|-... +...|--+
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 74322 222356667778888887654 445666666665553321 0011111 6778888774322 44567788
Q ss_pred HHHHH--HHHhhcCCCChhhH--HHHHHHHHHHhcCC
Q 007424 142 ALCLA--ATIDAAQDPDAGKL--GRMEVRLERLLKSE 174 (604)
Q Consensus 142 A~cLa--alIE~a~d~i~~yL--~~L~~RL~klL~s~ 174 (604)
..|+= ++-+.+ .+.+ ..+++.|..+++..
T Consensus 208 ll~lWlLSF~~~~----~~~~~~~~~i~~l~~i~k~s 240 (429)
T cd00256 208 IFCIWLLTFNPHA----AEVLKRLSLIQDLSDILKES 240 (429)
T ss_pred HHHHHHHhccHHH----HHhhccccHHHHHHHHHHhh
Confidence 88872 222111 1111 34777777777554
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=80.36 E-value=5.7 Score=37.07 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhccchhHH---HHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 82 KIINSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 82 kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d~~~~s---llkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
+++..+++.| ...|+.+-..||.=+|.++.++..+.... =.+..+..|+.+.|+.|+.-|-.|+.+++-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666677777 33478899999999999999986532221 467888888889999999999999988763
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 4e-09
Identities = 85/564 (15%), Positives = 157/564 (27%), Gaps = 179/564 (31%)
Query: 44 FLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCI 103
FL + T + + I +N + K +++R L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKY--NVSR--LQPYLKLR---- 141
Query: 104 STVSSLSPRVGASAFVT---ML---K--LLSDAL-----------------FTEQDTNAQ 138
+ L P + V +L K + D ++
Sbjct: 142 QALLELRP----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 139 V---GAALCLAATIDAAQDPDAGKLGRMEV-----RLERLLKSEVFKAKAAGLVVVGSVI 190
V L + D ++ + L RLLKS+ ++ L+V+ +V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQ 254
Query: 191 GSGAVDGSGLKGLVSC-LLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249
+ A + L C +L L+++ K + L L E
Sbjct: 255 NAKAWNAFNLS----CKIL--LTTRF----KQVTDFLSAATTTHISLDHHSMT--LTPDE 302
Query: 250 SKR-FDKVKVVREVMNKMIEAWKQVPDLSEEA---SP------------PPQSLDPSKED 293
K K + DL E +P + D K
Sbjct: 303 VKSLLLKY------------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 294 GSDRRYLTESRSSSTKGL---ELKKR----SILASKSTPPDSSFPTTARKRGFLKKVSPA 346
D+ LT SS L E +K S+ PP + +
Sbjct: 351 NCDK--LTTIIESSLNVLEPAEYRKMFDRLSVF-----PPSA-------------HIPTI 390
Query: 347 VLHKV-DQKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKRALFNWSS 405
+L + SD ++ SLV+ + + I + K E + AL
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----- 445
Query: 406 DDKVHK-----------LRSGSRVTPYNEE------SHEFTVSDNTE----------NLH 438
H+ S + PY ++ H ++ E +
Sbjct: 446 ----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 439 -----IKHK------------DCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGM-Q 480
I+H + L + + + + L++ + F+ + E +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 481 SLETRVLGLELAL---DEISYDLA 501
S T + L +AL DE ++ A
Sbjct: 562 SKYTDL--LRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 95/665 (14%), Positives = 170/665 (25%), Gaps = 218/665 (32%)
Query: 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKE 62
H + + +D S D+ D + ILS +E
Sbjct: 5 HHMDFETGEH--QYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSK---------EE 50
Query: 63 CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TM 121
H+I S ++++ R + FV +
Sbjct: 51 IDHIIM--------SK------DAVSGTLR----------LFWTLLSKQEEMVQKFVEEV 86
Query: 122 LKL----LSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV-RLERL--LKSE 174
L++ L + TE D + D + V RL+ L+
Sbjct: 87 LRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQA 143
Query: 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234
+ + + A V++ V+GSG K + + A + V K
Sbjct: 144 LLELRPAKNVLIDGVLGSG-------K---TWV--------------ALDVCLSYKVQCK 179
Query: 235 DAVPEFKGKCLKIF--ESKRFDKVKVVREVMNKMI----EAWKQVPDLSEEASPPPQSLD 288
+F KIF K + + V E++ K++ W D S S +
Sbjct: 180 ---MDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIH 228
Query: 289 PSKEDGSDRRYLTESR-------------SSSTKGLELK--------KRSILASKSTPPD 327
+ RR L + + L + + S
Sbjct: 229 SIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 328 SSFPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISA--PSGASLVDAHEDGTVLKIRN 385
+ ++L K +P D ++ P S++ ++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-----AESIRDGL 341
Query: 386 N--ENTK-----------------LPKPETKR-----ALFN-------------WSSDDK 408
+N K L E ++ ++F W K
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 409 ------VHKLRSGSRVTPYNEESHEFTVS------------DNTENLH---------IKH 441
V+KL S V ++ E T+S +N LH K
Sbjct: 402 SDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 442 KDCEDLSTIRNQ----------LVQIEQQQSS------LLDLLQRFI-------GRSESG 478
D +DL L IE + LD RF+ + +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNA 516
Query: 479 MQSLETRVLGLELALDEIS-----YDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRK 533
S+ + L+ I Y+ V+ + D L +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 534 TEGRY 538
E +
Sbjct: 576 DEAIF 580
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 57.0 bits (136), Expect = 1e-08
Identities = 47/380 (12%), Positives = 112/380 (29%), Gaps = 21/380 (5%)
Query: 12 LLNKLSDRDTYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIH 65
L + ++ ++ S + LD +A + P+ L+C+L +S + VRK I
Sbjct: 138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTII 197
Query: 66 VIATLSNSHN---LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
+ L S I +++ +++N + CI+ +S + ++
Sbjct: 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 257
Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAG 182
L+ + D + + + + + + LK +
Sbjct: 258 PLVVKFCNVDDD-ELREYCIQAFESFVRRCPKEVYPHVSTI---INICLKYLTYDPNYNY 313
Query: 183 LVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKG 242
A G W R+AAA+ L + + +PEF
Sbjct: 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373
Query: 243 KCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDLSEEASPPPQSLDPSKEDGSDRRYLTE 302
S+ ++ + V+ + A+ + + D ++ + L
Sbjct: 374 TVSPALISRFKEREENVKAD---VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 430
Query: 303 SRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRG-----FLKKVSPAVLHKVDQKKPS 357
+ K L + + + + + P ++ ++ K S
Sbjct: 431 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSS 490
Query: 358 DWRDQISAPSGASLVDAHED 377
+ ++ H
Sbjct: 491 SNLKIDALSCLYVILCNHSP 510
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 3e-06
Identities = 40/276 (14%), Positives = 84/276 (30%), Gaps = 29/276 (10%)
Query: 4 ALKTSVNGLLNKLSDRDTYS---QAAKELDSIAATVDP-----TLLPTFLSCILSTNSSD 55
A+K + L DT AA +L A ++ ++P F + S
Sbjct: 160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS- 218
Query: 56 KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115
VR + ++ ++ ++ + DK+ ++ + L VG
Sbjct: 219 ---VRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275
Query: 116 SAFVTML-----KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170
T L L+ D + + C + D ++ ++ ++ L
Sbjct: 276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC---IKEL 332
Query: 171 LKSEVFKAK---AAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALW 227
+ K A+ ++ + ++G ++ L+ L L + R L
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNT----IEHLLPLFLAQLKDECPEVRLNIISNL- 387
Query: 228 RLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVM 263
V E + + L D VR +
Sbjct: 388 -DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 14/226 (6%)
Query: 12 LLNKLSDRDTY--SQAAKELDSIAATVDPT-LLPTFLSCILSTNSSDKPGVRKECIHVIA 68
L +L D LD + + L + L I+ K VR I +
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 69 TLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAFVTMLKLLSD 127
L+ + + K+ + D A++ S + L + G A T++ +
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 128 ALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAK---AAGLV 184
D N + + M + R+ V + A L
Sbjct: 488 MS---GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 185 VVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230
+G ++ + + + L QD + A EAL L+
Sbjct: 545 KIGPILDNSTLQSE----VKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 33/256 (12%), Positives = 80/256 (31%), Gaps = 8/256 (3%)
Query: 9 VNGLLNKLSDRDTY--SQAAKELDSIAATVDP-TLLPTFLSCILSTNSSDKPGVRKECIH 65
+ + +SD + + S A + ++ + + L L+ + P VR I
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385
Query: 66 VIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLL 125
+ ++ + ++ +I D ++ I + L+ ++G F L L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
Query: 126 SDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVV 185
A + + A L ++ A + ++ + + + L
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFC 503
Query: 186 VGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245
+ + D K ++ +L R A++L + + +
Sbjct: 504 INVLSEVCGQD-ITTKHMLPTVLRMAGDPVANVRFNVAKSL--QKIGPILDNSTLQSEVK 560
Query: 246 KIFESKRFDKVKVVRE 261
I E D+ V+
Sbjct: 561 PILEKLTQDQDVDVKY 576
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 9e-06
Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 15/253 (5%)
Query: 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS--NSH 74
+ D A + + L ++ D V K I +I ++
Sbjct: 6 EEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED 65
Query: 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQD 134
P + K+ + + ++ + A ++ P + S M+ +L +
Sbjct: 66 LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS----MIPVLFANY---RI 118
Query: 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA 194
+ + + A A +P + +L S+ + K L + ++ G
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTALNFIEAM---GE 173
Query: 195 VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD 254
+ + ++ L D R +A EAL LA + + L+
Sbjct: 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKR-LEELNDTSSL 232
Query: 255 KVKVVREVMNKMI 267
K V+E +++++
Sbjct: 233 VNKTVKEGISRLL 245
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 18/235 (7%)
Query: 36 VDPT-LLPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITKIINSITRNF- 91
+DP +L K +RKE + V+ L + + +++++ +
Sbjct: 7 LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT 66
Query: 92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE-QDTNAQVGAALCLAATID 150
+D N L A ++ L+ + F +L + ++ V AL ID
Sbjct: 67 KDSNVVLVAMAGKCLALLAKGLAKR-FSNYASACVPSLLEKFKEKKPNVVTALR--EAID 123
Query: 151 AAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI---GSGAVDGSGLKGLVSCL 207
A + L + + L ++ K+ + + + A++ LK L + L
Sbjct: 124 AIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 208 LGFLSSQDWAARKAAAEALWRLA-VVEKDAVPEFKGKCLKIFESKRFDKVKVVRE 261
+ L+ D R ++AEAL L ++ AV L + + K+K +E
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPL----LADVDPLKMAKIKECQE 232
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 32/235 (13%)
Query: 6 KTSVNGLLNKLSDRDTY--SQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKEC 63
K + + L L D ++ +A+ L + + S R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARVLQLRG---GQDAVRLAIEFC----SDKNYIRRDIG 74
Query: 64 IHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLK 123
++ + + I+N++ N DK++ ++AT I + + + +++
Sbjct: 75 AFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAIESTAQRCKK-NPIYSPKIVE 131
Query: 124 LLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGL 183
++ TN + A ++ D L L LLK
Sbjct: 132 QSQITA-FDKSTNVRRATAFAISV----INDKATIPL------LINLLKDPN-------G 173
Query: 184 VVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238
V + ++ + C + L ++ R A L +K +
Sbjct: 174 DVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--DKRVLS 226
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 9/192 (4%)
Query: 9 VNGLLNKL--SDRDTYSQAAKELDSIAATVDPTLLPT--FLSCILSTNSSDKPGVRKE-- 62
+ L KL + D + A E+ S F + K
Sbjct: 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQA 75
Query: 63 CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
H+ + S ++ PYI +++ +I N +K+ +Q+ T+ S+ V A +L
Sbjct: 76 VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL 135
Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL---KSEVFKAK 179
L++A+ ++ +A +DAA+D A ++ + L + K EV A
Sbjct: 136 PHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAA 195
Query: 180 AAGLVVVGSVIG 191
A + +
Sbjct: 196 TAAMTKATETVD 207
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Length = 257 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 1 MAHALKTSVNGLLNKLSDRDTYSQAA--KELDSIAATVDPTLLPTFLSCILSTNSSDKPG 58
+ V N+L ++ ++ L FL +LS
Sbjct: 9 KTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNME 68
Query: 59 VRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113
VRK+ + + + + +IN ++ RD ++ + I S+
Sbjct: 69 VRKQVVAFVEQVCKVK--VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNG 121
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 43/260 (16%)
Query: 12 LLNKLSDRDTYSQAAKELDSIA--------ATVDPTLLPTFLSCILSTNSSDKPGVRKEC 63
L + + ++A L +IA + +P F+ + SS+ V+++
Sbjct: 72 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL----SSEFEDVQEQA 127
Query: 64 IHVIATLS-NSHNLSPYITK--IINSITRNFRDKNS-ALQATCISTVSSLS----PRVGA 115
+ + ++ +S Y+ I+ + + F +N + + +S+L P
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187
Query: 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-----DAGKLGRMEVRLERL 170
+ L +LS L DT+ A L+ D D DAG R L L
Sbjct: 188 AKVSPCLNVLSW-LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRR----LVEL 242
Query: 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGL---KGLVSCLLGFLSSQDWAARKAAAEALW 227
L +K + L VG+ I +G + + + LL LSS + +K A +
Sbjct: 243 LMHNDYKVVSPALRAVGN-IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301
Query: 228 RLA---------VVEKDAVP 238
+ V++ + P
Sbjct: 302 NITAGNRAQIQTVIDANIFP 321
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 604 | |||
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.84 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.84 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.82 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.79 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.75 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.73 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.71 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.7 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.68 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.67 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.67 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.62 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.62 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.6 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.57 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.53 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.51 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.42 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.41 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.39 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.36 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.36 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.35 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.34 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.33 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.32 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.32 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.3 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.3 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.29 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.23 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.23 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.21 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.18 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.18 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.17 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.17 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.16 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.15 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.07 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.03 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.02 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.97 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.94 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.93 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.92 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.91 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.9 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.88 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.82 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.78 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.75 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.73 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.71 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.68 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.66 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.65 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.64 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.63 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.63 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.6 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.59 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.59 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.57 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.54 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.48 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.48 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.46 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.45 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 98.44 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.42 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.38 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.36 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.3 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.16 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.09 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.07 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.0 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.98 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 97.93 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.88 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.85 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 97.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.79 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.61 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 97.61 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.53 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.51 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.4 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 97.38 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.22 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 97.19 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.19 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 97.18 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.04 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 96.98 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 96.92 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.91 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 96.83 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.83 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.72 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.7 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.64 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.56 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 96.16 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.57 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 95.53 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 95.43 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 94.93 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 94.89 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 94.88 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 93.53 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 92.14 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 91.68 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 89.89 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 87.24 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 83.07 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 82.65 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 80.4 |
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=184.73 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=177.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhcc--
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNF-RDKNSALQATCISTVSSLSPRVGA-- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~d-- 115 (604)
+..|-..+.+...+.+|..|++++..|+.+++++ +..+++.++++.+.++| +|+++.||.+++.+++.|+..+..
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444445666666889999999999999999996 66778899999999999 599999999999999999988754
Q ss_pred chhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cC
Q 007424 116 SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG 193 (604)
Q Consensus 116 ~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag 193 (604)
.+++. ++++|++.| +++++.++.+|+.||.++++..+ +..+++.|...|++.+.++|..++..|+.++. .+
T Consensus 93 ~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 93 SNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 13333 888888888 78888999999999999999753 57899999999999999999999999999775 44
Q ss_pred -c-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHH
Q 007424 194 -A-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVRE 261 (604)
Q Consensus 194 -~-~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRd 261 (604)
. .+.+|++.+||.|..+|.+.+|.+|++|+++|+.|+..+| +.|.+|. .-|...|.+||+...+
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l----~~L~~~~~~~i~~~~~ 232 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL----ADVDPLKMAKIKECQE 232 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG----TTSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH----HhcCHHHHHHHHHHHH
Confidence 2 3459999999999999999999999999999999999999 5688884 4456677777766554
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=186.64 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=174.3
Q ss_pred hhcCCCCCCchhHHHHHHHHH-HHhhh--cc--cccHHHHHHHHHhhc-cCCChhHHHHHHHHHHhhhhhhc-c--c-hh
Q 007424 49 LSTNSSDKPGVRKECIHVIAT-LSNSH--NL--SPYITKIINSITRNF-RDKNSALQATCISTVSSLSPRVG-A--S-AF 118 (604)
Q Consensus 49 ~e~~ss~kp~~RKaaI~lLGv-Lae~h--~i--~p~L~kIl~~IvrrL-kDpDs~VR~Ac~~aLg~LAe~l~-d--~-~~ 118 (604)
.+..++.||..|++++..|+. +++++ +. ...+..++..+.+.| +|++..||.+|+.++|+|++.+. . . ++
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 344568899999999999999 99888 44 456678999999999 89999999999999999999986 3 3 44
Q ss_pred HH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc--
Q 007424 119 VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-- 194 (604)
Q Consensus 119 ~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-- 194 (604)
+. ++++|++.+ ++..+.|+..+..||+++++..+.... +|+..++++|+..|++++.++|.+++.+|++++...+
T Consensus 102 ~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 44 888888888 788889999999999999999765332 4599999999999999999999999999999997543
Q ss_pred --CcCCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHH
Q 007424 195 --VDGSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVM 263 (604)
Q Consensus 195 --~f~pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~ 263 (604)
.|.+|+ +.+||.|.+++.+++..+|.+|+++|+.|+.++| +.|.|| +.-|.. -|++.|++..
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~----l~~Ld~---~k~~ki~~~~ 246 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKT----LEHLDN---LKRKKIEETV 246 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHH----HHHSCH---HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHH----HHHHhH---HHHHHHHHHH
Confidence 256899 9999999999999999999999999999999999 579999 333433 3455555543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=202.08 Aligned_cols=248 Identities=16% Similarity=0.173 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
.++.|++.|+.++..++.+.++.+++.|.+...+++|.+|++++.+||.+++++ .+.||++.+++.+++.|+|+++.|
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 378999999999999986668999999998888889999999999999999988 777999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 99 QATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
|.+|++++|.+++++.... +..+++.|+..| .+.++.++..|+.||..+++..++.+.+|++.|++.|.++|+..
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999999999875422 223667777776 57789999999999999999988888899999999999999877
Q ss_pred chhHHHHHHHHHHHHHh-cCcCcC--CchHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhH----H
Q 007424 175 VFKAKAAGLVVVGSVIG-SGAVDG--SGLKGLVSCLLG---FLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGK----C 244 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~-ag~~f~--pyf~~lm~~L~e---~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~----~ 244 (604)
..+....++.+|+.++. +|..+. +|++.+||.|.+ .+.+++..+| .++++|+.++..+|+.|.||... |
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~ 574 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRC 574 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 76777778999999996 555553 699999999985 4456677776 79999999999999999988766 5
Q ss_pred HHHHHhc------------cCcc-hhHHHHHHHHHHHHH
Q 007424 245 LKIFESK------------RFDK-VKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~c------------RfDK-vK~VRda~~~AL~~w 270 (604)
++.|+.+ .++. -+.+|..+..+|...
T Consensus 575 ~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l 613 (852)
T 4fdd_A 575 VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGL 613 (852)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHH
Confidence 5577665 3321 345777777777655
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=189.66 Aligned_cols=249 Identities=10% Similarity=0.099 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
.++.|.+.|+.++..++...++.+++.+.+...+.+|..|++++.+||.+++++ .+.+|++.|++.+++.++|+++.
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 677899999999999986668999999998888889999999999999999875 57899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcc----ch-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC----CCChhhHHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGA----SA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ----DPDAGKLGRMEVRLE 168 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d----~~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~----d~i~~yL~~L~~RL~ 168 (604)
||.++++++|++++++.. .+ +..++++|+..| .+. +.++..||.+|..+++..+ +.+.+|++.+++.|+
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~ 504 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 999999999999999753 11 333788888887 444 8899999999999999875 445699999999999
Q ss_pred HHhcCC--chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC---------------CcHHHHHHHHHHHHHHH
Q 007424 169 RLLKSE--VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS---------------QDWAARKAAAEALWRLA 230 (604)
Q Consensus 169 klL~s~--~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s---------------~Dw~lRkaAaDaLg~LA 230 (604)
++|++. +..+|.+++.+++.++. .+..+.||+..++|.+.+.|.. ....+|..++++|+.++
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999854 36899999999999997 5555669999998888888752 24678999999999999
Q ss_pred HHcCcchhhhhhHHHHHHHhccCcchh-HHHHHHHHHHHHHH
Q 007424 231 VVEKDAVPEFKGKCLKIFESKRFDKVK-VVREVMNKMIEAWK 271 (604)
Q Consensus 231 ~~~ge~f~py~~~~i~~Le~cRfDKvK-~VRda~~~AL~~wK 271 (604)
...|+.+.||...++..|-..=-+.-. .||+.+..++..+-
T Consensus 585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~ 626 (861)
T 2bpt_A 585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALA 626 (861)
T ss_dssp HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHH
Confidence 999988888876665543322112223 78999888887664
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=181.50 Aligned_cols=249 Identities=11% Similarity=0.085 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
.++.|+..|..++..++...++.+++.+.+...+++|.+|.+++.+||.+++++ .+.+|++.++|.+++.|+|+++.
T Consensus 344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 778999999999999985558999999988888889999999999999999876 46789999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccc----h-hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--------------CCChh
Q 007424 98 LQATCISTVSSLSPRVGAS----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--------------DPDAG 158 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~----~-~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~--------------d~i~~ 158 (604)
||.+|++++|++++++... + +..+++.|+..| .+ ++.++..|+.||..+++.+. +.+.+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~ 501 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH
Confidence 9999999999999997531 2 223666666666 34 47899999999999998854 34678
Q ss_pred hHHHHHHHHHHHhcCC---chhHHHH------------------------------------------------------
Q 007424 159 KLGRMEVRLERLLKSE---VFKAKAA------------------------------------------------------ 181 (604)
Q Consensus 159 yL~~L~~RL~klL~s~---~~kaK~a------------------------------------------------------ 181 (604)
|++.+++.|++++... ...++..
T Consensus 502 ~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~ 581 (876)
T 1qgr_A 502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQ 581 (876)
T ss_dssp THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Confidence 9999999999998754 1233333
Q ss_pred --HHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcc
Q 007424 182 --GLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQD--WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK 255 (604)
Q Consensus 182 --lLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~D--w~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDK 255 (604)
++.+++.++. .| ..+.||++.+++.|...|.+.. |.+|..|+.+|+.|+...|+.|.||...++..|-.+=-|.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 3444444443 34 4556889899999999887664 6899999999999999999889999888877765554344
Q ss_pred -hhHHHHHHHHHHHHHH
Q 007424 256 -VKVVREVMNKMIEAWK 271 (604)
Q Consensus 256 -vK~VRda~~~AL~~wK 271 (604)
...||.++..+|..+-
T Consensus 662 ~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 6789999888877663
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=192.02 Aligned_cols=264 Identities=14% Similarity=0.161 Sum_probs=214.1
Q ss_pred HHHHHHhhhcC--ChhHHHHHHHHHHHHHhh----cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccH
Q 007424 7 TSVNGLLNKLS--DRDTYSQAAKELDSIAAT----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (604)
Q Consensus 7 ~rvl~~L~KLs--DrDT~r~A~~eLD~lA~~----L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L 80 (604)
+.+.+.|.++. |.|.++.|+..|....+. +++.....++..|.+...++++.+|++|+++|+.+++... .+++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHHH
Confidence 45677888884 667899999888775542 3334455666666666667889999999999999998661 1789
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---------hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---------~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~ 151 (604)
+.|++.++..|.|++..||.+|+.+++.++..+... ....+++.|+..|.+..+..++.+|..+|..+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988532 12338888888883246778999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHH
Q 007424 152 AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRL 229 (604)
Q Consensus 152 a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~f~pyf~~lm~~L~e~L~s~-Dw~lRkaAaDaLg~L 229 (604)
.+..+.+|++.+++.|+..|.+++..+|.+++.++++++.. +..+ |+.+|+.|.++|.++ ++.+|..|+++|+.|
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999998863 3333 556777787777644 468999999999999
Q ss_pred HHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 230 AVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 230 A~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+..+|+.|.||...++..|-..=-|.-..||+++.+++..|-..-
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 999999899998888887766655888999999999999987654
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-16 Score=173.90 Aligned_cols=259 Identities=13% Similarity=0.137 Sum_probs=208.3
Q ss_pred HhhhcCChh--HHHHHHHHHHHHHhhcC-----CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------cccc
Q 007424 12 LLNKLSDRD--TYSQAAKELDSIAATVD-----PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSP 78 (604)
Q Consensus 12 ~L~KLsDrD--T~r~A~~eLD~lA~~L~-----pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------~i~p 78 (604)
.+..|.|.+ -+..|+..|-.++..++ ...++.+++.|.+...+. +.+|.++..+|+.+++.+ .+.|
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 344455554 45667778888887763 334777777777766554 889999999999998763 5789
Q ss_pred cHHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccc--h-hHHHHHHHHHHHcc--------------CCChhHHH
Q 007424 79 YITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGAS--A-FVTMLKLLSDALFT--------------EQDTNAQV 139 (604)
Q Consensus 79 ~L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~--~-~~sllkPL~eaL~~--------------eqdk~vQ~ 139 (604)
|++.|++.+++.|.+ ++..||.+++++++.++....+. + +..+++++++.|.. +....++.
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 999999999999985 44789999999999999987542 2 22377788877742 11345778
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHH
Q 007424 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF-KAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~-kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~ 217 (604)
.++.||..+++..+..+.+|++.+++.+..+|++.+. .++..++.+++.++. .|..|.||++.++|.|..+|.++++.
T Consensus 575 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 9999999999999888889999999999999998876 889999999999996 56678899999999999999989999
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcch--hHHHHHHHHHHHHHH
Q 007424 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKV--KVVREVMNKMIEAWK 271 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKv--K~VRda~~~AL~~wK 271 (604)
+|..|+.+|+.|+...|+.|.||...++..|-.+--|.- ..||.++..++..+-
T Consensus 655 vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 999999999999999999999999888877654432322 679999888887653
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=167.11 Aligned_cols=258 Identities=15% Similarity=0.118 Sum_probs=185.3
Q ss_pred HHHHHhhhc-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--ccc--cc
Q 007424 8 SVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS--PY 79 (604)
Q Consensus 8 rvl~~L~KL-sDrD--T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~--p~ 79 (604)
.++..|.++ .|.+ .++.|++.|..++..++++. .+.+++.+.....++++.+|++++.+||.++... ... ++
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 344444443 3443 56777777777777665432 1223333333333456677888888887777655 111 56
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
++.++|.+.+.++|+++.||.+++++++.++..+.+......+.|++..++.+.++.++..|+.+|..+++..+. ..+
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~ 399 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL 399 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHH
Confidence 778888888888888888888888888888777643222234455555555778889999999999999987643 235
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh
Q 007424 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (604)
Q Consensus 160 L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~ 238 (604)
.+.++|.|.+++++++..++.+++.+++.++. .|..+ +.+.++|.+...|.+++|.+|.+|+.+|+.++...|+.+
T Consensus 400 ~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~- 476 (588)
T 1b3u_A 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW- 476 (588)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh-
Confidence 67899999999999999999999999999986 45443 335689999999999999999999999999999888532
Q ss_pred hhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 239 EFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 239 py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+...++..|..+-.|.-..||.++..++..+-
T Consensus 477 -~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 477 -AHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp -HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34566777777777888899999999888764
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=181.71 Aligned_cols=257 Identities=14% Similarity=0.184 Sum_probs=210.6
Q ss_pred hhhcCChh--HHHHHHHHHHHHHhhcCCC---------ChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--cccc
Q 007424 13 LNKLSDRD--TYSQAAKELDSIAATVDPT---------LLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSP 78 (604)
Q Consensus 13 L~KLsDrD--T~r~A~~eLD~lA~~L~pe---------~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~i~p 78 (604)
+..|.|.+ .+..|+..|..++..++++ ..+.+++.|.+... ++++.+|.+++.+|+.+++.. .+.|
T Consensus 92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~ 171 (1230)
T 1u6g_C 92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN 171 (1230)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH
Confidence 33344444 5678899999999999876 25566666655544 567899999999999999866 7889
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
|++.+++.+...|.|+++.||.+++.+++.++....+.-+..+++.|+..|..+.+..+...|+.|+..+++..+....+
T Consensus 172 ~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 251 (1230)
T 1u6g_C 172 FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251 (1230)
T ss_dssp THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999987543334478888888865544456678899999999998877789
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC------------------------
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS------------------------ 213 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s------------------------ 213 (604)
|++.+++-+++.+.+++..+|.+++.+++.++. .+..+.||++.++|.+..++..
T Consensus 252 ~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~ 331 (1230)
T 1u6g_C 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD 331 (1230)
T ss_dssp SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccc
Confidence 999999999999998888899999999999997 4566779999999999887741
Q ss_pred -------------CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 214 -------------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 214 -------------~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
..|.+|++|+++|+.++...++.|.+|...++..|-.+=.|....||.++.++|..
T Consensus 332 ~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 332 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp -------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred hhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 13889999999999999988888999999999998877669999999988888753
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=171.67 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhhcCC---CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC
Q 007424 21 TYSQAAKELDSIAATVDP---TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~p---e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD 95 (604)
.+..|++.|..++...+. ..++.++..|.....++++.+|+.++.+|+.+++.+ ++.||++.+++.+.+.++|++
T Consensus 190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc
Confidence 556677777666554332 225677777777777778899999999999999988 889999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhhc--c--chhH-HHHHHHHHHHc----------cC-----------CChhHHHHHHHHHHHHH
Q 007424 96 SALQATCISTVSSLSPRVG--A--SAFV-TMLKLLSDALF----------TE-----------QDTNAQVGAALCLAATI 149 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~--d--~~~~-sllkPL~eaL~----------~e-----------qdk~vQ~~AA~cLaalI 149 (604)
..||..|++.+..+++... + .+.. .+++.|+..|. ++ .+..+..+|+.||+.+.
T Consensus 270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 9999999999999987521 1 2222 25666665551 22 23457889999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
+..++ ..++.+++.+.++|.+++.++|.+++.++|+++... ..+.||++.+++.|...|.++++.+|.+|+.+|+.
T Consensus 350 ~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 350 NVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp HHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 98764 567889999999999999999999999999988633 44459999999999999999999999999999999
Q ss_pred HHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 229 LAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 229 LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
++...+ +...+|...++..|-.+=-|..+.||+++..||..+-+
T Consensus 427 l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 999765 45566666666666655558889999999999987754
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=163.07 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=194.5
Q ss_pred HHHHHHHHHhhhc-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhccccc
Q 007424 4 ALKTSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (604)
Q Consensus 4 eLk~rvl~~L~KL-sDrD--T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~ 79 (604)
..+..++..|.++ .|.| .++.|++.|..++..++++. ++.+++.|.....++++.+|+.++.+|+.++...--..+
T Consensus 160 ~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 239 (588)
T 1b3u_A 160 AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239 (588)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3455566666555 3444 68899999999999887643 344455554444566789999999999999876511235
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA- 157 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~- 157 (604)
.+.++|.+.+.+.|++..||.+++.++|.++..+....+.. +++.++..| .+.++.++.+|+.+|..+++..+....
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 67788999999999999999999999999998763222222 555555555 788899999999999999998876543
Q ss_pred -hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007424 158 -GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (604)
Q Consensus 158 -~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g- 234 (604)
.+++.++|.+.+++++++..+|.+++.+++.++. .|... +.+.++|.+..+|.++++.+|.+|+.+|+.+....|
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 396 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH
Confidence 5788899999999999999999999888888775 34321 234577888888888889999999999998888776
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
+.+ ...++..|..+-.|+--.||.++.++|..+-.
T Consensus 397 ~~~---~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 397 RQL---SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 222 22333444344447778889888888887743
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-14 Score=157.12 Aligned_cols=254 Identities=10% Similarity=0.089 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhhcC----CCChHHHHHhhhhcCCCCC--CchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccC
Q 007424 22 YSQAAKELDSIAATVD----PTLLPTFLSCILSTNSSDK--PGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~----pe~ip~fL~~L~e~~ss~k--p~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkD 93 (604)
...++..|..++..++ ...++.+++.|.....+.. +.+|..++.+++.++... .+.||++.+++.+++.|.|
T Consensus 581 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 4567788888988777 2235556666655544442 578999999999998866 6789999999999999999
Q ss_pred C-ChhHHHHHHHHHHhhhhhhcc--ch-hHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 007424 94 K-NSALQATCISTVSSLSPRVGA--SA-FVTMLKLLSDALFT-EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (604)
Q Consensus 94 p-Ds~VR~Ac~~aLg~LAe~l~d--~~-~~sllkPL~eaL~~-eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~ 168 (604)
+ +..||.+++.++|.|+..+.. .+ ...+++.|+..|.. +.+..++..++.|+..++...++...+|++.+++.|.
T Consensus 661 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~ 740 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQ 740 (876)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 8 789999999999999987753 12 22367777777743 2456788999999999999888777889999999999
Q ss_pred HHhcCCc-----------hhHHHHHHHHHHHHHhc-C----------cCcCCchHHHHHHHHhhhcCC--cHHHHHHHHH
Q 007424 169 RLLKSEV-----------FKAKAAGLVVVGSVIGS-G----------AVDGSGLKGLVSCLLGFLSSQ--DWAARKAAAE 224 (604)
Q Consensus 169 klL~s~~-----------~kaK~alLsaIGSiA~a-g----------~~f~pyf~~lm~~L~e~L~s~--Dw~lRkaAaD 224 (604)
+.++.+. ..+|..++.+++.++.. + ..+.||++.+++.|...+.++ +..+|++|+.
T Consensus 741 ~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~ 820 (876)
T 1qgr_A 741 QASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAG 820 (876)
T ss_dssp HHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHH
T ss_pred HHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9997552 26788888888887753 3 234589988888887776666 6799999999
Q ss_pred HHHHHHHHcCc-chhhh-hhHHHHHHHh-ccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 225 ALWRLAVVEKD-AVPEF-KGKCLKIFES-KRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 225 aLg~LA~~~ge-~f~py-~~~~i~~Le~-cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
+||.|+...|. .+.+| ...++..|=. +.-|+-..||.+|..|++.++++..
T Consensus 821 ~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 821 LIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhc
Confidence 99999999987 88888 5565654444 7678889999999999999988763
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=149.98 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=195.0
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCC-ChHHHHHhhhhcCCCC--CCchhHHHHHHHHHHHhhh---ccc
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPT-LLPTFLSCILSTNSSD--KPGVRKECIHVIATLSNSH---NLS 77 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe-~ip~fL~~L~e~~ss~--kp~~RKaaI~lLGvLae~h---~i~ 77 (604)
.+|+.++..|.. .+... +.+...|-.||...-|+ ..|-+++.|.+...++ ++.+|..++.+|+.+++.. .+.
T Consensus 90 ~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 90 EVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 466666666644 23335 77888888888875332 4444444444444445 6789999999999999854 678
Q ss_pred ccHHHHHHHHHhhccCC--ChhHHHHHHHHHHhhhhhhccc----hhHHH-HHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 78 PYITKIINSITRNFRDK--NSALQATCISTVSSLSPRVGAS----AFVTM-LKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 78 p~L~kIl~~IvrrLkDp--Ds~VR~Ac~~aLg~LAe~l~d~----~~~sl-lkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
+|++.|++.+.+.|+|+ ++.||.+++++++.+.+++.+. .+..+ ++.|.. +..+.+..+...++.||..+++
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 6899999999999987665321 12233 444444 4467788899999999999999
Q ss_pred hcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC------------------cC---c-CCchHHHHHHH
Q 007424 151 AAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG------------------AV---D-GSGLKGLVSCL 207 (604)
Q Consensus 151 ~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag------------------~~---f-~pyf~~lm~~L 207 (604)
..++...+|++ .+++-++..+++.+..++..++..++.++... .. + .+|+..++|.|
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 88776778888 89999999998888888988998888877531 01 1 24667888988
Q ss_pred HhhhcC-------CcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 208 LGFLSS-------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 208 ~e~L~s-------~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+.|.+ ++|.+|.+|+++|+.++...|+.+.+ .++..+..+=-|.--.||+++..+|..+-
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 888853 46999999999999999998853332 23444443334788899999999998774
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=168.43 Aligned_cols=246 Identities=9% Similarity=0.101 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC------CCCCchhHHHHHHHHHHHhhh-----cccc-----cHHHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS------SDKPGVRKECIHVIATLSNSH-----NLSP-----YITKII 84 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s------s~kp~~RKaaI~lLGvLae~h-----~i~p-----~L~kIl 84 (604)
.+++|.+.|+.++..++...+++++..+.+... +.+|..|.+|+++||.++++. .+.+ .+..++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 677888899999999984337888888765544 678899999999999998742 1222 566653
Q ss_pred -HHHHhhccCC---ChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-------
Q 007424 85 -NSITRNFRDK---NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ------- 153 (604)
Q Consensus 85 -~~IvrrLkDp---Ds~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~------- 153 (604)
..|+..|+|+ .+.||.+|++++|++++++...-...+++.|+..| .+.++.|+..||+||..+++...
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 4678888998 88999999999999999973211122555555555 46678899999999999998532
Q ss_pred ----CCChhhHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc-----CCcHHH
Q 007424 154 ----DPDAGKLGRMEVRLERLLKSEV-----FKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS-----SQDWAA 218 (604)
Q Consensus 154 ----d~i~~yL~~L~~RL~klL~s~~-----~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~-----s~Dw~l 218 (604)
+.+.+|++.|+++|+++|+..+ ......++.+|++++. .++.+.||+..+|+.|...|. .++...
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 3357999999999999998751 2234689999999996 567788999999999998884 357888
Q ss_pred HHHHHHHHHHHHHHcC-cchhhhhhHHHHH----HHhccCcchhHHHHHHHHHHHHHH
Q 007424 219 RKAAAEALWRLAVVEK-DAVPEFKGKCLKI----FESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 219 RkaAaDaLg~LA~~~g-e~f~py~~~~i~~----Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+..++++|+.|+...+ +.+.+|...++.+ |+.+-.| +++.+.+.+..+-
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~----~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE----FIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT----THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHh----hHHHHHHHHHHHH
Confidence 8889999999999865 6777777666654 4443333 4444455544443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=140.74 Aligned_cols=228 Identities=11% Similarity=0.151 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHhhc----CCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHHHHHHhh
Q 007424 19 RDTYSQAAKELDSIAATV----DPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRN 90 (604)
Q Consensus 19 rDT~r~A~~eLD~lA~~L----~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl~~Ivrr 90 (604)
.+-+..|++.|-.++..+ +...+ ..++..|.+...++++.+|+.++.+|+.+++.+ .+.+|++ .+++.++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777776654322 22222 335777777777788899999999999999988 7889999 999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhc-----------------c--chh-----HHHHHHHHHHHcc------CCChhHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVG-----------------A--SAF-----VTMLKLLSDALFT------EQDTNAQVG 140 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~-----------------d--~~~-----~sllkPL~eaL~~------eqdk~vQ~~ 140 (604)
++|.+..||..|++.++.+++... . ..+ ..+++.|+..|.. +.+..+..+
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 999999999999999999988641 0 001 2255555555532 224578899
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--cCcCCchHHHHHHHHhhhcCCcHHH
Q 007424 141 AALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG--AVDGSGLKGLVSCLLGFLSSQDWAA 218 (604)
Q Consensus 141 AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag--~~f~pyf~~lm~~L~e~L~s~Dw~l 218 (604)
|+.||..+++..++ ..++.+++.+...|++++.++|.+++.++|+++... ..+.++++.++|.|...|.++++.+
T Consensus 348 a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~V 424 (462)
T 1ibr_B 348 AGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424 (462)
T ss_dssp HHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99999999999874 678889999999999999999999999999988522 2345889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcch--hhhhhHHHHHHH
Q 007424 219 RKAAAEALWRLAVVEKDAV--PEFKGKCLKIFE 249 (604)
Q Consensus 219 RkaAaDaLg~LA~~~ge~f--~py~~~~i~~Le 249 (604)
|.+|+.+|+.++...++.+ .+|...++..|-
T Consensus 425 r~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 9999999999999887544 578777777664
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=159.90 Aligned_cols=244 Identities=13% Similarity=0.069 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-----CCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhcc-
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-----DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR- 92 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss-----~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLk- 92 (604)
.++.+.+.|+.++..++.+.++.++..|.+...+ .+|..|++++.+||.+++++ ...++|++|++ ++-.|.
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~ 515 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCc
Confidence 3456677788888877744478888887766543 68999999999999999998 66799999999 555555
Q ss_pred -CCChhHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 93 -DKNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 93 -DpDs~VR~Ac~~aLg~LAe~l~d~~--~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
|+.+.||.++++++|++++++.+.+ ...+++-|+..| + +.++..||.|+..+++.....+.+|++.|+..+.+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 6799999999999999999996533 112445555555 2 77999999999999999887788999999999999
Q ss_pred HhcCC--chhHHHHHHHHHHHHHhc-C-cCcCCchHHHHHHHHhhhc----CC--cHHHHHHHHHHHHHHHHH---cC--
Q 007424 170 LLKSE--VFKAKAAGLVVVGSVIGS-G-AVDGSGLKGLVSCLLGFLS----SQ--DWAARKAAAEALWRLAVV---EK-- 234 (604)
Q Consensus 170 lL~s~--~~kaK~alLsaIGSiA~a-g-~~f~pyf~~lm~~L~e~L~----s~--Dw~lRkaAaDaLg~LA~~---~g-- 234 (604)
+++.+ +...+..++++||.++.+ + ....||+..+++.+.+.|. .. +-..+..++++|+.|+.+ ++
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 99985 567899999999999974 3 3445888887777766553 22 333566666666666653 32
Q ss_pred -----------cchhhhhhHHHHHHHhc--cCcchhHHHHHHHHHHHH
Q 007424 235 -----------DAVPEFKGKCLKIFESK--RFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 235 -----------e~f~py~~~~i~~Le~c--RfDKvK~VRda~~~AL~~ 269 (604)
+.+.+|...++.++... .+.+-..|.+.+..++..
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 24666776676655543 244445777777766665
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=155.42 Aligned_cols=243 Identities=13% Similarity=0.055 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcC----CCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTN----SSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~----ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD 95 (604)
++.+.+.|+.++..++.+.++.++..+.+.. .+.+|..|.+++.+||.++++. ...++|+.|++.+ -.|.++.
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~ 502 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCc
Confidence 4566677888887777555788888776655 6678999999999999999998 6678999999955 4677778
Q ss_pred hhHHHHHHHHHHhhhhhhccchhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcC
Q 007424 96 SALQATCISTVSSLSPRVGASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s 173 (604)
+.||.++++++|++++++.+.+.. .+++-|+..| + ++.++..||.||..+++.....+.+|++.|+..|.+++..
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-G--NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-T--CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 899999999999999998643311 1444555555 2 3789999999999999998888889999999999999986
Q ss_pred C--chhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcC-----CcH---HHHHHHHHHHHHHHHHcCcc-----
Q 007424 174 E--VFKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSS-----QDW---AARKAAAEALWRLAVVEKDA----- 236 (604)
Q Consensus 174 ~--~~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s-----~Dw---~lRkaAaDaLg~LA~~~ge~----- 236 (604)
+ ....+..++.+||.++. ++ ..+.||+..+|+.+.+.|.. .+- ..+..++++|+.++..++..
T Consensus 580 ~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 4 56789999999999997 44 45679999999988887741 233 34457788888888877631
Q ss_pred -----------------hhhhhhHHHHH----HHhccCcchhHHHHHHHHHHHHH
Q 007424 237 -----------------VPEFKGKCLKI----FESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 237 -----------------f~py~~~~i~~----Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.++...++++ |+..- .-..|++.+..++..+
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~v~e~~~~~l~~~ 712 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL--NDAQVVEAVCAIFEKS 712 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHH
Confidence 34444555544 44322 2237788777777665
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=121.71 Aligned_cols=189 Identities=20% Similarity=0.298 Sum_probs=145.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
+++.++.++..|. ++++.+|..++.+||.+.. +..++.+++.|.|+++.||.+++++||.+...
T Consensus 17 ~~~~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---- 80 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---- 80 (211)
T ss_dssp CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----
T ss_pred CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence 5556888888875 4578999999999998754 35567788899999999999999999999754
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
..+++|+..| .+.++.++..|+.+|..+.+ +..++.|.++|++++..++.+++.++|.+ +.
T Consensus 81 ---~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-- 141 (211)
T 3ltm_A 81 ---RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI---GD-- 141 (211)
T ss_dssp ---GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC--
T ss_pred ---HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC--
Confidence 3577777777 77889999999999987743 23456778899999999999999888865 22
Q ss_pred CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 197 GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 197 ~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+..++.|.++|.++++.+|..|+.+|+.+.. + .....+.+.|+ |.-..||.++.+||..++.-+
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---RVRAAMEKLAE----TGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---HHHHHHHHHHH----HCCHHHHHHHHHHHHC-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCC
Confidence 2467888899999999999999999999843 1 12223344444 888999999999988775433
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-12 Score=121.81 Aligned_cols=191 Identities=10% Similarity=0.076 Sum_probs=160.2
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+.+|-+.+.+.+.|.+..+|.+++.+|..+.+...+ ..+..++.-|...|..+.+..+..+|+.||..++..++...
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 444556788899999999999999999999886322 22334666666666237888999999999999999988777
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-c
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-D 235 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e 235 (604)
.+|+..++|.|++.|.+++..++.++..++..++... .++.+++.|...|.+.+|.+|..++..|+.++...+ +
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999887532 367899999999999999999999999999887765 3
Q ss_pred -chhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCC
Q 007424 236 -AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPD 275 (604)
Q Consensus 236 -~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~ 275 (604)
.+.+|...++..|-.|=-|..+.||+++.++|..+-..-+
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 6778888888888888889999999999999988755443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.9e-12 Score=117.26 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=141.2
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHH
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM 121 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sl 121 (604)
+.....+.+...++++.+|..++.+||.+.. +..++.+++.|.|+++.||.+++++|+.+... ..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-------~~ 77 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------RA 77 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------HH
Confidence 3334444444557788999999999998764 24467778889999999999999999998654 35
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchH
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK 201 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~ 201 (604)
+++|...| .+.++.++..|+.+|..+.+ +..++.|.++|++++..++.+++.++|.+. . +
T Consensus 78 ~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~------~ 137 (201)
T 3ltj_A 78 VEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---D------E 137 (201)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---C------G
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C------H
Confidence 77777777 67888999999999987643 234566778889999999999888888652 1 2
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 202 ~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..++.|.++|.++++.+|..|+.+|+.+.. +. ....+.+.|+ |.-..||.++.+||..++.
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---VRAAMEKLAE----TGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---HHHHHHHHHH----HCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---HHHHHHHHHh----CCCHHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999832 11 2223344454 7789999999999887653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=127.47 Aligned_cols=249 Identities=11% Similarity=0.127 Sum_probs=182.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCC--------ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATVDPT--------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINS 86 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe--------~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~ 86 (604)
+.+.++.|+..|-.|+..-.+. .+|.++..+. +.++.+|..++.+|+.++... .....+ ..+++.
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 238 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHH
Confidence 4557888999999998765221 2566665554 556789999999999998754 111111 347788
Q ss_pred HHhhccCCChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-H
Q 007424 87 ITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-G 161 (604)
Q Consensus 87 IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~ 161 (604)
+++.|++++..||.+|+++|+.|+....+.. .. .++++|+..| .+.++.++..|+.||..+..+..+.....+ .
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 317 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDA 317 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 8899999999999999999999997643211 11 2777777777 567889999999999999874322222223 2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc---
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--- 235 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~-~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge--- 235 (604)
.+++.|+.+|++++..+|..++.+|+.++..+. ....++ ..+++.|.+.|.+.++.+|..|+++|+.|+.....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 397 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Confidence 578889999999999999999999998886431 212222 24789999999999999999999999999985432
Q ss_pred ----chhhhhhHH-----HHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 236 ----AVPEFKGKC-----LKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 236 ----~f~py~~~~-----i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+.+|...+ ++.|+....+.-..||+.+..+|..+=
T Consensus 398 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 398 RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 234565554 566777778888899999999998764
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=132.53 Aligned_cols=249 Identities=14% Similarity=0.146 Sum_probs=184.9
Q ss_pred CChhHHHHHHHHHHHHHhhc-CCC-------ChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHHH
Q 007424 17 SDRDTYSQAAKELDSIAATV-DPT-------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L-~pe-------~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl~ 85 (604)
.|.+..+.|+..|-.|+..- +.. .+|.|+..| .+.++.+|..++.+|+.|+... .+...+. .+++
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI----YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT----TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH----cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 45667888999999998765 221 245555555 4556899999999999998764 2222222 6788
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.++..|.+++..||.+|+++|+.|+..-... .+. .++++|+..| .+.++.++..|+.||..+.....+....++
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999998653221 111 2778888877 566888999999999999875332222222
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~pyf~~--lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge 235 (604)
..+++.|+.+|.++++.++..++.+|+.++..+.. ...++-. +++.|...|.+.+..+|..|+++|..|......
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 24788899999989999999999999998875432 2233322 789999999999999999999999999885431
Q ss_pred -------chhhhhh-----HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 236 -------AVPEFKG-----KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 236 -------~f~py~~-----~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.+.+|.. .+++.|+....|.-..|++.+..+|..+
T Consensus 462 ~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 462 DKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred hhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2234432 3578899999999999999999998765
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-11 Score=125.43 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=180.7
Q ss_pred CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L--------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~ 85 (604)
.|.+.+..|+..|-.|+..- ....++.|+.++.+ +.++.+|+.++.+|+.++... .-...+..++|
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 195 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 35567888999998888753 23458888888863 346789999999999999653 22334578889
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hh--HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AF--VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~--~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|+++|..||..++++|+.|+....+. .+ ..++++|+..| .+.++.++..|+.||..+....++.....+
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 9999999999999999999999999864221 11 12788888887 577888999999999999875322111112
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc-CCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cch
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV 237 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f 237 (604)
..+++.|.++|++++..++..++.+|+.++...... ...+ ..++|.|.+.|.+++..+|+.|+.+|+.|+.... +.+
T Consensus 275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 148899999999999999999999999877421111 1122 2578888888888999999999999999987532 322
Q ss_pred hhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 238 PEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 238 ~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
..+. ..++..|-..=-|+-..||..+..||..+-.
T Consensus 355 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 355 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2221 1233333322226678899999999986643
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=131.54 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=185.3
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH-HHHHHHHHhh
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRN 90 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L-~kIl~~Ivrr 90 (604)
.|.+..+.|+..|-.|+..-+... +..+++.|.....+.++.++..++.+|+.++.+. .+...+ ..+++.+++.
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l 294 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence 355678888899988888754322 1223334444445667899999999999998765 211111 2478899999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccch--h--HHHHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCChhhH-HHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASA--F--VTMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKL-GRME 164 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~--~--~sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~ 164 (604)
|.++++.|+..|+.+|+.|+....... . ..++++|+..|. +. ++.++..|+.+|..+.....+.....+ ..++
T Consensus 295 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 295 LLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT-QNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred HcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 999999999999999999997542211 1 126888888884 55 889999999999999874222111112 2478
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc------
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD------ 235 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge------ 235 (604)
|.|+++|.+.+..++..++.+|+.++..+ .....|+ ..+++.|.+.|.+.|+.+|..|+++|+.|......
T Consensus 374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 89999999999999999999999998764 3333444 34789999999999999999999999999875532
Q ss_pred -chhhhh-----hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 236 -AVPEFK-----GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 236 -~f~py~-----~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...+|. ...++.|+....+.-..|++.+...|+.+
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 122232 23477888888889999999999999866
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-11 Score=119.08 Aligned_cols=215 Identities=12% Similarity=0.083 Sum_probs=154.5
Q ss_pred hcCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHH-hhc
Q 007424 15 KLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSIT-RNF 91 (604)
Q Consensus 15 KLsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~Iv-rrL 91 (604)
-|.|.| .+..|+..|-.+. +++.++.++.++. ++++.+|..++.+||.+.... ..++.+++.+. ..+
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~~---~~~~~l~~~L~~~~~ 100 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICK---KCEDNVFNILNNMAL 100 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCT---TTHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHccC---CchHHHHHHHHHc----CCCHHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHh
Confidence 344444 5667777776664 3444788777765 456789999999998875322 34566777777 367
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
+|+++.||.+++++||.+...... ....++++|...| .+.++.++..|+.+|..+.+ +..++.|.++|
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~-~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l 168 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITA-FDKSTNVRRATAFAISVIND----------KATIPLLINLL 168 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHH
Confidence 899999999999999999854310 0113677777777 67888999999999876643 12566778889
Q ss_pred cCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhc
Q 007424 172 KSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (604)
Q Consensus 172 ~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~c 251 (604)
++++..++..++.++|.+ +. .-+.+++.|...|.++++.+|..|+.+|+.+.. .+.+ ...++.|+.
T Consensus 169 ~d~~~~vr~~a~~aL~~~---~~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--~~~~----~~L~~~l~d- 234 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININ---KY----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--KRVL----SVLCDELKK- 234 (280)
T ss_dssp TCSSHHHHHHHHHHHHHH---TC----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--GGGH----HHHHHHHTS-
T ss_pred cCCCHHHHHHHHHHHHhh---cc----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--HhhH----HHHHHHhcC-
Confidence 999999999988888865 21 124678889999999999999999999998762 1222 334666653
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
..||..+.+||..+
T Consensus 235 -----~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 235 -----NTVYDDIIEAAGEL 248 (280)
T ss_dssp -----SSCCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHhc
Confidence 23898888888766
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-11 Score=118.07 Aligned_cols=198 Identities=8% Similarity=0.036 Sum_probs=164.7
Q ss_pred ccccHHHHHHHHHhhccCCChhHHHHHHHHHHh-hhhhhcc-----chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007424 76 LSPYITKIINSITRNFRDKNSALQATCISTVSS-LSPRVGA-----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149 (604)
Q Consensus 76 i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~-LAe~l~d-----~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalI 149 (604)
|.+.||+ -....|.+++..-|.+++.+|+. +.+...+ ..+..++.-|...|-.+.+..+...|+.||..+.
T Consensus 13 i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la 89 (249)
T 2qk1_A 13 ILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC 89 (249)
T ss_dssp CGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3445554 55677899999999999999999 8764322 2334477777777745888889999999999999
Q ss_pred hhcC-CCCh-hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcC-CchHHHHHHHHhhhcCCcHHHHHHHHHH
Q 007424 150 DAAQ-DPDA-GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDG-SGLKGLVSCLLGFLSSQDWAARKAAAEA 225 (604)
Q Consensus 150 E~a~-d~i~-~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~-pyf~~lm~~L~e~L~s~Dw~lRkaAaDa 225 (604)
+++. +... +|...++|.++..|++....++.++..|+-+++. ...... +|++.+|+.|.++|.+..|++|..++.+
T Consensus 90 ~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 90 DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 9998 7887 9999999999999999888898888888888886 433333 5699999999999999999999999999
Q ss_pred HHHHHHHcC---cchhhhh-hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 226 LWRLAVVEK---DAVPEFK-GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 226 Lg~LA~~~g---e~f~py~-~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
|+.++...+ +.|.+|. ..++..|..|=-|.-+.||+++.++|..+-.+-|.
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 999999887 4577887 88888888888899999999999999998766554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-11 Score=130.04 Aligned_cols=251 Identities=14% Similarity=0.134 Sum_probs=182.0
Q ss_pred CChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~ 85 (604)
.|.+.+..|+..|-.|+.. +....+++|+.+|.+ .++.+|+.++.+|+.|+... .-......+++
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~ 260 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence 4666788888888888864 234458888888875 46789999999999999764 23345677899
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhcc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|.++|..||..++++|+.|+....+ ..+. .+++.|+..| .+.++.++..|+.+|..++...+......+
T Consensus 261 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999975322 1111 2677777777 567888999999999988864322111122
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc--c
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD--A 236 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge--~ 236 (604)
..+++.|+.+|.+++..++..++.+|+.++....... .++ ..+++.|...|.+.++.+|..|+.+|+.|+..... .
T Consensus 340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 419 (530)
T 1wa5_B 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 419 (530)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHH
Confidence 2488899999999999999999999998775322111 122 24678888888889999999999999999986432 1
Q ss_pred hhhh--hhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 237 VPEF--KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 237 f~py--~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
...+ ...++..|-..=-++...||..+..||..+=.
T Consensus 420 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 420 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 1111 12344444444447788999999999987643
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-11 Score=116.89 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=149.8
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
....++.++.+|. ++++.+|..++.+||.+.. +..++.+++.|+|+++.||.+|+++||.+...- .
T Consensus 21 ~~~~i~~L~~~L~----~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~ 86 (280)
T 1oyz_A 21 KKLNDDELFRLLD----DHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K 86 (280)
T ss_dssp HTSCHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T
T ss_pred HHhhHHHHHHHHH----cCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c
Confidence 3445888888875 4577999999999998863 567888899999999999999999999987431 1
Q ss_pred hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 117 ~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
....+++.|...+..+.++.++..|+.+|..+....+ .+.+.+++.|.++|++++..++.+++.++|.+ +.
T Consensus 87 ~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~---~~-- 157 (280)
T 1oyz_A 87 CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI---ND-- 157 (280)
T ss_dssp THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc---CC--
Confidence 1222444444445578899999999999999886432 34567889999999999999998888888743 22
Q ss_pred CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 197 GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 197 ~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
+..++.|.+.|.++++.+|..|+.+|+.+.... .......++.|+ |.-..||..+..+|..+.
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDN----SDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----HHHHHHHHHHTT----CSCHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc----HHHHHHHHHHhc----CCCHHHHHHHHHHHHHhC
Confidence 135788888899999999999999999874211 112223344554 888999999999987663
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-11 Score=112.45 Aligned_cols=218 Identities=18% Similarity=0.192 Sum_probs=159.1
Q ss_pred CChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHH
Q 007424 17 SDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~--------pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~ 85 (604)
.|.+.+..|+..|..++..-+ ...++.++.+|. ++++.+|..++.+|+.++... ....++ ...++
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 456678888888888876533 223677777775 345789999999999998764 211222 24688
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|++++..||..|+++|+.|+..-.+. .+. ..+++|+..| .+.++.++..|+.||..+....++. ...+
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~ 167 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEA-IKAIV 167 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHH-HHHHH
Confidence 9999999999999999999999999643221 111 2788888877 5778889999999999998753211 1222
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
..+++.|..+|.+++..++..++.+++.++........++ ..+++.|.+.+.+++..+|..|+.+|+.|+...+..+
T Consensus 168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccc
Confidence 2388899999999999999999999998875222111111 2368999999999999999999999999999776444
Q ss_pred hhh
Q 007424 238 PEF 240 (604)
Q Consensus 238 ~py 240 (604)
.+|
T Consensus 248 ~~~ 250 (252)
T 4hxt_A 248 HHH 250 (252)
T ss_dssp ---
T ss_pred ccc
Confidence 443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-11 Score=110.92 Aligned_cols=181 Identities=16% Similarity=0.211 Sum_probs=140.0
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHH
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS 86 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~ 86 (604)
..+++.|.- .|.+.+..|+..|-.+. +++.++.++.+|. ++++.+|..++.+||.+.. +..++.
T Consensus 17 ~~~i~~L~~-~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~--------~~~~~~ 80 (201)
T 3ltj_A 17 EMYIKNLQD-DSYYVRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEP 80 (201)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHC---CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHH
Confidence 344444432 34446777777766543 3455888888775 4578999999999998853 245677
Q ss_pred HHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 87 IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
+++.|.|+++.||.+|+++|+.+... ..++.|...| .+.++.++..|+.+|..+.+ +..++.
T Consensus 81 L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~ 142 (201)
T 3ltj_A 81 LIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEP 142 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC----------GGGHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HHHHHH
Confidence 78889999999999999999998764 3567777776 67889999999999988743 245667
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 167 L~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
|.++|++++..++.+++.++|.+ +. +..++.|.+++.++++.+|.+|+++|+.|.
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~---~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEI---GG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH---CS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh---Cc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999865 22 467888999999999999999999999864
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-10 Score=121.08 Aligned_cols=247 Identities=11% Similarity=0.105 Sum_probs=179.7
Q ss_pred CChhHHHHHHHHHHHHHhhcC-C--------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHH-HHH
Q 007424 17 SDRDTYSQAAKELDSIAATVD-P--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~-p--------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~-kIl 84 (604)
+|.+.+..|+..|..++..-+ + ..+|.|+.+|... +.+.+|.+++.+|+.++.+. .....+. ..+
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 456678889999988866443 1 2378888888632 23789999999999999864 1111111 488
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
+.+++.|++++..||..|+++|+.|+...... .+. ..+++|+..|..+.++.++..|+.||..++...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999998653211 111 27889998885567888999999999999987655555667
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~ 238 (604)
..+++.|.++|.+++..++..++.+++.++....... ..+ ..+++.|...|.+.++.+|..|+.+|+.|+....+...
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999998898888888887764321111 111 13688899999999999999999999999873222111
Q ss_pred h-----hhhHHHHHHHhccCcc-hhHHHHHHHHHHHHH
Q 007424 239 E-----FKGKCLKIFESKRFDK-VKVVREVMNKMIEAW 270 (604)
Q Consensus 239 p-----y~~~~i~~Le~cRfDK-vK~VRda~~~AL~~w 270 (604)
. ....++..|. +. -..||..+..+|.-+
T Consensus 323 ~~~~~~~l~~L~~lL~----~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLT----QNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHTTTHHHHHHHHHH----SCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHc----CCCcHHHHHHHHHHHHHH
Confidence 1 1244456665 33 567888877777765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=108.37 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|.+.+..|+..|-.+. +++.++.|+.+|. ++++.+|..++.+||.+.. +..++.+++.|+|+++.
T Consensus 32 ~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGW 96 (211)
T ss_dssp SHHHHHHHHHHHHHHC---CGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHH
T ss_pred CHHHHHHHHHHHHHhC---CccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHH
Confidence 4446666666665543 3556888888776 3578999999999998864 34567778889999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh
Q 007424 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k 177 (604)
||.+++++|+.+... ..++.|+..| .+.++.++..|+.+|..+.+ +..++.|.++|++++..
T Consensus 97 vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~ 158 (211)
T 3ltm_A 97 VRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGW 158 (211)
T ss_dssp HHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhCcH-------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHH
Confidence 999999999999764 3567777766 78899999999999988743 23566778889999999
Q ss_pred HHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 178 AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 178 aK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
++.+++.+++.+ +. +..++.|.+++.++++.+|..|+++|+.+....
T Consensus 159 vr~~a~~aL~~~---~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 159 VRQSAADALGEI---GG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHH---CS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHh---Cc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 999988888855 22 467888999999999999999999999887643
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-10 Score=107.09 Aligned_cols=231 Identities=16% Similarity=0.159 Sum_probs=162.9
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
|+.|+.+|. ++++..|..++.+|+.++... .....+ ..+++.+++.|++++..||..|+++|+.|+..-.+..
T Consensus 4 i~~L~~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLT----STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 677777775 345789999999999998765 111222 2478999999999999999999999999997632211
Q ss_pred --hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Q 007424 118 --FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 118 --~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a 192 (604)
+. ..+++|+..| .+.++.++..|+.+|..+....++.....+ ...++.|+++|++++..++..++.+++.++..
T Consensus 80 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 2788888887 567889999999999999863221111111 23788999999999999999999999987753
Q ss_pred CcCcCCc--hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 193 GAVDGSG--LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 193 g~~f~py--f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
....... -..+++.|.++|.++++.+|..|+.+|+.|+....+....+ ...++..|-..=-+.-..||+.+..+|.-
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 2211111 12478999999999999999999999999986322222111 12233333333236667999999999988
Q ss_pred HHhCCCC
Q 007424 270 WKQVPDL 276 (604)
Q Consensus 270 wK~i~~~ 276 (604)
+-.-...
T Consensus 239 l~~~~~~ 245 (252)
T 4hxt_A 239 IKSGGWL 245 (252)
T ss_dssp HHHTCBC
T ss_pred HHcCCCc
Confidence 8665533
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=136.75 Aligned_cols=225 Identities=9% Similarity=-0.004 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhcc----
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR---- 92 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLk---- 92 (604)
.+..=+.|..++.-+.++.++.+++.+.+... +.+|..|.+++.+||.++++. ...++|+.+++.++..+.
T Consensus 430 f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 33333666666655555558888888866533 368999999999999999877 478999999999998776
Q ss_pred -CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCC--------ChhhH
Q 007424 93 -DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDP--------DAGKL 160 (604)
Q Consensus 93 -DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~d~--------i~~yL 160 (604)
|+...||+.+++++|++++|+... ..+|+|++..|+. +.++.+|..||.|+..+++..... ..+|+
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~--~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~ 587 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHC--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH
Confidence 577789999999999999999542 2478888888864 567889999999999999985432 24699
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcC--------------CcHHHHHH-H
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSS--------------QDWAARKA-A 222 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~---f~pyf~~lm~~L~e~L~s--------------~Dw~lRka-A 222 (604)
+.|+..+.+.+..-..+....++.+||.++++.+. -..|+..+|+.+.+.|.. .|...+-+ -
T Consensus 588 ~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~i 667 (1023)
T 4hat_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1023)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHH
Confidence 99999999998766777778899999999975432 125676677666655521 11122222 3
Q ss_pred HHHHHHHHHHcCcchhhhhhHHHHHH
Q 007424 223 AEALWRLAVVEKDAVPEFKGKCLKIF 248 (604)
Q Consensus 223 aDaLg~LA~~~ge~f~py~~~~i~~L 248 (604)
++++.+++...|..|.|++..+...|
T Consensus 668 l~~~~~v~~~lg~~f~~~~~~i~~~~ 693 (1023)
T 4hat_C 668 IKTNVAVCTSMGADFYPQLGHIYYNM 693 (1023)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 67888889999999999986554433
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-09 Score=117.15 Aligned_cols=256 Identities=13% Similarity=0.172 Sum_probs=171.4
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhh
Q 007424 12 LLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRN 90 (604)
Q Consensus 12 ~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~Ivrr 90 (604)
....|.|.++.--++. |..|+.--.++-.+.++..|.....+++|++||.|+.+++.++... -+.++ +.+++.+.+.
T Consensus 91 l~kdL~~~n~~ir~~A-L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~l 168 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALA-VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRDL 168 (591)
T ss_dssp HGGGSSSSSHHHHHHH-HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHHH
Confidence 3445677775332222 5666665566667777777777777889999999999999998855 22222 3689999999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccc---h-hHHHHH---------------------------------HHHHHH---c
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGAS---A-FVTMLK---------------------------------LLSDAL---F 130 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~---~-~~sllk---------------------------------PL~eaL---~ 130 (604)
|.|+|+.|+.+|+.+++.++..-.+. . .+..+. .+++.| +
T Consensus 169 L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 169 IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRL 248 (591)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCS
T ss_pred hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999998763211 0 000111 122222 2
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--CCC-ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCC--------
Q 007424 131 TEQDTNAQVGAALCLAATIDAA--QDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGS-------- 198 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a--~d~-i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~p-------- 198 (604)
.+.+..|...|+.|+-.+.+.. ... +...+..+.+.|+.+++ ++..+|-.++.+|+.++... ..+.+
T Consensus 249 ~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~ 327 (591)
T 2vgl_B 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVK 327 (591)
T ss_dssp CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC
T ss_pred cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheec
Confidence 4556677777777777665433 111 22344566677777665 66788999999999888532 22211
Q ss_pred ----------------------chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcch
Q 007424 199 ----------------------GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKV 256 (604)
Q Consensus 199 ----------------------yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKv 256 (604)
..+.+++.|.+|+.+.|+..|+.++.+|+.+|...++.+.-|.+..++.|. |+.
T Consensus 328 ~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~----~~~ 403 (591)
T 2vgl_B 328 YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ----TKV 403 (591)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCC
T ss_pred cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHc----ccc
Confidence 234578888899999999999999999999997654444445455555555 888
Q ss_pred hHHHHHHHHHHHH-HHhCC
Q 007424 257 KVVREVMNKMIEA-WKQVP 274 (604)
Q Consensus 257 K~VRda~~~AL~~-wK~i~ 274 (604)
..|++.+..+|.. ++..|
T Consensus 404 ~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHCc
Confidence 8998877666543 34444
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=136.39 Aligned_cols=222 Identities=10% Similarity=0.003 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhh--c-ccccHHHHHHHHHhhc-----
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNF----- 91 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h--~-i~p~L~kIl~~IvrrL----- 91 (604)
++.+.+.|+.++...+.+.++.++..|..... +.+|..|.+++.+||.++++. . -.++++.|++.+....
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence 45677788888854444347888888876653 467899999999999998766 2 2456899999888733
Q ss_pred cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCCh--------hhH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA--------GKL 160 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~i~--------~yL 160 (604)
+|+.+.||..+++++|++++|+...+ .++++++..|+ .+.++.||..||.||.++++.....+. +|+
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 25677888889999999999985433 35666666554 466899999999999999998654433 999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCc---CcCCchHHHHHHHHhhhcC------------CcHHHHHH---H
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA---VDGSGLKGLVSCLLGFLSS------------QDWAARKA---A 222 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~---~f~pyf~~lm~~L~e~L~s------------~Dw~lRka---A 222 (604)
+.|+..+..++..-.......++.+||.++.+.+ ...+|+..+|+.+.+.|.. .|-...+. .
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 667 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence 9999999999987666667788999999997543 2458888888777665521 12222222 3
Q ss_pred HHHHHHHHHHcCcchhhhhhHHH
Q 007424 223 AEALWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 223 aDaLg~LA~~~ge~f~py~~~~i 245 (604)
+.++..++...|+.|.|+...+.
T Consensus 668 l~~~~~~~~~l~~~f~p~~~~i~ 690 (1049)
T 3m1i_C 668 IKTNVAVCTSMGADFYPQLGHIY 690 (1049)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 56777788888988888865433
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-10 Score=107.63 Aligned_cols=225 Identities=15% Similarity=0.162 Sum_probs=159.5
Q ss_pred ChHHHHHhhhhcCCCCCCchhHHHHHHHHH-HHhhh-cccccH-HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc
Q 007424 40 LLPTFLSCILSTNSSDKPGVRKECIHVIAT-LSNSH-NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (604)
Q Consensus 40 ~ip~fL~~L~e~~ss~kp~~RKaaI~lLGv-Lae~h-~i~p~L-~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~ 116 (604)
.++.|+..|. ++++..|..++.+|.. ++... .+...+ ..+++.+++.|+++++.||..|+++|+.|+..-.+.
T Consensus 13 ~~~~~~~~L~----s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 13 ELPQMTQQLN----SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp SHHHHHHHHH----SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3888888887 4466899999999965 44322 111111 257899999999999999999999999999753221
Q ss_pred --hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 117 --AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 117 --~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.+. ..+++|+..| .+.++.++..|+.||..+...........+. ..++.|+++|++++..++..++.+++.++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 111 1788888877 5678899999999999997653221111222 278999999999999999999999998775
Q ss_pred cCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh-hhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 192 SGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 192 ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
........+ ..+++.|.+.|.+++..+|..|+.+|+.|+....+....+ ...++..|-..=.+.-..||..+..+|.
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 322111111 2468889999999999999999999999985332222222 2335566665556777899999888876
Q ss_pred H
Q 007424 269 A 269 (604)
Q Consensus 269 ~ 269 (604)
-
T Consensus 248 ~ 248 (252)
T 4db8_A 248 K 248 (252)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=106.15 Aligned_cols=186 Identities=14% Similarity=0.165 Sum_probs=138.5
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS- 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~- 116 (604)
.+.|..+|. ++++.+|.+++.+|+.++.+. .....+ ...++.+++.|+++++.||..|+++|+.|+..-.+.
T Consensus 14 ~~~l~~LL~----s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 14 LPQMVQQLN----SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hHHHHHHhc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 555555554 557899999999999998655 111111 157899999999999999999999999998643221
Q ss_pred -hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Q 007424 117 -AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 117 -~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a 192 (604)
.+. ..+++|+..| .+.++.++..|+.||..+....++.....+ ..+++.|+++|++++..++..++.+++.++..
T Consensus 90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 1788888888 667889999999999999864322111122 23789999999999999999999999988864
Q ss_pred CcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 193 GAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 193 g~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
.......+ ...++.|.+.+.+++..+|..|+.+|+.|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 32221111 2478899999999999999999999998863
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=111.98 Aligned_cols=209 Identities=14% Similarity=0.187 Sum_probs=152.9
Q ss_pred CChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHH--HHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIIN 85 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~--kIl~ 85 (604)
+|.+.+..|+..|..++.. +....++.|+..|.. +++.+|.+++.+|+.++.+. .....+- ..++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 4666888888888554332 123337788877763 34789999999999998754 2222222 3789
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc-h-hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-A-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~-~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.|+++++.||..|+++|+.|+..-... . +. ..+++|+..| .+.++.++..|+.||..+....++. ...+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~ 177 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-IQAVI 177 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence 9999999999999999999999998764321 1 11 1788888887 6678899999999999998653211 1122
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-CchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf~-~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
..+++.|+++|++++..++..++.+++.++....... ...+ .+++.|.+.+.+++..+|..|+.+|+.|+.
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 3368899999999999999999999998874321111 1122 378999999999999999999999998753
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=128.48 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhhcCCCC-hH----HHHHhhhhcC---CCCCCchhHHHHHHHHHHHhhh-c-------ccccHHHHHH
Q 007424 22 YSQAAKELDSIAATVDPTL-LP----TFLSCILSTN---SSDKPGVRKECIHVIATLSNSH-N-------LSPYITKIIN 85 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~-ip----~fL~~L~e~~---ss~kp~~RKaaI~lLGvLae~h-~-------i~p~L~kIl~ 85 (604)
+|--+..|......+.|+. +. .+...+.++. .+.+|..++++|.+|+.++|++ . ..+++|+|++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 4444446655666666666 56 5555665554 2457999999999999999987 2 1368999999
Q ss_pred HHHhhcc-----CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc-----CCChhHHHHHHHHHHHHHhhcCCC
Q 007424 86 SITRNFR-----DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-----EQDTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 86 ~IvrrLk-----DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~-----eqdk~vQ~~AA~cLaalIE~a~d~ 155 (604)
.+.+.+. ++.+.||.++++++|++++|+...+ .+++|++.+++. +.++.++..||+++..+|+.+...
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 9998876 8999999999999999999996533 589999999875 567789999999999999999988
Q ss_pred ChhhHHHHHHHHHHHhcCC---------------------chhHHHHHHHHHHHHHhcCcC----cCCchHHHHHHHHhh
Q 007424 156 DAGKLGRMEVRLERLLKSE---------------------VFKAKAAGLVVVGSVIGSGAV----DGSGLKGLVSCLLGF 210 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~---------------------~~kaK~alLsaIGSiA~ag~~----f~pyf~~lm~~L~e~ 210 (604)
+.+|++.|+..+..+|.-. .|.-.-.+..+||.++++.+. -..|+..+++-+..-
T Consensus 572 L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~ 651 (980)
T 3ibv_A 572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGK 651 (980)
T ss_dssp CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888631 133456699999999976432 125666655544333
Q ss_pred ----hcC---C-cHHHHHHHHHHH---HHHHHHcCc----------chhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 211 ----LSS---Q-DWAARKAAAEAL---WRLAVVEKD----------AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 211 ----L~s---~-Dw~lRkaAaDaL---g~LA~~~ge----------~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
+.. . +-.. .+.+.| |+++....+ .|.+-..-++.+|+. |-+...|||++..+++-
T Consensus 652 l~~~l~~~~~~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~--~~~~~~irea~~~~~~r 727 (980)
T 3ibv_A 652 ANAALSSDLSALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDR--MGFNEDIRGAVRFTSGR 727 (980)
T ss_dssp HHHHHTTSCC--CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHH--SCCSHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHH
Confidence 321 1 2222 333444 555553321 233444555666674 56888999999999887
Q ss_pred HHhCCCC
Q 007424 270 WKQVPDL 276 (604)
Q Consensus 270 wK~i~~~ 276 (604)
+ |+..
T Consensus 728 ~--i~~l 732 (980)
T 3ibv_A 728 I--INVV 732 (980)
T ss_dssp H--TTTT
T ss_pred H--HHHc
Confidence 6 5544
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-09 Score=113.17 Aligned_cols=248 Identities=14% Similarity=0.189 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhccCC
Q 007424 22 YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDK 94 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrLkDp 94 (604)
.+.|+..|-.++.+-.+.. +..+++.|.....+.++.++..+..+|+.++.+. ..... -..+++.++..|.++
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 4566667777776543322 2445555555556778899999999999998765 11111 134677888999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLER 169 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~k 169 (604)
+..|+..|+.+|+.|+..-.... .. ..+++|...| .+.++.++..||.||..+..+..+.....+. .++|.|+.
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 99999999999999986532211 11 1677777777 6778889999999999998753322211222 27889999
Q ss_pred HhcCCchhHHHHHHHHHHHHHhcCcC-cCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C--cchhhhh
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K--DAVPEFK 241 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~ag~~-f~pyf~--~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g--e~f~py~ 241 (604)
+|.+.++.+|..++.+|+-++..+.. ...|+- .+|+.|.+.|.+.|..++..++++|..|.... + +.+..+.
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 464 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 464 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHH
Confidence 99999999999988899887754321 112221 25888999999999999999999999987643 2 1222222
Q ss_pred h--HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 242 G--KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 242 ~--~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
. ..++.||...+++-..|++.+...|+.|
T Consensus 465 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 465 EECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 2478899999999999999999999887
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-09 Score=118.62 Aligned_cols=239 Identities=12% Similarity=0.063 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~ 100 (604)
.+..|+..|-.|. .++-++.++..|.....+.+|++||.|+.+++.+...+ -..++.+++.+.+.|.|+|+.|+.
T Consensus 123 vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~D~d~~V~~ 197 (618)
T 1w63_A 123 VQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLNEKNHGVLH 197 (618)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTTCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhCCCCHhHHH
Confidence 3445555555544 33334555666666666778999999999999998876 122346777888899999999999
Q ss_pred HHHHHHHhhhhhhccc--hhHHHHHHHHHHHcc--------------CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 007424 101 TCISTVSSLSPRVGAS--AFVTMLKLLSDALFT--------------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (604)
Q Consensus 101 Ac~~aLg~LAe~l~d~--~~~sllkPL~eaL~~--------------eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~ 164 (604)
+|+.+++.++..-.+. .+..+++.|+..|.. ..++-.|....-+|..++..-++ ..+.+..++
T Consensus 198 ~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L 276 (618)
T 1w63_A 198 TSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDIL 276 (618)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 9999999998763211 122245555554421 24677888877777777653110 111223344
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~ 244 (604)
+++++-+........+.+++|+..+...... ......++..|..||.+.|-.+|-+|+++|+.|+...++.|.+|..
T Consensus 277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~-- 353 (618)
T 1w63_A 277 AQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS-- 353 (618)
T ss_dssp HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH--
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH--
Confidence 4444322222223344556666666654321 1122357788899999888999999999999999987888888744
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.+..|..|.-..||..+.+.|..+
T Consensus 354 --~i~~~l~d~d~~Ir~~alelL~~l 377 (618)
T 1w63_A 354 --TIVDCLKDLDVSIKRRAMELSFAL 377 (618)
T ss_dssp --HHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred --HHHHHccCCChhHHHHHHHHHHHH
Confidence 445555699999998877766555
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-08 Score=108.64 Aligned_cols=242 Identities=14% Similarity=0.120 Sum_probs=159.9
Q ss_pred HhhhcCChh--HHHHHHHH-HHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHH
Q 007424 12 LLNKLSDRD--TYSQAAKE-LDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSI 87 (604)
Q Consensus 12 ~L~KLsDrD--T~r~A~~e-LD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~I 87 (604)
+-++|.++| ..+-|+.- +..++...+.+. ++.++. ..++++...||-+.+.++.++... ...+.-+++.+
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~----l~~s~~~~~Krl~yl~l~~~~~~~--~e~~~l~~n~l 91 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN----CMQTDNLELKKLVYLYLMNYAKSQ--PDMAIMAVNSF 91 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH----TTSSSCHHHHHHHHHHHHHHHHHS--HHHHHTTHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccC--chHHHHHHHHH
Confidence 334454444 33333333 333444444433 444444 456778899999999999998864 11223446788
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
.+.|+|+++.||..|+.+++.+... .+.. +++++...| .+.++.|+..|+.||.++.+..++.+ +. ..+++.
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~~~----~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~~~-~~-~~~~~~ 164 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIRVD----KITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHDINAQMV-ED-QGFLDS 164 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCCSG----GGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHSSCCCH-HH-HHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHcCChH----HHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhhChhhc-cc-ccHHHH
Confidence 8999999999999999999998633 2222 566666666 78899999999999999999554322 21 468999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCc-C-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHH
Q 007424 167 LERLLKSEVFKAKAAGLVVVGSVIGSGA-V-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (604)
Q Consensus 167 L~klL~s~~~kaK~alLsaIGSiA~ag~-~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~ 244 (604)
|.++|++++..++.+++.+++-++.... . ..+.....++.|...|.+.+-..+...+++|+.++ +.. .+....+
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~~~~~~~ 240 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-DREAQSI 240 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-HHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-hHHHHHH
Confidence 9999999999999999999998775322 1 22333445555665555444334555666665443 211 1234566
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
++.|..+--+.-..||-.+..+|-.+
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 77777777788888887766666554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=118.95 Aligned_cols=227 Identities=8% Similarity=0.021 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhhc-----CCC------ChHHH-HHhhhhcCCCC---CCchhHHHHHHHHHHHhhhcccccHHHHHH
Q 007424 21 TYSQAAKELDSIAATV-----DPT------LLPTF-LSCILSTNSSD---KPGVRKECIHVIATLSNSHNLSPYITKIIN 85 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L-----~pe------~ip~f-L~~L~e~~ss~---kp~~RKaaI~lLGvLae~h~i~p~L~kIl~ 85 (604)
....|+-.|-.++..+ +.. .+..| ...+.+...++ .|.+|..++.++|..++.. -..+++.+++
T Consensus 421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~~~l~ 499 (960)
T 1wa5_C 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLIELMP 499 (960)
T ss_dssp HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHHHHHH
Confidence 5567888888888653 222 55444 44554444444 7899999999999998753 3358999999
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhc----------cchhHHHHHHHHHHHc---cCCC---h--hHHHHHHHHHHH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVG----------ASAFVTMLKLLSDALF---TEQD---T--NAQVGAALCLAA 147 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~----------d~~~~sllkPL~eaL~---~eqd---k--~vQ~~AA~cLaa 147 (604)
.+++.|.|++..||.+|+.|+..|++... ...+.-++.+|+..|+ .+.. . .....+..||..
T Consensus 500 ~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~ 579 (960)
T 1wa5_C 500 ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579 (960)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHH
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHH
Confidence 99999999999999999999999998532 1112226666666654 2210 1 134678999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHhcC----C-chhHHHHHHHHHHHHHhc-Cc-CcCCchHHHHHHHHhhhcCCcHHHHH
Q 007424 148 TIDAAQDPDAGKLGRMEVRLERLLKS----E-VFKAKAAGLVVVGSVIGS-GA-VDGSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 148 lIE~a~d~i~~yL~~L~~RL~klL~s----~-~~kaK~alLsaIGSiA~a-g~-~f~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+++.+++.+.+|+..|+++|...+.. + +......++++|++++.+ +. .+.+|.+.++|.+...|..+.....-
T Consensus 580 vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~ 659 (960)
T 1wa5_C 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIP 659 (960)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 99999999999999999998877743 3 444556799999999986 32 34478888999999988776556677
Q ss_pred HHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 221 AAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 221 aAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
.+.+.++.+.... +.|.+|..++...|.
T Consensus 660 ~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 660 YVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 7899999988776 566666665555444
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=111.21 Aligned_cols=248 Identities=14% Similarity=0.180 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhccCC
Q 007424 22 YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDK 94 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrLkDp 94 (604)
.+.|+..|-.++.+-.+.. +..+++.|.....+.++.++..+..+|+.|+... ..... -..+++.+++.|.++
T Consensus 207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC
Confidence 4556667777776543322 2445555555566778899999999999998765 11111 124678888999999
Q ss_pred ChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLER 169 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~k 169 (604)
+..|+..|+.+|+.|+..-.... .. ..+++|...| .+.+..++..||.+|..+..+..+...... ..++|.|+.
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 99999999999999986542211 11 1566666655 677888999999999998765322111112 237889999
Q ss_pred HhcCCchhHHHHHHHHHHHHHhcCcC-cCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C--cchhhhh
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K--DAVPEFK 241 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~ag~~-f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g--e~f~py~ 241 (604)
+|.+.++.+|..+..+|+-++..+.. ...|+ ..+++.|.+.|.+.|..++..++++|..|.... + +.+..+.
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~i 445 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHH
Confidence 99999999999988899887754321 11222 135788999999999999999999999988643 2 1222222
Q ss_pred --hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 242 --GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 242 --~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
...++.||.+++++-..|++.+...|+.|
T Consensus 446 ee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 446 EECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23578899999999999999999999877
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-08 Score=107.92 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=173.8
Q ss_pred CChhHHHHHHHHHHHHHhh--------cCCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-c--ccccHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT--------VDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-N--LSPYITKII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~--------L~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-~--i~p~L~kIl 84 (604)
.|.+....|+..|-.|+.+ +....+++++.+|..... .......+.+..+|..++.+. . -...+..++
T Consensus 174 ~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 174 PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence 4666888888889888864 234458999999865432 223345677788888888765 2 223467899
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccch-h---HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-F---VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~---~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
|.+++.|.+++..|+..|+++|+.++..-.+.. . ..++++|++.| .+.+..++..|+.||..++...+. ....+
T Consensus 254 p~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~-~~~~i 331 (529)
T 3tpo_A 254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDE-QTQKV 331 (529)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchH-HHHHH
Confidence 999999999999999999999999987643211 1 12788888888 677888999999999888754221 11111
Q ss_pred --HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-c
Q 007424 161 --GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-D 235 (604)
Q Consensus 161 --~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e 235 (604)
...++.|.++|++++..+|..+..+|+-++....... ... ..++|.|...|.+.++.+|+.|+.+|+.++.... +
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~ 411 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE 411 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH
Confidence 1256678899999998999888888888774322111 111 2478899999999999999999999999987433 2
Q ss_pred chhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 236 AVPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 236 ~f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
...-+ ...+|+.|-..=..+-..|+..+.+||.-+=+
T Consensus 412 ~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22111 12233333332235567788888888766543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.5e-08 Score=99.00 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHhhcC-------CCChHHHHH-hhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHH--HHHHHHH
Q 007424 20 DTYSQAAKELDSIAATVD-------PTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIINSIT 88 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L~-------pe~ip~fL~-~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~--kIl~~Iv 88 (604)
+....|+..|..++.+++ ...+|+|+. +|. ++++.+|..|+.+||.++... ...-.+- ..+|.++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 466778888888887654 223788888 664 567899999999999998754 1111111 4677777
Q ss_pred hhcc-CCChhHHHHHHHHHHhhhhhhccc--hhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-
Q 007424 89 RNFR-DKNSALQATCISTVSSLSPRVGAS--AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR- 162 (604)
Q Consensus 89 rrLk-DpDs~VR~Ac~~aLg~LAe~l~d~--~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~- 162 (604)
+.|+ +++..||..|++||+.|+..-... .+.. .+++|+..| .+.+..+|..||.||..++.. ......++-+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~ 208 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM 208 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHc
Confidence 7887 578899999999999998754321 2222 788888888 567889999999999999987 3333445544
Q ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Q 007424 163 -MEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (604)
Q Consensus 163 -L~~RL~klL~s~~~kaK~alLsaIGSiA~a 192 (604)
.++.|+.+|.+++..++..++.+|+.++..
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999865
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=100.16 Aligned_cols=202 Identities=14% Similarity=0.102 Sum_probs=144.0
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhhh-------cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc----
Q 007424 48 ILSTNSSDKPGVRKECIHVIATLSNSH-------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---- 116 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvLae~h-------~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---- 116 (604)
|.+-..|-+|-.|++|+-.|..+.... -..+.+..+++.+.+.+.|++..|...++.++..++..+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 346677889999999998887765544 122235566778889999999999999999999999876431
Q ss_pred ----hh-HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 117 ----AF-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 117 ----~~-~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.. ..+++.|++-.+++..+.+...|..||..+++... .+..+++-+...+++.+.+++.+.+..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11 12677777764467777787788888888887643 234566778889999999999999999988775
Q ss_pred -cCcCc---CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHH
Q 007424 192 -SGAVD---GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREV 262 (604)
Q Consensus 192 -ag~~f---~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda 262 (604)
-|... .+.++.+++.|..+|.+.|-.+|.+|+++++.|-..+|+.+... .+ -=+|++|++--.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~----~~----~~l~~lkp~~~k 235 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLL----EE----ILFKKLKPIQVK 235 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-------------------CTTSSCHHHHH
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhh----hh----hhhhcCCHHHHH
Confidence 34222 24566788888888999999999999999999999888544211 11 114777776543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=94.14 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=133.5
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+...+.+++.|+++|+.||..|+++|+.|+..-.+. .+. ..+++|+..| .+.++.++..|+.||..+....++..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 344567888899999999999999999998653221 111 2788888888 56688999999999999875322111
Q ss_pred hhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cc-hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007424 157 AGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SG-LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (604)
Q Consensus 157 ~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-py-f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ 233 (604)
...+ ...++.|+++|++++..++..++.+|+.++....... .. -..+++.|.+.|.+++..+|..|+.+|+.|+...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 1111 1267899999999999999999999998774221111 11 1247899999999999999999999999998743
Q ss_pred Ccchhh-hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 234 KDAVPE-FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 234 ge~f~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.+.... ....++..|-..--+.-..||+.+..||..+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 221111 1233455555554578889999999998765
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=105.85 Aligned_cols=253 Identities=13% Similarity=0.124 Sum_probs=171.6
Q ss_pred CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh-cc--cccHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-NL--SPYITKII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L--------~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h-~i--~p~L~kIl 84 (604)
.|.+.+..|+..|-.|+.+- ....+++++.+|..... .......+.+..++..++.+. .. ...+..++
T Consensus 155 ~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 234 (510)
T 3ul1_B 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 46678889999998888642 34458899988865432 223345777888888888766 22 22457899
Q ss_pred HHHHhhccCCChhHHHHHHHHHHhhhhhhccch-h---HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH
Q 007424 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-F---VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (604)
Q Consensus 85 ~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~---~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL 160 (604)
|.+++.|.+++..|+..|+++|+.|+..-.+.. . ..++++|++.| .+.+..++..|+.||..++...+......+
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 999999999999999999999999997643211 1 11788888887 677888999999999888654221111111
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cc
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DA 236 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~-pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~ 236 (604)
...++.|.++|++++..+|..+..+|+-++....... ..+ ..++|.|...|.+.++.+|+.|+.+|+.++.... +.
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 1245667889999998899888888887664221111 111 2478899999999999999999999999987433 22
Q ss_pred hhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 237 VPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 237 f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..-+ ...+++.|-..=-.+-..|+..+.+||.-+
T Consensus 394 ~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1111 122333333333356677888888887654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-07 Score=88.72 Aligned_cols=206 Identities=17% Similarity=0.206 Sum_probs=154.8
Q ss_pred HHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH
Q 007424 43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (604)
Q Consensus 43 ~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s 120 (604)
.||..+..+...+-|-++|.+|.++-++++.+ .+.|.+.|++.-+-+ +...-.-++...++|++|..= +....
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~--Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEK--PELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhC--HHHHH
Confidence 46777777777888999999999999999999 888888888765543 233346789999999999873 22222
Q ss_pred -HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCc
Q 007424 121 -MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG 199 (604)
Q Consensus 121 -llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~py 199 (604)
.++-||..+ .--++.+.++.+|+|..+.-+-+ ..++.+...++-+|.+++-.-|-+++..|+ +.|....-|
T Consensus 107 ~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~---alGen~~~y 178 (253)
T 2db0_A 107 SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIE---AMGENSFKY 178 (253)
T ss_dssp HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCTTTHHH
T ss_pred hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHH---HHhccCccc
Confidence 444444444 23388899999999988876542 456778888999999999888999999888 445444456
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHH
Q 007424 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREV 262 (604)
Q Consensus 200 f~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda 262 (604)
..+.+|.|...|.+.|--+|..|.++|+.+|+.- +.|.+.....++-|+..--+=++.||++
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVIKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHCCCSCHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 6667788899999999999999999999999854 3488777777777774444444455544
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-07 Score=105.64 Aligned_cols=253 Identities=11% Similarity=0.063 Sum_probs=165.0
Q ss_pred HHHHhhhcCC--hhHHHHHHHHHHHHHhh-cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHH
Q 007424 9 VNGLLNKLSD--RDTYSQAAKELDSIAAT-VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITK 82 (604)
Q Consensus 9 vl~~L~KLsD--rDT~r~A~~eLD~lA~~-L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~k 82 (604)
+...+.+|.+ .+-++.+++.|..+... +....+|.|+.+|. +.++.+|+.|+.+|+.|+... ......+.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~----~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHC----CCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 3455666643 34556677777654332 33333888888886 456799999999999998754 11123457
Q ss_pred HHHHHHhhccCC-ChhHHHHHHHHHHhhhhhhccc-hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 83 IINSITRNFRDK-NSALQATCISTVSSLSPRVGAS-AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 83 Il~~IvrrLkDp-Ds~VR~Ac~~aLg~LAe~l~d~-~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+++.|++.|++. ++.+|..|+.+|..|+..-... .+. ..+++|++.| .+.++.++..|+.||..+.......-..
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 899999999754 8899999999999988653111 111 2788888888 5667889999999999998764332112
Q ss_pred hH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC----------cCc-----------------------------CC
Q 007424 159 KL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG----------AVD-----------------------------GS 198 (604)
Q Consensus 159 yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag----------~~f-----------------------------~p 198 (604)
+. ...++.|+++|++++.+++..++.++..++... +.. ..
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 22 247888999998888777777666666544210 000 00
Q ss_pred chH-----HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GLK-----GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf~-----~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+.. .+++.|..+|.+.+..++..|+.+|..|+.... +.+.......++.|+ ++-..||..+..+|..+
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~----~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNL 426 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHc----CCCHHHHHHHHHHHHHH
Confidence 011 246888888888888899999999999987553 223333344444454 67788999888888766
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=105.88 Aligned_cols=256 Identities=11% Similarity=0.126 Sum_probs=177.4
Q ss_pred HHHHhhhcC--Chh--HHHHHHHHHHHHHhhcC--CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH
Q 007424 9 VNGLLNKLS--DRD--TYSQAAKELDSIAATVD--PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (604)
Q Consensus 9 vl~~L~KLs--DrD--T~r~A~~eLD~lA~~L~--pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L 80 (604)
+++.|..|. |.+ -+..|+..|-.++..+. ++.++.+|+.|.... + +.++.+|..+|..+|+.+ .+.||+
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 455666665 323 45777888888888875 555888888887776 2 789999999999999988 888999
Q ss_pred HHHHHHHHhhccCC--ChhHHHHHHHHHHhhhhhhc-c--ch-hHHHHHHHHHHHc---cCC--Ch---hHHHHHHHHHH
Q 007424 81 TKIINSITRNFRDK--NSALQATCISTVSSLSPRVG-A--SA-FVTMLKLLSDALF---TEQ--DT---NAQVGAALCLA 146 (604)
Q Consensus 81 ~kIl~~IvrrLkDp--Ds~VR~Ac~~aLg~LAe~l~-d--~~-~~sllkPL~eaL~---~eq--dk---~vQ~~AA~cLa 146 (604)
+.|+..+.+.+..+ +..++..+.+++|.++..+. + .+ +..++.|++..+. ... +. .....+-.+|.
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 99999999999884 56899999999999988653 1 12 3348888888763 111 21 22233444556
Q ss_pred HHHhhcC-------------CCChhhHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhh
Q 007424 147 ATIDAAQ-------------DPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGF 210 (604)
Q Consensus 147 alIE~a~-------------d~i~~yL~~L~~RL~klL~s~--~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~ 210 (604)
.++.... +...+|++.+++-+.++|+.- +..+...+..+++.++. .|+.+.||++.+++.|...
T Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~ 742 (971)
T 2x1g_F 663 TLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVAS 742 (971)
T ss_dssp HHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHH
T ss_pred HHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHH
Confidence 6666543 245678888999888888532 45677888889999885 5777889999999999888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHcCc----------chhhhhhHHHHHHHhc---cCcchhHHHHHHHHHHHHH
Q 007424 211 LSSQDWAARKAAAEALWRLAVVEKD----------AVPEFKGKCLKIFESK---RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 211 L~s~Dw~lRkaAaDaLg~LA~~~ge----------~f~py~~~~i~~Le~c---RfDKvK~VRda~~~AL~~w 270 (604)
+..... ..+++.++.+....|. .|.++...++..|..+ -+|-.+.||++...-+..+
T Consensus 743 ~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~ 812 (971)
T 2x1g_F 743 FQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQI 812 (971)
T ss_dssp CC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHH
T ss_pred HhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHH
Confidence 876443 3477777777776653 2233345556666665 4555677887776665544
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=96.20 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHHhhhcccccH--HHHHHHHHh-hccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHc
Q 007424 58 GVRKECIHVIATLSNSHNLSPYI--TKIINSITR-NFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALF 130 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h~i~p~L--~kIl~~Ivr-rLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~ 130 (604)
..|..++..|..+++....+.-+ --.+|.++. .|+.+++.||..|+++||.++..-.+. -+. ..++||+..|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 35666777777777644111111 134677777 999999999999999999998753221 111 28899998885
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchH--HHHHHH
Q 007424 131 TEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCL 207 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~--~lm~~L 207 (604)
.+.+..++..|++||..++.+-++.....+ ...++-|..+|++++++++..++.+|+.++........++- .+++.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 455788999999999999875332111122 13788899999999999999999999988754333222332 378899
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 208 LGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 208 ~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
.+.|.+.|..+|..|+.+|+.|+..
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999975
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-06 Score=94.68 Aligned_cols=244 Identities=13% Similarity=0.054 Sum_probs=171.3
Q ss_pred ChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+.++.|+..|..|+.+ + ....++.|+.+|. ++++.+|+.++.+|+.++... .....+ ..+++.+
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~L 145 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 145 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHH
Confidence 667888899888887754 1 2323788777775 346789999999999998764 111111 4678999
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH-
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR- 162 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~- 162 (604)
++.|+++++.++.+++.+|..|+..-.+. .+. ..+++|+..|.......++..++.+|..+..+ .....++-.
T Consensus 146 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~~~~~l~~~ 223 (644)
T 2z6h_A 146 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 223 (644)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC--TTHHHHHHHT
T ss_pred HHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC--cccHHHHHHC
Confidence 99999999999999999999998532111 111 26888888885444456777888888777642 222333322
Q ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchh
Q 007424 163 -MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVP 238 (604)
Q Consensus 163 -L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~ 238 (604)
.++.|+++|++.+..++..++.+++.++...... .....+++.|...|.++++.+|..|+.+|+.|+.... +.+.
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~ 302 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6889999999988888888888888887543222 3446789999999999999999999999999986321 1111
Q ss_pred h--hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 E--FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 p--y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
. .....++.|.... ....||..+..||.-+
T Consensus 303 ~~g~v~~Lv~lL~~~~--~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 303 QVGGIEALVRTVLRAG--DREDITEPAICALRHL 334 (644)
T ss_dssp HTTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHccC--CcHHHHHHHHHHHHHH
Confidence 1 1244566666431 1257888888888766
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-06 Score=90.76 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=160.6
Q ss_pred ChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~------L-~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+.++.|+..|..|+.. + ....+|.|+.+|. ++++..|+.++.+|+.++... .....+ ...+|.+
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 148 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence 666778888888777653 1 2223677777665 345778888888888887754 212222 4567888
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhcc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--H
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--G 161 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~ 161 (604)
++.|++++..|+.+++.++..|+..-.+ ..+. ..+++|+..|........+..++.+|..+... +.....+ .
T Consensus 149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~ 226 (529)
T 1jdh_A 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 226 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--TTHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC--cccHHHHHHC
Confidence 8888888888888888888887753111 0111 15777777774444455666677777666542 2222222 2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVP 238 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~ 238 (604)
..++.|.++|++++..++..++.+++.++...... .....++|.|.+.|.+++..+|..|+.+|+.|+.... +.+.
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 37888999999888888888888888877543222 2346789999999999999999999999999976321 2221
Q ss_pred h--hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 E--FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 p--y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
. .....++.|..... ...||..+..+|.-+
T Consensus 306 ~~~~v~~L~~ll~~~~~--~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGD--REDITEPAICALRHL 337 (529)
T ss_dssp HTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHccCC--HHHHHHHHHHHHHHH
Confidence 1 12455666664321 256888877777665
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-07 Score=95.27 Aligned_cols=223 Identities=9% Similarity=0.108 Sum_probs=142.3
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc--chh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--SAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--~~~ 118 (604)
++.++..+. +.++..++.++.+|+.++....-...+..++|.+++.|.++++.||..|+++|+.|+..-.+ ..+
T Consensus 229 ~~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 229 MQALGLHLT----DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp HHHHHTTTT----SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 555555554 44678999999999999887611224578999999999999999999999999999885321 111
Q ss_pred H--HHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCC--hhhH--HHHHHHHHHHhcCCc-hhHHHHHHHHHHHHH
Q 007424 119 V--TMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPD--AGKL--GRMEVRLERLLKSEV-FKAKAAGLVVVGSVI 190 (604)
Q Consensus 119 ~--sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i--~~yL--~~L~~RL~klL~s~~-~kaK~alLsaIGSiA 190 (604)
. ..+++|+..|... .++.++..|+.||..+....++.. ...+ ...++.|.++|.++. ..++..++.+|+-++
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1 2688888888542 347899999999999865432210 0111 125788999999886 478888888888776
Q ss_pred hcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHH----------------------HHHHcC--cchhhhhhHH
Q 007424 191 GSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWR----------------------LAVVEK--DAVPEFKGKC 244 (604)
Q Consensus 191 ~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~----------------------LA~~~g--e~f~py~~~~ 244 (604)
. +......+ ..++|.|.+.|.+.++.+|+.|+.+|+. |+.... ..+.. ..+
T Consensus 385 ~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~--~~~ 461 (529)
T 1jdh_A 385 L-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG--LNT 461 (529)
T ss_dssp T-SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHH--TTC
T ss_pred c-ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhc--cCC
Confidence 4 21111111 1367888888888889998877655443 222100 01111 123
Q ss_pred HHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 245 LKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 245 i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+..|-..=.|....||..+..+|..+
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 34444444588899999988887765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-06 Score=102.72 Aligned_cols=259 Identities=17% Similarity=0.234 Sum_probs=187.7
Q ss_pred cCChhHHHHHHHHHHHHHhh-cCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHh
Q 007424 16 LSDRDTYSQAAKELDSIAAT-VDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITR 89 (604)
Q Consensus 16 LsDrDT~r~A~~eLD~lA~~-L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~Ivr 89 (604)
.+|.+..+.|+..|-.+... .....+ .-++..|.....+-|+. ..|+.+++.||+.. -+-||+-.++|.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 25 VATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 35566667777777665552 222112 34666666655544444 88999999998544 557888888999999
Q ss_pred hccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 90 NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 90 rLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
.+-|-+..||.||-.|+-+|...+.-.....+++.|+++|-..+......+|..+|+.+++.+++.+.-+|+.++|-+..
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 182 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSE 182 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHh
Confidence 99999999999999999999998832223449999999996556778999999999999999877777789999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHH----------------------------------HhhhcC
Q 007424 170 LLKSEVFKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCL----------------------------------LGFLSS 213 (604)
Q Consensus 170 lL~s~~~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L----------------------------------~e~L~s 213 (604)
++-+....+|.++..++-.+.. .+ .+..|+.+.+|.+| ..-|..
T Consensus 183 ~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~ 262 (986)
T 2iw3_A 183 TMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNE 262 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTS
T ss_pred hcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhcc
Confidence 9988777788887777776554 32 23334444444444 444445
Q ss_pred CcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHHHHHh-ccCcchhHHHHHHHHHHHHHHhCCCC
Q 007424 214 QDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFES-KRFDKVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 214 ~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~~Le~-cRfDKvK~VRda~~~AL~~wK~i~~~ 276 (604)
....++..++-.+.-|..-+. ....||....+.-|+. +--=--+.||+.+.+|+..++.+.+.
T Consensus 263 ~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 566666667777888887664 4666776666666653 22223578999999999999999877
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=98.92 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCCh
Q 007424 21 TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNS 96 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs 96 (604)
....|+-.|-.++..++.+. ++.++..|.. ...+.+.+|..++.++|..++.. .-..||+.+++.|++.|.| +
T Consensus 465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~ 541 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--P 541 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--G
T ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--c
Confidence 56667888888998886432 6777876654 34357789999999999998754 2236899999999999977 7
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cC--CChhHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHH
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE--QDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERL 170 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~e--qdk~vQ~~AA~cLaalIE~a~-d~i~~yL~~L~~RL~kl 170 (604)
.|+.+|+.++..|++.+.+ .+.-++.+|+..|+ .. -+...+....-|+..++..++ +...+|+..+|+.+...
T Consensus 542 ~V~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 542 ELSVSSVSTLKKICRECKY-DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp GGHHHHHHHHHHHHHHTGG-GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987643 12224555555442 22 355678888889999998776 44568888888776665
Q ss_pred hc----CC-chhHH---HHHHHHHHHHHhc-CcC----------------------cCCchHHHHHHHHhhhc--CCcHH
Q 007424 171 LK----SE-VFKAK---AAGLVVVGSVIGS-GAV----------------------DGSGLKGLVSCLLGFLS--SQDWA 217 (604)
Q Consensus 171 L~----s~-~~kaK---~alLsaIGSiA~a-g~~----------------------f~pyf~~lm~~L~e~L~--s~Dw~ 217 (604)
++ .+ +...+ ..++++|++++.+ +.. +.+++..+++.+...|. .++-.
T Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 700 (963)
T 2x19_B 621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700 (963)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH
Confidence 53 22 22222 3577788888753 321 12467778888777664 24568
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhHHHHHH
Q 007424 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~ge~f~py~~~~i~~L 248 (604)
++..++.+++.++...|+.|.||...+++.+
T Consensus 701 v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l 731 (963)
T 2x19_B 701 VVEAVCAIFEKSVKTLLDDFAPMVPQLCEML 731 (963)
T ss_dssp HHHHHHHHHHHHHHHSSSTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 8999999999999999988888876655543
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.63 E-value=7e-07 Score=103.40 Aligned_cols=254 Identities=9% Similarity=0.047 Sum_probs=170.3
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhcCCC---------------------------------------C-hHHHHHh
Q 007424 8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPT---------------------------------------L-LPTFLSC 47 (604)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe---------------------------------------~-ip~fL~~ 47 (604)
++++.|. -+|.....-|+..|-.|+..-+.. . +|+|+.+
T Consensus 425 ~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 425 ALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444443 256677778888888888743211 2 6777766
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhhhcccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-c-----hhH
Q 007424 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-S-----AFV 119 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~-----~~~ 119 (604)
+. ++++.+|+.++.+|+.+|...-...++ .-.+|.+++.|++.+..++..|++||+.|+..... . ...
T Consensus 504 L~----s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~ 579 (810)
T 3now_A 504 AK----TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL 579 (810)
T ss_dssp HT----CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred Hc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence 65 556899999999999998533111111 13577888889999999999999999999865321 1 112
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCC
Q 007424 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS 198 (604)
Q Consensus 120 sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~p 198 (604)
..++||+..|..+.+...+.-|+.||..+....++.....+. ..+++|..+|.+++..++.+++.+|+-++........
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 378999998743334344567889998887653211111121 2678999999999999999999999988752111112
Q ss_pred ch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---c-chh--hhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---D-AVP--EFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e-~f~--py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+. ...++.|..+|.+++..+|++|+.+|+.|+.... . .+. ......+++|. +.-..||..+..||.-+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~----s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA----NPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT----CSSHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC----CCCHHHHHHHHHHHHHH
Confidence 22 2478999999999999999999999999987322 1 222 13345566665 45666777777776544
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=101.62 Aligned_cols=254 Identities=10% Similarity=0.088 Sum_probs=180.3
Q ss_pred CChhHHHHHHHHHHHHHhh-------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---c-c-cccHHHHH
Q 007424 17 SDRDTYSQAAKELDSIAAT-------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---N-L-SPYITKII 84 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~-------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~-i-~p~L~kIl 84 (604)
++.+.+..|+..|-.||.+ +....+|+|+.+|.+. .+..|+.|..+|+.|+... . + .......+
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG----TEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 5677888899999999864 1233389999998642 3578999999999998764 2 1 11234588
Q ss_pred HHHHhhccCCCh-hHHHHHHHHHHhhhhhhcc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 85 NSITRNFRDKNS-ALQATCISTVSSLSPRVGA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 85 ~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
|.++..|..... ..+..+++||+.|+..-.+ ..+. ..+++|.+.|. +.++.+|..|+.||..++-+-. ....+
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~-~~~~~ 660 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSED-VIKMF 660 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHH-HHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChH-HHHHH
Confidence 999999874433 4456789999999976321 1111 17888888885 5677899999999999876421 11122
Q ss_pred H--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc-CcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 160 L--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 160 L--~~L~~RL~klL~s~~~kaK~alLsaIGSiA~a-g~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
+ ...++-|+++|++++..+|.++..+|+.++.. .......+ ...++.|.++|.++|..+|+.|+.+|+.|+...+
T Consensus 661 v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 2 13677899999999999999988998888752 21111112 3578999999999999999999999999987433
Q ss_pred cchhh-hhhHHHHHHHhcc-Cc--chhHHHHHHHHHHHHHHhCCCC
Q 007424 235 DAVPE-FKGKCLKIFESKR-FD--KVKVVREVMNKMIEAWKQVPDL 276 (604)
Q Consensus 235 e~f~p-y~~~~i~~Le~cR-fD--KvK~VRda~~~AL~~wK~i~~~ 276 (604)
+...- ...-+++.|..+- .- |-..|++.+.+||+.+-++.-.
T Consensus 741 e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 741 EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 32211 1256788888873 32 5788999999999887665544
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.2e-07 Score=99.60 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=164.0
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhcc
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFR 92 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLk 92 (604)
++.+..+.|+..|-.|+..-+... +..++..|.....+.++.+|+.+..+|+.|+... .....+ ...++.+++.|.
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 355678888888988888754322 3444444444445667899999999999998753 111111 236777888887
Q ss_pred CC-C-hhHHHHHHHHHHhhhhhhcc----ch-h--HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--H
Q 007424 93 DK-N-SALQATCISTVSSLSPRVGA----SA-F--VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--G 161 (604)
Q Consensus 93 Dp-D-s~VR~Ac~~aLg~LAe~l~d----~~-~--~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~ 161 (604)
++ + ..||..|+.+|+.|+....+ +. + ...+++|+..|..+.++.++..|+.+|..+..+... ...+ .
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~--~~~i~~~ 393 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN--HAPLREQ 393 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG--HHHHHHT
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH--HHHHHHc
Confidence 63 3 68999999999999864321 11 1 126888888884444568999999999988764221 1222 2
Q ss_pred HHHHHHHHHhcCCchh----------------------HHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHH
Q 007424 162 RMEVRLERLLKSEVFK----------------------AKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWA 217 (604)
Q Consensus 162 ~L~~RL~klL~s~~~k----------------------aK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~ 217 (604)
.+++.|+++|.+.++. ++.+++.+++.++... ....++ ...++.|.++|.+.+..
T Consensus 394 ~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~ 472 (644)
T 2z6h_A 394 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIEN 472 (644)
T ss_dssp THHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred CCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCCHH
Confidence 2677788888764433 3445555666554321 100111 23678899999999999
Q ss_pred HHHHHHHHHHHHHHHc--CcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 218 ARKAAAEALWRLAVVE--KDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 218 lRkaAaDaLg~LA~~~--ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+|+.|+.+|+.|+... .+.|. ....+..|..+-.|.-..||..+..||..+
T Consensus 473 v~~~a~~aL~~l~~~~~~~~~i~--~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 473 IQRVAAGVLCELAQDKEAAEAIE--AEGATAPLTELLHSRNEGVATYAAAVLFRM 525 (644)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHH--HcCChhHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999988521 11221 133567788888899999999999888765
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=99.79 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=161.8
Q ss_pred ChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L-------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+.++.|+..|..|+..- ....|+.|+.+|. +.++.+|++++.+|+.|+... .....+ ..+++.+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L 281 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence 6678888888888776531 1223677776665 345788999999999998765 222222 3578888
Q ss_pred HhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--H
Q 007424 88 TRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--G 161 (604)
Q Consensus 88 vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~ 161 (604)
++.|++++..|+..++.+|..++..-.+. .+. ..+++|+..|........+..++.+|..+... ......+ .
T Consensus 282 v~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~ 359 (780)
T 2z6g_A 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 359 (780)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TTHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hHHHHHHHHh
Confidence 88999888889998888888777421110 011 26777888774444445666777777777643 1111222 1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCc---chh
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD---AVP 238 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge---~f~ 238 (604)
..++.|+.+|.+.+..++..++.+++.++.....+ .....+++.|...|.+++|.+|..|+.+|+.|+....+ .+.
T Consensus 360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 26788999999888777777788888777543222 23467999999999999999999999999999763211 111
Q ss_pred --hhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 --EFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 --py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.....+++.|.... ....||+.+..+|.-+
T Consensus 439 ~~g~i~~Lv~lL~~~~--~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAG--DREDITEPAICALRHL 470 (780)
T ss_dssp TTTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 12245566665321 1137888887777655
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.5e-07 Score=99.05 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=145.2
Q ss_pred HHHHHhhcCCCChHHHHHhhhhcC--CCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHH
Q 007424 29 LDSIAATVDPTLLPTFLSCILSTN--SSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCIST 105 (604)
Q Consensus 29 LD~lA~~L~pe~ip~fL~~L~e~~--ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~a 105 (604)
|..|+.--.|+-++.++..|.... .+.+|++||.|+.++.-+...+ -+.++ +.+++.+.+.|.|+|+.|..+|+.+
T Consensus 132 Lr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~ 210 (621)
T 2vgl_A 132 LHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-GDWTSRVVHLLNDQHLGVVTAATSL 210 (621)
T ss_dssp HHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-CSCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-hhHHHHHHHHhCCCCccHHHHHHHH
Confidence 334444334444555555555555 6778999999999999998866 33342 4566777888999999999999999
Q ss_pred HHhhhhhhccchhHHHHHHHHHHH---ccC--C-----------ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Q 007424 106 VSSLSPRVGASAFVTMLKLLSDAL---FTE--Q-----------DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (604)
Q Consensus 106 Lg~LAe~l~d~~~~sllkPL~eaL---~~e--q-----------dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~k 169 (604)
+..++..-.+ .+..+++.++..| +.. - ++-.|...--.|..+...-+....+.+..++++++.
T Consensus 211 l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 211 ITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp HHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9888775321 1112333333322 111 1 455665544444433321011112344555556654
Q ss_pred Hhc-CC---chh----HHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhh
Q 007424 170 LLK-SE---VFK----AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE 239 (604)
Q Consensus 170 lL~-s~---~~k----aK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~p 239 (604)
.+. .+ ..+ ..+-+++|+..+...+ .+.++...++..|..+|.+.|-.+|-.|+++|..|+...+ +.|.+
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~ 368 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT 368 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH
Confidence 432 22 111 1244677777777654 2336677889999999999999999999999999987665 56666
Q ss_pred hhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 240 FKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|...++..| ++|.-..||.-+.+.|-.+
T Consensus 369 ~~~~i~~~L---~~d~d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 369 HIETVINAL---KTERDVSVRQRAVDLLYAM 396 (621)
T ss_dssp THHHHHHHH---TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCCHhHHHHHHHHHHHH
Confidence 655544444 4577788887665554433
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-06 Score=94.77 Aligned_cols=237 Identities=13% Similarity=0.121 Sum_probs=158.6
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccC---
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD--- 93 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkD--- 93 (604)
+.--++.|+-.|-.+... .|+.++.|++.|.+...+.++.++-+|+.+|+.++... -...++.+++|.+++.|++
T Consensus 155 ~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp CHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHc
Confidence 344677888888888774 56677888888888888889999999999999997654 2223445556666665553
Q ss_pred ------------CChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHcc-CC----ChhHHHHHHHHHHHHHhhcCCC
Q 007424 94 ------------KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFT-EQ----DTNAQVGAALCLAATIDAAQDP 155 (604)
Q Consensus 94 ------------pDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~-eq----dk~vQ~~AA~cLaalIE~a~d~ 155 (604)
+++-++-..++.++.++..- +.... ++..|...+-. +. +..+...|+.|+..+ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~- 306 (618)
T 1w63_A 234 SGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KS- 306 (618)
T ss_dssp SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CC-
T ss_pred CCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CC-
Confidence 57788888999999988652 21111 33333332210 11 223444555554332 21
Q ss_pred ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007424 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (604)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g 234 (604)
..+.....+..|.++|.+++..+|-+++.+++.++... ..+.+|. ..+..+|.++|..+|+.|+|+|+.|+..
T Consensus 307 ~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~~-- 380 (618)
T 1w63_A 307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVNG-- 380 (618)
T ss_dssp CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCCS--
T ss_pred CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHccc--
Confidence 12233456778888999888899999999999998743 3333444 4566667789999999999999998763
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
+.+.......++.+++ .-..+|..+..+|..+-.
T Consensus 381 ~nv~~iv~eL~~~l~~----~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 381 NNIRGMMKELLYFLDS----CEPEFKADCASGIFLAAE 414 (618)
T ss_dssp SSTHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHH
Confidence 3455555666666763 345788888888877744
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=97.96 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=142.8
Q ss_pred HHHHHHHHH-HHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKEL-DSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eL-D~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
..+-++.-| -.+...-|-+. ++..+.++ ++++...||-+++.+..+++.. ...+--++..+.+-|+|+++.+
T Consensus 54 ~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~----~s~~~~~Krl~YL~l~~~~~~~--~e~~~L~iN~l~kDl~~~n~~i 127 (621)
T 2vgl_A 54 SKKKYVCKLLFIFLLGHDIDFGHMEAVNLL----SSNRYTEKQIGYLFISVLVNSN--SELIRLINNAIKNDLASRNPTF 127 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCCCSCHHHHHHGG----GCSCHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHh----cCCCHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHhcCCCCHHH
Confidence 344444333 23333334333 44444444 4678899999999999998876 2334566789999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhHH-HHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCch
Q 007424 99 QATCISTVSSLSPRVGASAFVT-MLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF 176 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~-~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~ 176 (604)
|..|+.+++.+... .+.. +++++...|. .+.++.|...|++|+.++.+-.++.+ ++ +.++++|.++|++++.
T Consensus 128 r~lALr~L~~i~~~----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~~-~~~~~~l~~lL~d~d~ 201 (621)
T 2vgl_A 128 MGLALHCIANVGSR----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-PM-GDWTSRVVHLLNDQHL 201 (621)
T ss_dssp HHHHHHHHHHHCCH----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-CC-CSCHHHHHHHTTCSCH
T ss_pred HHHHHHHhhccCCH----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-Cc-hhHHHHHHHHhCCCCc
Confidence 99999999999653 2222 6666666663 57899999999999999999654322 22 3688899999999899
Q ss_pred hHHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhcCC-------------cHHHHHHHHHHHHHHHH
Q 007424 177 KAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLSSQ-------------DWAARKAAAEALWRLAV 231 (604)
Q Consensus 177 kaK~alLsaIGSiA~ag-~~f~pyf~~lm~~L~e~L~s~-------------Dw~lRkaAaDaLg~LA~ 231 (604)
.++.+++.++..++... ..+.++++.++..|..++... +-+++-..++.|+.++.
T Consensus 202 ~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 202 GVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 99999999999988643 456688888888887776431 33456666777766553
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-06 Score=89.90 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=165.3
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-------CCCCCCchhHHHHHHHHHHHhhh-c
Q 007424 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-N 75 (604)
Q Consensus 4 eLk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~-------~ss~kp~~RKaaI~lLGvLae~h-~ 75 (604)
+.+...+.+|-+|+-.+..|-++-+ ...+++++..|... ..+.++..++++..+|..||.+. -
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~---------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~ 117 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNE---------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHH---------TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH---------cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3444555566666432333433322 22377777777421 12234678999999999998765 1
Q ss_pred cccc---HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh-cc--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHH
Q 007424 76 LSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRV-GA--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 76 i~p~---L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l-~d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
.... ..-+||.+++.|+.++..|+..++++|+.|+..- .+ ..+. ..++||+..|....+..++..|+.||-.
T Consensus 118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222 2456899999999999999999999999998641 11 1111 2799999987666677889888888887
Q ss_pred HHhhcCCCChhhH--HHHHHHHHHHhcCCch----hHHHHHHHHHHHHHh---cCcCcCCch--HHHHHHHHhhhcCCcH
Q 007424 148 TIDAAQDPDAGKL--GRMEVRLERLLKSEVF----KAKAAGLVVVGSVIG---SGAVDGSGL--KGLVSCLLGFLSSQDW 216 (604)
Q Consensus 148 lIE~a~d~i~~yL--~~L~~RL~klL~s~~~----kaK~alLsaIGSiA~---ag~~f~pyf--~~lm~~L~e~L~s~Dw 216 (604)
+.-..++.-.... .-.+|-|.++|.+.+. .++..+..++..++. ........+ ...+|.|.+.|.+.+.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 7652111111222 3477889999987643 366666666666653 121111111 1368899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCcchhh-hhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 217 AARKAAAEALWRLAVVEKDAVPE-FKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 217 ~lRkaAaDaLg~LA~~~ge~f~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.+++.|+-+|+.|+....+.... ...-++..|-..=.++-+.||+.+..||.-+-
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999998421111111 11344555555555677888999888887664
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-05 Score=81.49 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=135.8
Q ss_pred CCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-----h--hHHHHHHHH
Q 007424 56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-----A--FVTMLKLLS 126 (604)
Q Consensus 56 kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-----~--~~sllkPL~ 126 (604)
++..|-+++-.|-...+.. .+...++-++..+.-|+.|++..|-..|++.|..+...+.+. . ...+++.|+
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv 138 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL 138 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 5556666664444433333 556678888888888999999999999999999998888652 1 123899999
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHH-
Q 007424 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLV- 204 (604)
Q Consensus 127 eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm- 204 (604)
+-| |++...+...+-.+|..+.+..+ ..++.+.+++.+++.+.++|...+..|++++. .|..+ ...+
T Consensus 139 eKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~ 207 (266)
T 2of3_A 139 LKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS 207 (266)
T ss_dssp HGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred HHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence 999 78877788888777866665432 25588889999999999999999999999996 44332 3356
Q ss_pred --HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 205 --SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 205 --~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
+.+..++.+.|-.+|.+|+.+|..+=..+||.+--|
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 889999999999999999999999999999766555
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-06 Score=91.16 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=153.4
Q ss_pred ChHHHHHhhhhc-------CCCCCCchhHHHHHHHHHHHhhh-ccccc---HHHHHHHHHhhccCCChhHHHHHHHHHHh
Q 007424 40 LLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-NLSPY---ITKIINSITRNFRDKNSALQATCISTVSS 108 (604)
Q Consensus 40 ~ip~fL~~L~e~-------~ss~kp~~RKaaI~lLGvLae~h-~i~p~---L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~ 108 (604)
.+++++..|... ..+.++..++++..+|..||.+. ..... ..-+||.+++.|+.++..|+..|+++|+.
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 378888888421 11234568999999999999765 12222 34578999999999999999999999999
Q ss_pred hhhhhc-c--chhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHHhcCCch----h
Q 007424 109 LSPRVG-A--SAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVF----K 177 (604)
Q Consensus 109 LAe~l~-d--~~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~klL~s~~~----k 177 (604)
|+..-. + ..+. ..++||+..|....+..++..|+.||..+.-..++.-.... .-.+|-|.++|.+.+. .
T Consensus 270 Ls~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~ 349 (458)
T 3nmz_A 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349 (458)
T ss_dssp HTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTH
T ss_pred HhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHH
Confidence 986411 1 1111 27999999886666778999999999887652111111121 2367788899987643 3
Q ss_pred HHHHHHHHHHHHHh--cC-cCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhh-hhHHHHHHHhc
Q 007424 178 AKAAGLVVVGSVIG--SG-AVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEF-KGKCLKIFESK 251 (604)
Q Consensus 178 aK~alLsaIGSiA~--ag-~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py-~~~~i~~Le~c 251 (604)
++..+..+|..++. ++ ......+ ...+|.|.+.|.+.+..+++.|+-+|+.|+....+..... ..-++..|-..
T Consensus 350 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 56666666666654 12 1111111 1368889999999999999999999999985222211111 13445555555
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
--.+-+.||+.+..||.-+
T Consensus 430 L~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 4467778898888888765
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-06 Score=101.24 Aligned_cols=215 Identities=10% Similarity=0.016 Sum_probs=151.8
Q ss_pred HHHHHHHhhcCCCC-hHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhhc----ccccHHHHHHHHHhhccCC-----
Q 007424 27 KELDSIAATVDPTL-LPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSHN----LSPYITKIINSITRNFRDK----- 94 (604)
Q Consensus 27 ~eLD~lA~~L~pe~-ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h~----i~p~L~kIl~~IvrrLkDp----- 94 (604)
+.|.-+ .+|.++. +..+++.|..... ...|..+.+.+-++|.++ |+. =.++|+.||+.++.....+
T Consensus 461 d~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 461 ETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchHHHHHHHHhcccccccccch
Confidence 334444 3666554 7777777765432 346899999999999998 452 3478999999999777443
Q ss_pred ChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--------ChhhHHHH
Q 007424 95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--------DAGKLGRM 163 (604)
Q Consensus 95 Ds~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~--------i~~yL~~L 163 (604)
-+.|+...++++|++.+|+... ..||+|++..|+ .+.++.+|.+||.|+..+++..... ..+|+..|
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~i 616 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI 616 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHhC--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Confidence 4678888899999999999543 247777777775 4678899999999999999986543 24688888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC-c--CCchHHHHHHHHhhhc--------------CCcHHHHHH-HHHH
Q 007424 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-D--GSGLKGLVSCLLGFLS--------------SQDWAARKA-AAEA 225 (604)
Q Consensus 164 ~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~-f--~pyf~~lm~~L~e~L~--------------s~Dw~lRka-AaDa 225 (604)
+..+......=..+..-.++.+||.++.+-+. - ..|+..+|+-+.+.|. +.++-.+-+ .+++
T Consensus 617 l~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~ 696 (1073)
T 3gjx_A 617 LNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKT 696 (1073)
T ss_dssp HTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhh
Confidence 88888777554555667799999999974332 2 3566666655555442 223322222 2356
Q ss_pred HHHHHHHcCcchhhhhhHHH
Q 007424 226 LWRLAVVEKDAVPEFKGKCL 245 (604)
Q Consensus 226 Lg~LA~~~ge~f~py~~~~i 245 (604)
..+++...|..|.|+...+.
T Consensus 697 n~~v~~~~g~~f~~~~~~i~ 716 (1073)
T 3gjx_A 697 NVRACKAVGHPFVIQLGRIY 716 (1073)
T ss_dssp HHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHhhcchhHHHHHHHHH
Confidence 66788899999998886663
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=101.18 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=167.1
Q ss_pred HHHHhhhcCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--cccccHHHH
Q 007424 9 VNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKI 83 (604)
Q Consensus 9 vl~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~i~p~L~kI 83 (604)
+-.+|+.++|.+ -...|...++.|+..++|+.+..+|+.|.++.. +.||..+-+++.+|+.+++.+ .+.-.||.|
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL 176 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence 345677778866 566677789999999999997777777766654 348999999999999999887 888999999
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCChhhHH
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDAGKLG 161 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a--~d~i~~yL~ 161 (604)
+|++....-|.-+-|..|+..++..++.-+....+.-|++-|+++|. +++. +. -|+..+-... .+...+-|.
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~-~p~~-~~----~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA-DPTE-VP----ETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH-CTTH-HH----HHHHHHTTCCCCSCCCHHHHH
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc-Chhh-hH----HHHHHhhcCeeEeeecchhHH
Confidence 99999999999999999999999999988754334448999999994 4443 22 3455555442 333457889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCc--CcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHH
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGA--VDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~--~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~ 231 (604)
-|.|=|.+-|+......|-.....|.-+.. +.. ..-||++.++|.|..... -.|-++|..|..++.+|-.
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999988877777665556665554 332 223888888999887664 4689999999888888754
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-07 Score=83.36 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=86.1
Q ss_pred HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHH
Q 007424 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM 121 (604)
Q Consensus 42 p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sl 121 (604)
+..+..|.....++++.+|..++.+||.+... . ++.+++.|+|+++.||.+++++||.+... ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------~a 74 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----A----FEPLLESLSNEDWRIRGAAAWIIGNFQDE-------RA 74 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------HH
Confidence 33444444445567889999999998865432 1 37788899999999999999999999754 36
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 007424 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (604)
Q Consensus 122 lkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIG 187 (604)
+++|+..| .+.++.|+..|+.+|..+.+ +..++.|.++|++++..++.+++.+++
T Consensus 75 ~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 75 VEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 78888888 67888999999999987742 345667777888777788877777665
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.1e-08 Score=85.88 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=90.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~ 158 (604)
+.+.-++.++..|+|+++.||.+++++|+.+.... +++|+..| .+.++.++..|+.+|..+.+
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSSTT--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC--------
Confidence 45556678889999999999999999999886542 47777777 68899999999998876542
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 159 yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
+..++.|.++|++++..++.+++.++|.+ +. +..++.|.+.|.++|+.+|..|+.+|+.|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~---~~------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQI---GG------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHH---CS------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 34567788888889999999988888854 32 35788899999999999999999998753
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-06 Score=90.12 Aligned_cols=234 Identities=14% Similarity=0.086 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
|-.-.|+..-.|..++.. +++.| ...+.|..-.+++++.+|--||+.|+-+.. ...++.|.+.|.+.|.|.++.
T Consensus 81 d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~py 154 (355)
T 3tjz_B 81 DPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPS 154 (355)
T ss_dssp CHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHH
Confidence 444778888888888886 44445 667778777788899999999999998876 346788899999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----------CCC-C-hhhH---
Q 007424 98 LQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA-----------QDP-D-AGKL--- 160 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a-----------~d~-i-~~yL--- 160 (604)
||.+|+.++..|.....+ .. .|+.-+-+++ .+.++.||..|..+|..+.+.- ... + .++.
T Consensus 155 VRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~ 231 (355)
T 3tjz_B 155 VSSSALVSSLHLLKCSFD--VVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCM 231 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH--HHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHH
Confidence 999999999887666422 11 2777777776 6788889976666665555421 110 0 0111
Q ss_pred -----------------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHH
Q 007424 161 -----------------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAA 223 (604)
Q Consensus 161 -----------------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAa 223 (604)
..+++.|...|++.+..+ +++|+..|..........+...+..|+-||.+.|-.+|-+|+
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aV---vyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaL 308 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMV---VYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAV 308 (355)
T ss_dssp HHHHHTCC-----------------CCCCCSSHHH---HHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHH
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCChHH---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 123333444444444333 455555554322211123344567788889999999999999
Q ss_pred HHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHH
Q 007424 224 EALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMI 267 (604)
Q Consensus 224 DaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL 267 (604)
+.|..|+...++.+... -.-+|+|=-|--+.++--|..+|
T Consensus 309 r~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 309 RTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HCC-----------------------------------------
T ss_pred HHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 99999999888887765 44455555588777766655443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-05 Score=78.68 Aligned_cols=178 Identities=11% Similarity=0.089 Sum_probs=127.7
Q ss_pred hhcCChh--HHHHHHHHHHHHHhhcCCCC--------hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--------c
Q 007424 14 NKLSDRD--TYSQAAKELDSIAATVDPTL--------LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--------N 75 (604)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~lA~~L~pe~--------ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--------~ 75 (604)
.+|.+.. .+.-|+++|..+....+... +..++..+.....+.+..+-..++.++..++..+ .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3555555 77889999988777643221 2122233333444557788999999999887654 3
Q ss_pred ccccHHHHHHHHHhh-ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 76 LSPYITKIINSITRN-FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 76 i~p~L~kIl~~Ivrr-LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
..+++..++|.|+.+ |.|+...+|.++..++-.+++... +...++..|+.++ ...++.++.++..+|..+++..+.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCC
Confidence 446788899988865 899999999999999988887652 2223455555555 677899999999999999988554
Q ss_pred CC---hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCc
Q 007424 155 PD---AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGA 194 (604)
Q Consensus 155 ~i---~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~ 194 (604)
.. .+.++.+++-+.++|++.+..+|.+++.+++.+-. .|.
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 32 34678899999999999999999999999998775 553
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0001 Score=78.97 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=91.1
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhcCC--------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH
Q 007424 10 NGLLNKLSDRDTYSQAAKELDSIAATVDP--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI 80 (604)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~lA~~L~p--------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L 80 (604)
+..|.. +|.+.+..|+..|..|+.+-++ ..||.|+.+|. ++++..++++..+|..|+... .....+
T Consensus 8 v~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 8 VQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR----SPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT----SSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344432 5777888888888888754332 12688887776 456789999999999998753 111111
Q ss_pred --HHHHHHHHhhcc-CCChhHHHHHHHHHHhhhhhhccch--hH-HHHHHHHHHHcc--------C-------CChhHHH
Q 007424 81 --TKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASA--FV-TMLKLLSDALFT--------E-------QDTNAQV 139 (604)
Q Consensus 81 --~kIl~~IvrrLk-DpDs~VR~Ac~~aLg~LAe~l~d~~--~~-sllkPL~eaL~~--------e-------qdk~vQ~ 139 (604)
.-.+|.+++.|+ .++..|+..++++|+.|+.. .+.. +. ..++||+..|.. . .+..++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 134678888898 78899999999999999987 3211 11 378888888831 1 2345556
Q ss_pred HHHHHHHHHHh
Q 007424 140 GAALCLAATID 150 (604)
Q Consensus 140 ~AA~cLaalIE 150 (604)
.|+.||..+..
T Consensus 162 ~a~~aL~nLs~ 172 (457)
T 1xm9_A 162 NATGCLRNLSS 172 (457)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 77777766554
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=77.77 Aligned_cols=258 Identities=13% Similarity=0.137 Sum_probs=155.9
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhcCCC-------ChHHHHHhhhh------cCCC------CCCchhHHHHHHHHH
Q 007424 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPT-------LLPTFLSCILS------TNSS------DKPGVRKECIHVIAT 69 (604)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe-------~ip~fL~~L~e------~~ss------~kp~~RKaaI~lLGv 69 (604)
+++.|.+=+|.+....|+..|-.|+.+ +.- .+|+|+.+|.. ...+ .++...+.++.+|..
T Consensus 91 Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~n 169 (457)
T 1xm9_A 91 AVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRN 169 (457)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHH
Confidence 344554445778899999999999986 322 26888888832 0111 245667799999999
Q ss_pred HHhhh----cccccHHHHHHHHHhhccC------CChhHHHHHHHHHHhhhhhhc-------------------------
Q 007424 70 LSNSH----NLSPYITKIINSITRNFRD------KNSALQATCISTVSSLSPRVG------------------------- 114 (604)
Q Consensus 70 Lae~h----~i~p~L~kIl~~IvrrLkD------pDs~VR~Ac~~aLg~LAe~l~------------------------- 114 (604)
||... .+... +.+++.++..|++ ++..+.+.|+.+|..|+..+.
T Consensus 170 Ls~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (457)
T 1xm9_A 170 LSSADAGRQTMRNY-SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248 (457)
T ss_dssp HTTSHHHHHHHTTS-TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred HccCHHHHHHHHHc-CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc
Confidence 98654 22210 1344555555542 555566667666777653210
Q ss_pred -------------------------cch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChh----hH-
Q 007424 115 -------------------------ASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG----KL- 160 (604)
Q Consensus 115 -------------------------d~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~----yL- 160 (604)
++. ....+++|+..|....++.++..|+.||..++-+-...... .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~ 328 (457)
T 1xm9_A 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328 (457)
T ss_dssp -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred hhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHH
Confidence 000 01267888888865667889999999999988653221111 12
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcH------HHHHHHHHHHHHHHHHc
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDW------AARKAAAEALWRLAVVE 233 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw------~lRkaAaDaLg~LA~~~ 233 (604)
...+|.|+++|.++++.++..++.+|+-++.-...-.-.-...||.|.+.|...+. .+-.+|+.+|+.|....
T Consensus 329 ~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~ 408 (457)
T 1xm9_A 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408 (457)
T ss_dssp TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence 23578999999999999999989999987752211111123578889999986543 46667888888876533
Q ss_pred Ccchhhhh-hHHHHHHHhccCcc-hhHHHHHHHHHHH
Q 007424 234 KDAVPEFK-GKCLKIFESKRFDK-VKVVREVMNKMIE 268 (604)
Q Consensus 234 ge~f~py~-~~~i~~Le~cRfDK-vK~VRda~~~AL~ 268 (604)
.+....+. ...++.|.+....+ -..||..+...|+
T Consensus 409 ~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 32222111 22333333333333 3456666666665
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.8e-05 Score=92.30 Aligned_cols=214 Identities=13% Similarity=0.020 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhh----hhcCC---------------------CCCCchhHHHHHHHHHHHhhh--
Q 007424 22 YSQAAKELDSIAATVDPTLLPTFLSCI----LSTNS---------------------SDKPGVRKECIHVIATLSNSH-- 74 (604)
Q Consensus 22 ~r~A~~eLD~lA~~L~pe~ip~fL~~L----~e~~s---------------------s~kp~~RKaaI~lLGvLae~h-- 74 (604)
++.....|+.++.-.|...+..++..| ..... ++.+....+.+..++.+.+++
T Consensus 440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~ 519 (1204)
T 3a6p_A 440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR 519 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556677777766665565444444 32111 112234566778888887777
Q ss_pred cc-cccHH-HHHHHHHhhc---cCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---C------------CC
Q 007424 75 NL-SPYIT-KIINSITRNF---RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT---E------------QD 134 (604)
Q Consensus 75 ~i-~p~L~-kIl~~IvrrL---kDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---e------------qd 134 (604)
.. .++++ .+++.++..| ...++.+|..+...+|.+++|+...| .+++|+++.|+. + .+
T Consensus 520 ~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 520 TLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 23 36666 3555555553 44688899999999999999986533 477877777652 2 34
Q ss_pred hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHhc-CcC--cCCchHHHHHHHH
Q 007424 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIGS-GAV--DGSGLKGLVSCLL 208 (604)
Q Consensus 135 k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~---~kaK~alLsaIGSiA~a-g~~--f~pyf~~lm~~L~ 208 (604)
+.++..||.||..+++.+++...+|++.|...+..++.... -+-+-.+..+++.++.. +.. -..|+..+++-+.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 67999999999999999988888999999999999997554 45566688888877642 321 1367899999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhh
Q 007424 209 GFLSSQDWAARKAAAEALWRLAVVEK-DAVPEF 240 (604)
Q Consensus 209 e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py 240 (604)
+.|.+++|+. +..+. ..++..+| +...+|
T Consensus 678 ~~w~~~~~~~--~~s~~-~~f~~~~G~~~~~~~ 707 (1204)
T 3a6p_A 678 SIWLSQDMHR--VLSDV-DAFIAYVGTDQKSCD 707 (1204)
T ss_dssp HHHSCHHHHH--HHHCH-HHHHHHHTSSCC--C
T ss_pred HHHccHHHHH--hhcCH-HHHHHHhCCCCCccc
Confidence 9999888884 33333 34445555 444333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.7e-05 Score=79.33 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH--HHHHHH
Q 007424 20 DTYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI--TKIINS 86 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L~--------pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L--~kIl~~ 86 (604)
+.++.|+..|-.|+..=+ ... ||+|+.+|. ++++.+++.+.-+|+.|+.+. .....+ ...+|.
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHH
Confidence 356778888888775321 223 677777665 567789999999999998641 111111 135677
Q ss_pred HHhh-ccCCChhHHHHHHHHHHhhhhhhcc--chhH---HHHHHHHHHHccCCCh---hHHHHHHHHHHHHHhh--cCCC
Q 007424 87 ITRN-FRDKNSALQATCISTVSSLSPRVGA--SAFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDA--AQDP 155 (604)
Q Consensus 87 Ivrr-LkDpDs~VR~Ac~~aLg~LAe~l~d--~~~~---sllkPL~eaL~~eqdk---~vQ~~AA~cLaalIE~--a~d~ 155 (604)
+++. ++.++..++..++.+|..|+.+..+ ..+. ..+++|...|....+. .++..|+.||..+.-. ..+.
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 254 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH
Confidence 7776 4567888999999999999985422 2222 2788999988533222 4888889999877642 1111
Q ss_pred ChhhHH--HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 156 DAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 156 i~~yL~--~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
....+. ..++.|+++|.+.+..++..++.+|+-++.-......++ ...+|.|.+.|.+.+-.+|+.|+.+|..|+.
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 112221 268899999999999999988888887763111111122 2368999999999999999999999999998
Q ss_pred HcC
Q 007424 232 VEK 234 (604)
Q Consensus 232 ~~g 234 (604)
.-+
T Consensus 335 ~~~ 337 (354)
T 3nmw_A 335 NRP 337 (354)
T ss_dssp TCC
T ss_pred CCH
Confidence 544
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=88.94 Aligned_cols=185 Identities=7% Similarity=-0.034 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc--C---
Q 007424 60 RKECIHVIATLSNSHNLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT--E--- 132 (604)
Q Consensus 60 RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~--e--- 132 (604)
||++--+|-.++... -.+-++.+++.+.+.+.. ++...++||+.++|++++.+.+.....++..++..|.. +
T Consensus 430 ~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~ 508 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508 (1049)
T ss_dssp HHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence 555555666665322 123345556666666653 56789999999999999876432122245555555432 1
Q ss_pred ---CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCcCc--------CCch
Q 007424 133 ---QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVD--------GSGL 200 (604)
Q Consensus 133 ---qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag~~f--------~pyf 200 (604)
..+.++..+++++.++.+-... ..+||+.+++.|+..|.+++..++.++..++..++. .+..+ .||+
T Consensus 509 ~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 509 GKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 2333555677888766654322 237999999999999999889999999999999886 33333 3999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhhHHHH
Q 007424 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLK 246 (604)
Q Consensus 201 ~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~~~i~ 246 (604)
+.++..|...+..-+-..+....++++.|+...+ +...+|....+.
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~ 635 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999998887666667788999999999887 457777665443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=79.71 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhh--hcccccH--HHHHHHH
Q 007424 21 TYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--HNLSPYI--TKIINSI 87 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~--------pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~--h~i~p~L--~kIl~~I 87 (604)
..+.|+..|-.|+..=+ ... ||+|+.+|. ++++.++..+.-+|+.|+.+ ......+ ...+|.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 46777788888775422 122 666666665 56678999999999999764 1111111 2357778
Q ss_pred Hhhc-cCCChhHHHHHHHHHHhhhhhhcc--chhH---HHHHHHHHHHccCCCh---hHHHHHHHHHHHHHhh--cCCCC
Q 007424 88 TRNF-RDKNSALQATCISTVSSLSPRVGA--SAFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDA--AQDPD 156 (604)
Q Consensus 88 vrrL-kDpDs~VR~Ac~~aLg~LAe~l~d--~~~~---sllkPL~eaL~~eqdk---~vQ~~AA~cLaalIE~--a~d~i 156 (604)
++.| +.++..++..++.+|+.|+.+..+ ..+. ..+++|...|....+. .++..|+.||..+.-. ..+..
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 8864 556788999999999999985432 2222 2788999888533322 4888899999877642 11111
Q ss_pred hhhHH--HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 157 AGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 157 ~~yL~--~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
...+. ..+|.|+++|.+.++.++..++.+|+-++........++ ...+|.|.+.|.+.+..+|+.|+.+|..|+..
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 22222 268899999999999999999999988773221211222 23689999999999999999999999999875
Q ss_pred cC
Q 007424 233 EK 234 (604)
Q Consensus 233 ~g 234 (604)
-+
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 43
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=85.67 Aligned_cols=228 Identities=11% Similarity=0.014 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHhhcCC---------CChHHHHHhhhhc-----CCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHH
Q 007424 21 TYSQAAKELDSIAATVDP---------TLLPTFLSCILST-----NSSDKPGVRKECIHVIATLSNSH-NLSPYITKIIN 85 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~p---------e~ip~fL~~L~e~-----~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~ 85 (604)
....|+-.|-.+++.+.. +.+|.++..|..- ...+.|.+|..++.++|..++-. .=..||+.+|+
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~ 538 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIE 538 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 455666666777777653 2355555554332 22456788999988888877755 33468999999
Q ss_pred HHHh--hccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---c---CC--C----------------hhHHH
Q 007424 86 SITR--NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---T---EQ--D----------------TNAQV 139 (604)
Q Consensus 86 ~Ivr--rLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~---eq--d----------------k~vQ~ 139 (604)
.++. ++.+++..||.+|+.++..|++.+.. ....++.+++..|. . ++ + -.-|.
T Consensus 539 ~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 617 (980)
T 3ibv_A 539 YFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQL 617 (980)
T ss_dssp HHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHH
T ss_pred HHhccccccCCChhHHHHHHHHHHHHHHHhhH-HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHH
Confidence 9999 99999999999999999999998843 12226666666652 1 11 0 12477
Q ss_pred HHHHHHHHHHhhcCCC---ChhhHHHHHH----HHHHHhcCC----chhHH-HHHHHHHHHHHhcCcC----cC---Cch
Q 007424 140 GAALCLAATIDAAQDP---DAGKLGRMEV----RLERLLKSE----VFKAK-AAGLVVVGSVIGSGAV----DG---SGL 200 (604)
Q Consensus 140 ~AA~cLaalIE~a~d~---i~~yL~~L~~----RL~klL~s~----~~kaK-~alLsaIGSiA~ag~~----f~---pyf 200 (604)
.-.-|+..++...+.+ ...|+..|++ ++.+++... .-.++ ..++.+||.++..=.. .. ..|
T Consensus 618 ~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f 697 (980)
T 3ibv_A 618 YLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASF 697 (980)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHH
Confidence 7888888888886542 2356655554 455666432 11122 1466778887752111 12 356
Q ss_pred HHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 201 KGLVSCLLGFLS--SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 201 ~~lm~~L~e~L~--s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
..+++.+...|. ..+..+|-+++-++..+....|+.+.||....++.|=
T Consensus 698 ~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 698 NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 677777777776 5789999999999999999999888888888777665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00098 Score=78.39 Aligned_cols=198 Identities=10% Similarity=0.096 Sum_probs=122.6
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHH--HhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchh
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvL--ae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~ 118 (604)
+..++..|.+. ++..|..+..+||.+ ..+. ..-+..|+..+.. |.+..||++++.+||.+.-.- +
T Consensus 474 ~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn--~~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g~--~-- 540 (963)
T 4ady_A 474 YEALKEVLYND----SATSGEAAALGMGLCMLGTGK--PEAIHDMFTYSQE---TQHGNITRGLAVGLALINYGR--Q-- 540 (963)
T ss_dssp HHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTC--G--
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCC--HHHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCCC--h--
Confidence 56666666532 235677777777776 2222 1223455555443 344567777888888663221 1
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCC
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS 198 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~p 198 (604)
..+..|++.|..+.++.+..+|++++.-..-+.++ ...+++|+..+. ++.+-.+|.+++-+||-|. .|..
T Consensus 541 -e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~-~g~~--- 610 (963)
T 4ady_A 541 -ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVL-LRDY--- 610 (963)
T ss_dssp -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT-SSSC---
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhc-cCCH---
Confidence 25777788886677888888888887655544444 223333333332 3445557777777777432 3321
Q ss_pred chHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GLKGLVSCLLGFL-SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf~~lm~~L~e~L-~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..++.+.+.| .+.||.+|..|+.+||.+...-|. ..++..|+..-.|....||..|..||...
T Consensus 611 ---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 611 ---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp ---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 2245555544 468999999999999987643221 34455666666799999999999999887
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00083 Score=75.30 Aligned_cols=252 Identities=13% Similarity=0.103 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHHHHhhcC------CCChHHHHHhhh-hc-------------CCCCCCchhHHHHHHHHHHHhhh---
Q 007424 18 DRDTYSQAAKELDSIAATVD------PTLLPTFLSCIL-ST-------------NSSDKPGVRKECIHVIATLSNSH--- 74 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~------pe~ip~fL~~L~-e~-------------~ss~kp~~RKaaI~lLGvLae~h--- 74 (604)
|.+..+.|+..|-.|+.+=+ ...||+|+..|. ++ ....++.+++.+.-+|..|+...
T Consensus 147 ~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~ 226 (584)
T 3l6x_A 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226 (584)
T ss_dssp SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH
Confidence 45567777777777765311 123688887762 11 12334688999999999997543
Q ss_pred --ccccc---HHHHHHHHHhhc--cCCChhHHHHHHHHHHhhhhhhcc-----------------------c-h----hH
Q 007424 75 --NLSPY---ITKIINSITRNF--RDKNSALQATCISTVSSLSPRVGA-----------------------S-A----FV 119 (604)
Q Consensus 75 --~i~p~---L~kIl~~IvrrL--kDpDs~VR~Ac~~aLg~LAe~l~d-----------------------~-~----~~ 119 (604)
.|..+ ++.++..+...+ .+++..+.+-|+.+|..|+..+.. . . .+
T Consensus 227 R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~ 306 (584)
T 3l6x_A 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306 (584)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGS
T ss_pred HHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhc
Confidence 22211 233333333332 346667888889999888866421 0 0 11
Q ss_pred -HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---ChhhH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Q 007424 120 -TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 120 -sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~---i~~yL--~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag 193 (604)
..+++|+..|....++.++..|+.||..++-+-... +...+ ...+|.|++||.+++..++..+..+|+-++.-.
T Consensus 307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 257788888854567889999999999998642111 11122 346889999999999999999999999888532
Q ss_pred cCcCCchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHHHcCcchhh-----hhhHHHHHHHhccCcchhHHH
Q 007424 194 AVDGSGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAVVEKDAVPE-----FKGKCLKIFESKRFDKVKVVR 260 (604)
Q Consensus 194 ~~f~pyf~~lm~~L~e~L~s~--------Dw~lRkaAaDaLg~LA~~~ge~f~p-----y~~~~i~~Le~cRfDKvK~VR 260 (604)
..-...-...||.|.+.|.+. .-.+...|+-+|+.|...-.+...- ....++.+|++.. ++.+.++
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k 465 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVR 465 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHH
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHH
Confidence 211122356889999999765 3577888888888876532221111 1133455555432 2445555
Q ss_pred HHHHHHHHHH
Q 007424 261 EVMNKMIEAW 270 (604)
Q Consensus 261 da~~~AL~~w 270 (604)
.|+.---.+|
T Consensus 466 ~Aa~vL~nl~ 475 (584)
T 3l6x_A 466 AAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444455
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0011 Score=77.86 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=89.4
Q ss_pred CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 39 TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 39 e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
+.++.++..|.. +.+|.+|..++.++|..+.|- . ..-+++||..+. .|++..||++|+.+||-++-.- +
T Consensus 541 e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~~g~---~ 610 (963)
T 4ady_A 541 ELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVLLRD---Y 610 (963)
T ss_dssp GGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTSSS---C
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhccCC---H
Confidence 345555555543 234555666555555554443 1 112233333222 3555566666666666543221 1
Q ss_pred hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--cC
Q 007424 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG--AV 195 (604)
Q Consensus 118 ~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag--~~ 195 (604)
..++.+++.|....++.+..+|++||.-+.-+-+. ++++.-|.+++++++..++..++-++|-|- +| .+
T Consensus 611 --e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig-~gtnna 681 (963)
T 4ady_A 611 --TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL-IQQTEK 681 (963)
T ss_dssp --SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS-TTCCTT
T ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh-cCCccc
Confidence 13455555555555666666776666655533222 444444555555566666655555555322 22 12
Q ss_pred cCCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHH
Q 007424 196 DGSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLA 230 (604)
Q Consensus 196 f~pyf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA 230 (604)
..|.+..++..|..++.+ +|-.+|-.|+-+.|-|-
T Consensus 682 ~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 682 LNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 235666666666666653 46666666666666654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0047 Score=65.28 Aligned_cols=234 Identities=11% Similarity=0.104 Sum_probs=137.0
Q ss_pred HHHHHHHhhhcCCh--hHHHHHHHHHHHHHhhcCCCCh-----HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007424 6 KTSVNGLLNKLSDR--DTYSQAAKELDSIAATVDPTLL-----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP 78 (604)
Q Consensus 6 k~rvl~~L~KLsDr--DT~r~A~~eLD~lA~~L~pe~i-----p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p 78 (604)
|..++|-...+.+. |+.++--..-+.|...+-.+.| ..++.-+..-.++.+...||=+++.+-.++... .
T Consensus 24 k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~ 100 (355)
T 3tjz_B 24 KSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---E 100 (355)
T ss_dssp HHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---S
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---H
Confidence 45577777777665 5665432222223332223343 344444445566888899999999998887764 1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
..=-...++.+-++||++.+|..|..+|+.+.+.- +. .+.+++-.+| .+.++.|...|+.|...++.-.++
T Consensus 101 e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~----m~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe--- 172 (355)
T 3tjz_B 101 DVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDST----MLQAIERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD--- 172 (355)
T ss_dssp CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT----THHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH---
T ss_pred HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH----HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH---
Confidence 11145678999999999999999999999997542 22 2566666666 788999999999999999876543
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
.+...++.+..++.+.+..+...++.++--+..... ..+..+++.+.+.--.+.|.. +..|-.++....+..
T Consensus 173 -~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---~a~~kLv~~l~~~~l~~~~~q----~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 173 -VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---LAVSKMISKFTRHGLKSPFAY----CMMIRVASRQLEDED 244 (355)
T ss_dssp -HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHSSCCSCHHHH----HHHHHHHTCC-----
T ss_pred -HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---HHHHHHHHHHhcCCCcChHHH----HHHHHHHHHhccccc
Confidence 455677788899988887776555555554443221 123344555444211246662 444444433332222
Q ss_pred hhhhhHHHHHHHhccCcchhH
Q 007424 238 PEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 238 ~py~~~~i~~Le~cRfDKvK~ 258 (604)
...+..+++.|+.+--.+-..
T Consensus 245 ~~~~~~~~~~l~~~L~~~~~a 265 (355)
T 3tjz_B 245 GSRDSPLFDFIESCLRNKHEM 265 (355)
T ss_dssp ------------CCCCCSSHH
T ss_pred hhhHHHHHHHHHHHHcCCChH
Confidence 223456677777665444333
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0012 Score=73.94 Aligned_cols=241 Identities=11% Similarity=0.026 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHhhcC------CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhc
Q 007424 21 TYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNF 91 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~------pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrL 91 (604)
..|-++..||.+-++=| ...||.|+.+|. +.++..+.+|..+|..+|.+. ...-. -...||.+++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~----s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL 99 (584)
T 3l6x_A 24 HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLG----FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL 99 (584)
T ss_dssp ----------------CCCCCCCCCCHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG
T ss_pred cccchHHHHHHHHhcCCCCCCcccccHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH
Confidence 45677888999877522 233899998886 345678888999999998654 11111 124578999999
Q ss_pred cCCChhHHHHHHHHHHhhhhhh-ccc--hh--HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRV-GAS--AF--VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEV 165 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l-~d~--~~--~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-~~yL~~L~~ 165 (604)
+.++..|+..|++||+.|+..- .+. .+ ...++||+..|....+..+|..|+.||..+--. +.. ...+..-+|
T Consensus 100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~~alp 177 (584)
T 3l6x_A 100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVDHALH 177 (584)
T ss_dssp GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhHHHHhccHH
Confidence 9999999999999999999741 111 11 127999999995446778899999999877542 221 122233345
Q ss_pred HHHHHh------------------cCCchhHHHHHHHHHHHHHhcCcCc-------CCchHHHHHHHHhhhc--CCcHHH
Q 007424 166 RLERLL------------------KSEVFKAKAAGLVVVGSVIGSGAVD-------GSGLKGLVSCLLGFLS--SQDWAA 218 (604)
Q Consensus 166 RL~klL------------------~s~~~kaK~alLsaIGSiA~ag~~f-------~pyf~~lm~~L~e~L~--s~Dw~l 218 (604)
-|+++| ...+..++..+..+|..++...... ....+.+|..|...+. ..+...
T Consensus 178 ~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~ 257 (584)
T 3l6x_A 178 ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257 (584)
T ss_dssp HHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHH
T ss_pred HHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHH
Confidence 555544 1224567777777888777543211 1112234444443331 234445
Q ss_pred HHHHHHHHHHHHHHc---------------------------C-cch-hh-hhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 219 RKAAAEALWRLAVVE---------------------------K-DAV-PE-FKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 219 RkaAaDaLg~LA~~~---------------------------g-e~f-~p-y~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
...|+-+|..|+... | +.+ .+ .....+.+|..+ .-+.|++.+..||+
T Consensus 258 ~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s---~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES---KTPAILEASAGAIQ 334 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 555666665555321 0 100 00 012236667655 24789999999997
Q ss_pred HH
Q 007424 269 AW 270 (604)
Q Consensus 269 ~w 270 (604)
-+
T Consensus 335 nL 336 (584)
T 3l6x_A 335 NL 336 (584)
T ss_dssp HH
T ss_pred HH
Confidence 77
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0087 Score=60.34 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=152.8
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l 113 (604)
+.+.+..++..|. ..++-++-.++.+|+.+-... .-...+.++++.|++.+++.|--|--=|.++++.|-+..
T Consensus 31 ~e~~l~~L~~LL~----dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAG----EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHh----ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 3444666666665 446689999999999986663 445689999999999999999877666667777766654
Q ss_pred cc--chhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 114 GA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 114 ~d--~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.= ..+.-+..-|.+.+ ..++.-...-||-.|..+ .+....++++..++.++++.+.++|.+.+.++-.+++
T Consensus 107 pL~~~~y~Kl~~aL~dli-k~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLL-ESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CBCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 21 11222455555555 477777888888877777 3334468899999999999999999999999998886
Q ss_pred cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc-CcchhhhhhHHHHHHHhcc-CcchhHHHHHHHHH
Q 007424 192 SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE-KDAVPEFKGKCLKIFESKR-FDKVKVVREVMNKM 266 (604)
Q Consensus 192 ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~-ge~f~py~~~~i~~Le~cR-fDKvK~VRda~~~A 266 (604)
-.++ ...++.+..-+.++|.++|-.++.-|.++|-.|+... .+.+.+-...+++...+.= .-+-+.+|+-|-.-
T Consensus 180 ~S~D-~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 180 SSAD-SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp GCSS-CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3322 2345667788999999999999999999999988832 2333333345555555444 33444566655443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0017 Score=77.18 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=128.8
Q ss_pred cccccHHHHHHHHHhhccCCC-------------------h---hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc-
Q 007424 75 NLSPYITKIINSITRNFRDKN-------------------S---ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT- 131 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpD-------------------s---~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~- 131 (604)
...|++.++++.++++++=|+ + ..-....++|..++.-..+.-+..++.-|-..+.+
T Consensus 384 ~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~ 463 (1023)
T 4hat_C 384 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1023)
T ss_dssp GGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC
Confidence 567999999999999988664 0 11112236665555443211111234444444433
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHhcCcCcCCchHHHHH
Q 007424 132 EQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKS-----EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVS 205 (604)
Q Consensus 132 eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL~~L~~RL~klL~s-----~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~ 205 (604)
+.+.....++++|+.++.++..+. ..++++.+++-|+.++++ +...++..+.-+||....-=.....|++.+|.
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~ 543 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 357888999999999999986644 457899999999999875 23344445556666544311223478999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch--------hhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 206 CLLGFLSSQDWAARKAAAEALWRLAVVEKDAV--------PEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 206 ~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f--------~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
.|.+++.++.-.+..+||++|..|+...++.+ .||.+.++..+..+--+=-..-+..+.+|+..+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999988888899999999999999766544 478888777776643221123334555555544
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0014 Score=73.12 Aligned_cols=202 Identities=11% Similarity=0.003 Sum_probs=139.1
Q ss_pred HHHHHHHhhhcCChh-------HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007424 6 KTSVNGLLNKLSDRD-------TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP 78 (604)
Q Consensus 6 k~rvl~~L~KLsDrD-------T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p 78 (604)
|.-++-+|++.+|== -+-.|+|.|-.+ .+||++ +..+...+ .....+.|.+|-.+++.|-.+ .. ++..
T Consensus 222 RLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL-~D-LL~~ 296 (800)
T 3oc3_A 222 KIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL-KE-FVED 296 (800)
T ss_dssp HHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT-GG-GCCC
T ss_pred HHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH-HH-HHHH
Confidence 444566788887622 456677777777 999988 55544444 345667799999999999999 22 3322
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHH-HHHHHHhhcCCCCh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAAL-CLAATIDAAQDPDA 157 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~-cLaalIE~a~d~i~ 157 (604)
|+.+++.++.+|+|+|=-||.+|+.+|--++ . ......++.-|.+.|.+..|-.+-.++.+ -|++++..-...
T Consensus 297 -Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~-p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a-- 370 (800)
T 3oc3_A 297 -KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--I-TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL-- 370 (800)
T ss_dssp -HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--C-SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--
T ss_pred -HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--c-hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--
Confidence 9999999999999999999999999999998 1 12344578888888853333233333333 346665542211
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHH-HhhhcCCcHHHHHHHHHHHH
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCL-LGFLSSQDWAARKAAAEALW 227 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L-~e~L~s~Dw~lRkaAaDaLg 227 (604)
...+.++|||.-.|.|+-..+|.+++.++..+. ...+++.+ +..|-+++-++|..+.++..
T Consensus 371 ~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 371 SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 112389999999999998889999888876433 22344333 55666788888888888774
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0046 Score=71.37 Aligned_cols=188 Identities=8% Similarity=0.041 Sum_probs=121.4
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--HHHHHHHHHHccCCCh--hHHHHHHHHHHHHHhhcCCCC
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV--TMLKLLSDALFTEQDT--NAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--sllkPL~eaL~~eqdk--~vQ~~AA~cLaalIE~a~d~i 156 (604)
.++|.++..++.+++.+|..++++++.|+..-.... +. ..++||+..|...... .++..||.||+++.-..+...
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 477888888999999999999999999997732111 11 2899999999643332 278899999999986543221
Q ss_pred h--hh-HHHHHHHHHHHhcC-Cch-------------hHHHHHHHHHHHHHhcC----cCc-CCchH--HHHHHHHhhhc
Q 007424 157 A--GK-LGRMEVRLERLLKS-EVF-------------KAKAAGLVVVGSVIGSG----AVD-GSGLK--GLVSCLLGFLS 212 (604)
Q Consensus 157 ~--~y-L~~L~~RL~klL~s-~~~-------------kaK~alLsaIGSiA~ag----~~f-~pyf~--~lm~~L~e~L~ 212 (604)
. .| ....++.|+++|.. +.. ..+--++-|++-+|... +.. .-.+. ..++.|.++|.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 1 11 12678889999973 221 12445566777777643 111 11232 47899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHc-C--cchh----hhhhHHHHHH-HhccCcchhHHHHHHHHHHHHH
Q 007424 213 SQDWAARKAAAEALWRLAVVE-K--DAVP----EFKGKCLKIF-ESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 213 s~Dw~lRkaAaDaLg~LA~~~-g--e~f~----py~~~~i~~L-e~cRfDKvK~VRda~~~AL~~w 270 (604)
+++..+|++|+++|..|+... + ..|. |-..+.++.| .=++. .-..+|.+|.-||--+
T Consensus 617 s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnL 681 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANI 681 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 999999999999999999732 1 1232 1111123333 22233 4557777777777655
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.017 Score=56.65 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=132.6
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc---c--CCChhHHHHHHHHHHHHH
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---T--EQDTNAQVGAALCLAATI 149 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~---~--eqdk~vQ~~AA~cLaalI 149 (604)
..+.|=..++-.+++.|-|.-..||.-+...+..+++... . +..|+..-|+ . +.-+-.|. -|.++..+.
T Consensus 25 ~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~--e---l~epl~~kL~vm~~ksEaIpltqe-Ia~a~G~la 98 (253)
T 2db0_A 25 IMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE--D---LYEPMLKKLFSLLKKSEAIPLTQE-IAKAFGQMA 98 (253)
T ss_dssp HHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG--G---GHHHHHHHHHHHHHHCCSHHHHHH-HHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH--H---HHHHHHHHHHHHHhhcccCchHHH-HHHHHhHHH
Confidence 4556677788889999988888999999999999888873 2 4444444433 2 22333343 233344333
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
.-- .+.+..+.|-|+.=+.-.+.|+|--.-.+++-|+.+... .+..+..-+...|++.|-.=|.+|..-|+.|
T Consensus 99 ~i~----Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~---l~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 99 KEK----PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM---LMASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp HHC----HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred HhC----HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 321 246677888888888777889998888888888776532 2234455556667888988899999999988
Q ss_pred HHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 230 AVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 230 A~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+.....++.||..+.+..|. ||-..||-++.|+|.-+-.++
T Consensus 172 Gen~~~yv~PfLprL~aLL~----D~deiVRaSaVEtL~~lA~~n 212 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLH----DGDEIVRASAVEALVHLATLN 212 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGG----CSSHHHHHHHHHHHHHHHTSC
T ss_pred hccCccccCcchHHHHHHHc----CcchhhhHHHHHHHHHHHHcC
Confidence 88877999999888888887 999999999999998775443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0045 Score=61.63 Aligned_cols=166 Identities=9% Similarity=0.040 Sum_probs=110.8
Q ss_pred HHHHHhhccCCCh--hHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 84 INSITRNFRDKNS--ALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 84 l~~IvrrLkDpDs--~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
+|.+++.|+.+|+ .|+..++.++..|+..-.+. .+. ..++||+..| ...++.+|..|+.||..+.-.-++ -.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~-nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDND-NK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH-HH
Confidence 6788889998888 88888888999888653221 111 1688999888 567889999999999988642111 11
Q ss_pred hhHHH--HHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc----------------CCcHHH
Q 007424 158 GKLGR--MEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS----------------SQDWAA 218 (604)
Q Consensus 158 ~yL~~--L~~RL~klL~-s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~----------------s~Dw~l 218 (604)
..+.+ -+|.|+++|. +++..++..+.+++..++.....-.......||.|.+.+. ..+-.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22222 6788999997 5688899998889998875432111223345677766442 136689
Q ss_pred HHHHHHHHHHHHHHc---Ccchhhh---hhHHHHHHHhc
Q 007424 219 RKAAAEALWRLAVVE---KDAVPEF---KGKCLKIFESK 251 (604)
Q Consensus 219 RkaAaDaLg~LA~~~---ge~f~py---~~~~i~~Le~c 251 (604)
+..|+.+|..|+... ...+... .+..+.+|..|
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence 999999999998632 2333322 24556666665
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.19 E-value=9.2e-05 Score=74.35 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=84.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHc
Q 007424 51 TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (604)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~ 130 (604)
-..++++.+|..+...|+ + +.+.+.++|+|..||.+++..+ .. +++..|.
T Consensus 82 L~~D~~~~VR~~aA~~L~---------~------~~L~~ll~D~d~~VR~~aA~~l---~~------------~~L~~L~ 131 (244)
T 1lrv_A 82 LIRDSDEVVRRAVAYRLP---------R------EQLSALMFDEDREVRITVADRL---PL------------EQLEQMA 131 (244)
T ss_dssp GTTCSSHHHHHHHHTTSC---------S------GGGGGTTTCSCHHHHHHHHHHS---CT------------GGGGGGT
T ss_pred HccCcCHHHHHHHHHHCC---------H------HHHHHHHcCCCHHHHHHHHHhC---CH------------HHHHHHH
Confidence 345667788887775421 1 2456668888888888877743 11 1223344
Q ss_pred cCCChhHHHHHHHHHHH-HHhh-cCCCChhhH-----HHHHH-HHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHH
Q 007424 131 TEQDTNAQVGAALCLAA-TIDA-AQDPDAGKL-----GRMEV-RLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG 202 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaa-lIE~-a~d~i~~yL-----~~L~~-RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~ 202 (604)
.+.++.|+.+++..+.. .+.. +.|.. +.+ ..+.+ -|..++++++..++.+++..+ .
T Consensus 132 ~D~d~~VR~~aA~~l~~~~l~~l~~D~d-~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l----------~----- 195 (244)
T 1lrv_A 132 ADRDYLVRAYVVQRIPPGRLFRFMRDED-RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL----------R----- 195 (244)
T ss_dssp TCSSHHHHHHHHHHSCGGGGGGTTTCSC-HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC----------C-----
T ss_pred cCCCHHHHHHHHHhcCHHHHHHHHcCCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC----------C-----
Confidence 66677777766664310 0000 11111 000 00111 122444555555555544331 0
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 203 LVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 203 lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
.+.|...+.+++|++|.+++..|+ +..|... -|....||.++.++|.+
T Consensus 196 -~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 196 -GDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp -GGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred -HHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 134666778888999999888865 1334445 59999999999887654
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0069 Score=69.89 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=127.3
Q ss_pred CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCChh---HHHHHHHHHHhh
Q 007424 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSA---LQATCISTVSSL 109 (604)
Q Consensus 37 ~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpDs~---VR~Ac~~aLg~L 109 (604)
....+|+|+.++. +..+..|..++.+|+.++..- .+..+ -.++.++..|...... +|..|+.||+.|
T Consensus 455 eaGvIp~Lv~Ll~----S~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 455 RTELISFLKREMH----NLSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp TTTHHHHHHHHGG----GSCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 4444788777764 346789999999999997543 22222 3456677777765443 899999999998
Q ss_pred hhhhc-c---c--hhHHHHHHHHHHHccCCC------------hhH-HHHHHHHHHHHHhhcC---CCC-hhhHH--HHH
Q 007424 110 SPRVG-A---S--AFVTMLKLLSDALFTEQD------------TNA-QVGAALCLAATIDAAQ---DPD-AGKLG--RME 164 (604)
Q Consensus 110 Ae~l~-d---~--~~~sllkPL~eaL~~eqd------------k~v-Q~~AA~cLaalIE~a~---d~i-~~yL~--~L~ 164 (604)
.-..- . + .....++||++.|....+ +.. +.-|++||..+...-+ +.+ ...+. ..+
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 84321 0 0 112478999988841111 112 5578899888876532 112 22344 378
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhcCc----CcC-CchHH---HHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007424 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGA----VDG-SGLKG---LVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 165 ~RL~klL~s~~~kaK~alLsaIGSiA~ag~----~f~-pyf~~---lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~ 231 (604)
+.|..+|.+++..++.++..+|.-++.-.. .|. ..-+. -++.|..++.++|..+|.+|+-+|+.++.
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999986322 221 11112 37889999999999999999999999865
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.059 Score=54.81 Aligned_cols=190 Identities=12% Similarity=0.048 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCCh
Q 007424 60 RKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDT 135 (604)
Q Consensus 60 RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk 135 (604)
|.+.+..|-.....+ +.+. +...|-..|..-|.++++.|-...+.-.+ .... +++=+..-+ -+.+.
T Consensus 32 ~~e~v~~L~~~~~~~-~~~~-------~~~~lfs~d~k~~~~ale~L~~~l~~~~~-~~~~~lDll~kw~~lr~-~d~N~ 101 (266)
T 2of3_A 32 TDEHISQLQTLLGNQ-AKVS-------LMSQLFHKDFKQHLAALDSLVRLADTSPR-SLLSNSDLLLKWCTLRF-FETNP 101 (266)
T ss_dssp CHHHHHHHHHHHHTT-BCHH-------HHHHHTCSCHHHHHHHHHHHHHHHHHCHH-HHHHTHHHHHHHHHHHT-TSCCH
T ss_pred CHHHHHHHHHHHHHh-ccHH-------HHHHhcCCCHHHHHHHHHHHHHHhhhChH-HHHHHHHHHHHHHHHHH-hCCCH
Confidence 556665444433322 3333 34456677888888888777765443211 1111 222222233 36788
Q ss_pred hHHHHHHHHHHHHHhhc---CCCChhh-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007424 136 NAQVGAALCLAATIDAA---QDPDAGK-LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (604)
Q Consensus 136 ~vQ~~AA~cLaalIE~a---~d~i~~y-L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L 211 (604)
.+...+.-.|..+++.+ ++...+| ...++|-|+.-|.++.-++|.++..++..+..+.. ...+.+.+.+.+
T Consensus 102 ~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ 176 (266)
T 2of3_A 102 AALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDAL 176 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHH
Confidence 88888888888887775 3445566 57899999999988888888888888877665421 124778888899
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcCcchhhhh---hHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 212 SSQDWAARKAAAEALWRLAVVEKDAVPEFK---GKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 212 ~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~---~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
.+-+|-+|-..++.|+.+-...|-...-+. ..+.+.|+ |+-..||++|..++.
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~----D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG----DKDVNVRNAAINVLV 232 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG----CSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 999999999999999999988884333344 45555666 999999999988876
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00092 Score=75.61 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=85.2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch-hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC--
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-- 156 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~-~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-- 156 (604)
+|+|.| +.|+.+|+.+|..||.||+.|++.-.... +. ..+.|++..++.+.+..|+..|+.||..+....++.+
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 445544 34788888888888888888875421111 11 1677777776677777888888888877765543332
Q ss_pred -------hhhHHHHHHHHHHHhcCC--c------------hhHHHHHHHHHHHHHhcCcCcCCc--hHHHHHHHHhhhcC
Q 007424 157 -------AGKLGRMEVRLERLLKSE--V------------FKAKAAGLVVVGSVIGSGAVDGSG--LKGLVSCLLGFLSS 213 (604)
Q Consensus 157 -------~~yL~~L~~RL~klL~s~--~------------~kaK~alLsaIGSiA~ag~~f~py--f~~lm~~L~e~L~s 213 (604)
.+.|-.++.++...+... . +..-..++.++.+++........+ -...++.|..+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 222333333333322211 0 011123556666666433221101 12456666666643
Q ss_pred ---CcHHHHHHHHHHHHHHHH
Q 007424 214 ---QDWAARKAAAEALWRLAV 231 (604)
Q Consensus 214 ---~Dw~lRkaAaDaLg~LA~ 231 (604)
....++.+|+++|+.+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHhc
Confidence 247899999999999876
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0033 Score=74.53 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=109.4
Q ss_pred hHHHH-HHHHHHHHHhhc-CCCChHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--c-ccccHHHHHHHHHhhccC
Q 007424 20 DTYSQ-AAKELDSIAATV-DPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNFRD 93 (604)
Q Consensus 20 DT~r~-A~~eLD~lA~~L-~pe~ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~-i~p~L~kIl~~IvrrLkD 93 (604)
|=++. |...|..|+... +++.++.++..|.+... ++.| +|...+..+-++.--| . -..+-.+|+.+|++.|.|
T Consensus 776 eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D 854 (997)
T 1vsy_5 776 ALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYN 854 (997)
T ss_dssp HHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTC
T ss_pred HHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC
Confidence 33455 566677777655 44458999999988766 6788 9999988888876656 3 334456899999999999
Q ss_pred CC-hhHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHHccCCCh---------------hHHHHHHHHHHHHHhhcCCCC
Q 007424 94 KN-SALQATCISTVSSLSPRV-GASAFVTMLKLLSDALFTEQDT---------------NAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 94 pD-s~VR~Ac~~aLg~LAe~l-~d~~~~sllkPL~eaL~~eqdk---------------~vQ~~AA~cLaalIE~a~d~i 156 (604)
+. .-||++|+.+|+-|-... .. ..+..++..+...-.+ ...-||.++|.|+|.+.+..+
T Consensus 855 ~q~~EVRe~Aa~tLsgll~c~~~~----~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~v 930 (997)
T 1vsy_5 855 EQFVEVRVRAASILSDIVHNWKEE----QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVF 930 (997)
T ss_dssp SSCHHHHHHHHHHHHHHHHSCCSH----HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCS
T ss_pred CccHHHHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99 999999999999886553 11 1122344433211101 244689999999999998876
Q ss_pred --hhhHHHHHHHHHHHhcCCc
Q 007424 157 --AGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 157 --~~yL~~L~~RL~klL~s~~ 175 (604)
.+++|+++..|.....+++
T Consensus 931 P~P~w~P~~l~~La~~~~~~~ 951 (997)
T 1vsy_5 931 PLPPWIPKNLSNLSSWARTSG 951 (997)
T ss_dssp SCCTHHHHHHHHHHTTSSSCS
T ss_pred CCCcccHHHHHHHHHHhCCCC
Confidence 6799999988888887754
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.16 Score=51.26 Aligned_cols=183 Identities=10% Similarity=0.111 Sum_probs=140.9
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---hhH-HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---~~~-sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i 156 (604)
+..+..+...|.|-|+.|+-.++.+++.+-..+.+. ... -++.-++..+ -+.|..+...|.-||-.++++.+ ..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vp-L~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVP-MG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCC-BC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCC-CC
Confidence 346678888999999999999999999887775221 111 1555555555 46677899999999999999753 22
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-- 234 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-- 234 (604)
.+.+.+++.-|..++++++--..-.+...+|.+ .+ ..+ ...++..|...+.+.|.++..+|+-+|-.||...+
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv---~~~-~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP---LED-SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---SCC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---ccc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 367789999999999988888888888888876 21 112 35678888888889999999999999999999776
Q ss_pred cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 235 DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 235 e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
+.+.+....+-..|. -+-++++|-|..+|.-+=..|
T Consensus 185 ~i~~~I~~eI~elL~----~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQ----NDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCGGGTTTTHHHHHT----CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCc
Confidence 577777777788887 447899999888888774443
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.22 Score=53.24 Aligned_cols=238 Identities=17% Similarity=0.155 Sum_probs=148.4
Q ss_pred HHHHHHHhhhc---CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHH
Q 007424 6 KTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK 82 (604)
Q Consensus 6 k~rvl~~L~KL---sDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~k 82 (604)
+-|++..||.- +| +..-.-+..+..|+.+-+|+-++-||..|.+....++..+||.++--|+..|..+ ..++++
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~~~ 100 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELLLK 100 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 45677777665 44 4444455666667777788779999999998877778899999999888887655 456899
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chh------HH-----HHHHHHHHHccCCChhHHHHHHHHHHH
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAF------VT-----MLKLLSDALFTEQDTNAQVGAALCLAA 147 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~------~s-----llkPL~eaL~~eqdk~vQ~~AA~cLaa 147 (604)
+++.+...|+|.|+.|-..+..+.+.+=..+.+ .+. .. -+|--+-.++...+..+...+.=-+..
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 999999999999998877777777776533332 110 11 233333334444566777777777777
Q ss_pred HHhhc----CC---------CC--------hhhH---------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC
Q 007424 148 TIDAA----QD---------PD--------AGKL---------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG 197 (604)
Q Consensus 148 lIE~a----~d---------~i--------~~yL---------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~ 197 (604)
+|..- .+ ++ -+++ ..|+.+|++.|.++.... ..+..+|+|++.....-.
T Consensus 181 VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss-~~l~a~lnsLa~Iak~RP 259 (386)
T 3o2t_A 181 LIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISS-INLTTALGSLANIARQRP 259 (386)
T ss_dssp HHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH-HHHHHHHHHHHHHHHHSG
T ss_pred HHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHHHHhcH
Confidence 77431 01 00 0111 458889999998763322 344556666665443334
Q ss_pred CchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHH
Q 007424 198 SGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (604)
Q Consensus 198 pyf~~lm~~L~e~L~s~--------Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le 249 (604)
.|...++++|..+-.+- --.+||..=-.|..+... ..-.||..++...|+
T Consensus 260 ~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~--p~s~~~~~~I~~~L~ 317 (386)
T 3o2t_A 260 MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH--PASLEFQAQITTLLV 317 (386)
T ss_dssp GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS--GGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHH
Confidence 56777888887654321 122344444444443332 333477777777777
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.031 Score=55.53 Aligned_cols=149 Identities=11% Similarity=-0.004 Sum_probs=96.8
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~ 117 (604)
||.++..|.. .++++.++..+...|..++... -....+ ...||.+++.|+.++..|+..+++||..|+..-.+..
T Consensus 10 i~~lV~lL~s--~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEA--DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCS--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCC--CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 8888887752 2222267788888999988665 111111 2357999999999999999999999999987532211
Q ss_pred ----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHHHhc----------------CCch
Q 007424 118 ----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLK----------------SEVF 176 (604)
Q Consensus 118 ----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~-~yL~~L~~RL~klL~----------------s~~~ 176 (604)
....++||+..|....+..+|..|+.+|-.+-- .+... .....-+|.|..+|- ..+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~--~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS--NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--ChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 112899999999534577899999988877742 22221 122223444444431 1244
Q ss_pred hHHHHHHHHHHHHHhcC
Q 007424 177 KAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 177 kaK~alLsaIGSiA~ag 193 (604)
.++.-+.+++..++.++
T Consensus 166 ~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 67777777888777654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.026 Score=56.70 Aligned_cols=148 Identities=9% Similarity=-0.019 Sum_probs=111.1
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHH-HccCCChhHHHHHHHHHHHHHhhcCCCCh
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA-LFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~ea-L~~eqdk~vQ~~AA~cLaalIE~a~d~i~ 157 (604)
.++.+++...+..+|+.=.||-+|++.+|++ ... .-+-|++.. +..+.+-.|+..+|.++..++...+..
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 4888888888888888889999999999998 322 223444444 556778889999999999998744331
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 158 ~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
.+++.+.+.++++++.++-+++..+.--+.. ..+.-..+.++|.|.....++++.+||+.+.+|.-++..-++.+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 2556788899999999998877765421111 22334556788999998899999999999999999998766665
Q ss_pred hhh
Q 007424 238 PEF 240 (604)
Q Consensus 238 ~py 240 (604)
..+
T Consensus 214 ~~~ 216 (240)
T 3l9t_A 214 KIE 216 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.034 Score=55.88 Aligned_cols=174 Identities=10% Similarity=0.075 Sum_probs=117.3
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
.=..|+.+.+..+.+.|..-+-+.+..--.|..-+...- ...+.+|+..|..+..-.++..|+..|..+ .
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~-----~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---- 99 (240)
T 3l9t_A 30 MGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSND-----GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---- 99 (240)
T ss_dssp ----CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSC-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----
Confidence 445677788888888887766554333333333333321 136789999998655556887777766555 1
Q ss_pred CChhhHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 155 PDAGKLGRMEVRLER-LLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 155 ~i~~yL~~L~~RL~k-lL~s~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
-+..+++-+.. +-..+++.++..+..+++.++. ++.+ .+++.+.+.+.+++..+|.+|++.+---+..
T Consensus 100 ----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 100 ----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp ----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred ----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 12556666666 5667799999999999998875 5432 3677888888899999999999987532221
Q ss_pred cCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 233 EKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 233 ~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..|...-+.++.+|+..+-|+-.+||.|+.-+|.=+
T Consensus 170 --~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 170 --PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp --TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred --chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 234444577899999999999999999999888755
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0076 Score=67.33 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=149.8
Q ss_pred hhhcCChh--HHHHHHHHHHHHHhhcC--------CC-C-hHH-----HHHhhhhcCCCC-CCchhHHHHHHHHHHHhhh
Q 007424 13 LNKLSDRD--TYSQAAKELDSIAATVD--------PT-L-LPT-----FLSCILSTNSSD-KPGVRKECIHVIATLSNSH 74 (604)
Q Consensus 13 L~KLsDrD--T~r~A~~eLD~lA~~L~--------pe-~-ip~-----fL~~L~e~~ss~-kp~~RKaaI~lLGvLae~h 74 (604)
+..|=|.. +++-|+-.|..|.+.-. .. . ... .|.-+.|+.++. =.|+|+.|-.+||.+ .|
T Consensus 180 ~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL--~h 257 (800)
T 3oc3_A 180 SDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI--YP 257 (800)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH--TT
T ss_pred HHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH--Hh
Confidence 34444443 66666666666655432 11 2 222 233345665543 369999999999999 66
Q ss_pred cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007424 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (604)
Q Consensus 75 ~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d 154 (604)
.-.+ -+++-.+++.+..+...||+..+-+|.-+.+.+.+ +..+++.++..| .+.+-.|+..||.+|--++
T Consensus 258 Lp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA----- 327 (800)
T 3oc3_A 258 LIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFP----- 327 (800)
T ss_dssp TSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSC-----
T ss_pred CChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhc-----
Confidence 3333 35666666778888999999999999988554432 455777777777 6777789999988885555
Q ss_pred CChhhHHHHHHHHHHHhcCC-c-hhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 155 PDAGKLGRMEVRLERLLKSE-V-FKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 155 ~i~~yL~~L~~RL~klL~s~-~-~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
..+.++.|+..+-.+|.+- + ......++.+++.+..-..... -.+.++|.|-+||...-..+|+++..+|.++.
T Consensus 328 -~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~-~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-- 403 (800)
T 3oc3_A 328 -ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS-IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-- 403 (800)
T ss_dssp -CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC-CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--
T ss_pred -chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc-cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--
Confidence 2256777777777776542 1 2234556666666665332211 01289999999999999999999999998765
Q ss_pred cCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHH
Q 007424 233 EKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWK 271 (604)
Q Consensus 233 ~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK 271 (604)
.++.+.- ++.+.=++.-..||+. ++++|+
T Consensus 404 ~~~~LRL-------IFQNILLE~neeIl~l---S~~VWk 432 (800)
T 3oc3_A 404 EESIDFL-------VAEVVLIEEKDEIREM---AIKLLK 432 (800)
T ss_dssp CHHHHHH-------HHHHHHHCSCHHHHHH---HHHHHH
T ss_pred hhhHHHH-------HHHHHHhCCcHHHHHH---HHHHHH
Confidence 2233332 2223333555666665 667786
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.059 Score=64.84 Aligned_cols=241 Identities=15% Similarity=0.192 Sum_probs=146.7
Q ss_pred hHHHHHHHHHhhhcC------ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--
Q 007424 3 HALKTSVNGLLNKLS------DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-- 74 (604)
Q Consensus 3 ~eLk~rvl~~L~KLs------DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-- 74 (604)
+.+|+.+++.|.... +.--.....+.|-.|+..-=|+.-|-|+..|.+...+ ++..+..++.+|..+++..
T Consensus 88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 468889999887752 2223334455566666664345555555555544333 4567888999999998873
Q ss_pred --------------cccccHHHHHHHHHhhccCC-------------------ChhHHHHHHHHHHhhhhhhccchhH--
Q 007424 75 --------------NLSPYITKIINSITRNFRDK-------------------NSALQATCISTVSSLSPRVGASAFV-- 119 (604)
Q Consensus 75 --------------~i~p~L~kIl~~IvrrLkDp-------------------Ds~VR~Ac~~aLg~LAe~l~d~~~~-- 119 (604)
.+..+++.|++.+...|++. +..++.++++++..+..|+.- .+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~ 245 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITA 245 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHh
Confidence 23556778888888777652 345788899999888888521 111
Q ss_pred ---HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC-----CChhhH-HHHHHHHHHHhc-------CC-chh-H-H-
Q 007424 120 ---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD-----PDAGKL-GRMEVRLERLLK-------SE-VFK-A-K- 179 (604)
Q Consensus 120 ---sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d-----~i~~yL-~~L~~RL~klL~-------s~-~~k-a-K- 179 (604)
.++.-++. ++. ++.++..|+-||..++..-.+ .++..+ ...+.+++..+. +. ++. + +
T Consensus 246 ~~~~ll~~l~~-~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 246 ENCKLLEILCL-LLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTSHHHHHHHH-GGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred ccchHHHHHHH-HcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 13333443 332 566889999999999874221 112223 223445555542 11 121 1 1
Q ss_pred HHHHHHHHHHHh--cCc----CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C-cchhhhhhHHHHHH
Q 007424 180 AAGLVVVGSVIG--SGA----VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K-DAVPEFKGKCLKIF 248 (604)
Q Consensus 180 ~alLsaIGSiA~--ag~----~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~---g-e~f~py~~~~i~~L 248 (604)
.-++.++|.-.. .++ ...+.+..+++.|..|...++-.+-..+++....+.... . +.+.++....++++
T Consensus 323 ~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 323 CQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 114444443211 111 234788899999999999888888888888888777642 1 45677777777666
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.016 Score=65.46 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=91.5
Q ss_pred CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccH--HHHH-HHHHhhccCCChhHHHHHHHHHHhhhhhhc-
Q 007424 39 TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKII-NSITRNFRDKNSALQATCISTVSSLSPRVG- 114 (604)
Q Consensus 39 e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L--~kIl-~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~- 114 (604)
++|.|+|..|. ++++..|..|..+|+.|++.......+ .+++ +.|.+.|.|++..||.+|+.+|+.|+....
T Consensus 34 ~~i~Pll~~L~----S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVLKDLK----SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHHHHHS----SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHHHcC----CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 46777887764 678899999999999998765111111 2344 456677999999999999999999987642
Q ss_pred cc--hhH--HHHHHHHHHHcc-------------CCChh-------HHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHH
Q 007424 115 AS--AFV--TMLKLLSDALFT-------------EQDTN-------AQVGAALCLAATIDAAQDPDAGKL--GRMEVRLE 168 (604)
Q Consensus 115 d~--~~~--sllkPL~eaL~~-------------eqdk~-------vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~ 168 (604)
+. ... .+++||..+|-. ...+. +...+..+|-.++|+..+.. .++ ...++.|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~-~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH-EAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHTCHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHhcccHHHHH
Confidence 10 011 167777776620 01111 22234566677777644322 222 23556666
Q ss_pred HHhcCC---chhHHHHHHHHHHHHHh
Q 007424 169 RLLKSE---VFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 169 klL~s~---~~kaK~alLsaIGSiA~ 191 (604)
.+|.+. ...+..+++.++..+..
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 555322 34577788888887664
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0026 Score=63.83 Aligned_cols=129 Identities=14% Similarity=0.085 Sum_probs=72.5
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-----ch-----
Q 007424 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-----SA----- 117 (604)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-----~~----- 117 (604)
|.....++++.+|.++...|. + ..+...++|+++.||.+++..+ ...+.. ..
T Consensus 103 L~~ll~D~d~~VR~~aA~~l~---------~------~~L~~L~~D~d~~VR~~aA~~l---~~~~l~~l~~D~d~~VR~ 164 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRLP---------L------EQLEQMAADRDYLVRAYVVQRI---PPGRLFRFMRDEDRQVRK 164 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC---------T------GGGGGGTTCSSHHHHHHHHHHS---CGGGGGGTTTCSCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhCC---------H------HHHHHHHcCCCHHHHHHHHHhc---CHHHHHHHHcCCCHHHHH
Confidence 333345666777777666321 1 1233446777777777776532 211110 00
Q ss_pred --hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC
Q 007424 118 --FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (604)
Q Consensus 118 --~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~ 195 (604)
...+-.+++..|..+.++.|...++..| . .+.|..++++++..++.+++..+|
T Consensus 165 ~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l~-------- 219 (244)
T 1lrv_A 165 LVAKRLPEESLGLMTQDPEPEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHAS-------- 219 (244)
T ss_dssp HHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHSC--------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcCC--------
Confidence 0001223333444555555555555432 0 134777899999999988877754
Q ss_pred cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007424 196 DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (604)
Q Consensus 196 f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~ 228 (604)
.+.|.. |.+++|.+|.+|++.||.
T Consensus 220 --------~~~L~~-L~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 220 --------LEALRE-LDEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp --------HHHHHH-CCCCCHHHHHHHHCCC--
T ss_pred --------HHHHHH-ccCCCHHHHHHHHHHhCC
Confidence 134444 488999999999998874
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.31 Score=55.27 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=150.9
Q ss_pred HHHHhhhc-CChhHHHHHHHHHHHHHhhc--------------------------CCCChHHHHHhhhhcCCCCCCchhH
Q 007424 9 VNGLLNKL-SDRDTYSQAAKELDSIAATV--------------------------DPTLLPTFLSCILSTNSSDKPGVRK 61 (604)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~lA~~L--------------------------~pe~ip~fL~~L~e~~ss~kp~~RK 61 (604)
++..|.+= .|.|+.+.+++.|-.+...- .++.|+.++.+|. +.+-++|-
T Consensus 65 li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~----~~df~vR~ 140 (651)
T 3grl_A 65 LIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE----EFDFHVRW 140 (651)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT----CCCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc----CccHHHHH
Confidence 45555554 45667777777664432211 2333666666664 55668999
Q ss_pred HHHHHHHHHHhhh--ccccc---HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-chhHH---HHHHHHHHHccC
Q 007424 62 ECIHVIATLSNSH--NLSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAFVT---MLKLLSDALFTE 132 (604)
Q Consensus 62 aaI~lLGvLae~h--~i~p~---L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~~~~s---llkPL~eaL~~e 132 (604)
.++.+|.+|+... -+... -|.=++.++..|.|+.-.||..++-.|..|+..-.+ +...+ .+.+||..+-.|
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 9999999998766 12222 234578889999999999999999999999887644 33333 488999888544
Q ss_pred CC---hhHHHHHHHHHHHHHhhcCCCChhhHHH--HHHHHHHHhcCCc-h------hHHH--HHHHHHHHHHhcCcC---
Q 007424 133 QD---TNAQVGAALCLAATIDAAQDPDAGKLGR--MEVRLERLLKSEV-F------KAKA--AGLVVVGSVIGSGAV--- 195 (604)
Q Consensus 133 qd---k~vQ~~AA~cLaalIE~a~d~i~~yL~~--L~~RL~klL~s~~-~------kaK~--alLsaIGSiA~ag~~--- 195 (604)
.. -.+..-...+|..+...- ...-.|+.+ .+++|.++|+.+. . +.++ .++.+|+.+..-++.
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr~N-~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLKNN-NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred CCCccchhHHHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 32 112222233345555431 001235554 6677778886442 1 2333 255566655543221
Q ss_pred c---CCch--HHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcC---cchhhhh-------hHHHHHHHhccCcc-hh
Q 007424 196 D---GSGL--KGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEK---DAVPEFK-------GKCLKIFESKRFDK-VK 257 (604)
Q Consensus 196 f---~pyf--~~lm~~L~e~L~s~--Dw~lRkaAaDaLg~LA~~~g---e~f~py~-------~~~i~~Le~cRfDK-vK 257 (604)
. .-.+ ..+++.|.+.+... .-.+|..|+-+++.+.+--. +.|..+- ..++..|-+.-.+| --
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 1 0011 12577788887655 57788888888888765221 3443221 33444433332233 35
Q ss_pred HHHHHHHHHHHHH
Q 007424 258 VVREVMNKMIEAW 270 (604)
Q Consensus 258 ~VRda~~~AL~~w 270 (604)
.+|-|+...++.+
T Consensus 380 ~lR~Aa~~cl~ay 392 (651)
T 3grl_A 380 VLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6798888888877
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.095 Score=62.68 Aligned_cols=155 Identities=6% Similarity=-0.064 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhccC--CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc----CC---Chh-HHHHHHHHHHHHH
Q 007424 80 ITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT----EQ---DTN-AQVGAALCLAATI 149 (604)
Q Consensus 80 L~kIl~~IvrrLkD--pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~----eq---dk~-vQ~~AA~cLaalI 149 (604)
+.-|++.+.+.+.. ++...+.|+++|+|++|..+.......+++.++..|++ .. ++. +....++.+.+..
T Consensus 475 ~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~ 554 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP 554 (1073)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH
Confidence 34445555555443 45779999999999999766422233466666666652 11 122 2333345555555
Q ss_pred hhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-cCc--------CCchHHHHHHHHhhhcCCcHHHHH
Q 007424 150 DAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVD--------GSGLKGLVSCLLGFLSSQDWAARK 220 (604)
Q Consensus 150 E~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag-~~f--------~pyf~~lm~~L~e~L~s~Dw~lRk 220 (604)
+-+.. -.+||..++..|++.+..++-.++.++.+++..+.+-. ..+ .||++.++..+..+...=+-...-
T Consensus 555 ~wl~~-h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~ 633 (1073)
T 3gjx_A 555 RFLRA-HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH 633 (1073)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred HHHHh-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence 54321 24799999999999998888889999999999888633 222 478888888887776654555566
Q ss_pred HHHHHHHHHHHHcCc
Q 007424 221 AAAEALWRLAVVEKD 235 (604)
Q Consensus 221 aAaDaLg~LA~~~ge 235 (604)
.-.|++|.|+...|.
T Consensus 634 ~lyeav~~vi~~~p~ 648 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 789999999998874
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.93 E-value=1.4 Score=44.48 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHH
Q 007424 4 ALKTSVNGLLNKLSD--RDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT 81 (604)
Q Consensus 4 eLk~rvl~~L~KLsD--rDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~ 81 (604)
.-+-++...||.-.. .|..=..+.....++.+-+|.-+|-||.-+.+...+....+||.++.-|+.+|..+ ..+++
T Consensus 12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k--~~l~~ 89 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK--VELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHH
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 446677888876532 24444455555666666677778999999988766667789999999998888766 45788
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHH
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~ 161 (604)
++++.+...|+|.|+.|-.-+..+.+. +++.+|..+....+ +....-.+- +.+.
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~------------iY~~~l~~i~~~~~--~~~~~~~~W------------~~m~ 143 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGS------------IYKNGLQYLCSLME--PGDSAEQAW------------NILS 143 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHH------------HHHHHHHHHTTSSS--CCHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH------------HHHHHHHHHhcCCC--CcchHHHHH------------HHHH
Confidence 999999999999999876666655544 35555666642211 110011111 2234
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 162 ~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
.+=.+++.++++.+..+|-.++=.+-.++
T Consensus 144 ~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 144 LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 44456666777777777777776666665
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.8 Score=53.16 Aligned_cols=250 Identities=14% Similarity=0.146 Sum_probs=155.3
Q ss_pred HhhhcCChhHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC--CCCchh-HHHHHHHHHHHhhh----cccccH
Q 007424 12 LLNKLSDRDTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS--DKPGVR-KECIHVIATLSNSH----NLSPYI 80 (604)
Q Consensus 12 ~L~KLsDrDT~r~A~~eLD~lA~~L~p---e~-ip~fL~~L~e~~ss--~kp~~R-KaaI~lLGvLae~h----~i~p~L 80 (604)
..+| |.+....+...|..||- |.| +. +|.+|.-++++.++ -...+| .+++.+|..++..- ...+||
T Consensus 348 ~fSK--~~~~~~~~~~~l~~La~-l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl 424 (799)
T 1vsy_4 348 SQNK--NPDIANYYISCFAYLLE-LDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHI 424 (799)
T ss_dssp HTCS--SHHHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHH
T ss_pred hCcC--CcchHHHHHHHHHHHHh-cCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3455 66677888888888886 555 56 89999999999887 444554 56678888776544 345799
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc---------------------------------------------
Q 007424 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--------------------------------------------- 115 (604)
Q Consensus 81 ~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d--------------------------------------------- 115 (604)
..||...+-++-=.|+.--.++...+..++..+.=
T Consensus 425 ~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~ 504 (799)
T 1vsy_4 425 TNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNN 504 (799)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHH
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHH
Confidence 99999999999888887666666666666553320
Q ss_pred ------chhHHHHHHHHHHHc----cCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchh-HHHHHHH
Q 007424 116 ------SAFVTMLKLLSDALF----TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK-AKAAGLV 184 (604)
Q Consensus 116 ------~~~~sllkPL~eaL~----~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~k-aK~alLs 184 (604)
..+..++.-+++-++ ...+..+-.+-..++..+++.+++ +.+...+.++++...+..+. +..++-.
T Consensus 505 ~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~~n~~~~a~~~v~~ 581 (799)
T 1vsy_4 505 AFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFWSNDSFKEKDPNYE 581 (799)
T ss_dssp HHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHHSCSCCCSSSCCTH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 012223333333332 223334444444556666676665 66777888888877666332 2222222
Q ss_pred H----HHHHHhcCcCcCCchHHHHHHHHhhh----cC-------------Cc----HHHHHHHHHHHHHHHHHcCcchhh
Q 007424 185 V----VGSVIGSGAVDGSGLKGLVSCLLGFL----SS-------------QD----WAARKAAAEALWRLAVVEKDAVPE 239 (604)
Q Consensus 185 a----IGSiA~ag~~f~pyf~~lm~~L~e~L----~s-------------~D----w~lRkaAaDaLg~LA~~~ge~f~p 239 (604)
. +++++.+... .|..++|.|..-+ .+ .| |. +-+|+.+....|..+-+
T Consensus 582 L~~~~~~a~~~~~P~---~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~-----l~iL~~~v~~~g~~lL~ 653 (799)
T 1vsy_4 582 LVTIPLAALVRRNNG---LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLY-----LTALNDVLRNCHESLLE 653 (799)
T ss_dssp HHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHH-----HHHHHHHHTTTGGGGGT
T ss_pred HHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHH-----HHHHHHHHhcCcHHHHc
Confidence 2 4555554322 2444444444222 11 11 54 45666666677888889
Q ss_pred hhhHHHHHHHhccCcchhHHH--H----HHHHHHHHHHhCCCC
Q 007424 240 FKGKCLKIFESKRFDKVKVVR--E----VMNKMIEAWKQVPDL 276 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VR--d----a~~~AL~~wK~i~~~ 276 (604)
|++++++++.-+ ++|+|..+ . -+...|..+=.+-..
T Consensus 654 y~deL~~il~~~-~~~~k~~~~~~~~~~ll~~lL~sLt~~yp~ 695 (799)
T 1vsy_4 654 YSDELITFMKYL-YDNVTNPPLDVITSIVIHSALATLCTTEIT 695 (799)
T ss_dssp THHHHHHHHHHH-HHSCCCHHHHHHHTTHHHHHHHHHHCCBCC
T ss_pred cHHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHhhheeec
Confidence 999999999988 66766655 5 455666666555444
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.87 Score=54.21 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-----ccc-ccHHHHHHHHHhhccCCCh
Q 007424 25 AAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLS-PYITKIINSITRNFRDKNS 96 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-----~i~-p~L~kIl~~IvrrLkDpDs 96 (604)
|++.|-.+....-|+. +..|...+.......++..|+.++++||.|+.-+ .+. ..++.|...+.+.+...|.
T Consensus 375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~ 454 (1056)
T 1lsh_A 375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE 454 (1056)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence 4444443333233433 5555555533222345678999999999996554 222 3377888888888888888
Q ss_pred hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc------CCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~------eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
.-+..++.|||.+...- .+++|...|-+ +....++..|..||.++... +-..+-+-++.+
T Consensus 455 ~~~~~~LkaLGN~g~p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-------~p~~v~~il~~i 520 (1056)
T 1lsh_A 455 EEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-------DPRKVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCChh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-------chHHHHHHHHHH
Confidence 88999999999998652 35555554422 11234777788887766542 223344456677
Q ss_pred hc--CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhh
Q 007424 171 LK--SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEF 240 (604)
Q Consensus 171 L~--s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py 240 (604)
+. ..+..+|-+++..+- ... |-. ..+..|..++. +.+-+++....-.|-.|+......+...
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm---~t~----P~~-~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~l 585 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFF---ESK----PSV-ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDV 585 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHH---HTC----CCH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred hcCCCCChHHHHHHHHHHH---HHC----cCH-HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 73 347778766554443 211 221 45666777765 4689988888888877777543334333
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.42 Score=56.78 Aligned_cols=260 Identities=13% Similarity=0.087 Sum_probs=149.4
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-----CCCCCCchhHHHHHHHH-HHHhhhccccc
Q 007424 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST-----NSSDKPGVRKECIHVIA-TLSNSHNLSPY 79 (604)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~-----~ss~kp~~RKaaI~lLG-vLae~h~i~p~ 79 (604)
.-.+-.+|+.=-..||...=...+..+..+.||..+++|+.+|... .++..+..--.-+.+|. ++.+...-.+.
T Consensus 555 ~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~ 634 (997)
T 1vsy_5 555 ENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD 634 (997)
T ss_dssp HHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445555553224566666666678888889999999999988331 12222322222233333 33332322345
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc---------------------------h-hHHHHHHHHHHHc-
Q 007424 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------------A-FVTMLKLLSDALF- 130 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~---------------------------~-~~sllkPL~eaL~- 130 (604)
+.+++-.+. |..|-..||++...+|+.+......+ + +...+.-+|+.+-
T Consensus 635 ~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~ 712 (997)
T 1vsy_5 635 VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKN 712 (997)
T ss_dssp CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHH
Confidence 788887777 88888899999999998877665211 0 1112333344441
Q ss_pred --c---CCCh------hHHHHHHHHHHHHHhhcCCC----ChhhHHH-HHHHHHHHhcCCch-hHHHHHHHHHHHHHhcC
Q 007424 131 --T---EQDT------NAQVGAALCLAATIDAAQDP----DAGKLGR-MEVRLERLLKSEVF-KAKAAGLVVVGSVIGSG 193 (604)
Q Consensus 131 --~---eqdk------~vQ~~AA~cLaalIE~a~d~----i~~yL~~-L~~RL~klL~s~~~-kaK~alLsaIGSiA~ag 193 (604)
+ +..+ .....+-..+.=+...+... ..+|++. ++|-|+.+.+..+. ..... ++...+...+
T Consensus 713 ~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~--~a~~~l~~ls 790 (997)
T 1vsy_5 713 LEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASL--DPVRLYAGLG 790 (997)
T ss_dssp GGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTC--CSHHHHHHTS
T ss_pred hhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhh--HHHHHHHHHh
Confidence 0 1011 01111222233333444443 3466666 77777777766633 22211 1222233333
Q ss_pred cCc-C-CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcch-hHHHHHHHHHHH
Q 007424 194 AVD-G-SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKV-KVVREVMNKMIE 268 (604)
Q Consensus 194 ~~f-~-pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKv-K~VRda~~~AL~ 268 (604)
... . .+.+.++..|.+... +..| .|.+++..|..+.-..= -.-..-...+.+++.++=+|+- -.||+.|..+|.
T Consensus 791 ~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLs 869 (997)
T 1vsy_5 791 YMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILS 869 (997)
T ss_dssp SSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 322 2 445556666666665 5789 99999999887765211 1111233678888999999999 999999999997
Q ss_pred HH
Q 007424 269 AW 270 (604)
Q Consensus 269 ~w 270 (604)
-+
T Consensus 870 gl 871 (997)
T 1vsy_5 870 DI 871 (997)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=92.14 E-value=4.3 Score=48.30 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHH
Q 007424 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~ 104 (604)
.+-.|-.+.+.++.++|..++..+.+ ++..|+--+-+|+.+.... -+. +|...+...+...-+ ++.
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT~~----a~~----~i~~~i~~~~l~~~e-a~~ 377 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATSE----ALL----FLKRTLASEQLTSAE-ATQ 377 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSHH----HHH----HHHHHHHTTCSCHHH-HHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCCHH----HHH----HHHHHHHcCCCCHHH-HHH
Confidence 44456667777777777777777653 3456665444554443322 222 333334443333333 334
Q ss_pred HHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcC--C-C-ChhhHHHHHHHHHHHhcCCchh
Q 007424 105 TVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQ--D-P-DAGKLGRMEVRLERLLKSEVFK 177 (604)
Q Consensus 105 aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a~--d-~-i~~yL~~L~~RL~klL~s~~~k 177 (604)
+|..+. ++. .|...++.-+++.+.. ..++.+...|.+++..+|.... . . ..++++.+...|.+.++..+..
T Consensus 378 ~l~~~~-~~~-~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~ 455 (1056)
T 1lsh_A 378 IVASTL-SNQ-QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEE 455 (1056)
T ss_dssp HHHHHH-HTC-CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh-ccC-CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChH
Confidence 444322 322 2322344444444421 2456677788999988887631 1 1 2366778888888888877777
Q ss_pred HHHHHHHHHHH
Q 007424 178 AKAAGLVVVGS 188 (604)
Q Consensus 178 aK~alLsaIGS 188 (604)
.+...|-+||-
T Consensus 456 ~~~~~LkaLGN 466 (1056)
T 1lsh_A 456 EIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 77777778884
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=91.68 E-value=3.1 Score=40.41 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=93.1
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHH-HHHhhccCCChhHHHHHHHHHHhhhhhhcc----
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIIN-SITRNFRDKNSALQATCISTVSSLSPRVGA---- 115 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~-~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d---- 115 (604)
+..|+..+.+...+ ..|++|+..|..=...|-+.||+-..+. .|...+. |.. .+..+-++++-+.+
T Consensus 9 lq~yf~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~----~L~~lm~~~~ALl~N~~l 79 (196)
T 4atg_A 9 LQLYFDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFK--EAE----VLKTCIALYFSLIKNKHV 79 (196)
T ss_dssp HHHHHHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHH----HHHHHHHHHHHHHcCCCC
Confidence 34455555555444 4577776666655555544444443333 2333443 222 33344444444443
Q ss_pred ---chhHHHHHHHHHHHccCC-C-hhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 116 ---SAFVTMLKLLSDALFTEQ-D-TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 116 ---~~~~sllkPL~eaL~~eq-d-k~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
+=.|.+++|++..+++.+ . .....-||..|+.++..-++.-...-++++..+.+.|-++. +--....+||-.+.
T Consensus 80 ~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~-~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 80 FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN-RSEDSQYGALYCLS 158 (196)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT-SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHH
Confidence 125568888888887543 1 15888999999999998766554556778888888887664 22356777777777
Q ss_pred hcCcCcCCchHH-HHHHHHhhh
Q 007424 191 GSGAVDGSGLKG-LVSCLLGFL 211 (604)
Q Consensus 191 ~ag~~f~pyf~~-lm~~L~e~L 211 (604)
..|... ... ++|.|..++
T Consensus 159 ~lG~~~---vr~~llP~l~~~~ 177 (196)
T 4atg_A 159 ILSKNV---VNTVIREHAEEYK 177 (196)
T ss_dssp HHCHHH---HHTHHHHHHHHHH
T ss_pred HhHHHH---HHHhhhcCHHHHH
Confidence 766532 222 347776655
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=89.89 E-value=6.5 Score=38.16 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCChhhHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc
Q 007424 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (604)
Q Consensus 119 ~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~-d~i~~yL~-~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f 196 (604)
..|+.-+.+++.+ ... ..||+.+=...+ .+++||+- .+...+..-++ +...=..++..+.|+..=...+
T Consensus 10 q~yf~~It~a~~~----~~r---~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 10 QLYFDKILSMIKS----DMK---DIAIECLEKESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHHHHHTS----TTH---HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHh----HHH---HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCC
Confidence 3488888888875 122 233444333211 22344432 34444444443 4444455677777777644455
Q ss_pred C-CchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhH
Q 007424 197 G-SGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKV 258 (604)
Q Consensus 197 ~-pyf~~lm~~L~e~L~s~---Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~ 258 (604)
. ||+-.+||.+..|+-.. .-.+|..|++.|+.|....|+.....+.++++.|-..=.|..|+
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~ 146 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRS 146 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSC
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCC
Confidence 4 99999999999999531 22899999999999999888766666677777776655565443
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=87.24 E-value=15 Score=38.30 Aligned_cols=157 Identities=12% Similarity=0.201 Sum_probs=109.2
Q ss_pred hHHHHHhh-hhcCCCCCCchhHHH-HHHHHHHHhhh--cccccHHHHHHHHH----hhccC---CChhHHHHHHHHHHhh
Q 007424 41 LPTFLSCI-LSTNSSDKPGVRKEC-IHVIATLSNSH--NLSPYITKIINSIT----RNFRD---KNSALQATCISTVSSL 109 (604)
Q Consensus 41 ip~fL~~L-~e~~ss~kp~~RKaa-I~lLGvLae~h--~i~p~L~kIl~~Iv----rrLkD---pDs~VR~Ac~~aLg~L 109 (604)
+|+++..+ .||..+ -|..|..- +.++..++.-. .+.|++|.|+..|. .-+++ .-|-.|.+=-.=|.++
T Consensus 71 ippLl~~VL~DY~~~-vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp HHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 78998755 777554 46677654 46677776655 89999999998865 34443 3366788887778888
Q ss_pred hhhhccc--hhH-HHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcC--CCC-----hhhHHHHHHHHHHHhcCC--
Q 007424 110 SPRVGAS--AFV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQ--DPD-----AGKLGRMEVRLERLLKSE-- 174 (604)
Q Consensus 110 Ae~l~d~--~~~-sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~--d~i-----~~yL~~L~~RL~klL~s~-- 174 (604)
..++... ... .-++.+++++. .+.++++...+-.+|..++++.. +.. ..|+-.++..++..|.+.
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 8776541 011 14566666653 57889999999999999988864 222 245666777888888644
Q ss_pred --chhHHHHHHHHHHHHHhcCcCcCC
Q 007424 175 --VFKAKAAGLVVVGSVIGSGAVDGS 198 (604)
Q Consensus 175 --~~kaK~alLsaIGSiA~ag~~f~p 198 (604)
+|+....+|.-+-.++..|....|
T Consensus 230 k~gF~~q~~iL~~lf~~ve~~~i~~p 255 (321)
T 1w9c_A 230 TAGLTMHASILAYMFNLVEEGKISTS 255 (321)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred hccHHHHHHHHHHHHHHHHcCccccc
Confidence 778888999988888877654334
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=83.07 E-value=43 Score=35.58 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=76.6
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAA----- 152 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~s-llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a----- 152 (604)
.|+.+++.|+..-.|++..||.-++.=++..+.. +..... .+..|...| .+.++.|...+..|...+...+
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL-~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLL-RDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777778888899999999988877766643 122223 444444444 6788888888777776655331
Q ss_pred --CCC------ChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 007424 153 --QDP------DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (604)
Q Consensus 153 --~d~------i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA 190 (604)
+.. .-+.+..+-.+++.++.+.+..+|-.++=.+-.++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 111 12456777888999999999999999888888777
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=82.65 E-value=42 Score=36.98 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccC
Q 007424 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD 93 (604)
Q Consensus 17 sDrDT~r~A~~eLD~lA~~L~pe~---ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkD 93 (604)
++.-+-+.|+|-|-.+..+.|.=+ |..++.++. .++..+|+.||+.|..+|.. .|++||.-++.+.|+-
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE----Ded~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCE----DEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQT 111 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT----CSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhc
Confidence 456688999999999999987533 566565555 45668999999999999986 6899999999999999
Q ss_pred CChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 94 KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 94 pDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
.|+.-+.+.-++|-.|-..=.+ ..|..||..+
T Consensus 112 dd~~E~~~V~~sL~sllk~Dpk----~tl~~lf~~i 143 (507)
T 3u0r_A 112 DDSAEFNLVNNALLSIFKMDAK----GTLGGLFSQI 143 (507)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcChH----HHHHHHHHHH
Confidence 9998888888888777554311 2444455544
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=80.40 E-value=16 Score=41.56 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhccCCCh-hHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHHh---hcCC
Q 007424 80 ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ-DTNAQVGAALCLAATID---AAQD 154 (604)
Q Consensus 80 L~kIl~~IvrrLkDpDs-~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE---~a~d 154 (604)
-..-|+.++.||....- .=|++|+.+|-.++..+....-..-+++|+..|-.+. |...-. .+|+.++- ..++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~---~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIG---YALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHH---HHHHHHHHHHCCC--
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHH---HHHHHHHHHhCCCCc
Confidence 45567778888866443 3599999999999988732212226999999996443 322222 23444422 1111
Q ss_pred ------------CChhhH-------HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcC-cCCc---hHHHHHHHHhhh
Q 007424 155 ------------PDAGKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSG---LKGLVSCLLGFL 211 (604)
Q Consensus 155 ------------~i~~yL-------~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~-f~py---f~~lm~~L~e~L 211 (604)
.+...+ +.-++-|+.+|++.+|.+|-..+.++..+...-.. ...+ .+.-|+.|.+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 010111 23466689999999999999988888887754322 2111 124689999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q 007424 212 SSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 212 ~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
.++.=.+|-.|+-.|..|...
T Consensus 176 ~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTT
T ss_pred hCchHHHHHHHHHHHHHHhcC
Confidence 999999999999999998873
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 604 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 8e-08 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-07 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-05 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 8e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-05 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-04 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 0.003 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 8e-08
Identities = 39/278 (14%), Positives = 92/278 (33%), Gaps = 19/278 (6%)
Query: 9 VNGLLNKLSDRDT-YSQAA-----KELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKE 62
++ LL K++ D + A EL + +D + IL V+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 63 CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQ---ATCISTVSSLSPR------V 113
+ + L S + I++++ N L+ + + TV P +
Sbjct: 65 AVKCLGPLV-SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 123
Query: 114 GASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173
A+ + L+ A+ ++D + Q+ A +A + + L L S
Sbjct: 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 174 EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLL-GFLSSQDWAARKAAAEALWRLAVV 232
+ ++ +G ++ S L+ LL + + + + + ++
Sbjct: 184 PRLAVRKRTIIALGHLVMS--CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 241
Query: 233 EKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270
+ E+ K + + +RE + E++
Sbjct: 242 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF 279
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 32/203 (15%), Positives = 64/203 (31%), Gaps = 12/203 (5%)
Query: 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGA 141
K++ I + DKN +Q + + L +V T++ L + + +
Sbjct: 45 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNM-LSDKEQLRDIS 103
Query: 142 ALCLAATIDAAQDPDAGKLGR-------MEVRLERLLKSEVFKAKAAGLVVVGSVIGS-G 193
++ L I +G + K E + L ++ ++ G
Sbjct: 104 SIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163
Query: 194 AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA-VVEKDAVPEFKGKCLKIFESKR 252
+ + +++CLL L+S A RK AL L + L
Sbjct: 164 GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN- 222
Query: 253 FDKVKVVREVMNKMIEAWKQVPD 275
D + R + + +Q
Sbjct: 223 -DSMSTTRTYIQCIAAISRQAGH 244
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 4/194 (2%)
Query: 73 SHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE 132
S ++ + ++ S ++ L V+ + + +
Sbjct: 728 SGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTAL 787
Query: 133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192
+ A C+AA A +G+ ++ ++ + A L+ +G V
Sbjct: 788 THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLA--LLSLGEVGHH 845
Query: 193 GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKR 252
+D SG L S +L SS + AA+ AL ++V F + + ++
Sbjct: 846 --IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQ 903
Query: 253 FDKVKVVREVMNKM 266
+ + ++E+++
Sbjct: 904 YLLLHSLKEIISSA 917
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/246 (14%), Positives = 75/246 (30%), Gaps = 18/246 (7%)
Query: 12 LLNKLSDRDTY--SQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIAT 69
LN + D + + +IA+ + P L + S S+ + +
Sbjct: 93 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQK 152
Query: 70 LS-------NSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122
+ +S L + +I + F+ + +++ ++ V+ + + +
Sbjct: 153 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID 212
Query: 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS------EVF 176
+ D +V +C A + D M +E +L+ V
Sbjct: 213 SFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQDENVA 271
Query: 177 KAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL--SSQDWAARKAAAEALWRLAVVEK 234
+ + V L L+ L+ + S D K E + E+
Sbjct: 272 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ 331
Query: 235 DAVPEF 240
D P F
Sbjct: 332 DIRPRF 337
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.003
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 20 DTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---HNL 76
+ A L +A + ++P L I + R + + L
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118
P + + + ++ +D + ++ T TV + + +A
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 443
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 604 | |||
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.76 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.58 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.57 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.49 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.47 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.39 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.38 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.29 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.04 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.99 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.91 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 98.81 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.79 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.74 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.72 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.66 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.62 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.61 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.58 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.48 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.26 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.26 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.25 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 98.12 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.98 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.95 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.3 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 95.2 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 85.33 |
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=7.1e-18 Score=188.80 Aligned_cols=222 Identities=16% Similarity=0.118 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~V 98 (604)
.+++|...|+.++..++.+-++.+++.+.+...+++|..|++++++||.+++++ .+.||++.+++.|+..|+|+++.|
T Consensus 373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~V 452 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 452 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHH
Confidence 578899999999988887779999999999999999999999999999999998 889999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccchhHH----HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCC
Q 007424 99 QATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (604)
Q Consensus 99 R~Ac~~aLg~LAe~l~d~~~~s----llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~ 174 (604)
|.++++++|++++++....... ++..|+..+ .+.++.||.+||.||..++|.+++...+|++.+++.|.++|+..
T Consensus 453 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~ 531 (888)
T d1qbkb_ 453 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 531 (888)
T ss_dssp HHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999999999999986532222 666666666 46788999999999999999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHHHh-cCcCc--CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcCcchhhhhhH
Q 007424 175 VFKAKAAGLVVVGSVIG-SGAVD--GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEKDAVPEFKGK 243 (604)
Q Consensus 175 ~~kaK~alLsaIGSiA~-ag~~f--~pyf~~lm~~L~e~L~s--~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~ 243 (604)
..+.+..++.++++++. ++..+ .+|.+.+++.+.+.+.. ++-..+..+.++|+.++...|+.|.||...
T Consensus 532 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~ 605 (888)
T d1qbkb_ 532 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP 605 (888)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 77788889999999996 45443 37888899999887742 222233457899999999999988888643
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=8.6e-14 Score=149.07 Aligned_cols=248 Identities=11% Similarity=0.078 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
....+...|+.++..++.+.++.++..+.....+.++..|.+++.++|.+++++ .+.+|++.+++.+++.|.|+++.
T Consensus 347 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~ 426 (861)
T d2bpta1 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchh
Confidence 677888889999999988779999999999999999999999999999998877 67899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccch-----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHHH
Q 007424 98 LQATCISTVSSLSPRVGASA-----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP----DAGKLGRMEVRLE 168 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~-----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~----i~~yL~~L~~RL~ 168 (604)
||.++++++|.+++++.... +..++..++..+ ..++.++..++.++..+++...+. ..+++..++..++
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 504 (861)
T d2bpta1 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL--QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcc--ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHH
Confidence 99999999999999985421 222444444444 356778888899998888875433 2456666777766
Q ss_pred HHhcCC--chhHHHHHHHHHHHHHh-------------------------------------------------------
Q 007424 169 RLLKSE--VFKAKAAGLVVVGSVIG------------------------------------------------------- 191 (604)
Q Consensus 169 klL~s~--~~kaK~alLsaIGSiA~------------------------------------------------------- 191 (604)
.++... ....+.+++.+++.++.
T Consensus 505 ~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 584 (861)
T d2bpta1 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 665433 33444444444444432
Q ss_pred --cCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 192 --SGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 192 --ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
.+..+.||++.+|+.+...+. .+++.+|..++.+|+.++...|+.|.||...++..|..+--|....||.++..++.
T Consensus 585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~ 664 (861)
T d2bpta1 585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIA 664 (861)
T ss_dssp HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHH
Confidence 123344677777777777775 45688999999999999999999999999999999988888999999998877776
Q ss_pred HH
Q 007424 269 AW 270 (604)
Q Consensus 269 ~w 270 (604)
-.
T Consensus 665 ~i 666 (861)
T d2bpta1 665 DI 666 (861)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.8e-14 Score=149.65 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=189.2
Q ss_pred hHHHHHHHHHhhhc-CChh--HHHHHHHHHHHHHhhcCCCCh-HHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007424 3 HALKTSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP 78 (604)
Q Consensus 3 ~eLk~rvl~~L~KL-sDrD--T~r~A~~eLD~lA~~L~pe~i-p~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p 78 (604)
+..+..++..+.+| .|.+ -++.|+..|..++..++.+.+ +.+++.+.+...++++.+|+.++.+++.++....-..
T Consensus 159 ~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~ 238 (588)
T d1b3ua_ 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH
Confidence 34555666666666 4555 578889999999998876552 4455555555567788999999999998876542234
Q ss_pred cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCC--
Q 007424 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-- 156 (604)
Q Consensus 79 ~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i-- 156 (604)
+...++|.+.+.++|++..||.+++++++.++...........+.|++..++.+.++.++..|+.+|..+++..+...
T Consensus 239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~ 318 (588)
T d1b3ua_ 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence 566788899999999999999999999999998774322333455566666678899999999999999998865443
Q ss_pred hhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cC-----------------------------------cCc--CC
Q 007424 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG-----------------------------------AVD--GS 198 (604)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag-----------------------------------~~f--~p 198 (604)
..++..+++.+.+++++.+..+|..+..+++.++. .| ... ..
T Consensus 319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~ 398 (588)
T d1b3ua_ 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ 398 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH
T ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhh
Confidence 23566677777777776666666555444433221 00 000 12
Q ss_pred chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 199 yf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..+.++|.+.+.+.+.+|.+|.+++++|+.++...| +.|.++ +...+..+=.|.+..||.++.++|..+
T Consensus 399 ~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~D~~~~VR~~A~~~L~~l 468 (588)
T d1b3ua_ 399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK---LNSLCMAWLVDHVYAIREAATSNLKKL 468 (588)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHH---HHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHH---HHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 345677888888889999999999999999999887 554443 344455555699999999999998766
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.9e-12 Score=139.48 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cccccHHHHHHHHHhhccCCChh
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~~IvrrLkDpDs~ 97 (604)
.+..|...|+.++..++.+.++.+++.+.+...+.+|..|++++.++|.+++++ .+.++++.+++.++..+.|+++.
T Consensus 344 ~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~ 423 (876)
T d1qgra_ 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccH
Confidence 678888999999999887779999999999999999999999999999998876 77899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchh-HHHHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcC--------------CCChhhH
Q 007424 98 LQATCISTVSSLSPRVGASAF-VTMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQ--------------DPDAGKL 160 (604)
Q Consensus 98 VR~Ac~~aLg~LAe~l~d~~~-~sllkPL~eaL~~--eqdk~vQ~~AA~cLaalIE~a~--------------d~i~~yL 160 (604)
||.+++++++++++++..... ..++.+++..++. +.++.++..++.++..+++... ..+.+|+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (876)
T d1qgra_ 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF 503 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH
T ss_pred HHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999854221 1245555555542 4567788888888877765410 0111222
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 007424 161 GRMEVRLE------------------------------------------------------------------------ 168 (604)
Q Consensus 161 ~~L~~RL~------------------------------------------------------------------------ 168 (604)
+.+++.++
T Consensus 504 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (876)
T d1qgra_ 504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHH
Confidence 22222222
Q ss_pred -----------------------------HHhcC--CchhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcC-Cc
Q 007424 169 -----------------------------RLLKS--EVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSS-QD 215 (604)
Q Consensus 169 -----------------------------klL~s--~~~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s-~D 215 (604)
++|.. ++..++..++.++++++. .+..|.||++.++|.|...|.+ ++
T Consensus 584 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~ 663 (876)
T d1qgra_ 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE 663 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc
Confidence 11111 122234455666666665 4556779999999999999975 56
Q ss_pred HHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCc-c-hhHHHHHHHHHHHHH
Q 007424 216 WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD-K-VKVVREVMNKMIEAW 270 (604)
Q Consensus 216 w~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfD-K-vK~VRda~~~AL~~w 270 (604)
+++|.+|+++|+.++...++.|.||...++..|-.+=-| . -..||.++..++...
T Consensus 664 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i 720 (876)
T d1qgra_ 664 YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDI 720 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777776544322 2 146888887777654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.2e-13 Score=151.55 Aligned_cols=254 Identities=15% Similarity=0.188 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC---------hHHHHHhhhhcCC-CCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHH
Q 007424 21 TYSQAAKELDSIAATVDPTL---------LPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT 88 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~---------ip~fL~~L~e~~s-s~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~Iv 88 (604)
.+..+...|..+...++... ++.++..+.+... ..++.+|.+++.+|+.+...+ .+.|+.+.+++.++
T Consensus 99 ~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~ 178 (1207)
T d1u6gc_ 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 178 (1207)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHG
T ss_pred hhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 45555556666666664321 2444444544433 334577888999999887766 88899999999999
Q ss_pred hhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 007424 89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (604)
Q Consensus 89 rrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~ 168 (604)
..|.|+++.||.+|+.+++.++.++.+.-+..++..++..|..+.+..+..++..|+..++...+....+|++.+++-++
T Consensus 179 ~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 258 (1207)
T d1u6gc_ 179 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV 258 (1207)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHH
Confidence 99999999999999999999999885543445888888888666666677788999999999988888899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhc-----------------------------------
Q 007424 169 RLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLS----------------------------------- 212 (604)
Q Consensus 169 klL~s~~~kaK~alLsaIGSiA~a-g~~f~pyf~~lm~~L~e~L~----------------------------------- 212 (604)
+.++.++..++..++.++.+++.. +..+.||+..+++.+..++.
T Consensus 259 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1207)
T d1u6gc_ 259 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 338 (1207)
T ss_dssp HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------------------
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhh
Confidence 999999999999999999999874 45566999999988876652
Q ss_pred --CCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH-HHhCC
Q 007424 213 --SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA-WKQVP 274 (604)
Q Consensus 213 --s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~-wK~i~ 274 (604)
+..|.+|++|+++|+.++...++.+.++...++..|-.+-.|+...||.++..++.. ++...
T Consensus 339 ~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Confidence 135999999999999999988898888888899988888889999999999998765 44433
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.3e-13 Score=139.71 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh----cccccHHHHHHHHHhhccCCC
Q 007424 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKN 95 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h----~i~p~L~kIl~~IvrrLkDpD 95 (604)
.+..+++.|-.++..++++. ...++..+.....+.++.+|..++..++.++... ...+++++|+|.+.+.+.|++
T Consensus 258 Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~ 337 (588)
T d1b3ua_ 258 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp HHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC
T ss_pred HHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence 55666666666666555432 1122222222233445567777777777766543 233456777777777777777
Q ss_pred hhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc
Q 007424 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~ 175 (604)
..||.+++.+++.++..+.+......+.|.+..++.+.++.++.+++.++..+.+..+. ..+.+.|+|.+..++++++
T Consensus 338 ~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~ 415 (588)
T d1b3ua_ 338 QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAK 415 (588)
T ss_dssp HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSS
T ss_pred hHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhhhhHHHHHHHHHHhccc
Confidence 77777777777777666543222233444444444788889999999999998886542 2456779999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCc
Q 007424 176 FKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD 254 (604)
Q Consensus 176 ~kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfD 254 (604)
..+|.+++.+++.+++ .|..+ +.+.+++.+...+.++.|.+|.+|+.+|+.|+...|..+ ....++..|...-.|
T Consensus 416 ~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~--~~~~i~~~l~~~~~~ 491 (588)
T d1b3ua_ 416 WRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD 491 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHhcC
Confidence 9999999999999886 34332 234567888888999999999999999999999887422 123456666667778
Q ss_pred chhHHHHHHHHHHHHHHh
Q 007424 255 KVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 255 KvK~VRda~~~AL~~wK~ 272 (604)
+-..+|.++..++..+.+
T Consensus 492 ~~~~~R~~~~~~l~~l~~ 509 (588)
T d1b3ua_ 492 PNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 888999998888887744
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.2e-12 Score=125.00 Aligned_cols=262 Identities=13% Similarity=0.121 Sum_probs=177.3
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhc-CC----CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh---cc
Q 007424 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATV-DP----TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL 76 (604)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L-~p----e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h---~i 76 (604)
+|+.+++.+.. +....+.++..+-.++... +. +-++.++..+.+ ....+..|+.++.+|+.+++.. ..
T Consensus 90 i~~~ll~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~ 165 (458)
T d1ibrb_ 90 VKNYVLQTLGT--ETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN--PNSTEHMKESTLEAIGYICQDIDPEQL 165 (458)
T ss_dssp HHHHHHHHTTC--CCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHhccCC--CcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHh--hcchHHHHHHHHHHHHHHHhhccchhh
Confidence 33444444433 3334445555666666553 32 225666665553 2334567889999999998765 77
Q ss_pred cccHHHHHHHHHhhccCCC--hhHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007424 77 SPYITKIINSITRNFRDKN--SALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpD--s~VR~Ac~~aLg~LAe~l~d~----~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE 150 (604)
.+++..|++.+++.|.+.+ ..||.+|.++++.+....... .....+.+++..++.+.++.+...++.||..+++
T Consensus 166 ~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~ 245 (458)
T d1ibrb_ 166 QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 245 (458)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999998755 469999999999999876532 1112344444444467788899999999999988
Q ss_pred hcCCCChhhHHH---------------------------------------------------------------HHHHH
Q 007424 151 AAQDPDAGKLGR---------------------------------------------------------------MEVRL 167 (604)
Q Consensus 151 ~a~d~i~~yL~~---------------------------------------------------------------L~~RL 167 (604)
..+....+|+.. +++.+
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 325 (458)
T d1ibrb_ 246 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325 (458)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 765433333322 22222
Q ss_pred HHHhc-------CCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc-Ccchhh
Q 007424 168 ERLLK-------SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE-KDAVPE 239 (604)
Q Consensus 168 ~klL~-------s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~-ge~f~p 239 (604)
.+.+. ...+.++.++..+++.++...+ ..+++.+++.+.+.+.+++|..|.+|+.+|+.|+... ++.+.|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~ 403 (458)
T d1ibrb_ 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 403 (458)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HhhhhcchhhhccccccHHHHHHHHHHHHHHhcc--HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH
Confidence 22221 1112244455555555554322 1456778899999999999999999999999999754 477888
Q ss_pred hhhHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Q 007424 240 FKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 240 y~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~ 272 (604)
|...++..|-.+--|....||.+|..+|.-+-+
T Consensus 404 ~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 888888888888889999999999999976543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3e-11 Score=134.51 Aligned_cols=258 Identities=14% Similarity=0.154 Sum_probs=191.8
Q ss_pred HHhhhcCChh--HHHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHH
Q 007424 11 GLLNKLSDRD--TYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITK 82 (604)
Q Consensus 11 ~~L~KLsDrD--T~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~k 82 (604)
..+.-|.|.+ -+..|+..|-.++..+.+.. +..++..|.....+.++.+|.+|..+|+.+++.. .+.||++.
T Consensus 440 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~ 519 (888)
T d1qbkb_ 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 519 (888)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3445566766 35667778888777653322 4556666666666677899999999999998877 88999999
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc----chhHH-HHHHH--------------------------------
Q 007424 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAFVT-MLKLL-------------------------------- 125 (604)
Q Consensus 83 Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d----~~~~s-llkPL-------------------------------- 125 (604)
|++.+.+.+.+.+..++.++.++++.+++.+.. +.... +++++
T Consensus 520 il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~ 599 (888)
T d1qbkb_ 520 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599 (888)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999998875532 11111 22222
Q ss_pred -------HHHHc--------------------cCCChhHHHHHHHHHHHHHhhcCCCChhhHHH--HHHHHHHHhcCCch
Q 007424 126 -------SDALF--------------------TEQDTNAQVGAALCLAATIDAAQDPDAGKLGR--MEVRLERLLKSEVF 176 (604)
Q Consensus 126 -------~eaL~--------------------~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~--L~~RL~klL~s~~~ 176 (604)
+..++ ...++.....+..++..+++.++....+++.. +++-+.+++++.+.
T Consensus 600 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 679 (888)
T d1qbkb_ 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP 679 (888)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCCh
Confidence 11110 01123344455556677777777666666543 77888899999999
Q ss_pred hHHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHH----HHHHhc
Q 007424 177 KAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL----KIFESK 251 (604)
Q Consensus 177 kaK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i----~~Le~c 251 (604)
.++..++.++|.++. .+..+.||++.+++.|...|.++++.++..|+.++|.|+...|+.|.||...++ ++|++.
T Consensus 680 ~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~ 759 (888)
T d1qbkb_ 680 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP 759 (888)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCC
Confidence 999999999999996 456677999999999999999999999999999999999999999999976655 555544
Q ss_pred cCcchhHHHHHHHHHHHHH
Q 007424 252 RFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 252 RfDKvK~VRda~~~AL~~w 270 (604)
... +.|++.+..||.-+
T Consensus 760 ~~~--~~v~~n~~~~lgrl 776 (888)
T d1qbkb_ 760 NTP--KTLLENTAITIGRL 776 (888)
T ss_dssp TCC--HHHHHHHHHHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHH
Confidence 332 45889988888755
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=7.6e-12 Score=141.87 Aligned_cols=264 Identities=13% Similarity=0.133 Sum_probs=206.4
Q ss_pred HHHHHhhhcCChh--HHHHHHHHHHHHHhh----cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHH
Q 007424 8 SVNGLLNKLSDRD--TYSQAAKELDSIAAT----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT 81 (604)
Q Consensus 8 rvl~~L~KLsDrD--T~r~A~~eLD~lA~~----L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~ 81 (604)
.+-+.|.|+.|.| =+.+|+..|-...+. ++.+....++..|.....++++.+|..|+++||.++... -.++++
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~-~~~~~~ 82 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEYQVE 82 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC-cHhhHH
Confidence 4677899997666 466888777765432 455556666777766667778899999999999997643 345788
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc----h-----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007424 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----A-----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 82 kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~----~-----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
.|+..++..+.+++..+|++++.++..+...+... . ...++..|..++....+..++..|..+|..++...
T Consensus 83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~ 162 (1207)
T d1u6gc_ 83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162 (1207)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888777531 1 11245555555544557788889999999999999
Q ss_pred CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHHH
Q 007424 153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL-SSQDWAARKAAAEALWRLAV 231 (604)
Q Consensus 153 ~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L-~s~Dw~lRkaAaDaLg~LA~ 231 (604)
+..+.++...+++.|...|+++...+|..++.+++.++...+. .++..+++.+.+.| .+..|..|..++.+|+.|+.
T Consensus 163 g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~ 240 (1207)
T d1u6gc_ 163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 240 (1207)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999988753221 23344555555544 35678889999999999999
Q ss_pred HcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 232 VEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 232 ~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
..|..|.+|...++..+-.+--+.-..||+.+.++++.|-..-
T Consensus 241 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 283 (1207)
T d1u6gc_ 241 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 283 (1207)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988888889999999999999885543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1.9e-10 Score=122.76 Aligned_cols=247 Identities=10% Similarity=0.106 Sum_probs=181.0
Q ss_pred HHHHHHHHhhcCCCC---hHHHHHhhhhcC-CCCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCChhHH
Q 007424 26 AKELDSIAATVDPTL---LPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQ 99 (604)
Q Consensus 26 ~~eLD~lA~~L~pe~---ip~fL~~L~e~~-ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpDs~VR 99 (604)
...|..+...++.+. +..++..+.... ....+.+|..++.+++.++... .+.||++.|+|.++..|+|.+..||
T Consensus 577 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~ 656 (861)
T d2bpta1 577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656 (861)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHH
Confidence 344555555554332 344555554433 2334578999999999998877 7789999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccc--hh-HHHHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCc
Q 007424 100 ATCISTVSSLSPRVGAS--AF-VTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (604)
Q Consensus 100 ~Ac~~aLg~LAe~l~d~--~~-~sllkPL~eaL~~e-qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~ 175 (604)
.+++.++|.++..+.+. ++ ..++..|++.|... .++.+...++.||..++.+.+....+|++.+++-+.+++....
T Consensus 657 ~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~ 736 (861)
T d2bpta1 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999999877431 22 22667777777432 2456788899999999999888888999999999999987542
Q ss_pred -----------hhHHHHHHHHHHHHHhcCc----CcCCchHHHHHHHHhhhcCC----cHHHHHHHHHHHHHHHHHcCc-
Q 007424 176 -----------FKAKAAGLVVVGSVIGSGA----VDGSGLKGLVSCLLGFLSSQ----DWAARKAAAEALWRLAVVEKD- 235 (604)
Q Consensus 176 -----------~kaK~alLsaIGSiA~ag~----~f~pyf~~lm~~L~e~L~s~----Dw~lRkaAaDaLg~LA~~~ge- 235 (604)
..++.+++.++..++++-+ ...||++.+++.+...+.+. +-.++++|+.+||.++...|+
T Consensus 737 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 816 (861)
T d2bpta1 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcch
Confidence 2356778888877776322 23599998888888777653 567889999999999998874
Q ss_pred chhhhh--hHHHHHHHhccCcc--hhHHHHHHHHHHHHHHh
Q 007424 236 AVPEFK--GKCLKIFESKRFDK--VKVVREVMNKMIEAWKQ 272 (604)
Q Consensus 236 ~f~py~--~~~i~~Le~cRfDK--vK~VRda~~~AL~~wK~ 272 (604)
.+.++. ..+.+.+..+|-++ -..-|+.|.-|.+..|+
T Consensus 817 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (861)
T d2bpta1 817 SIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp TTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHH
Confidence 555554 44666676666555 34577778888777765
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.9e-10 Score=114.04 Aligned_cols=212 Identities=11% Similarity=0.154 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHHhhcCC----CC-hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccHHHHHH-HHHhhc
Q 007424 20 DTYSQAAKELDSIAATVDP----TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIIN-SITRNF 91 (604)
Q Consensus 20 DT~r~A~~eLD~lA~~L~p----e~-ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~-~IvrrL 91 (604)
+-...|+..+-.+...++. +. .+.++..|.+...++++.+|+.++.+|+.+++.+ .+.||+..++. .+...+
T Consensus 188 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~ 267 (458)
T d1ibrb_ 188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 267 (458)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777766665421 12 4667788888888888999999999999999888 78899877655 456778
Q ss_pred cCCChhHHHHHHHHHHhhhhhhcc------------------ch-h----HH-HHHHHHHHHc------cCCChhHHHHH
Q 007424 92 RDKNSALQATCISTVSSLSPRVGA------------------SA-F----VT-MLKLLSDALF------TEQDTNAQVGA 141 (604)
Q Consensus 92 kDpDs~VR~Ac~~aLg~LAe~l~d------------------~~-~----~s-llkPL~eaL~------~eqdk~vQ~~A 141 (604)
.+.+..|+..+++.+..+++...+ .. + .. +++-+.+.+. .+.+..+...|
T Consensus 268 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a 347 (458)
T d1ibrb_ 268 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 347 (458)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHH
Confidence 889999999999999998865432 00 0 01 2222233221 12234588899
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cC-cCcCCchHHHHHHHHhhhcCCcHHHH
Q 007424 142 ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG-AVDGSGLKGLVSCLLGFLSSQDWAAR 219 (604)
Q Consensus 142 A~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~-ag-~~f~pyf~~lm~~L~e~L~s~Dw~lR 219 (604)
+.|+..+....++ ++++.+++-+.+.|++++.++|.+++.++|+++. .+ ..+.||++.++|.|.+++.+++..+|
T Consensus 348 ~~~l~~l~~~~~~---~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR 424 (458)
T d1ibrb_ 348 GVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 424 (458)
T ss_dssp HHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHhccH---hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999998876 4678899999999999999999999999999885 33 34569999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 007424 220 KAAAEALWRLAVVEK 234 (604)
Q Consensus 220 kaAaDaLg~LA~~~g 234 (604)
.+|+.+||.++...+
T Consensus 425 ~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 425 DTAAWTVGRICELLP 439 (458)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998775
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.4e-09 Score=116.80 Aligned_cols=250 Identities=11% Similarity=0.100 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhcCCCC----hHHHHHhhhhcCC--CCCCchhHHHHHHHHHHHhhh--cccccHHHHHHHHHhhccCCC-
Q 007424 25 AAKELDSIAATVDPTL----LPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN- 95 (604)
Q Consensus 25 A~~eLD~lA~~L~pe~----ip~fL~~L~e~~s--s~kp~~RKaaI~lLGvLae~h--~i~p~L~kIl~~IvrrLkDpD- 95 (604)
....|..+...+..+. .+.++..+..... ..+..++..++.+++.++... .+.||++.|+|.|.+.|++.+
T Consensus 584 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~ 663 (876)
T d1qgra_ 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE 663 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc
Confidence 3445555555553221 3444555544332 335678999999999998766 788999999999999999876
Q ss_pred hhHHHHHHHHHHhhhhhhcc--chhH-HHHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 007424 96 SALQATCISTVSSLSPRVGA--SAFV-TMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (604)
Q Consensus 96 s~VR~Ac~~aLg~LAe~l~d--~~~~-sllkPL~eaL~~eq-dk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL 171 (604)
+.||.+|+..+|.++..... .++. .++..|+..|-.+. ++.+...++.|+..++.+.+....+|++.+++.|.+.+
T Consensus 664 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~ 743 (876)
T d1qgra_ 664 YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS 743 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 56999999999999887754 2222 37788888884322 45688889999999999988888899999999999887
Q ss_pred cCCch-----------hHHHHHHHHHHHHHhc----CcC-------cCCchHHHHHHHHhhhc--CCcHHHHHHHHHHHH
Q 007424 172 KSEVF-----------KAKAAGLVVVGSVIGS----GAV-------DGSGLKGLVSCLLGFLS--SQDWAARKAAAEALW 227 (604)
Q Consensus 172 ~s~~~-----------kaK~alLsaIGSiA~a----g~~-------f~pyf~~lm~~L~e~L~--s~Dw~lRkaAaDaLg 227 (604)
+...- .++.+++.++.++..+ ... ..||++.++..+..... +.++.++..|+.+||
T Consensus 744 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~ 823 (876)
T d1qgra_ 744 QAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIG 823 (876)
T ss_dssp TCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHH
T ss_pred hcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 63311 2456677777766532 111 13777776665554443 347899999999999
Q ss_pred HHHHHcCcchhhhh---hHHHHHHHhccCcchhHHHHHHHHHHHHHHhCC
Q 007424 228 RLAVVEKDAVPEFK---GKCLKIFESKRFDKVKVVREVMNKMIEAWKQVP 274 (604)
Q Consensus 228 ~LA~~~ge~f~py~---~~~i~~Le~cRfDKvK~VRda~~~AL~~wK~i~ 274 (604)
.|+...|+.+.++. ..+..+|+..+-..-+..|..|+-|.+..|+++
T Consensus 824 ~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~ 873 (876)
T d1qgra_ 824 DLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 99999885444332 667888888888889999999999999999876
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=4.5e-09 Score=98.69 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=128.0
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHH
Q 007424 50 STNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (604)
Q Consensus 50 e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL 129 (604)
+...+++|.+|..|+..||.+.. +..++.+++.|+|+|+.||.+|+.+|+.+.... ......+..|+..+
T Consensus 26 ~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~~~~~~~~l~~~~ 95 (276)
T d1oyza_ 26 RLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDNVFNILNNMA 95 (276)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccccchHHHHHHHH
Confidence 34446788999999999987753 467889999999999999999999999986543 12223667777777
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHh
Q 007424 130 FTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLG 209 (604)
Q Consensus 130 ~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e 209 (604)
+.+.++.+...|+.+|..++.... .+.+.+.+.+...+.+++..++.+++.+++. .+.. ..++.+..
T Consensus 96 l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~---~~~~------~~~~~l~~ 162 (276)
T d1oyza_ 96 LNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISV---INDK------ATIPLLIN 162 (276)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT---C---------CCHHHHHH
T ss_pred hcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhh---cchH------HHHHHHHH
Confidence 788899999999999998876532 3567888999999999888888776666653 2211 22445555
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHH
Q 007424 210 FLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEA 269 (604)
Q Consensus 210 ~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~ 269 (604)
.+.+.+|..|..+..+++.+........ ...+..+ .|....||..+..++..
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~al~~ 214 (276)
T d1oyza_ 163 LLKDPNGDVRNWAAFAININKYDNSDIR----DCFVEML----QDKNEEVRIEAIIGLSY 214 (276)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCHHHH----HHHHHHT----TCSCHHHHHHHHHHHHH
T ss_pred hcccccchhhhhHHHHHHhhhccccccc----hhhhhhh----hhhhhhhhhhhccccch
Confidence 5566667666666666554332211111 1112222 36666666666655543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=2e-08 Score=100.14 Aligned_cols=245 Identities=13% Similarity=0.175 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-ccccc--HHHHHHHHHhhccCCCh
Q 007424 24 QAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDKNS 96 (604)
Q Consensus 24 ~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~--L~kIl~~IvrrLkDpDs 96 (604)
.++..|..+..+-++.. ...+++.+.....+.++..+..++.+|+.++... ...+. -..+++.+++.+++++.
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~ 244 (434)
T d1q1sc_ 165 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 244 (434)
T ss_dssp HHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchh
Confidence 34444555554433222 2345555655566778899999999999997655 22222 23467888889999999
Q ss_pred hHHHHHHHHHHhhhhhhccch----hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH--HHHHHHHHHH
Q 007424 97 ALQATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERL 170 (604)
Q Consensus 97 ~VR~Ac~~aLg~LAe~l~d~~----~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL--~~L~~RL~kl 170 (604)
.++.+|+.+++.++..-.+.. ...++++|+..| .+.++.++..|+.+|..+.....+. ..++ ..+++.++.+
T Consensus 245 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~li~~ 322 (434)
T d1q1sc_ 245 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPFLVGV 322 (434)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHH
T ss_pred hhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhh-cccchhhhHHHHHHHhhhccccchh-HHHHhhhhhHHHHHHH
Confidence 999999999999986532211 112667777766 6778889999999999987653221 2222 2278899999
Q ss_pred hcCCchhHHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--cchhhhhh---
Q 007424 171 LKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKG--- 242 (604)
Q Consensus 171 L~s~~~kaK~alLsaIGSiA~ag~-~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g--e~f~py~~--- 242 (604)
|.+++++++..++.+|+.++..+. ....++ ..+++.|.+.|.+.|+.++..++++|..|..... ....+|..
T Consensus 323 l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~ 402 (434)
T d1q1sc_ 323 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 402 (434)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999999998886542 211111 1247888899999999999999999999886432 11222321
Q ss_pred --HHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 243 --KCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 243 --~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
..++.|+....++-..||+.+...|+-+
T Consensus 403 ~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 403 ECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2466788888899999999998888754
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=8.9e-08 Score=105.02 Aligned_cols=249 Identities=10% Similarity=0.073 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhc------CCCCCCchhHHHHHHHHHHHhhh-----------cccccHHHH
Q 007424 21 TYSQAAKELDSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNSH-----------NLSPYITKI 83 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~------~ss~kp~~RKaaI~lLGvLae~h-----------~i~p~L~kI 83 (604)
.+..|...|..++...+...++.++..+.+. ..+.++..|.+++.++|.++... ...+..+-+
T Consensus 377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 456 (959)
T d1wa5c_ 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (959)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence 4455566678888877655566666555433 24567889999999999986432 111222223
Q ss_pred HHHH---HhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC------
Q 007424 84 INSI---TRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD------ 154 (604)
Q Consensus 84 l~~I---vrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d------ 154 (604)
.+++ +..-.++...+|..+++.+++++.+........+++.++..| .+++..++..||.||..+++...+
T Consensus 457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~V~~~a~~al~~~~~~~~~~~~~~~ 535 (959)
T d1wa5c_ 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (959)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHhhcccccchh
Confidence 3333 344466777899999999999999875333344777777766 577888999999999999986432
Q ss_pred -----CChhhHHHHHHHHHHHhcCCchh-----HHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc-----CCcHHH
Q 007424 155 -----PDAGKLGRMEVRLERLLKSEVFK-----AKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS-----SQDWAA 218 (604)
Q Consensus 155 -----~i~~yL~~L~~RL~klL~s~~~k-----aK~alLsaIGSiA~-ag~~f~pyf~~lm~~L~e~L~-----s~Dw~l 218 (604)
.+.+|++.++..++.++...... ....++.+|+.++. .+..+.||+..+++.|.+.+. ..+-..
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 615 (959)
T d1wa5c_ 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (959)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred hccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 24589999999999998655322 22458899999886 566667999999999988773 235677
Q ss_pred HHHHHHHHHHHHHHcC-cchhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 219 RKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 219 RkaAaDaLg~LA~~~g-e~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+..+.++|+.+....+ +.+..+...++.++...--..+....+.+.+-+..+
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~ 668 (959)
T d1wa5c_ 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (959)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 8889999999998776 677777777777765543233333344333333333
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=3.4e-07 Score=94.35 Aligned_cols=252 Identities=14% Similarity=0.146 Sum_probs=178.2
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh--cccccH-HHHHHHHHhh
Q 007424 18 DRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRN 90 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~pe~----ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h--~i~p~L-~kIl~~Ivrr 90 (604)
+....+.|+..|-.++.+-++.. +..+++.|.....+.++..+..++.+|+.++... .+...+ ..+++.++..
T Consensus 217 ~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 296 (503)
T d1wa5b_ 217 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 296 (503)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhc
Confidence 34467778888888887653322 3345666666677788899999999999998755 222222 2467888999
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-HHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEV 165 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL-~~L~~ 165 (604)
|..++..|+..|+.+++.++..-.+.. .. .+++.|...| .+.++.++..++.||..++.+.++.....+ ..+++
T Consensus 297 l~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~ 375 (503)
T d1wa5b_ 297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 375 (503)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred ccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHh-cCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccc
Confidence 999999999999999999986543211 11 1555665555 677888999999999998765322121222 23778
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhcCcCcC---Cch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc-------
Q 007424 166 RLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG---SGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE------- 233 (604)
Q Consensus 166 RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~---pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~------- 233 (604)
.++.+|.+.++++|..++-+|+.++..+.... .++ ..+++.|.+.|...|..+...++++|..|....
T Consensus 376 ~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~ 455 (503)
T d1wa5b_ 376 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR 455 (503)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999988876443221 122 125677888998899999999999999876422
Q ss_pred Ccchhhhh-----hHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 234 KDAVPEFK-----GKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 234 ge~f~py~-----~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+-...+|+ ...++.|+..+.+.-+.|++.|..-|+.+
T Consensus 456 ~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~ 497 (503)
T d1wa5b_ 456 GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 497 (503)
T ss_dssp TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11223332 23577789999999999999999988866
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=5.1e-07 Score=84.27 Aligned_cols=221 Identities=12% Similarity=0.090 Sum_probs=131.2
Q ss_pred cCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcccccHHHHHHH-HHhhcc
Q 007424 16 LSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS-ITRNFR 92 (604)
Q Consensus 16 LsDrD--T~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~-IvrrLk 92 (604)
|.|.| .+..|+..|-.+. +++.++.++.++. ++++.+|..|+.+||.+..... ..+.+++. +...|+
T Consensus 28 L~d~~~~vR~~A~~~L~~~~---~~~~~~~l~~~l~----d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~~l~~~~l~ 97 (276)
T d1oyza_ 28 LDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICKK---CEDNVFNILNNMALN 97 (276)
T ss_dssp TTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTT---THHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhC---CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhccccc---cccchHHHHHHHHhc
Confidence 34555 7777887776553 2333777777765 4578999999999998865441 12222222 233478
Q ss_pred CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc---------CCCCh------
Q 007424 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA---------QDPDA------ 157 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a---------~d~i~------ 157 (604)
|+++.||.+++.+++.++..... ....++..+...+ .+.++.++..|+.++..+.+.. .+...
T Consensus 98 d~~~~vr~~a~~aL~~~~~~~~~-~~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 175 (276)
T d1oyza_ 98 DKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITA-FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWA 175 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHccccch-hhHHHHHHHHHHh-cCcchHHHHHHHHHHhhcchHHHHHHHHHhcccccchhhhhH
Confidence 99999999999999998876421 1112444444444 6677778877777664432211 11100
Q ss_pred --------hhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007424 158 --------GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (604)
Q Consensus 158 --------~yL~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~L 229 (604)
.......+.+.+.+.+++..++..++.+++. .+. ...++.|.+.|.++ .+|..|+.+|+.|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~------~~~~~~L~~~l~d~--~vr~~a~~aL~~i 244 (276)
T d1oyza_ 176 AFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY---RKD------KRVLSVLCDELKKN--TVYDDIIEAAGEL 244 (276)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH---TTC------GGGHHHHHHHHTSS--SCCHHHHHHHHHH
T ss_pred HHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccch---hhh------hhhHHHHHHHhCCh--HHHHHHHHHHHHc
Confidence 0012234446666777777776666555553 221 23456666666554 4889999999987
Q ss_pred HHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHHHH
Q 007424 230 AVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKMIE 268 (604)
Q Consensus 230 A~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~ 268 (604)
+. +...|+ ..+.|. -|+-..||.+|.++|.
T Consensus 245 g~---~~~~~~---L~~~l~---~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 245 GD---KTLLPV---LDTMLY---KFDDNEIITSAIDKLK 274 (276)
T ss_dssp CC---GGGHHH---HHHHHT---TSSCCHHHHHHHHHHT
T ss_pred CC---HHHHHH---HHHHHc---cCCCHHHHHHHHHHHc
Confidence 42 222222 233443 3456789999888874
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=3.1e-07 Score=94.64 Aligned_cols=249 Identities=8% Similarity=0.058 Sum_probs=170.5
Q ss_pred ChhHHHHHHHHHHHHHhh---------cCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHH
Q 007424 18 DRDTYSQAAKELDSIAAT---------VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN 85 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~---------L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~ 85 (604)
|.+....|+..+..+... +....+|.|+..+.. +.++..+.+++.+|+.++.+. .....+ .-+++
T Consensus 89 ~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~---~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~ 165 (503)
T d1wa5b_ 89 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP 165 (503)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST---TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChH
Confidence 555777888888776531 122236777777653 234568999999999998765 111111 23688
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-ChhhH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKL 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~-i~~yL 160 (604)
.++..|.+++..|+..|+++++.|+..-.+. .+. .++++|+..+ .+.+..++..++.+|..++..-... .....
T Consensus 166 ~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~ 244 (503)
T d1wa5b_ 166 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244 (503)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchHHHHH
Confidence 8899999999999999999999998764321 111 2677777766 6677788999999999999764322 23456
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc-CCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchh
Q 007424 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (604)
Q Consensus 161 ~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf-~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~ 238 (604)
..+++-|.++|.+.+..+...++.+++.++...... ...+ ..+++.|..++.++++.++..|+.+|+.|+....+...
T Consensus 245 ~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~ 324 (503)
T d1wa5b_ 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 324 (503)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 678899999999998888888888888877533221 1111 23678899999999999999999999999863332221
Q ss_pred hh-hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 239 EF-KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 239 py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
-. ...++..|..+-.+.-+.||..+.-+|.-.
T Consensus 325 ~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl 357 (503)
T d1wa5b_ 325 VVINAGVLPALRLLLSSPKENIKKEACWTISNI 357 (503)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11 123445555444456677888777777544
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=4.8e-07 Score=89.96 Aligned_cols=251 Identities=14% Similarity=0.129 Sum_probs=163.5
Q ss_pred ChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCCC-CCCchhHHHHHHHHHHHhhh---cccccHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH---NLSPYITKIIN 85 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L--------~pe~ip~fL~~L~e~~ss-~kp~~RKaaI~lLGvLae~h---~i~p~L~kIl~ 85 (604)
|.+-...|+..|-.|+.+- ....++.++..+...... .+...-+.+..++..++... ....+...+++
T Consensus 112 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 191 (434)
T d1q1sc_ 112 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHH
Confidence 3446667777777776431 334477777777543221 11122234445566665543 22235778999
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccc-h---hHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhH-
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-A---FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-~---~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL- 160 (604)
.+++.+.++|+.++..|+++++.++..-.+. . ...++++|++.+ .+.++.++..|+.||..++.+.++ ...++
T Consensus 192 ~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll-~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~ 269 (434)
T d1q1sc_ 192 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDE-QTQKVI 269 (434)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred HHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc-ccchhhhhhchhhhhhhHHhhhhH-HHHHHH
Confidence 9999999999999999999999998764221 1 112778888877 566888999999999888754221 11222
Q ss_pred -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-cc
Q 007424 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DA 236 (604)
Q Consensus 161 -~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf--~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g-e~ 236 (604)
..+++.|.++|++++..++..++.+++.++........++ ..+++.+...+.+.++.+|..|+.+|+.++.... +.
T Consensus 270 ~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~ 349 (434)
T d1q1sc_ 270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 349 (434)
T ss_dssp HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHH
Confidence 2256678899999988899888888887765332221111 2367888888889999999999999999987654 32
Q ss_pred hhhh-hhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 237 VPEF-KGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 237 f~py-~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
+... ...++..|-..=-++-..++..+.++|..+
T Consensus 350 ~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~l 384 (434)
T d1q1sc_ 350 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384 (434)
T ss_dssp HHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2211 122334333333356677888888887654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=9.9e-08 Score=91.78 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHHhhhcccc---cHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhcc-c-hh--HHHHHHHHHHHc
Q 007424 58 GVRKECIHVIATLSNSHNLSP---YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-S-AF--VTMLKLLSDALF 130 (604)
Q Consensus 58 ~~RKaaI~lLGvLae~h~i~p---~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d-~-~~--~sllkPL~eaL~ 130 (604)
..|..++.+|..+++.-..+- .+.-+.+.|...|.++++.||..++++|+.++.+-.. + .+ ...+++|+..|.
T Consensus 32 ~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~ 111 (264)
T d1xqra1 32 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 111 (264)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh
Confidence 678899999999986641111 2333444455678899999999999999999986432 1 11 127899999886
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCChhh-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCc-CCchH-HHHHHH
Q 007424 131 TEQDTNAQVGAALCLAATIDAAQDPDAGK-LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLK-GLVSCL 207 (604)
Q Consensus 131 ~eqdk~vQ~~AA~cLaalIE~a~d~i~~y-L~~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f-~pyf~-~lm~~L 207 (604)
.+.++.++..|+.||..++..-+...... -...++-|.++|++++..++..++.+|+.++...... ..+.. ..+|.|
T Consensus 112 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L 191 (264)
T d1xqra1 112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 191 (264)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHH
Confidence 57788899999999999986543211111 1225677889999999999988889999877533222 12222 368999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHH
Q 007424 208 LGFLSSQDWAARKAAAEALWRLAVV 232 (604)
Q Consensus 208 ~e~L~s~Dw~lRkaAaDaLg~LA~~ 232 (604)
.+.|.+++-.+|..|+.+|+.|+..
T Consensus 192 ~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 192 VALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999863
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.2e-06 Score=90.54 Aligned_cols=218 Identities=14% Similarity=0.085 Sum_probs=157.4
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccc
Q 007424 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP 78 (604)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~lA~~L-------~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p 78 (604)
..++..|.+-.|.+.++.|+..|-.|+.+- ....+|+++.+|. ++++..++.++.+|+.++... ....
T Consensus 62 ~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~----~~~~~v~~~a~~aL~~l~~~~~~~~~ 137 (529)
T d1jdha_ 62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhC----CCCHHHHHHHHHHHHHhhcccchhhh
Confidence 345566666678889999999998876532 2223788888875 456789999999999998776 2222
Q ss_pred c--HHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccch--hH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007424 79 Y--ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 79 ~--L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~--~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
. -...++.+++.|++++..++..++.+++.++..-.+.. +. ..+.+|+..|.......++..++.+|..+...
T Consensus 138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~- 216 (529)
T d1jdha_ 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC- 216 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-
Confidence 2 34467889999999999999999999999986532211 11 16888888886555667777888888766432
Q ss_pred CCCChhhHH--HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007424 153 QDPDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (604)
Q Consensus 153 ~d~i~~yL~--~L~~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA 230 (604)
+.....+- ..++.|.++|.+++..++..++.++..+...... ......+++.|.+.+.++|..+|..|+.+|+.|+
T Consensus 217 -~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~-~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 217 -SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp -TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc-hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence 22222221 2677889999999888887777777766543322 2234578999999999999999999999999987
Q ss_pred H
Q 007424 231 V 231 (604)
Q Consensus 231 ~ 231 (604)
.
T Consensus 295 ~ 295 (529)
T d1jdha_ 295 C 295 (529)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.7e-07 Score=90.03 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCC-------CChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccH--HHHHHHH
Q 007424 18 DRDTYSQAAKELDSIAATVDP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (604)
Q Consensus 18 DrDT~r~A~~eLD~lA~~L~p-------e~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L--~kIl~~I 87 (604)
|.+....|+..|..++.+.+. -.+++++.++.. ++++.+|..++.+||.++... .+...+ ..++|.+
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~---s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE---AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 455777788888888765431 226777765543 566899999999999999765 222222 3567888
Q ss_pred Hhhcc-CCChhHHHHHHHHHHhhhhhhccch--hHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 007424 88 TRNFR-DKNSALQATCISTVSSLSPRVGASA--FVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (604)
Q Consensus 88 vrrLk-DpDs~VR~Ac~~aLg~LAe~l~d~~--~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~ 162 (604)
++.|. |+++.||..|+.|++.++.+-.... +.. .+++|+..| .+.+..++..++.+|..++...++....+...
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 88884 7889999999999999987753211 111 588888888 56788899999999999987644332223322
Q ss_pred -HHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 007424 163 -MEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (604)
Q Consensus 163 -L~~RL~klL~s~~~kaK~alLsaIGSiA~ 191 (604)
.++.|+.+|++++..++..++.+++.++.
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998874
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.7e-06 Score=89.26 Aligned_cols=257 Identities=13% Similarity=0.083 Sum_probs=164.7
Q ss_pred HHHHHHHHHhhhc---CChhHHHHHHHHHHHHHhhc-------C-CCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHh
Q 007424 4 ALKTSVNGLLNKL---SDRDTYSQAAKELDSIAATV-------D-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN 72 (604)
Q Consensus 4 eLk~rvl~~L~KL---sDrDT~r~A~~eLD~lA~~L-------~-pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae 72 (604)
++..+.+..|.+| .|....+.|+..|..|+.+- . +.-++.++..|... .++..++.++.+|..++.
T Consensus 13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~ 89 (529)
T d1jdha_ 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSH 89 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC
Confidence 3444545545544 34558899999999988642 1 22267777777542 346789999999999976
Q ss_pred hh----cccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc--hh--HHHHHHHHHHHccCCChhHHHHHHHH
Q 007424 73 SH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AF--VTMLKLLSDALFTEQDTNAQVGAALC 144 (604)
Q Consensus 73 ~h----~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~--~sllkPL~eaL~~eqdk~vQ~~AA~c 144 (604)
.. .+..+ ..+|.+++.|+++++.|+..|+.+|+.|+..-... .+ ...+++|+..| .+.++.++..++.|
T Consensus 90 ~~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~ 166 (529)
T d1jdha_ 90 HREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDC 166 (529)
T ss_dssp SHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHH
T ss_pred CchhHHHHHHC--CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHH
Confidence 44 22121 35789999999999999999999999998764321 11 12788888877 67788999999999
Q ss_pred HHHHHhhcCCCChhhH-HHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCch-HHHHHHHHhhhcCCcHHHHHH
Q 007424 145 LAATIDAAQDPDAGKL-GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGL-KGLVSCLLGFLSSQDWAARKA 221 (604)
Q Consensus 145 LaalIE~a~d~i~~yL-~~L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf-~~lm~~L~e~L~s~Dw~lRka 221 (604)
|..+...-.+...... ....+.|..+|.+. .-.++..+..++.-++.....-.+.+ ...++.|...+.+.+..++..
T Consensus 167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~ 246 (529)
T d1jdha_ 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhh
Confidence 9988764221111111 12456677777655 34566666666665443211111111 136788999999999999999
Q ss_pred HHHHHHHHHHHcCc--chhhhhhHHHHHHHhccCcchhHHHHHHHHHHHHH
Q 007424 222 AAEALWRLAVVEKD--AVPEFKGKCLKIFESKRFDKVKVVREVMNKMIEAW 270 (604)
Q Consensus 222 AaDaLg~LA~~~ge--~f~py~~~~i~~Le~cRfDKvK~VRda~~~AL~~w 270 (604)
|+.+|..++..... .........++.|+ +.-..||..+..+|.-+
T Consensus 247 a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~----~~~~~~~~~a~~~L~~l 293 (529)
T d1jdha_ 247 CLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNL 293 (529)
T ss_dssp HHHHHHHHHTTCTTCSCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHH
T ss_pred hhhHHHhccccccchhhhhhcchhhhhhcc----cccHHHHHHHHHHHHhh
Confidence 99999988764432 22233344444444 34456887777776544
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.48 E-value=1.5e-08 Score=85.69 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=72.2
Q ss_pred ccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 007424 91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (604)
Q Consensus 91 LkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~kl 170 (604)
|.|+++.||.+|.++||.+... .+.+|+.+| .+.++.++..|+.||..+.. +..++.|.++
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~~--------~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~ 61 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGDE--------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKL 61 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSST--------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCHH--------HHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHHHHhh
Confidence 5677777777777777766543 245666665 56677777777776643321 3445666777
Q ss_pred hcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 007424 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALW 227 (604)
Q Consensus 171 L~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg 227 (604)
|++++..++.+++.++|-+ |. +..++.|..++.++++.+|.+|+.+|.
T Consensus 62 l~d~~~~VR~~a~~aL~~i---~~------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 62 LEDDSGFVRSGAARSLEQI---GG------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHCCTHHHHHHHHHHHHH---CS------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hccchhHHHHHHHHHHHHh---Cc------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777777777777777633 22 356777777777788888888887764
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.25 E-value=2.2e-07 Score=78.24 Aligned_cols=108 Identities=11% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCCCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC
Q 007424 53 SSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE 132 (604)
Q Consensus 53 ss~kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e 132 (604)
+++++.+|++++.+||.+.. +.++.+++.|.|+++.||.+++++||.+... ..+++|...| .+
T Consensus 2 ~D~~~~VR~~A~~aL~~~~~---------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-------~~~~~L~~~l-~d 64 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-------RAVEPLIKLL-ED 64 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCSS---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------HHHHHHHHHH-HH
T ss_pred CCcCHHHHHHHHHHHHHhCH---------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-------hhHHHHHhhh-cc
Confidence 45678999999999886532 2345677899999999999999999987654 3677888877 67
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 007424 133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (604)
Q Consensus 133 qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIG 187 (604)
.++.|+..|+.||..+.. +...+-|.++|++++..++.+++.++.
T Consensus 65 ~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 65 DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred chhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788999999999987632 456777888999999999988777664
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=6.3e-05 Score=81.87 Aligned_cols=206 Identities=9% Similarity=0.045 Sum_probs=138.0
Q ss_pred HHHHHhhhhcCCCC---CCchhHHHHHHHHHHHhhhcccccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc--
Q 007424 42 PTFLSCILSTNSSD---KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-- 116 (604)
Q Consensus 42 p~fL~~L~e~~ss~---kp~~RKaaI~lLGvLae~h~i~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~-- 116 (604)
+.|...+.+...+. .+..|..++.++|..+.. ...++++.+++.+++.|.|++..||..|+.|+..+.+...+.
T Consensus 454 ~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~ 532 (959)
T d1wa5c_ 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (959)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhccccc
Confidence 44555554443333 345666666666665442 456789999999999999999999999999999998865431
Q ss_pred -----------h-hHHHHHHHHHHHccCCChh----HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHh----cCC-c
Q 007424 117 -----------A-FVTMLKLLSDALFTEQDTN----AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL----KSE-V 175 (604)
Q Consensus 117 -----------~-~~sllkPL~eaL~~eqdk~----vQ~~AA~cLaalIE~a~d~i~~yL~~L~~RL~klL----~s~-~ 175 (604)
| +..++..|+..+....... .......||..+++..++.+.+|...+++.|..++ +++ +
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 612 (959)
T d1wa5c_ 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (959)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred chhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1 1124444555553221111 12346778899999999988899988888887665 233 4
Q ss_pred hhHHHHHHHHHHHHHhcC-cC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---cchhhhhhHHHHHH
Q 007424 176 FKAKAAGLVVVGSVIGSG-AV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLKIF 248 (604)
Q Consensus 176 ~kaK~alLsaIGSiA~ag-~~-f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~g---e~f~py~~~~i~~L 248 (604)
......+..+|+.++... .. +..+.+.++|.+...+..+.....-.+.+.+..+....+ +.+.++...++...
T Consensus 613 ~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 690 (959)
T d1wa5c_ 613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPN 690 (959)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGG
T ss_pred hHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHH
Confidence 556677888999988743 33 235667788888888877666666778888888877543 45555544444433
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00021 Score=68.45 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=83.5
Q ss_pred hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh-cccccHHH--HHHHHHhhccCCChhHHHHHHHHHHhhhhhhccc-
Q 007424 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITK--IINSITRNFRDKNSALQATCISTVSSLSPRVGAS- 116 (604)
Q Consensus 41 ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h-~i~p~L~k--Il~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~- 116 (604)
||.++..|. +++|.++.++..+|+.+|.+. -....+-+ .+|.+++.|++++..||.+|+.+|+.|+..-.+.
T Consensus 4 ip~lv~~L~----~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 4 IPKAVQYLS----SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp HHHHHHHHH----SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 788888886 567899999999999998765 22233332 4788899999999999999999999998543211
Q ss_pred -hhH--HHHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007424 117 -AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (604)
Q Consensus 117 -~~~--sllkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a 152 (604)
.+. ..+++|+..+....++.++..|+.+|..+.+..
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~ 118 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence 111 157888888866678889999999999998753
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.00022 Score=68.32 Aligned_cols=146 Identities=13% Similarity=0.026 Sum_probs=96.6
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHhhhhhhccc--hhHH--HHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCChhh
Q 007424 84 INSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (604)
Q Consensus 84 l~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~--~~~s--llkPL~eaL~~eqdk~vQ~~AA~cLaalIE~a~d~i~~y 159 (604)
||.+++.|+++++.|+..++.+|+.|+..-.+. .+.. .+++|+..| .+.++.+|..|+.||..+...-++ ....
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~-~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTT-NKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH-HHHH
Confidence 789999999999999999999999998542221 1111 689999887 678889999999999999742211 1111
Q ss_pred HHH--HHHHHHHHhcCC-chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh----------------cCCcHHHHH
Q 007424 160 LGR--MEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL----------------SSQDWAARK 220 (604)
Q Consensus 160 L~~--L~~RL~klL~s~-~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L----------------~s~Dw~lRk 220 (604)
+.+ .++.|++++.+. +..++..++.++..++.............++.+...+ ...+..++.
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 211 367788888654 6668888888888877533221112222222222222 234677888
Q ss_pred HHHHHHHHHHH
Q 007424 221 AAAEALWRLAV 231 (604)
Q Consensus 221 aAaDaLg~LA~ 231 (604)
.|+.+|..++.
T Consensus 162 ~a~~~l~~~~~ 172 (457)
T d1xm9a1 162 NATGCLRNLSS 172 (457)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 88888877664
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.98 E-value=6e-05 Score=72.88 Aligned_cols=44 Identities=27% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcchhhhhhHHHHHHHhccCcchhHHHHHHHHH
Q 007424 205 SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDKVKVVREVMNKM 266 (604)
Q Consensus 205 ~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~~i~~Le~cRfDKvK~VRda~~~A 266 (604)
+.|..++.+++|.+|.++++.++ ...+..|. |....||+++.+.
T Consensus 189 ~~L~~l~~D~d~~VR~aaae~~~--------------~~ll~~L~----D~d~~VR~aA~~~ 232 (233)
T d1lrva_ 189 DDLLELLHDPDWTVRLAAVEHAS--------------LEALRELD----EPDPEVRLAIAGR 232 (233)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC--------------HHHHHHCC----CCCHHHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHHHhcc--------------HHHHHHhC----CCCHHHHHHHHHh
Confidence 34666677788888888775432 12345554 8888888887653
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.95 E-value=0.017 Score=57.73 Aligned_cols=205 Identities=11% Similarity=0.083 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhh------cccccHHHHHHHHHhhcc
Q 007424 21 TYSQAAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSPYITKIINSITRNFR 92 (604)
Q Consensus 21 T~r~A~~eLD~lA~~L~pe~--ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h------~i~p~L~kIl~~IvrrLk 92 (604)
+..-|.+.|-.++...-|.. +..++..+.......++..|+.+++.||.|+.-+ .-..+++.+...+.+.+.
T Consensus 103 s~~ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~ 182 (336)
T d1lsha1 103 TSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD 182 (336)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence 33445566666766554443 5666665543333346889999999999996655 224467777778888888
Q ss_pred CCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccC------CChhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 007424 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE------QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (604)
Q Consensus 93 DpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~e------qdk~vQ~~AA~cLaalIE~a~d~i~~yL~~L~~R 166 (604)
..|..-..++++|||.+... ..++.|...+.++ ....++..|..||.++....+ .++-+-
T Consensus 183 ~~~~~~~~~~LkaLGN~g~p-------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p-------~~v~~~ 248 (336)
T d1lsha1 183 RAKEEEIVLALKALGNAGQP-------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-------RKVQEI 248 (336)
T ss_dssp TTCHHHHHHHHHHHHHHTCG-------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-------HHHHHH
T ss_pred ccchHHHHHHHHHHhccCCH-------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCc-------HHHHHH
Confidence 88888899999999999754 2345555555332 245688888888876644321 223334
Q ss_pred HHHHhcCC--chhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCcchhhhhhH
Q 007424 167 LERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGK 243 (604)
Q Consensus 167 L~klL~s~--~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~-s~Dw~lRkaAaDaLg~LA~~~ge~f~py~~~ 243 (604)
+..++.+. +..+|-+++.++- .. .|.. ..+..|..++. +.+.+++....-.|-.|+..-......++.-
T Consensus 249 l~~i~~n~~e~~EvRiaA~~~lm---~t----~P~~-~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~~~la~~ 320 (336)
T d1lsha1 249 VLPIFLNVAIKSELRIRSCIVFF---ES----KPSV-ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAA 320 (336)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH---HT----CCCH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHH---hc----CCCH-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 44555444 6777766555443 21 1332 46677777774 5689999999999999988665555555544
Q ss_pred HHHH
Q 007424 244 CLKI 247 (604)
Q Consensus 244 ~i~~ 247 (604)
|-.+
T Consensus 321 a~~a 324 (336)
T d1lsha1 321 CSVA 324 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.30 E-value=0.0024 Score=61.30 Aligned_cols=140 Identities=18% Similarity=0.115 Sum_probs=73.6
Q ss_pred HHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHccCCChhHHHHHHHHHH--HHHhhcCCCChhhHHHH
Q 007424 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLA--ATIDAAQDPDAGKLGRM 163 (604)
Q Consensus 86 ~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~eqdk~vQ~~AA~cLa--alIE~a~d~i~~yL~~L 163 (604)
.+.+.++|+|+.||.+++..|+. + .+..|..+.++.|...++..|. .+..-+.|.. .++...
T Consensus 70 ~L~~Ll~D~d~~VR~~AA~~Lp~--~-------------~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d-~~VR~~ 133 (233)
T d1lrva_ 70 ALTPLIRDSDEVVRRAVAYRLPR--E-------------QLSALMFDEDREVRITVADRLPLEQLEQMAADRD-YLVRAY 133 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSCS--G-------------GGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSS-HHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHcCH--H-------------HHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCC-HHHHHH
Confidence 34456899999999999876541 1 1223335556666655554431 0000011111 001000
Q ss_pred -H-----HHHHHHhcCCchhHHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCcch
Q 007424 164 -E-----VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (604)
Q Consensus 164 -~-----~RL~klL~s~~~kaK~alLsaIGSiA~ag~~f~pyf~~lm~~L~e~L~s~Dw~lRkaAaDaLg~LA~~~ge~f 237 (604)
. +-|..++++++..++.+++..++ .+.|..++.++++.+|..+++.|+. +
T Consensus 134 aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~----------------~~~L~~l~~D~d~~VR~~aa~~L~~------~-- 189 (233)
T d1lrva_ 134 VVQRIPPGRLFRFMRDEDRQVRKLVAKRLP----------------EESLGLMTQDPEPEVRRIVASRLRG------D-- 189 (233)
T ss_dssp HHHHSCGGGGGGTTTCSCHHHHHHHHHHSC----------------GGGGGGSTTCSSHHHHHHHHHHCCG------G--
T ss_pred HHhccchhHHHHHhcCCCHHHHHHHHHhcC----------------HHHHHHHccCCCHHHHHHHHHhcCc------H--
Confidence 0 01234445555555544332111 1346667778899999999877641 2
Q ss_pred hhhhhHHHHHHHhccCcchhHHHHHHHHHH--HHHHhCC
Q 007424 238 PEFKGKCLKIFESKRFDKVKVVREVMNKMI--EAWKQVP 274 (604)
Q Consensus 238 ~py~~~~i~~Le~cRfDKvK~VRda~~~AL--~~wK~i~ 274 (604)
.|...--|+-..||-++.+.+ ++++.+.
T Consensus 190 ---------~L~~l~~D~d~~VR~aaae~~~~~ll~~L~ 219 (233)
T d1lrva_ 190 ---------DLLELLHDPDWTVRLAAVEHASLEALRELD 219 (233)
T ss_dssp ---------GGGGGGGCSSHHHHHHHHHHSCHHHHHHCC
T ss_pred ---------HHHHHHhCCCHHHHHHHHHhccHHHHHHhC
Confidence 122222399999999988763 4455554
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=95.20 E-value=0.39 Score=47.38 Aligned_cols=167 Identities=14% Similarity=0.113 Sum_probs=96.8
Q ss_pred HHHHHHHHHhhhcC-------ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCchhHHHHHHHHHHHhhhcc
Q 007424 4 ALKTSVNGLLNKLS-------DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNL 76 (604)
Q Consensus 4 eLk~rvl~~L~KLs-------DrDT~r~A~~eLD~lA~~L~pe~ip~fL~~L~e~~ss~kp~~RKaaI~lLGvLae~h~i 76 (604)
++..++...|+.|. ..|+. .-+..|-.+.+.++.++|..+...+.. ++..|+--+-+|+.+.....
T Consensus 17 ~~~~~~~~~l~~L~~~~~~~v~~~~~-~kF~~Lv~~lR~~~~e~l~~v~~~~~~-----~~~~r~~~lDal~~~GT~~a- 89 (336)
T d1lsha1 17 NLESEIHTVLKHLVENNQLSVHEDAP-AKFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATSEA- 89 (336)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCCTTHH-HHHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSHHH-
T ss_pred CHHHHHHHHHHHHHHhcccccCcchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc-----ChhHHHHHHHHHHHhCCHHH-
Confidence 45555555555551 12232 223456667777787777777766642 34567766666666644331
Q ss_pred cccHHHHHHHHHhhccCCChhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhc-
Q 007424 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAA- 152 (604)
Q Consensus 77 ~p~L~kIl~~IvrrLkDpDs~VR~Ac~~aLg~LAe~l~d~~~~sllkPL~eaL~~---eqdk~vQ~~AA~cLaalIE~a- 152 (604)
+.+|.+.|...+-..-.|.. .+..++.. .. |-..++.-+++.+.. .+++.+...+.+++.++|-..
T Consensus 90 -------~~~i~~~I~~~~ls~~ea~~-~l~~l~~~-~~-Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c 159 (336)
T d1lsha1 90 -------LLFLKRTLASEQLTSAEATQ-IVASTLSN-QQ-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC 159 (336)
T ss_dssp -------HHHHHHHHHTTCSCHHHHHH-HHHHHHHT-CC-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCCCHHHHHH-HHHHHhcc-CC-CCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence 12333444444443334433 34444433 22 322344444444422 346778889999999888773
Q ss_pred ---CCCChhhHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 007424 153 ---QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (604)
Q Consensus 153 ---~d~i~~yL~~L~~RL~klL~s~~~kaK~alLsaIG 187 (604)
++-..++++.+...+.+.++..+..-+...|-+||
T Consensus 160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 197 (336)
T d1lsha1 160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALG 197 (336)
T ss_dssp TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence 22234677778888888888888777777777877
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=13 Score=36.14 Aligned_cols=154 Identities=12% Similarity=0.201 Sum_probs=104.4
Q ss_pred hHHHHHhh-hhcCCCCCCchhH-HHHHHHHHHHhhh--cccccHHHHHHHHH----hhccC---CChhHHHHHHHHHHhh
Q 007424 41 LPTFLSCI-LSTNSSDKPGVRK-ECIHVIATLSNSH--NLSPYITKIINSIT----RNFRD---KNSALQATCISTVSSL 109 (604)
Q Consensus 41 ip~fL~~L-~e~~ss~kp~~RK-aaI~lLGvLae~h--~i~p~L~kIl~~Iv----rrLkD---pDs~VR~Ac~~aLg~L 109 (604)
+|+++..+ .||..+ -|..|. +.+.+++.++.-. .+.++++.|+..|. .-+++ .-|-.|..--.=|.++
T Consensus 71 i~pl~~~vL~DY~~~-~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i 149 (321)
T d1w9ca_ 71 VPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp HHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-chhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHH
Confidence 68888754 777665 477884 6668888887755 77899999988776 33333 3467888888888888
Q ss_pred hhhhccch--h-HHHHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--C-----hhhHHHHHHHHHHHhcCC--
Q 007424 110 SPRVGASA--F-VTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--D-----AGKLGRMEVRLERLLKSE-- 174 (604)
Q Consensus 110 Ae~l~d~~--~-~sllkPL~eaL~---~eqdk~vQ~~AA~cLaalIE~a~d~--i-----~~yL~~L~~RL~klL~s~-- 174 (604)
..++...= . ..-++-+++++. .+.++.+...+..+|..++.+.... . ..|+-.++..++.++...
T Consensus 150 ~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~H 229 (321)
T d1w9ca_ 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChhH
Confidence 87775410 0 013445555542 5778889888888888888764221 1 245666777888877633
Q ss_pred --chhHHHHHHHHHHHHHhcCcC
Q 007424 175 --VFKAKAAGLVVVGSVIGSGAV 195 (604)
Q Consensus 175 --~~kaK~alLsaIGSiA~ag~~ 195 (604)
+|+....++..+-.++..+..
T Consensus 230 k~gf~~q~~iL~~Lf~ive~~~i 252 (321)
T d1w9ca_ 230 TAGLTMHASILAYMFNLVEEGKI 252 (321)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 777778888888888865543
|