Citrus Sinensis ID: 007426

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
Protein Sequence
MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFEKGSGSVIGSNFGRDHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISYSSHHEINDSGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTDFSEKQSRRFRSPSSIKYEQSPTPRRNGFSREVFYDVKRNGNLHNEDEQLQGVSESVSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHEEcccccccEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccc
Coil and Loop (DISEMBL)
MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSetkengsvsgEYTISLYEVLARVhganivpqiDSIMTTITKTLassagsfplqqacSRVVpaiarygidpttpedkkrhIIHSLCkplsdsllgsqesLTAGAALCLKALvdsdnwrfaSDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRilnagpgeanSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAaengpkfekgsgsvigsnfgrdhnrrrnllngdnrspssmspesqtlnsfaeydsfiespvsmsqlscdteydcrsvnrnvNRKLWSFenggvdvslkdglysvvqgspirsisysshheindsggdytdeftgffqrsprdratrsttpspqrshshinvdnigifttpRRLIRSLQDVNtdfsekqsrrfrspssikyeqsptprrngfsreVFYDVkrngnlhnedeqlqgvsesvsstddgpisddmqVTQQVVSGNKTEIQKLcaketppktaFKLVFGLFFILVAIFTSLFlidgqenghhlvpt
Flexible Loop (DISEMBL)
MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVsetkengsvsgEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIdpttpedkkrHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAengpkfekgsgsvigsnfgrdhnrrrnllngdnrspssmspeSQTLNSFAEYDSFIESPVSMSQLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISYSSHHEINDSGGDYTDEFTGFFqrsprdratrsttpspqrshshinvdnigifTTPRRLIRSLQDvntdfsekqsrrfrspssikyeqsptprrngfsrEVFYDVKRNgnlhnedeqlqGVSESVSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Low Complexity Region (SEG)
MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFEKGSGSVIGSNFgrdhnrrrnllngdnrSPSSMSPESQTLNSFAEYDSFIESPVSMSQLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISYSSHHEINDSGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTDFSEKQSRRFRSPSSIKYEQSPTPRRNGFSREVFYDVKRNGNLHNEDEQLQGVSESVSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Disordered region (IsUnstruct)
********************************YVKDLDSKAIPLFLAQVSE****GSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTT****KRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALE******NSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASL*****************************************************************FI*******QLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISY*******************************************INVDNIGIFTTPRRLIRSL*****************************************************************************************KLCAKETPPKTAFKLVFGLFFILVAIFTSLFLIDG**********
Disordered Region (DISOPRED)
***********************KSAMKALKSYVKDLDSKAIPLFLAQ***************ISLYEVLARVHGANIVPQIDSIMTTITKTLA******PLQQACSRVVPAIARYGI***********IIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT*******************************************************************************************************************************************************************************************************************************************************************************************FKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Disordered Region (DISEMBL)
MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFEKGSGSVIGSNFGRDHNRRRNLLNGD************TLNSFAEYDSFIESPVSMSQLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISYSSHHEINDSGGDYTDEFTGFFQRS*****************SHINVDNIGIFTTPRRLIRSLQDVN**************************RNGFSREVFYDVKRNGNLHNEDE***************PISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Disordered Region (DISPRO)
*********RQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAEN********************************************N**AEYDSFIESPVSMSQLSCDTEYDCRSVNRNVNRKLW*FENGGVDVSLKDGLYSVVQG*********SHH***DSGGDYTDEFTGFFQRS******************HINVDNIGIFTTPRRLIRSLQDV*******************************************************************************************ETPPKTAFKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFEKGSGSVIGSNFGRDHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISYSSHHEINDSGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTDFSEKQSRRFRSPSSIKYEQSPTPRRNGFSREVFYDVKRNGNLHNEDEQLQGVSESVSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFLIDGQENGHHLVPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
224125878	609	predicted protein [Populus trichocarpa]	0.986	0.978	0.698	0.0
255568936	603	conserved hypothetical protein [Ricinus	0.983	0.985	0.699	0.0
224144783	609	predicted protein [Populus trichocarpa]	0.991	0.983	0.693	0.0
225441635	615	PREDICTED: uncharacterized protein LOC10	0.990	0.972	0.657	0.0
147768693	615	hypothetical protein VITISV_016185 [Viti	0.990	0.972	0.652	0.0
297739751	723	unnamed protein product [Vitis vinifera]	0.958	0.800	0.632	0.0
449459646	624	PREDICTED: uncharacterized protein LOC10	0.988	0.956	0.633	0.0
356559542	609	PREDICTED: uncharacterized protein LOC10	0.985	0.977	0.621	0.0
356560382	590	PREDICTED: uncharacterized protein LOC10	0.948	0.971	0.587	1e-179
22330247	560	ARM repeat-containing protein [Arabidops	0.910	0.982	0.586	1e-176

>gi|224125878|ref|XP_002319697.1| predicted protein [Populus trichocarpa] gi|222858073|gb|EEE95620.1| predicted protein [Populus trichocarpa]

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/617 (69%), Positives = 490/617 (79%), Gaps = 21/617 (3%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSPILRQELANLDKDADSRKSAMKALKSYVK LDSK+IP FLAQVSETKE GS+SG
Sbjct: 1   MGRNLSPILRQELANLDKDADSRKSAMKALKSYVKSLDSKSIPQFLAQVSETKETGSLSG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYEVLARVHG NIVPQIDSIMTTI KTLASSAG FPLQQACS+VVPAIARYGI+P
Sbjct: 61  EYTISLYEVLARVHGVNIVPQIDSIMTTIIKTLASSAGYFPLQQACSKVVPAIARYGIEP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTPEDKKRHIIHSLCKPLS++LLGSQE LT+GAALCLKALVDSDNWRFASDEMVN+VCQN
Sbjct: 121 TTPEDKKRHIIHSLCKPLSEALLGSQECLTSGAALCLKALVDSDNWRFASDEMVNRVCQN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VA ALEEK TQTNSHM LVMALAKHNALIVEAY RLLIQSGLRIL AG  E NSQKRL A
Sbjct: 181 VAVALEEKCTQTNSHMALVMALAKHNALIVEAYVRLLIQSGLRILKAGVLEGNSQKRLSA 240

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLMK LDPRSIFSELELIIE M+ CQSDQMA+V GA+ EALQTAK+IA E G KF
Sbjct: 241 IQMINFLMKCLDPRSIFSELELIIEEMDKCQSDQMAFVSGAAFEALQTAKKIATEKGTKF 300

Query: 301 EKGSGSVIGSNFG-RDHNRRRNLLNG-DNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQ 358
           EK SGSV GSNFG RDH  RRNL +   ++SP+S+SPESQTL+ F EY+SF ESP+S + 
Sbjct: 301 EKSSGSVSGSNFGRRDHRGRRNLSSAYGDQSPASVSPESQTLDFFMEYESFTESPISTTN 360

Query: 359 LS---CDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYS-VVQGSPIRS--ISYSSHH 412
           +S   CD          +VNRKLWSFENGGVD+SLKDGL+S + QGSPI       S  +
Sbjct: 361 VSSNECD--------RGSVNRKLWSFENGGVDISLKDGLFSELSQGSPIHDPFSDQSGLY 412

Query: 413 EINDSGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQD 472
           E+ ++GG Y  EF GF  RSPR++ +RSTTPSPQRS SHINVDNI IFTTPR+L+R+LQD
Sbjct: 413 ELTENGGSYMGEFAGFLPRSPRNKLSRSTTPSPQRSRSHINVDNISIFTTPRKLVRALQD 472

Query: 473 VN---TDFSEKQSRRFRSPSSIKYEQSPTPR--RNGFSREVFYDVKRNGNLHNEDEQLQG 527
            N   +DFSEKQ+ RF SP   K++ SPTPR  RNGF  +V  +V  NG  +   E+ QG
Sbjct: 473 PNDLDSDFSEKQNGRFESPCPSKFDYSPTPRLKRNGFQHDVGLEVDENGKSYTGVEEFQG 532

Query: 528 VSESVSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFT 587
            SESV+STDD P+  D+Q + +V+ GNK    K C ++   KT+  L  G +  L+ IF 
Sbjct: 533 ASESVASTDDIPVKTDVQASPEVIRGNKPYANKFCTEKDARKTSSILAVGFWIALLVIFA 592

Query: 588 SLFLIDGQENGHHLVPT 604
           SL  I  Q++ HH+VPT
Sbjct: 593 SLKCIYLQDDDHHMVPT 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568936|ref|XP_002525438.1| conserved hypothetical protein [Ricinus communis] gi|223535251|gb|EEF36928.1| conserved hypothetical protein [Ricinus communis]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/613 (69%), Positives = 494/613 (80%), Gaps = 19/613 (3%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSP+LR+EL NLDKDADSR+SAM+ALKSYVKDLDSKAIPLFLAQVSETKE G VSG
Sbjct: 1   MGRNLSPVLRRELENLDKDADSRRSAMQALKSYVKDLDSKAIPLFLAQVSETKETGCVSG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYEVLARVHG  IVPQIDSIM TI KTLASSAGSFPLQQACS+VVPAIARYGIDP
Sbjct: 61  EYTISLYEVLARVHGVKIVPQIDSIMATIIKTLASSAGSFPLQQACSKVVPAIARYGIDP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           T PE+KKR IIHSLCKPLS++L GSQESLT+GAALCLKALVDSDNWRF SDEMVN+VCQN
Sbjct: 121 THPEEKKRQIIHSLCKPLSEALFGSQESLTSGAALCLKALVDSDNWRFTSDEMVNRVCQN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
            A ALE+KSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILN G  E NSQKRL A
Sbjct: 181 GAVALEDKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNTGVAEGNSQKRLSA 240

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLMK LDPRSI SE++LIIE ME CQSDQMAYV GA+ EALQTAK+I+ + G KF
Sbjct: 241 IQMINFLMKCLDPRSIISEIDLIIEEMEKCQSDQMAYVSGAAFEALQTAKKISTDKGLKF 300

Query: 301 EKGSGSVIGSNFG-RDHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQL 359
           +K   SV GSNFG RDH  RRNL +  N SP+S+SPESQTL+SF EYDS  +SPVS +Q+
Sbjct: 301 DKSPVSVTGSNFGRRDHRGRRNLSSPGNHSPTSVSPESQTLDSFIEYDSLADSPVSSTQI 360

Query: 360 SCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYS-VVQGSPIRSI--SYSSHHEIND 416
           S + EYD RS    VNRKLWS+ENG VDVSL+DGL+S +  GSP        S H+E N+
Sbjct: 361 SHNMEYDRRS----VNRKLWSYENGQVDVSLRDGLFSELANGSPGHDAFSGDSGHYEPNE 416

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQ---DV 473
           +GGD    F+GF  R+PR+   RS TPSPQRS SH+NVD+I IFTTPR+LI SLQ   DV
Sbjct: 417 NGGD----FSGFLPRTPRN-GLRSATPSPQRSRSHLNVDDINIFTTPRKLIHSLQEPNDV 471

Query: 474 NTDFSEKQSRRFRSPSSIKYEQSPTPR--RNGFSREVFYDVKRNGNLHNEDEQLQGVSES 531
           ++DFSE+QSRRFRSPS  KY+ SP  +  RNGF     Y+V+ N N +   EQLQG SES
Sbjct: 472 DSDFSERQSRRFRSPSR-KYDYSPNMKFNRNGFQHHEGYEVEENRNSYAGGEQLQGTSES 530

Query: 532 VSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFL 591
           VSSTDD P+  D+Q++ +V+SGNK +  + C+++   K  ++L  GLFF L+AIF+SL  
Sbjct: 531 VSSTDDVPVHTDVQLSPEVLSGNKDDAPRFCSRKDHRKNFYRLFGGLFFALLAIFSSLLW 590

Query: 592 IDGQENGHHLVPT 604
           ID Q+NG +LVPT
Sbjct: 591 IDSQDNGGYLVPT 603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144783|ref|XP_002325413.1| predicted protein [Populus trichocarpa] gi|222862288|gb|EEE99794.1| predicted protein [Populus trichocarpa]

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/614 (69%), Positives = 490/614 (79%), Gaps = 15/614 (2%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSPILRQELANLDKDADSRKSAMKALKSYV+ LDSKAIP FLAQVSETKE GS+SG
Sbjct: 1   MGRNLSPILRQELANLDKDADSRKSAMKALKSYVRGLDSKAIPQFLAQVSETKETGSLSG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYEVLARVHG NIV Q+DSIM TI KTLASSAGSFPLQQACS+VVPAIARYGI+P
Sbjct: 61  EYTISLYEVLARVHGVNIVTQVDSIMATIIKTLASSAGSFPLQQACSKVVPAIARYGIEP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTPE KKRHIIHSLCKPLS++LLGSQE LT+GAALCLKALVDSDNWRFASDEMVN+VCQN
Sbjct: 121 TTPEHKKRHIIHSLCKPLSEALLGSQECLTSGAALCLKALVDSDNWRFASDEMVNRVCQN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VA +LEEK TQTNSHM LVMALAKHNALIVEAYARLL+QSGLRIL AG  E NSQKRL A
Sbjct: 181 VAVSLEEKPTQTNSHMALVMALAKHNALIVEAYARLLVQSGLRILKAGVLEGNSQKRLSA 240

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLMK LDPRSIFSE++LIIE M   QSD MAYV GA+ EALQTAK+IAAE G KF
Sbjct: 241 IQMVNFLMKCLDPRSIFSEIDLIIEEMNESQSDPMAYVSGAAFEALQTAKKIAAEKGSKF 300

Query: 301 EKGSGSVIGSNFG-RDHNRRRNLLNG-DNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQ 358
           EK SGS+ GSNFG RDH  RRNL +   ++SP+S+SPESQTL+SF EY+SFIESP+S + 
Sbjct: 301 EKSSGSITGSNFGRRDHRGRRNLSSAYGDQSPASISPESQTLDSFMEYESFIESPISTTN 360

Query: 359 LSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSI--SYSSHHEIND 416
            S  +EYD  S    VNRKLWSFENGGVDVSLKDGL+S  QGSPI       S  HE+ +
Sbjct: 361 TS-SSEYDRGS----VNRKLWSFENGGVDVSLKDGLFSESQGSPIHDAFSDQSGLHELTE 415

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVN-- 474
           + G  T EF GF  RSPR+  +R TTPSPQRS SHINV+N+ IFTTPR+L+ +LQD N  
Sbjct: 416 NRGSCTGEFAGFLPRSPRNGLSRCTTPSPQRSRSHINVNNVSIFTTPRKLVHALQDPNDL 475

Query: 475 -TDFSEKQSRRFRSPSSIKYEQSPTPR--RNGFSREVFYDVKRNGNLHNEDEQLQGVSES 531
            +DFSEKQ+ RF SP S K++  PT R  +NGF +++  +V  NGN +   EQLQG SES
Sbjct: 476 DSDFSEKQNERFGSPCSCKFDYRPTLRLKQNGFQQDMGSEVNENGNSYAGGEQLQGPSES 535

Query: 532 VSSTDDGPISDDMQVTQQVVSGNKT-EIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLF 590
           V+ST++ P++ D QV+ +V+ G KT + +K CA+    KT+  LV G    L+AI  SL 
Sbjct: 536 VASTEEIPVNTDTQVSTEVILGKKTDDPKKNCAEREMRKTSSLLVVGFCIALLAILASLM 595

Query: 591 LIDGQENGHHLVPT 604
            I  Q++ HH+VPT
Sbjct: 596 FIYLQDDSHHMVPT 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441635|ref|XP_002276958.1| PREDICTED: uncharacterized protein LOC100262437 [Vitis vinifera]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/621 (65%), Positives = 485/621 (78%), Gaps = 23/621 (3%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSPI+R+ELANLDKDADSRKSAMKALKSYVKDLDS AIPLFLAQVSETKE GS  G
Sbjct: 1   MGRNLSPIVRRELANLDKDADSRKSAMKALKSYVKDLDSTAIPLFLAQVSETKEPGSSYG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYE+LARVHG NI+PQID+IMTTI KTL+  A SF L QACS+V+PAIARYGIDP
Sbjct: 61  EYTISLYELLARVHGPNIIPQIDNIMTTIIKTLSLRAASFALHQACSKVLPAIARYGIDP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTPEDKKRHIIHSLCKPLSD LLGS ESL++GAALCLKALVDSDNWRFASD+MVN+VCQN
Sbjct: 121 TTPEDKKRHIIHSLCKPLSDCLLGSHESLSSGAALCLKALVDSDNWRFASDDMVNEVCQN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VAGALE+  TQTN+HM LVMALAKHN+LIVEAYARLLIQSGLRILNAG  EANSQKRL A
Sbjct: 181 VAGALEDSPTQTNTHMSLVMALAKHNSLIVEAYARLLIQSGLRILNAGIDEANSQKRLSA 240

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLMK LDPRSIFSEL LII+ MENCQSDQMAYV+GA+ EALQTA+R+ +E G KF
Sbjct: 241 IQMVNFLMKCLDPRSIFSELGLIIKEMENCQSDQMAYVRGAAYEALQTARRVVSEKGSKF 300

Query: 301 EKGSGSVIGSNFGR-DHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQL 359
           +K  G   GSN  R DH +R+NLL+  ++SP S SPESQTL+SF EY+S IESP+S  Q+
Sbjct: 301 DKDMGLFAGSNVVRGDHIQRKNLLSNGDQSPFSGSPESQTLDSFVEYESLIESPISTRQV 360

Query: 360 SCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYS-VVQGSPIRSI--SYSSHHEIND 416
           S + +YD  S     NRKLW + NGGVDVSLKDGL+S + +G+ + +    +S H ++ +
Sbjct: 361 SRNLDYDRGS----ANRKLWRYGNGGVDVSLKDGLFSELSKGNGVSAAFSEHSRHEDLTN 416

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTD 476
             GDYTDEF GF QR+PR+R  RSTTPSPQR  S INVDN+ I+TTPR+L+ SLQD N  
Sbjct: 417 KRGDYTDEFAGFVQRTPRNRVLRSTTPSPQRLRSQINVDNVNIYTTPRKLVHSLQDSN-- 474

Query: 477 FSEKQSRRFRSPSSIKYEQSPTPR--RNGFSREVFYDV--KRNGNLHNEDEQLQGVSESV 532
           FSEKQ+RR RSPS  KYE SP+    ++GFS ++ Y+V    N +     +Q QG SESV
Sbjct: 475 FSEKQNRRLRSPSPSKYEWSPSVNYGQSGFSHDMNYEVGENGNLSSGGGGDQSQGDSESV 534

Query: 533 SSTDDGPISDDMQVTQQVVSGNKTEIQ---------KLCAKETPPKTAFKLVFGLFFILV 583
           SST+D P   ++QV+ +V+ G+  + Q          +  K+   K +FKLV+GL F+L 
Sbjct: 535 SSTEDVPTEANVQVSHEVIPGDTIDTQGVGMVGMVGMVGMKKAGEKISFKLVYGLIFLLF 594

Query: 584 AIFTSLFLIDGQENGHHLVPT 604
           A   SL  +D Q+ G++LVPT
Sbjct: 595 ATLVSLLWVDTQDGGYNLVPT 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768693|emb|CAN71660.1| hypothetical protein VITISV_016185 [Vitis vinifera]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/621 (65%), Positives = 483/621 (77%), Gaps = 23/621 (3%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSPI+R+ELANLDKDADSRKSAMKALKSYVKDLDS AIPLFLAQVSETKE GS  G
Sbjct: 1   MGRNLSPIVRRELANLDKDADSRKSAMKALKSYVKDLDSTAIPLFLAQVSETKEPGSSYG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYE+LARVHG NI+PQID+IM TI KT++  A SF L QACS+V+PAIARYGIDP
Sbjct: 61  EYTISLYELLARVHGPNIIPQIDNIMXTIIKTMSLRAASFALHQACSKVLPAIARYGIDP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTPEDKKRHIIHSLCKPLSD LLGS ESL++GAALCLKALVDSDNWRFASD+MVN+VCQN
Sbjct: 121 TTPEDKKRHIIHSLCKPLSDCLLGSHESLSSGAALCLKALVDSDNWRFASDDMVNEVCQN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VAGALE+  TQTN+HM LVMALAKHN+LIVEAYARLLIQSGLRILNAG  EANSQKRL A
Sbjct: 181 VAGALEDSPTQTNTHMSLVMALAKHNSLIVEAYARLLIQSGLRILNAGIDEANSQKRLSA 240

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLMK LDPRSIFSEL LII+ MENCQSDQMAYV+GA+ EALQTA+R+ +E G KF
Sbjct: 241 IQMVNFLMKCLDPRSIFSELGLIIKEMENCQSDQMAYVRGAAYEALQTARRVVSEKGSKF 300

Query: 301 EKGSGSVIGSNFGR-DHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQL 359
           +K  G   GSN  R DH +R+NLL+  ++SP S SPESQTL+SF EY+S IESP+S  Q+
Sbjct: 301 DKDMGLFAGSNVVRGDHIQRKNLLSNGDQSPFSGSPESQTLDSFVEYESLIESPISTRQV 360

Query: 360 SCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYS-VVQGSPIRSI--SYSSHHEIND 416
           S + +YD  S     NRKLW + NGGVDVSLKDGL+S + +G+ + +    +S H ++ +
Sbjct: 361 SRNLDYDRGS----ANRKLWRYGNGGVDVSLKDGLFSELSKGNGVSAAFSEHSRHEDLTN 416

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTD 476
             GDYTDEF GF QR+PR+R  RSTTPSPQR  S INVDN+ I+TTPR+L+ SLQD N  
Sbjct: 417 KRGDYTDEFAGFVQRTPRNRVLRSTTPSPQRLRSQINVDNVNIYTTPRKLVHSLQDSN-- 474

Query: 477 FSEKQSRRFRSPSSIKYEQSPTPR--RNGFSREVFYDV--KRNGNLHNEDEQLQGVSESV 532
           FSEKQ+RR RSPS  KYE SP+    ++GFS ++ Y+V    N +     +Q QG SESV
Sbjct: 475 FSEKQNRRLRSPSPSKYEWSPSVNYGQSGFSHDMNYEVGENGNLSSGGGGDQSQGDSESV 534

Query: 533 SSTDDGPISDDMQVTQQVVSGNKTEIQ---------KLCAKETPPKTAFKLVFGLFFILV 583
           SST+D P   ++QV+ +V+ G+  + Q          +  K+     +FKLV+GL F+L 
Sbjct: 535 SSTEDVPTEANVQVSHEVIPGDTIDTQGVGMVGMVGMVGMKKAGENISFKLVYGLIFLLF 594

Query: 584 AIFTSLFLIDGQENGHHLVPT 604
           A   SL  +D Q+ G++LVPT
Sbjct: 595 ATLVSLLWVDTQDGGYNLVPT 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739751|emb|CBI29933.3| unnamed protein product [Vitis vinifera]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/621 (63%), Positives = 468/621 (75%), Gaps = 42/621 (6%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSPI+R+ELANLDKDADSRKSAMKALKSYVKDLDS AIPLFLAQVSETKE GS  G
Sbjct: 128 MGRNLSPIVRRELANLDKDADSRKSAMKALKSYVKDLDSTAIPLFLAQVSETKEPGSSYG 187

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYE+LAR                   TL+  A SF L QACS+V+PAIARYGIDP
Sbjct: 188 EYTISLYELLAR-------------------TLSLRAASFALHQACSKVLPAIARYGIDP 228

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTPEDKKRHIIHSLCKPLSD LLGS ESL++GAALCLKALVDSDNWRFASD+MVN+VCQN
Sbjct: 229 TTPEDKKRHIIHSLCKPLSDCLLGSHESLSSGAALCLKALVDSDNWRFASDDMVNEVCQN 288

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VAGALE+  TQTN+HM LVMALAKHN+LIVEAYARLLIQSGLRILNAG  EANSQKRL A
Sbjct: 289 VAGALEDSPTQTNTHMSLVMALAKHNSLIVEAYARLLIQSGLRILNAGIDEANSQKRLSA 348

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLMK LDPRSIFSEL LII+ MENCQSDQMAYV+GA+ EALQTA+R+ +E G KF
Sbjct: 349 IQMVNFLMKCLDPRSIFSELGLIIKEMENCQSDQMAYVRGAAYEALQTARRVVSEKGSKF 408

Query: 301 EKGSGSVIGSNFGR-DHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQL 359
           +K  G   GSN  R DH +R+NLL+  ++SP S SPESQTL+SF EY+S IESP+S  Q+
Sbjct: 409 DKDMGLFAGSNVVRGDHIQRKNLLSNGDQSPFSGSPESQTLDSFVEYESLIESPISTRQV 468

Query: 360 SCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYS-VVQGSPIRSI--SYSSHHEIND 416
           S + +YD  S     NRKLW + NGGVDVSLKDGL+S + +G+ + +    +S H ++ +
Sbjct: 469 SRNLDYDRGS----ANRKLWRYGNGGVDVSLKDGLFSELSKGNGVSAAFSEHSRHEDLTN 524

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTD 476
             GDYTDEF GF QR+PR+R  RSTTPSPQR  S INVDN+ I+TTPR+L+ SLQD N  
Sbjct: 525 KRGDYTDEFAGFVQRTPRNRVLRSTTPSPQRLRSQINVDNVNIYTTPRKLVHSLQDSN-- 582

Query: 477 FSEKQSRRFRSPSSIKYEQSPTPR--RNGFSREVFYDV--KRNGNLHNEDEQLQGVSESV 532
           FSEKQ+RR RSPS  KYE SP+    ++GFS ++ Y+V    N +     +Q QG SESV
Sbjct: 583 FSEKQNRRLRSPSPSKYEWSPSVNYGQSGFSHDMNYEVGENGNLSSGGGGDQSQGDSESV 642

Query: 533 SSTDDGPISDDMQVTQQVVSGNKTEIQ---------KLCAKETPPKTAFKLVFGLFFILV 583
           SST+D P   ++QV+ +V+ G+  + Q          +  K+   K +FKLV+GL F+L 
Sbjct: 643 SSTEDVPTEANVQVSHEVIPGDTIDTQGVGMVGMVGMVGMKKAGEKISFKLVYGLIFLLF 702

Query: 584 AIFTSLFLIDGQENGHHLVPT 604
           A   SL  +D Q+ G++LVPT
Sbjct: 703 ATLVSLLWVDTQDGGYNLVPT 723

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459646|ref|XP_004147557.1| PREDICTED: uncharacterized protein LOC101207432 [Cucumis sativus] gi|449510449|ref|XP_004163667.1| PREDICTED: uncharacterized protein LOC101230364 [Cucumis sativus]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/620 (63%), Positives = 461/620 (74%), Gaps = 23/620 (3%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           M + LSP+LR+E ANLDKDADSR+SAMKALK+YVK+LDSKAIP+FLAQVSE KE G+++G
Sbjct: 12  MSKNLSPMLRREFANLDKDADSRRSAMKALKTYVKELDSKAIPVFLAQVSENKETGALNG 71

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           E TISLYEVLARVHG NIVPQID IMT+I KTLASSAGSFPLQQACS+VVPAIARYGIDP
Sbjct: 72  ECTISLYEVLARVHGVNIVPQIDRIMTSIIKTLASSAGSFPLQQACSKVVPAIARYGIDP 131

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTP+DKK+H+I+SLC PLS+SLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN
Sbjct: 132 TTPDDKKKHVIYSLCNPLSESLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 191

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VAGALEEKSTQTNSHMGLVM LAK N  IVE YARLL+Q+GLRIL  G  E NSQKRL A
Sbjct: 192 VAGALEEKSTQTNSHMGLVMTLAKRNPRIVEPYARLLLQAGLRILKCGVVEKNSQKRLSA 251

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+NFLM+ LDP SIFSEL+ IIE MENCQSDQM YVKGA+ E LQTAK+I A+ G K 
Sbjct: 252 IQMINFLMRCLDPWSIFSELQSIIEEMENCQSDQMPYVKGAAFETLQTAKKILADKGSKM 311

Query: 301 EKGSGSVIGSNFGRDHNRRRNLLNGDNRSPSSMSPESQTLNSFAEYDSFIESPVSMSQLS 360
           +K   SV GSNF  DH RR    NG +R+PSS SPESQTL+SF +Y S + SP S  Q S
Sbjct: 312 DKSPSSVTGSNF-LDHRRRSPWRNGGSRTPSSESPESQTLDSFFDYGSLVGSPFSSRQAS 370

Query: 361 CDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGL---YSVVQGSPIRSI--SYSSHHEIN 415
            ++ +D RS    VNRKLWS+ENGGVD+SLKDGL     V +G+ +      YS  H+  
Sbjct: 371 RNSGFDRRS----VNRKLWSYENGGVDISLKDGLSLFSEVTRGTDVSDTMSMYSGSHKFG 426

Query: 416 DSGGDYTDEFTGFFQRS-PRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVN 474
            +G +Y D+F+GFFQ S PR R +RSTT SP RS S+INV+++ IF TPR+L+ SLQD+N
Sbjct: 427 HNGEEYADDFSGFFQMSPPRRRLSRSTTTSPLRSRSYINVEDM-IFKTPRKLVHSLQDLN 485

Query: 475 ---TDFSEKQSR-RFRSPSSIKYEQSPTPR----RNGFSREVFYDVKRNGNLHNED-EQL 525
              +D++   SR R RS SS   E SP PR    +NGF+ E     +    L N + EQ 
Sbjct: 486 EGKSDYASGSSRCRHRSLSSGNLEWSP-PRAFLNQNGFADEPKLSKEDEDGLGNGNGEQS 544

Query: 526 QGVSESVSSTDDGPISDDMQ-VTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVA 584
           QG  ES+SS D  P   D+Q +   V   +K + Q    +    KTA KLV G  F+L  
Sbjct: 545 QGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFT 604

Query: 585 IFTSLFLIDGQENGHHLVPT 604
           IFTSL  ID  + G +LVPT
Sbjct: 605 IFTSLLWIDDHDQGSYLVPT 624

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559542|ref|XP_003548058.1| PREDICTED: uncharacterized protein LOC100820627 [Glycine max]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/618 (62%), Positives = 450/618 (72%), Gaps = 23/618 (3%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSP+L++E+ NLDKD DSRKSAM+ALKSYVKDLD K IP+FLAQVSETKE GS+SG
Sbjct: 1   MGRGLSPMLQREIQNLDKDGDSRKSAMRALKSYVKDLDMKTIPIFLAQVSETKETGSLSG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           E+TISLYEVLARVHG  IVP IDSIM +I +TLASSAGSFPLQQACS+VVPAIARYGIDP
Sbjct: 61  EFTISLYEVLARVHGVKIVPMIDSIMQSIVQTLASSAGSFPLQQACSKVVPAIARYGIDP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TTPE+KKR IIHSLCKPLSDSLL SQESLT GAALCLKALVDSDNWRFASDEMVN+VC+N
Sbjct: 121 TTPEEKKRQIIHSLCKPLSDSLLSSQESLTCGAALCLKALVDSDNWRFASDEMVNRVCRN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAG--PGEANSQKRL 238
           VA ALE KS QTNSHMGLVM LAK NALIVEAYARL IQS LRILNAG  P E NSQKR 
Sbjct: 181 VAVALEGKSAQTNSHMGLVMTLAKRNALIVEAYARLFIQSALRILNAGSEPLEGNSQKRF 240

Query: 239 LAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGP 298
           +AIQM+NFLMK LDPRS+FSE+E IIE ME CQSD+MAYVKGA+ EALQTAK I  +   
Sbjct: 241 VAIQMVNFLMKCLDPRSLFSEVEQIIEVMELCQSDKMAYVKGAAFEALQTAKIIVTDKKS 300

Query: 299 KFEKGSGSVIGSNFGRDHNRRRNLLNGD-NRSPSSMSPESQTLNSFAEYDSFIESPVSMS 357
           +  K   S+ GSNF R         +GD +RS SS+SPESQTL+ F  Y S IESP+S S
Sbjct: 301 RGVKSPASMTGSNFSRKDYMEGESFSGDGDRSLSSISPESQTLDFFNGYASPIESPISTS 360

Query: 358 QLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVV--QGSPIRSISYSSHHEIN 415
           + S +         R+VNRKLWS ENGGVDVSLKDGL+S    + + +    Y+  HE +
Sbjct: 361 RPSHNF------YERSVNRKLWSHENGGVDVSLKDGLFSKSGHRNASLDHSHYTMDHEFS 414

Query: 416 DSGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQ-DVN 474
           + GGD T EF GF  +SP   A+RS + SP RS +     NI IF TPR+LI SLQ D+N
Sbjct: 415 NGGGDLTGEFAGFMHKSPWHGASRSASTSPLRSCTQ---GNIKIFMTPRKLIHSLQEDLN 471

Query: 475 ---TDFSEKQSRRFRSPSSIKYEQSPTPR----RNGFSREVFYDVKRNGNLH-NEDEQLQ 526
              +D SEK +RR +S SS   + SP       +NG +  V YD K +G+L+ N D Q Q
Sbjct: 472 DEISDCSEKPNRRIKSLSSGNIKWSPASYSKYDQNGIADHVNYDSKESGSLYGNGDIQFQ 531

Query: 527 GVSESVSSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIF 586
           G  ESVSSTDD P + D+Q   +V   ++   + +  ++   KT  KLV G+ F L+AI 
Sbjct: 532 GGPESVSSTDDIPGNTDLQRPSEVGPESRNGTETVLMEKPFQKTTHKLVCGISFALLAIA 591

Query: 587 TSLFLIDGQENGHHLVPT 604
           T L  I+ Q+ GH LVPT
Sbjct: 592 TPLLWINSQDEGHFLVPT 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560382|ref|XP_003548471.1| PREDICTED: uncharacterized protein LOC100782340 [Glycine max]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 365/621 (58%), Positives = 454/621 (73%), Gaps = 48/621 (7%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MGR LSP++RQELANL+KD DSRKSAMKALKSYVKDLD +AIP FLA+VSE+KEN   SG
Sbjct: 1   MGRSLSPLVRQELANLEKDEDSRKSAMKALKSYVKDLDLEAIPFFLAKVSESKEN--CSG 58

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           E+TIS++EVLARVHG  IVP ID+IM TI KTLASSAGSFPLQQACS+VVPA+ARYGIDP
Sbjct: 59  EFTISIFEVLARVHGVKIVPLIDNIMRTIVKTLASSAGSFPLQQACSKVVPAVARYGIDP 118

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           +TPEDK+RHII SLC PLS+SL  SQESLT+GAALCLKALVDSDNWRFASDE+VN+VCQN
Sbjct: 119 STPEDKRRHIIWSLCTPLSNSLSSSQESLTSGAALCLKALVDSDNWRFASDELVNRVCQN 178

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           VA AL+ KS QTNSH+GLVM+LA+ NALI+EAYARLLIQSG+RILNAG  E NSQKRL +
Sbjct: 179 VAAALDGKSGQTNSHLGLVMSLARRNALIIEAYARLLIQSGIRILNAGLVEGNSQKRLSS 238

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           IQM+N+LM+SLD RSIFSE+ELIIE M+ CQSD+MA+V+GA+LEALQTAKRIA++  P++
Sbjct: 239 IQMINYLMRSLDSRSIFSEIELIIEEMDKCQSDKMAFVQGAALEALQTAKRIASDKKPRY 298

Query: 301 EKGSGSVIGSNFGR---DHNRRRNLLNGDNR-SPSSMSPESQTLNSFAEYDSFIESPVSM 356
            K   SV GSNF R   D+    N  +GD   +PSS++PES+T + F  Y+ +++SP+S 
Sbjct: 299 AKSPASVTGSNFSRREEDYMEGENTSSGDGEHTPSSLTPESRTFDFFPGYE-YVDSPIS- 356

Query: 357 SQLSCDTEYDCRSVNRNVNRKLWSFENGGVDVSLKDGLYSVVQGSPIRSISYSSHHEIND 416
           S              R+V RKLWS ENGGVDVSLKDGL+S + G     + +S   E +D
Sbjct: 357 SNFG----------RRSVTRKLWSNENGGVDVSLKDGLFSQI-GKESALLEHSLIPEFSD 405

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVDNIGIFTTPRRLIRSLQDVNTD 476
             GDYT+EF GF  R+     ++STT SP RS +   VD+I IF TPR+LI SLQD ++D
Sbjct: 406 GEGDYTEEFAGFMGRNTSHGVSKSTTTSPLRSRTQATVDSIKIFETPRKLIHSLQD-SSD 464

Query: 477 FS-----EKQSRRFRSPSS-IKYEQSPTPR--RNGFSREVFYDVKRNGNLHNE---DEQL 525
            S     ++Q+ R+RS SS    E SP+ +  +NGFS     D+ +  +   E   + + 
Sbjct: 465 LSLGCSKKEQNGRYRSLSSDDNMEWSPSCKYNQNGFSD----DMNKCDSEVIEGCAEVEF 520

Query: 526 QGVSESVSSTDDGPISDDM--QVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILV 583
           QG SESVSST+D  I  D+  Q+  +VV  N+             KT +KLV GL  +L+
Sbjct: 521 QGGSESVSSTNDNNILVDVEKQMHTKVVPENRN-----------AKTKYKLVCGLSCVLL 569

Query: 584 AIFTSLFLIDGQENGHHLVPT 604
           A+ T L  I+ Q+ GH+LVPT
Sbjct: 570 AVATPLLWINNQDEGHYLVPT 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330247|ref|NP_683432.1| ARM repeat-containing protein [Arabidopsis thaliana] gi|79319936|ref|NP_001031189.1| ARM repeat-containing protein [Arabidopsis thaliana] gi|52354179|gb|AAU44410.1| hypothetical protein AT1G54385 [Arabidopsis thaliana] gi|52354181|gb|AAU44411.1| hypothetical protein AT1G54385 [Arabidopsis thaliana] gi|332194970|gb|AEE33091.1| ARM repeat-containing protein [Arabidopsis thaliana] gi|332194971|gb|AEE33092.1| ARM repeat-containing protein [Arabidopsis thaliana]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 360/614 (58%), Positives = 427/614 (69%), Gaps = 64/614 (10%)

Query: 1   MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
           MG  L+PILRQELANLDKD +SRKSAMKALKSYVKDLDSKAIP FLAQV ETKE  S+SG
Sbjct: 1   MGLNLNPILRQELANLDKDTESRKSAMKALKSYVKDLDSKAIPGFLAQVFETKETNSLSG 60

Query: 61  EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
           EYTISLYE+LARVHG NIVPQID+IM+TI KTLASSAGSFPLQQACS+V+PAIARYGIDP
Sbjct: 61  EYTISLYEILARVHGPNIVPQIDTIMSTIVKTLASSAGSFPLQQACSKVIPAIARYGIDP 120

Query: 121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
           TT EDKKR IIHSLCKPL+DSLL SQESLT+GAALCLKALVDSDNWRFASDEMVN+VCQN
Sbjct: 121 TTTEDKKRVIIHSLCKPLTDSLLASQESLTSGAALCLKALVDSDNWRFASDEMVNRVCQN 180

Query: 181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
           V  AL+  S QT+  MGLVM+LAKHN LIVEAYARLLI +GLRIL  G  E NSQKRL A
Sbjct: 181 VVVALDSNSNQTHLQMGLVMSLAKHNPLIVEAYARLLIHTGLRILGFGVSEGNSQKRLSA 240

Query: 241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
           +QMLNFLMK LDPRSI+SE+ELII+ ME CQSDQMAYV+GA+ EA+ T+KRIAAE   K 
Sbjct: 241 VQMLNFLMKCLDPRSIYSEVELIIKEMERCQSDQMAYVRGAAYEAMMTSKRIAAELESKM 300

Query: 301 EKGSGSVIGSNFGRDHNRRRNLLNGDNRSPS-SMSPESQTLNSFAEYDSFIESPVSMSQL 359
           EKG  SV GSNF R         N  +  P  S+SPESQTL SF+ YDS +ES   +S  
Sbjct: 301 EKGCRSVTGSNFSRR--------NCSSIVPDYSLSPESQTLGSFSGYDSPVESS-PISHT 351

Query: 360 SCDTEYDCRSVNRNVNRKLWSF-ENGG-VDVSLKDGLYS-VVQGSPIRSISYSSHHEIND 416
           SC++E+D     R+VNRKLW   ENGG VD+SLKDGL+S V +GS   S S    ++  +
Sbjct: 352 SCNSEFD----RRSVNRKLWRRDENGGVVDISLKDGLFSRVTKGSTTVSDSPLVPYDTCE 407

Query: 417 SGGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHS-HINVDNIGIFTTPRRLIRSLQ---D 472
           +G    DEF GF   S      R+TTPSPQR  S  IN ++  IF+TPR+LI SLQ   D
Sbjct: 408 NG----DEFEGFLMES-----LRNTTPSPQRQRSRRINAEDFNIFSTPRKLISSLQYPDD 458

Query: 473 VNTDFSEKQSRRFRSPSSIKYEQSPTPRRNGFSREVFYDVKRNGNLHNEDEQLQGVSESV 532
           V+ D S+ QS   R                   RE     ++N  L    +Q   + E++
Sbjct: 459 VDLDHSDIQSPILRG-----------------EREKTIGSRKNPKLR---KQFPTMVETM 498

Query: 533 SSTDDGPISDDMQVTQQVVSGNKTEIQKLCAKETPPKTAFKLVFGLFFILVAIFTSLFLI 592
           SST    +S+D   TQ +    K +               KLV  + F++VA+F ++ L+
Sbjct: 499 SSTIT--VSEDTAQTQMITGKKKKKKMSYA----------KLVIAISFVVVALFATVILM 546

Query: 593 DGQEN--GHHLVPT 604
             Q++  G++ VPT
Sbjct: 547 VNQDDDVGYYTVPT 560

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
TAIR|locus:504956282	560	AT1G54385 [Arabidopsis thalian	0.796	0.858	0.632	2.2e-144
TAIR|locus:2095963	554	AT3G03970 [Arabidopsis thalian	0.496	0.541	0.627	1.6e-94
TAIR|locus:2136467	864	TOR1 "TORTIFOLIA 1" [Arabidops	0.451	0.315	0.224	0.00047
TAIR|locus:2060161	820	AT2G07170 [Arabidopsis thalian	0.451	0.332	0.210	0.00056

TAIR|locus:504956282 AT1G54385 [Arabidopsis thaliana (taxid:3702)]

 Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
 Identities = 322/509 (63%), Positives = 372/509 (73%)

Query:     1 MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
             MG  L+PILRQELANLDKD +SRKSAMKALKSYVKDLDSKAIP FLAQV ETKE  S+SG
Sbjct:     1 MGLNLNPILRQELANLDKDTESRKSAMKALKSYVKDLDSKAIPGFLAQVFETKETNSLSG 60

Query:    61 EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
             EYTISLYE+LARVHG NIVPQID+IM+TI KTLASSAGSFPLQQACS+V+PAIARYGIDP
Sbjct:    61 EYTISLYEILARVHGPNIVPQIDTIMSTIVKTLASSAGSFPLQQACSKVIPAIARYGIDP 120

Query:   121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN 180
             TT EDKKR IIHSLCKPL+DSLL SQESLT+GAALCLKALVDSDNWRFASDEMVN+VCQN
Sbjct:   121 TTTEDKKRVIIHSLCKPLTDSLLASQESLTSGAALCLKALVDSDNWRFASDEMVNRVCQN 180

Query:   181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA 240
             V  AL+  S QT+  MGLVM+LAKHN LIVEAYARLLI +GLRIL  G  E NSQKRL A
Sbjct:   181 VVVALDSNSNQTHLQMGLVMSLAKHNPLIVEAYARLLIHTGLRILGFGVSEGNSQKRLSA 240

Query:   241 IQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKF 300
             +QMLNFLMK LDPRSI+SE+ELII+ ME CQSDQMAYV+GA+ EA+ T+KRIAAE   K 
Sbjct:   241 VQMLNFLMKCLDPRSIYSEVELIIKEMERCQSDQMAYVRGAAYEAMMTSKRIAAELESKM 300

Query:   301 EKGSGSVIGSNFXXXXXXXXXXXXXXXXSPSSMSPESQTLNSFAEYDSFIESPVSMSQLS 360
             EKG  SV GSNF                   S+SPESQTL SF+ YDS +ES   +S  S
Sbjct:   301 EKGCRSVTGSNFSRRNCSSIVPDY-------SLSPESQTLGSFSGYDSPVESS-PISHTS 352

Query:   361 CDTEYDCRSVNRNVNRKLWSF-ENGGV-DVSLKDGLYS-VVQGSPIRSISYSSHHEINDS 417
             C++E+D RSVNR    KLW   ENGGV D+SLKDGL+S V +GS   S S    ++  ++
Sbjct:   353 CNSEFDRRSVNR----KLWRRDENGGVVDISLKDGLFSRVTKGSTTVSDSPLVPYDTCEN 408

Query:   418 GGDYTDEFTGFFQRSPRDRATRSTTPSPQRSHSHINVD-NIGIFTTPRRL--IRSLQDVN 474
             G    DEF GF   S R+    + +P  QRS      D NI   T  + +  ++   DV+
Sbjct:   409 G----DEFEGFLMESLRNT---TPSPQRQRSRRINAEDFNI-FSTPRKLISSLQYPDDVD 460

Query:   475 TDFSEKQSRRFRSP--SSIKYEQSPTPRR 501
              D S+ QS   R     +I   ++P  R+
Sbjct:   461 LDHSDIQSPILRGEREKTIGSRKNPKLRK 489

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2095963 AT3G03970 [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
 Identities = 190/303 (62%), Positives = 229/303 (75%)

Query:     1 MGRCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSG 60
             MGR L    RQELANLDKD DS K+AM  L+S VKDLD+K + +F+AQ+S+ KE G  SG
Sbjct:     1 MGRNLGSAFRQELANLDKDPDSHKTAMSNLRSIVKDLDAKVVHVFVAQLSDVKEIGLESG 60

Query:    61 EYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP 120
              YT+SL+E LAR HG  I P ID IM  I +TL+SS GS  +QQACSR V A+ARYGIDP
Sbjct:    61 GYTVSLFEDLARAHGVKIAPHIDIIMPAIIRTLSSSEGSLRVQQACSRAVAAMARYGIDP 120

Query:   121 TTPEDKKRHIIHSLCKPLSDSLLGSQ--ESLTAGAALCLKALVDSDNWRFASDEMVNKVC 178
             TTPEDKK ++IHSLCKPLSDSL+ SQ  + L  G+ALCLK+LVD DNWR AS EMVN VC
Sbjct:   121 TTPEDKKTNVIHSLCKPLSDSLIDSQHQQHLALGSALCLKSLVDCDNWRSASSEMVNNVC 180

Query:   179 QNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRL 238
             Q++A ALE  S++  SHM LVMAL+KHN   VEAYARL ++SGLRIL+ G  E +SQKRL
Sbjct:   181 QSLAVALEATSSEAKSHMALVMALSKHNPFTVEAYARLFVKSGLRILDLGVVEGDSQKRL 240

Query:   239 LAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGP 298
             LAIQMLNFLMK+L+P+SI SELELI + ME  Q DQ  YVK A+ E ++ A+R+  E  P
Sbjct:   241 LAIQMLNFLMKNLNPKSISSELELIYQEMEKYQKDQH-YVKMAAHETMRQAERLICEADP 299

Query:   299 KFE 301
              F+
Sbjct:   300 MFD 302

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2136467 TOR1 "TORTIFOLIA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00047, P = 0.00047
 Identities = 67/299 (22%), Positives = 138/299 (46%)

Query:     9 LRQE-LANLDK--DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENG--SVSGEYT 63
             L+Q+ L ++ K  D D+ + A++ L+  ++ L  + +P+FL  + ++  +   +V  E  
Sbjct:    42 LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKE-C 100

Query:    64 ISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIAR-Y--GIDP 120
             + L   +  +H  +    +  I+  I K L  S     ++ AC   + A++  Y  G + 
Sbjct:   101 LHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSG--VRDACRDTIGALSGIYLKGKEE 158

Query:   121 TTPEDKKRHIIHSLCKPLSDSLLGSQESLT-AGAALCLKALVDSDNWRFASDEMVN--KV 177
              T        +    KPL +++ G Q  +  +GA++C+  +V+S     AS  + +  K+
Sbjct:   159 GTNTGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESA----ASPPVTSFQKL 213

Query:   178 CQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQK 236
             C  +   L   S     S + +V +L++  A+  ++     ++S L  ++   G  +   
Sbjct:   214 CPRICKLLSNSSFLAKASLLPVVSSLSQVGAIAPQS-----LESLLESIHDCLGSTDWVT 268

Query:   237 RLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE 295
             R  A + L  L  S     I  + +  I  +E C+ D++  V+ +  EALQ  K+I+ +
Sbjct:   269 RKAAAETLTALA-SHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGK 326

GO:0009507 "chloroplast" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010031 "circumnutation" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2060161 AT2G07170 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00056, P = 0.00056
 Identities = 62/295 (21%), Positives = 127/295 (43%)

Query:    19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGAN 77
             D D+ +  +  L+  V+ L    +  FL+ + +T  E  S   +  I L   LAR H   
Sbjct:    40 DRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKECIRLMGTLARFHEGL 99

Query:    78 IVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP 137
             + P +  ++++I K L        ++ AC   +  +A      +  ED+   +  SL KP
Sbjct:   100 VGPYLGKMVSSIVKRLKDPDSV--VRDACIETMGVLAS---KMSCYEDQNFGVFVSLVKP 154

Query:   138 LSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMG 197
             L +++    + + +GAALCL  ++DS      S E    + Q +   +       NSH  
Sbjct:   155 LFEAIGDQNKYVQSGAALCLARVIDS------SPEAPVAIIQRML--MRTVKLLNNSHFI 206

Query:   198 LVMALAKHNALIV---EAYARLLIQSGLRIL-NAGPGEANSQKRLLAIQMLNFLMKSLDP 253
                A+ + N  I+    A ++ ++ S +    +A   +  + ++  ++ ++         
Sbjct:   207 AKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATG--- 263

Query:   254 RSIFSELEL-IIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFEKGSGSV 307
                   L+   I  +E+C+ D++  V+ + + AL+  K +   + P+  +   SV
Sbjct:   264 EKFLGPLKASCICSLESCRFDKVKPVRDSVILALKYWKGVPGSDSPEPSETESSV 318


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      604       588   0.00083  120 3  11 23  0.43    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  294 KB (2154 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  56.29u 0.11s 56.40t   Elapsed:  00:00:04
  Total cpu time:  56.29u 0.11s 56.40t   Elapsed:  00:00:04
  Start:  Tue May 21 04:21:31 2013   End:  Tue May 21 04:21:35 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0000910 "cytokinesis" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007017 "microtubule-based process" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025483001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (615 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	604
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.39
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.8
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.68
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.67
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.51
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.35
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.22
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.22
PRK09687	280	putative lyase; Provisional	96.94
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.55
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.53
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.49
PRK09687	280	putative lyase; Provisional	96.49
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.47
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.0
PF05004	309	IFRD: Interferon-related developmental regulator (	95.97
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.93
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.91
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.77
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.59
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.54
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.28
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.22
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.9
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.81
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	94.79
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	94.62
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	94.5
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.29
PTZ00429	746	beta-adaptin; Provisional	94.05
PF05536	543	Neurochondrin: Neurochondrin	93.86
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.41
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	92.25
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.23
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.07
KOG2032	533	consensus Uncharacterized conserved protein [Funct	91.83
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	91.37
PTZ00429	746	beta-adaptin; Provisional	91.27
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.58
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	88.92
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	88.07
COG1413	335	FOG: HEAT repeat [Energy production and conversion	87.63
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	87.58
KOG2933	334	consensus Uncharacterized conserved protein [Funct	87.31
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	87.23
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	87.09
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	86.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	85.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	84.66
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	83.67
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	83.37
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	81.76
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	81.28
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	81.1
KOG2956	516	consensus CLIP-associating protein [General functi	80.09

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=1.8e-05  Score=92.94  Aligned_cols=267  Identities=13%  Similarity=0.121  Sum_probs=199.1

Q ss_pred             hHHHHHHHHHHHHhhcCCCC-hhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCC
Q 007426           22 SRKSAMKALKSYVKDLDSKA-IPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGS   99 (604)
Q Consensus        22 T~~iA~~eLesiak~Ld~dt-lP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS   99 (604)
                      .+.+|...|+..+-.|.++. +|+++..+..- ..++-.-|+-++--++.++.=-++.+.++|++||..|+.-|.|+.  
T Consensus       325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph--  402 (1075)
T KOG2171|consen  325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH--  402 (1075)
T ss_pred             cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC--
Confidence            78999999999999999766 78888777654 233233477778888888777778899999999999999999997  


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccc--hhhHHHHHHHHHHhccCCCCCCCHHHHH--
Q 007426          100 FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE--SLTAGAALCLKALVDSDNWRFASDEMVN--  175 (604)
Q Consensus       100 ~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe--~vQsGAALCLAAlVEs~nwr~Ap~elv~--  175 (604)
                      ..||.||-+++|.|+--+- |.     -..-.+..+-|+.-.++...+  -||+-||.||-..-|.     .+.+.+.  
T Consensus       403 prVr~AA~naigQ~stdl~-p~-----iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-----~~~~~l~pY  471 (1075)
T KOG2171|consen  403 PRVRYAALNAIGQMSTDLQ-PE-----IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-----CDKSILEPY  471 (1075)
T ss_pred             HHHHHHHHHHHHhhhhhhc-HH-----HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-----CcHHHHHHH
Confidence            5699999999999995432 11     122245666666666665554  4799999888777774     3555444  


Q ss_pred             --HHHHHHHHhhcCCccchh--hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426          176 --KVCQNVAGALEEKSTQTN--SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL  251 (604)
Q Consensus       176 --rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~  251 (604)
                        .+..+..+.|..++.+-.  .-+..++++|..-..-+.+|-..+++....||..+...+.-..|-=-.|-+..|+..+
T Consensus       472 Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV  551 (1075)
T KOG2171|consen  472 LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV  551 (1075)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh
Confidence              455556677777776665  5788888888888888899999999999999997654556666766689999999999


Q ss_pred             CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhcCCCccc
Q 007426          252 DPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFE  301 (604)
Q Consensus       252 d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~~g~~~~  301 (604)
                      +++-.......+|+.+=.-+.+-+-.=+-.-.-++..|-.++.--|..|.
T Consensus       552 Gke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~  601 (1075)
T KOG2171|consen  552 GKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFA  601 (1075)
T ss_pred             hhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhH
Confidence            87777767777887765554554444444455678889988877654443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.80  E-value=0.00067  Score=79.04  Aligned_cols=221  Identities=16%  Similarity=0.123  Sum_probs=110.3

Q ss_pred             cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426           17 DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS   96 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs   96 (604)
                      +.|++.|+.|+..|-.+-   ++..+|..+..+.|.+   ..||..++.-|..+.....     ..    ..++..|.++
T Consensus       632 D~d~~VR~~Av~~L~~~~---~~~~~~~L~~aL~D~d---~~VR~~Aa~aL~~l~~~~~-----~~----~~L~~~L~~~  696 (897)
T PRK13800        632 DPDPGVRRTAVAVLTETT---PPGFGPALVAALGDGA---AAVRRAAAEGLRELVEVLP-----PA----PALRDHLGSP  696 (897)
T ss_pred             CCCHHHHHHHHHHHhhhc---chhHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhccC-----ch----HHHHHHhcCC
Confidence            557788888888887764   4556777776664333   3478888777766643221     11    2344445554


Q ss_pred             CCChhhHHHHHHHHHHHH--------hhcCCCCCccccchhhHHhhh-----chhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           97 AGSFPLQQACSRVVPAIA--------RYGIDPTTPEDKKRHIIHSLC-----KPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        97 dSS~~vR~AC~kvv~ALA--------ry~idp~~~~~~~~~ii~sl~-----KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      +  ..||.+.+++.+.+.        ..+.|+..  .--...+..|.     .+|..+|..++..|...+|--|+.+=+.
T Consensus       697 d--~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~--~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~  772 (897)
T PRK13800        697 D--PVVRAAALDVLRALRAGDAALFAAALGDPDH--RVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG  772 (897)
T ss_pred             C--HHHHHHHHHHHHhhccCCHHHHHHHhcCCCH--HHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc
Confidence            4  236776666665543        11111100  00000000110     1233333333334444444444333211


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426          164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM  243 (604)
Q Consensus       164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea  243 (604)
                           .+     ...+.+..+|+++.  ...-..++.+|.+.+..      ..++..++..|+    .+||+.|++|+++
T Consensus       773 -----~~-----~~~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~----d~d~~VR~~Aa~a  830 (897)
T PRK13800        773 -----GA-----PAGDAVRALTGDPD--PLVRAAALAALAELGCP------PDDVAAATAALR----ASAWQVRQGAARA  830 (897)
T ss_pred             -----cc-----hhHHHHHHHhcCCC--HHHHHHHHHHHHhcCCc------chhHHHHHHHhc----CCChHHHHHHHHH
Confidence                 00     00233445555543  11233333444443211      112233455565    6899999999999


Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          244 LNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       244 L~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                      |..+- .  ..    -...++..|    -|+-+.||.++.+||-.|
T Consensus       831 L~~l~-~--~~----a~~~L~~~L----~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        831 LAGAA-A--DV----AVPALVEAL----TDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHhcc-c--cc----hHHHHHHHh----cCCCHHHHHHHHHHHhcc
Confidence            98752 1  11    123344444    588999999999999877

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.68  E-value=0.00093  Score=64.10  Aligned_cols=174  Identities=18%  Similarity=0.221  Sum_probs=108.9

Q ss_pred             chhhHHHHHHHHHHHh-----CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh
Q 007426           59 SGEYTISLYEVLARVH-----GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS  133 (604)
Q Consensus        59 vRke~I~Lle~LArvH-----G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s  133 (604)
                      .|.++|.-+..+..-|     ...++++|.+++..|++.+.|.-|.+ ++.|| .++..|+.++...      -...+..
T Consensus        23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v-~~~A~-~~l~~l~~~l~~~------~~~~~~~   94 (228)
T PF12348_consen   23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKV-SKTAC-QLLSDLARQLGSH------FEPYADI   94 (228)
T ss_dssp             HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---H-HHHHH-HHHHHHHHHHGGG------GHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHH-HHHHH-HHHHHHHHHHhHh------HHHHHHH
Confidence            5777888788887777     22355666677788999999998776 67777 6777888665422      2334667


Q ss_pred             hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHH-HHHHHHhhcCCccchh-hHHHHHHHHHHhhh---h
Q 007426          134 LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKV-CQNVAGALEEKSTQTN-SHMGLVMALAKHNA---L  208 (604)
Q Consensus       134 l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rl-c~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~---~  208 (604)
                      ++.+|++.++..++.+..-|.-||.++++..     +  ...++ ...+..++++|+-+.+ .-+..+..+....+   .
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~-----~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESC-----S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHC-----C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            8899999999999999999999999999963     2  22344 4556667888887665 23333333333333   3


Q ss_pred             HHHHhH--HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426          209 IVEAYA--RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL  251 (604)
Q Consensus       209 iiea~g--~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~  251 (604)
                      .+...+  ..+++.+..+|.    ..|-..|++|-+++..+..+.
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~----D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLS----DADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHT----SS-HHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHC
Confidence            333333  568888888888    579999999999999998665

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.67  E-value=0.0011  Score=63.71  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=112.5

Q ss_pred             cCCchhHHHHHHHHHHHHhhc-CCCChhHHHhhhccC--------CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHH
Q 007426           17 DKDADSRKSAMKALKSYVKDL-DSKAIPLFLAQVSET--------KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMT   87 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~L-d~dtlP~FLscV~dt--------d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KIms   87 (604)
                      +.|=+.|.-|+..|+++++.- ..+..+.|+.+|.+.        .+.-+.+-+.++.+++.|+..=|..+-||+..++.
T Consensus        18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~   97 (228)
T PF12348_consen   18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP   97 (228)
T ss_dssp             -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            347888899999999999987 445567776666521        22225688999999999999999999999999999


Q ss_pred             HHHhhccCCCCChhhHHHHHHHHHHHHhhcC-CCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426           88 TITKTLASSAGSFPLQQACSRVVPAIARYGI-DPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW  166 (604)
Q Consensus        88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~i-dp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw  166 (604)
                      .+++++.|+..  .+++++..++-+|..++. .+           ..+..-|..++.+++..+-..++.||..+++..++
T Consensus        98 ~Ll~~~~~~~~--~i~~~a~~~L~~i~~~~~~~~-----------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   98 PLLKKLGDSKK--FIREAANNALDAIIESCSYSP-----------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             HHHHGGG---H--HHHHHHHHHHHHHHTTS-H-------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHccccH--HHHHHHHHHHHHHHHHCCcHH-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence            99999999763  479999999999997753 11           22356666777888888999999999999996331


Q ss_pred             ---CCCCHHHHHHHHHHHHHhhcCCccch
Q 007426          167 ---RFASDEMVNKVCQNVAGALEEKSTQT  192 (604)
Q Consensus       167 ---r~Ap~elv~rlc~Rv~kaL~~ks~qt  192 (604)
                         .......+..+.+-+.+.|.++....
T Consensus       165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~V  193 (228)
T PF12348_consen  165 DSSVLQKSAFLKQLVKALVKLLSDADPEV  193 (228)
T ss_dssp             --GGG--HHHHHHHHHHHHHHHTSS-HHH
T ss_pred             hHhhhcccchHHHHHHHHHHHCCCCCHHH
Confidence               01122345778999999999876444

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.51  E-value=0.0015  Score=75.24  Aligned_cols=234  Identities=16%  Similarity=0.256  Sum_probs=160.5

Q ss_pred             ChHHHHHHhhhcCCch-hHHHHHHHHHHHHhhcCCCCh-----hHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426            6 SPILRQELANLDKDAD-SRKSAMKALKSYVKDLDSKAI-----PLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV   79 (604)
Q Consensus         6 sp~~rqeL~KLs~DRD-T~~iA~~eLesiak~Ld~dtl-----P~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia   79 (604)
                      +|.|-.-+..|--|+. -|++.++-.++|+-.|-.-.|     -.++.-|+-+-..+...-.-.+--|++++..-|.-+-
T Consensus       715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~k  794 (1172)
T KOG0213|consen  715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVK  794 (1172)
T ss_pred             hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccc
Confidence            4666666667763444 467899999999988854333     2333333333222222233567789999999999999


Q ss_pred             ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chh--hHHHHHH
Q 007426           80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESL--TAGAALC  156 (604)
Q Consensus        80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~v--QsGAALC  156 (604)
                      ||+++|+++|..||....  .-||+.-+|.++.||-.+.   +-+|  .+.++-+=-=|.|-|+++- |.+  -.||--|
T Consensus       795 pylpqi~stiL~rLnnks--a~vRqqaadlis~la~Vlk---tc~e--e~~m~~lGvvLyEylgeeypEvLgsILgAika  867 (1172)
T KOG0213|consen  795 PYLPQICSTILWRLNNKS--AKVRQQAADLISSLAKVLK---TCGE--EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA  867 (1172)
T ss_pred             cchHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHH---hccH--HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence            999999999999997664  2489999999999995443   1112  1234445556899999987 444  5677777


Q ss_pred             HHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHH---HHHHhcCCCCCC
Q 007426          157 LKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQS---GLRILNAGPGEA  232 (604)
Q Consensus       157 LAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S---~l~~L~~~~~ss  232 (604)
                      +--.|.-+.- ++|   ..+++||+...|++++-.-. .-+.||+.++..++.-+  ..+.-++-   .++.|.    +-
T Consensus       868 I~nvigm~km-~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v--~aREWMRIcfeLlelLk----ah  937 (1172)
T KOG0213|consen  868 IVNVIGMTKM-TPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV--SAREWMRICFELLELLK----AH  937 (1172)
T ss_pred             HHHhcccccc-CCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC--CHHHHHHHHHHHHHHHH----HH
Confidence            7777766552 333   56899999999999986665 46778887777766543  33333332   345555    55


Q ss_pred             CHHHHHHHHHHHHHHHhhcCCCch
Q 007426          233 NSQKRLLAIQMLNFLMKSLDPRSI  256 (604)
Q Consensus       233 DWq~RKAAAeaL~~la~~~d~~~L  256 (604)
                      +=..|.||.+.+..|++..++..+
T Consensus       938 kK~iRRaa~nTfG~IakaIGPqdV  961 (1172)
T KOG0213|consen  938 KKEIRRAAVNTFGYIAKAIGPQDV  961 (1172)
T ss_pred             HHHHHHHHHhhhhHHHHhcCHHHH
Confidence            568899999999999988877544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.016  Score=65.37  Aligned_cols=258  Identities=20%  Similarity=0.245  Sum_probs=166.7

Q ss_pred             CchhHHHHHHHHHHHHhhcCCC--ChhHHHhhhccCCCCC-CCchhh-HHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc
Q 007426           19 DADSRKSAMKALKSYVKDLDSK--AIPLFLAQVSETKENG-SVSGEY-TISLYEVLARVHGANIVPQIDSIMTTITKTLA   94 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~d--tlP~FLscV~dtd~~~-s~vRke-~I~Lle~LArvHG~~iaPhL~KImstIVRRLs   94 (604)
                      +-..+.-|..++-.+++++-..  .=-.|+.-++.....+ ++-++| .+=-++.+...-|...-|++-.++=+|.--..
T Consensus       147 ~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~  226 (569)
T KOG1242|consen  147 KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG  226 (569)
T ss_pred             cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh
Confidence            6667777889999999988433  3456888888774443 445555 55556777777799999999999999999888


Q ss_pred             CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc--c-ch--hh-HH---------HHHHHHH
Q 007426           95 SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS--Q-ES--LT-AG---------AALCLKA  159 (604)
Q Consensus        95 DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q--q-e~--vQ-sG---------AALCLAA  159 (604)
                      |..-  .||+|=.+++-|+-+++..         .-+..|+.||..+|.+.  + +.  +| .|         -++||..
T Consensus       227 d~~~--~Vr~Aa~~a~kai~~~~~~---------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~  295 (569)
T KOG1242|consen  227 DKIN--KVREAAVEAAKAIMRCLSA---------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPD  295 (569)
T ss_pred             ccch--hhhHHHHHHHHHHHHhcCc---------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhH
Confidence            8875  4799999999999988652         12467888888888777  2 11  11 11         1223333


Q ss_pred             Hhcc---CCCCC------------------CCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHH
Q 007426          160 LVDS---DNWRF------------------ASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLI  218 (604)
Q Consensus       160 lVEs---~nwr~------------------Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll  218 (604)
                      +|-.   .-|-.                  -.++..++..|++..+|.+|.+.+.+=+...++ -+....+.++..+.++
T Consensus       296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~-ttFV~~V~~psLalmv  374 (569)
T KOG1242|consen  296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGA-TTFVAEVDAPSLALMV  374 (569)
T ss_pred             hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcc-eeeeeeecchhHHHHH
Confidence            2210   01211                  111234556666677777776666422222211 1111223334444444


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc-CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH-HHHHHh
Q 007426          219 QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL-DPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL-QTAKRI  292 (604)
Q Consensus       219 ~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~-d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL-q~wK~I  292 (604)
                      +=..+-|.    .-+--+++.+++.+..+.+.+ |+..|+.++.+++-.|+.-=.|=||.||..+.+|| -+-|.+
T Consensus       375 piL~R~l~----eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  375 PILKRGLA----ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             HHHHHHHh----hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            44444444    444444555666677767677 89999999999999999999999999999999999 555555

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.22  E-value=0.0071  Score=70.73  Aligned_cols=219  Identities=17%  Similarity=0.164  Sum_probs=119.2

Q ss_pred             CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426           18 KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA   97 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd   97 (604)
                      .|.+-|..|++.|..+++.+.+  .+..+..|.+   ++..||..++..|..+.  .++         ...+++.|.|++
T Consensus       664 ~d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~L~~---~d~~VR~~A~~aL~~~~--~~~---------~~~l~~~L~D~d  727 (897)
T PRK13800        664 GAAAVRRAAAEGLRELVEVLPP--APALRDHLGS---PDPVVRAAALDVLRALR--AGD---------AALFAAALGDPD  727 (897)
T ss_pred             CCHHHHHHHHHHHHHHHhccCc--hHHHHHHhcC---CCHHHHHHHHHHHHhhc--cCC---------HHHHHHHhcCCC
Confidence            3566788888899888775544  4555555543   33468888887776653  111         123456677776


Q ss_pred             CChhhHHHHHHHHHHH------HhhcCCCCCc-cccchhhHHhh-------hchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           98 GSFPLQQACSRVVPAI------ARYGIDPTTP-EDKKRHIIHSL-------CKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        98 SS~~vR~AC~kvv~AL------Ary~idp~~~-~~~~~~ii~sl-------~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      -  .||.+=+.+.+.+      ...+.|+... -...-..+..+       +.+|...|..+..-|..-|+..|+..-+ 
T Consensus       728 ~--~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-  804 (897)
T PRK13800        728 H--RVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC-  804 (897)
T ss_pred             H--HHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-
Confidence            3  3565433333321      1111122110 00000000111       2234444444444566666666665522 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426          164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM  243 (604)
Q Consensus       164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea  243 (604)
                            +.+.+    ..+..+|++++-+-  -...+.+|..++.       ..-+..++..|+    ..||+.|++|+++
T Consensus       805 ------~~~~~----~~l~~aL~d~d~~V--R~~Aa~aL~~l~~-------~~a~~~L~~~L~----D~~~~VR~~A~~a  861 (897)
T PRK13800        805 ------PPDDV----AAATAALRASAWQV--RQGAARALAGAAA-------DVAVPALVEALT----DPHLDVRKAAVLA  861 (897)
T ss_pred             ------cchhH----HHHHHHhcCCChHH--HHHHHHHHHhccc-------cchHHHHHHHhc----CCCHHHHHHHHHH
Confidence                  11111    23566777764221  2334445544431       122455666676    6899999999999


Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          244 LNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       244 L~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      |..+  ..+        ......|+..-.|.=+.||.++.+||+.
T Consensus       862 L~~~--~~~--------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        862 LTRW--PGD--------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             Hhcc--CCC--------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9885  111        2345566666678899999999999975

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.038  Score=66.09  Aligned_cols=244  Identities=16%  Similarity=0.228  Sum_probs=143.2

Q ss_pred             HHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q 007426           32 SYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVV  110 (604)
Q Consensus        32 siak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv  110 (604)
                      .|++++=++.-|-.|.-|..+ .++.+.-|+-++++|..+.+.-|....|||.-+..=..+.|.|+++.  ||-+-+.++
T Consensus       106 eia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~--vr~~a~rA~  183 (1075)
T KOG2171|consen  106 EIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP--VRVAAVRAL  183 (1075)
T ss_pred             HHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch--HHHHHHHHH
Confidence            455555343555555444443 44445679999999999999999999999999999999999999875  799999999


Q ss_pred             HHHHhhcC-CCCCccccchhhHHhhhchhHHhhhcccc-hhhHHHHHHHHHH---hccCCCCCCCHHHHH--HHHHHHHH
Q 007426          111 PAIARYGI-DPTTPEDKKRHIIHSLCKPLSDSLLGSQE-SLTAGAALCLKAL---VDSDNWRFASDEMVN--KVCQNVAG  183 (604)
Q Consensus       111 ~ALAry~i-dp~~~~~~~~~ii~sl~KPL~EaL~~qqe-~vQsGAALCLAAl---VEs~nwr~Ap~elv~--rlc~Rv~k  183 (604)
                      ++.+.|.- ++.-     ..-+..++--++..|.+-.+ .-.--|+.||-++   +|+.. ++-.+-+.+  ++|..|++
T Consensus       184 ~a~~~~~~~~~~~-----~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~  257 (1075)
T KOG2171|consen  184 GAFAEYLENNKSE-----VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAK  257 (1075)
T ss_pred             HHHHHHhccchHH-----HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhh
Confidence            99998862 1100     11122222223333333221 1122234444444   44421 111111111  22322221


Q ss_pred             hhcCCccchh---hHHHHHHHHHHh------------------------------------------------------h
Q 007426          184 ALEEKSTQTN---SHMGLVMALAKH------------------------------------------------------N  206 (604)
Q Consensus       184 aL~~ks~qtk---Ahl~LV~ALs~~------------------------------------------------------n  206 (604)
                         ++...--   .-|.++.++++.                                                      -
T Consensus       258 ---n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lD  334 (1075)
T KOG2171|consen  258 ---NKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALD  334 (1075)
T ss_pred             ---cccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHH
Confidence               1111000   011112222221                                                      1


Q ss_pred             hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426          207 ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       207 ~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL  286 (604)
                      .....-+|-.+++-..+.|..-+.+.+|..|+||--+|..++.... +.+..++..++...=+.=-|-=+.||-|+.-|+
T Consensus       335 rlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai  413 (1075)
T KOG2171|consen  335 RLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI  413 (1075)
T ss_pred             HHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            1111112222333333444444459999999999999999998775 567778899888887888899999999998887


Q ss_pred             H
Q 007426          287 Q  287 (604)
Q Consensus       287 q  287 (604)
                      -
T Consensus       414 g  414 (1075)
T KOG2171|consen  414 G  414 (1075)
T ss_pred             H
Confidence            4

>PRK09687 putative lyase; Provisional

Probab=96.94  E-value=0.045  Score=56.31  Aligned_cols=202  Identities=12%  Similarity=0.146  Sum_probs=120.5

Q ss_pred             hhhcCCchh--HHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHh
Q 007426           14 ANLDKDADS--RKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITK   91 (604)
Q Consensus        14 ~KLs~DRDT--~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVR   91 (604)
                      ..|. |.|+  |..|+..|..+=   +++.++. |..+..  ++...+|.+++..|+.|.. ++..    ..+.+..+..
T Consensus        30 ~~L~-d~d~~vR~~A~~aL~~~~---~~~~~~~-l~~ll~--~~d~~vR~~A~~aLg~lg~-~~~~----~~~a~~~L~~   97 (280)
T PRK09687         30 RLLD-DHNSLKRISSIRVLQLRG---GQDVFRL-AIELCS--SKNPIERDIGADILSQLGM-AKRC----QDNVFNILNN   97 (280)
T ss_pred             HHHh-CCCHHHHHHHHHHHHhcC---cchHHHH-HHHHHh--CCCHHHHHHHHHHHHhcCC-Cccc----hHHHHHHHHH
Confidence            3444 5555  667888876542   3444454 444553  3335789999999988643 1110    3455555554


Q ss_pred             h-ccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCC
Q 007426           92 T-LASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFAS  170 (604)
Q Consensus        92 R-LsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap  170 (604)
                      . +.|++.  .||...+.+.|-+......+          ...+..+|..++...+..|..+||..|...        ..
T Consensus        98 l~~~D~d~--~VR~~A~~aLG~~~~~~~~~----------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--------~~  157 (280)
T PRK09687         98 LALEDKSA--CVRASAINATGHRCKKNPLY----------SPKIVEQSQITAFDKSTNVRFAVAFALSVI--------ND  157 (280)
T ss_pred             HHhcCCCH--HHHHHHHHHHhccccccccc----------chHHHHHHHHHhhCCCHHHHHHHHHHHhcc--------CC
Confidence            4 477763  47888777777664221111          123556677777777778999988888432        12


Q ss_pred             HHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426          171 DEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS  250 (604)
Q Consensus       171 ~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~  250 (604)
                      .+    ..+-+..+|+++...  .....+.+|.+....     ....+...+..|.    ..||..|++|+.+|..+.  
T Consensus       158 ~~----ai~~L~~~L~d~~~~--VR~~A~~aLg~~~~~-----~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~--  220 (280)
T PRK09687        158 EA----AIPLLINLLKDPNGD--VRNWAAFALNSNKYD-----NPDIREAFVAMLQ----DKNEEIRIEAIIGLALRK--  220 (280)
T ss_pred             HH----HHHHHHHHhcCCCHH--HHHHHHHHHhcCCCC-----CHHHHHHHHHHhc----CCChHHHHHHHHHHHccC--
Confidence            22    345566778776542  345555566655211     1123455566666    689999999999998742  


Q ss_pred             cCCCchhhhHHHHHHHHHh
Q 007426          251 LDPRSIFSELELIIEGMEN  269 (604)
Q Consensus       251 ~d~~~L~se~~S~I~~LE~  269 (604)
                       ++    .-+..+|+.|+.
T Consensus       221 -~~----~av~~Li~~L~~  234 (280)
T PRK09687        221 -DK----RVLSVLIKELKK  234 (280)
T ss_pred             -Ch----hHHHHHHHHHcC
Confidence             11    245677777775

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.55  E-value=0.046  Score=64.82  Aligned_cols=230  Identities=19%  Similarity=0.190  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCChhHHHhh-hccC-----CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426           22 SRKSAMKALKSYVKDLDSKAIPLFLAQ-VSET-----KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS   95 (604)
Q Consensus        22 T~~iA~~eLesiak~Ld~dtlP~FLsc-V~dt-----d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD   95 (604)
                      .+.--+..++.+++.+ .+.+|.-+.+ |..-     .+++.-+-.+++.++.+|+...+..++-+-.+|+.+|+|-|++
T Consensus       667 lr~~~l~a~~~L~~~~-~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S  745 (1233)
T KOG1824|consen  667 LRLATLTALDKLVKNY-SDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS  745 (1233)
T ss_pred             HHHHHHHHHHHHHHHH-hccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
Confidence            3344556677777777 5566665432 2221     1222346789999999999999999999999999999999999


Q ss_pred             CCCChhhH----HHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chhhHHHHHHHHHHhccCCCCCCC
Q 007426           96 SAGSFPLQ----QACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESLTAGAALCLKALVDSDNWRFAS  170 (604)
Q Consensus        96 sdSS~~vR----~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~vQsGAALCLAAlVEs~nwr~Ap  170 (604)
                      |-    +|    .+|-+..-||.  .++++.-  +-...+..+.+|..|--.... +.+=-..|.|.|++..+..  .-+
T Consensus       746 pl----lqg~al~~~l~~f~alV--~t~~~~l--~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~--~~s  815 (1233)
T KOG1824|consen  746 PL----LQGGALSALLLFFQALV--ITKEPDL--DYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP--QKS  815 (1233)
T ss_pred             cc----ccchHHHHHHHHHHHHH--hcCCCCc--cHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc--ccc
Confidence            85    33    36666666665  3332221  122345556666655444322 4444558999999999732  112


Q ss_pred             HHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426          171 DEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS  250 (604)
Q Consensus       171 ~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~  250 (604)
                      ..++-++..   .+++.++.-++=||.++ +|.+++.-.-..+..-+-..+++.++    +.+=-.++||+.||.+|+. 
T Consensus       816 ~s~a~kl~~---~~~s~~s~~~ikvfa~L-slGElgr~~~~s~~~e~~~~iieaf~----sp~edvksAAs~ALGsl~v-  886 (1233)
T KOG1824|consen  816 KSLATKLIQ---DLQSPKSSDSIKVFALL-SLGELGRRKDLSPQNELKDTIIEAFN----SPSEDVKSAASYALGSLAV-  886 (1233)
T ss_pred             hhHHHHHHH---HHhCCCCchhHHHHHHh-hhhhhccCCCCCcchhhHHHHHHHcC----CChHHHHHHHHHHhhhhhc-
Confidence            334333332   22333444444566665 56676655433344445566778888    6677889999999999863 


Q ss_pred             cCCCchhhhHHHHHHHHHhccCCC
Q 007426          251 LDPRSIFSELELIIEGMENCQSDQ  274 (604)
Q Consensus       251 ~d~~~L~se~~S~I~~LE~cRfDK  274 (604)
                         ..+..++.-+++-.|+-..+|
T Consensus       887 ---gnl~~yLpfil~qi~sqpk~Q  907 (1233)
T KOG1824|consen  887 ---GNLPKYLPFILEQIESQPKRQ  907 (1233)
T ss_pred             ---CchHhHHHHHHHHHhcchHhH
Confidence               246667777776666655544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.53  E-value=0.026  Score=60.03  Aligned_cols=219  Identities=18%  Similarity=0.201  Sum_probs=137.9

Q ss_pred             CCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhH-HHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCccc
Q 007426            4 CLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPL-FLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQ   81 (604)
Q Consensus         4 ~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~-FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPh   81 (604)
                      .+.|.|.+.|+  +.++..|+-|+-.|-++.+. +|+.++. |+..|... .++...|...++.++..+ +.-.+...+.
T Consensus       114 ~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~  189 (526)
T PF01602_consen  114 PLIPDVIKLLS--DPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL  189 (526)
T ss_dssp             HHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred             HHHHHHHHHhc--CCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence            34566666666  45778899999999999986 7777776 45555544 344456888999999888 2222222266


Q ss_pred             HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHh
Q 007426           82 IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALV  161 (604)
Q Consensus        82 L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlV  161 (604)
                      +++.+..+.+.|.+++     --...+.+..|..|+..  ..++...   ..++.+|...|...+..|...++=|+..+-
T Consensus       190 ~~~~~~~L~~~l~~~~-----~~~q~~il~~l~~~~~~--~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  190 IPKLIRILCQLLSDPD-----PWLQIKILRLLRRYAPM--EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHHHHHHHHHHTCCS-----HHHHHHHHHHHTTSTSS--SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhhcccccc-----hHHHHHHHHHHHhcccC--ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            7777777777666665     13556666666666542  1111110   457777777777788888888877777554


Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426          162 DSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLA  240 (604)
Q Consensus       162 Es~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAA  240 (604)
                      .       ..+++..+++.+.++|.++....+ .-+..+.-+++.++..+. +    ....+.+|..   ++|-..|+.|
T Consensus       260 ~-------~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~----~~~~~~~l~~---~~d~~Ir~~~  324 (526)
T PF01602_consen  260 P-------SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N----QSLILFFLLY---DDDPSIRKKA  324 (526)
T ss_dssp             S-------SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T----HHHHHHHHHC---SSSHHHHHHH
T ss_pred             c-------chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h----hhhhhheecC---CCChhHHHHH
Confidence            4       344788999999999997654333 233334444444422222 1    1222345552   5788899999


Q ss_pred             HHHHHHHHhhc
Q 007426          241 IQMLNFLMKSL  251 (604)
Q Consensus       241 AeaL~~la~~~  251 (604)
                      .+.|..++...
T Consensus       325 l~lL~~l~~~~  335 (526)
T PF01602_consen  325 LDLLYKLANES  335 (526)
T ss_dssp             HHHHHHH--HH
T ss_pred             HHHHhhccccc
Confidence            99998877433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.49  E-value=0.087  Score=62.62  Aligned_cols=198  Identities=16%  Similarity=0.121  Sum_probs=125.8

Q ss_pred             CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhH-HHHHHHHHHHHhhcCCCCCccccchhhHHhhhc
Q 007426           58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQ-QACSRVVPAIARYGIDPTTPEDKKRHIIHSLCK  136 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR-~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~K  136 (604)
                      +.|--|+.+|.+|..+.++.+++|++-++..|+++|.|-.||-..+ +|-+-...+|..+.-      +.=...+..+.-
T Consensus       450 kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p------~~fhp~~~~Ls~  523 (1233)
T KOG1824|consen  450 KTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPP------EVFHPHLSALSP  523 (1233)
T ss_pred             cchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCCh------hhcccchhhhhh
Confidence            4788999999999999999999999999999999998876654433 677777788775532      111223456777


Q ss_pred             hhHHhhhcccchhhHHHHHHHHHHhccCC-----CCCCCHHHHHHHHHHHHHhhcCCccchh---hHHHHHHHHHHhhhh
Q 007426          137 PLSDSLLGSQESLTAGAALCLKALVDSDN-----WRFASDEMVNKVCQNVAGALEEKSTQTN---SHMGLVMALAKHNAL  208 (604)
Q Consensus       137 PL~EaL~~qqe~vQsGAALCLAAlVEs~n-----wr~Ap~elv~rlc~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~~  208 (604)
                      |+.-|.++.---+++-|=+-...+|.-=-     -.|-..+.|..|.--+.+.|+.+-.--+   ..+..++=++..-+.
T Consensus       524 ~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD  603 (1233)
T KOG1824|consen  524 PVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD  603 (1233)
T ss_pred             HHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence            77777777665565544443344443211     1133456788888888888887543332   333333332323233


Q ss_pred             HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 007426          209 IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGM  267 (604)
Q Consensus       209 iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~L  267 (604)
                      ......+..++-..+-|+      +=-||.+|+.||..|+.+.=.-.+..-...++..+
T Consensus       604 ~l~~eL~~~L~il~eRl~------nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l  656 (1233)
T KOG1824|consen  604 FLGNELPRTLPILLERLG------NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL  656 (1233)
T ss_pred             hhhhhhHHHHHHHHHHHh------chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence            433443344444444444      55799999999999986653333344445555544

>PRK09687 putative lyase; Provisional

Probab=96.49  E-value=0.3  Score=50.38  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=132.7

Q ss_pred             CCchhHHHHHHHHHHHHhhc--CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426           18 KDADSRKSAMKALKSYVKDL--DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS   95 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~L--d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD   95 (604)
                      .|+.-|..|+..|-.+-..-  ....+|.+..-+.  .+++..||..++..|+.++.-+    ..+.++.+..+...+.|
T Consensus        66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D  139 (280)
T PRK09687         66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFD  139 (280)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhC
Confidence            37788899999998865311  1234555554433  3444679999999998875322    33467788888888888


Q ss_pred             CCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH
Q 007426           96 SAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN  175 (604)
Q Consensus        96 sdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~  175 (604)
                      ++.  .||-+   ++.+|+... +            .....+|..+|..++..|...|+.+|..+ ..     .+++.  
T Consensus       140 ~~~--~VR~~---a~~aLg~~~-~------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~-----~~~~~--  193 (280)
T PRK09687        140 KST--NVRFA---VAFALSVIN-D------------EAAIPLLINLLKDPNGDVRNWAAFALNSN-KY-----DNPDI--  193 (280)
T ss_pred             CCH--HHHHH---HHHHHhccC-C------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC-----CCHHH--
Confidence            864  35654   445554331 1            23567889999888888999999999987 21     12333  


Q ss_pred             HHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCc
Q 007426          176 KVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRS  255 (604)
Q Consensus       176 rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~  255 (604)
                        -+-+.++|+++...-  ....+.+|.+...       ...++.++..|+    .++|  |+.|+++|..|-   ++. 
T Consensus       194 --~~~L~~~L~D~~~~V--R~~A~~aLg~~~~-------~~av~~Li~~L~----~~~~--~~~a~~ALg~ig---~~~-  252 (280)
T PRK09687        194 --REAFVAMLQDKNEEI--RIEAIIGLALRKD-------KRVLSVLIKELK----KGTV--GDLIIEAAGELG---DKT-  252 (280)
T ss_pred             --HHHHHHHhcCCChHH--HHHHHHHHHccCC-------hhHHHHHHHHHc----CCch--HHHHHHHHHhcC---CHh-
Confidence              334667777664333  4555666666542       234677788888    4565  788999988853   111 


Q ss_pred             hhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          256 IFSELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       256 L~se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                         ...-.+..++  +++ =..|+..+.+||+
T Consensus       253 ---a~p~L~~l~~--~~~-d~~v~~~a~~a~~  278 (280)
T PRK09687        253 ---LLPVLDTLLY--KFD-DNEIITKAIDKLK  278 (280)
T ss_pred             ---HHHHHHHHHh--hCC-ChhHHHHHHHHHh
Confidence               2223333333  233 5678888888875

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.47  E-value=0.12  Score=65.85  Aligned_cols=266  Identities=16%  Similarity=0.164  Sum_probs=161.2

Q ss_pred             CchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHH-HhCCCCccc---HHHHHHHHHhhcc
Q 007426           19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLAR-VHGANIVPQ---IDSIMTTITKTLA   94 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LAr-vHG~~iaPh---L~KImstIVRRLs   94 (604)
                      |...++.|+..|..+++.=+.+.++++++= ..+++  +.+..++|+.++-+.. .+++.+.-.   -...+..++.-|.
T Consensus       543 d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L-Llsdd--~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~  619 (2102)
T PLN03200        543 GPKGQEIAAKTLTKLVRTADAATISQLTAL-LLGDL--PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS  619 (2102)
T ss_pred             CHHHHHHHHHHHHHHHhccchhHHHHHHHH-hcCCC--hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc
Confidence            788889999999999998888899997754 44444  3457778887755533 233211100   0135566666666


Q ss_pred             CCCCChhhHHHHHHHHHHHHhhcCC-CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHH
Q 007426           95 SSAGSFPLQQACSRVVPAIARYGID-PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEM  173 (604)
Q Consensus        95 DsdSS~~vR~AC~kvv~ALAry~id-p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~el  173 (604)
                      +..     ...--+++.+|+.|+.. +..   -..-+..-.+-||..-|......++--||.||.++-.+.+ ..--..+
T Consensus       620 sgs-----~~ikk~Aa~iLsnL~a~~~d~---~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~  690 (2102)
T PLN03200        620 SSK-----EETQEKAASVLADIFSSRQDL---CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSY  690 (2102)
T ss_pred             CCC-----HHHHHHHHHHHHHHhcCChHH---HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence            554     23444455566655431 111   0112334478899999999888999999999999987432 1001123


Q ss_pred             HHH-HHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426          174 VNK-VCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL  251 (604)
Q Consensus       174 v~r-lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~  251 (604)
                      +.. +.+-++++|+.++..-+ .-+..+..+++......+..-...|+...++|+    +++-..|+.|+-+|..|...-
T Consensus       691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr----~G~~~~k~~Aa~AL~~L~~~~  766 (2102)
T PLN03200        691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR----EGTLEGKRNAARALAQLLKHF  766 (2102)
T ss_pred             HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH----hCChHHHHHHHHHHHHHHhCC
Confidence            443 67779999998766655 233344455666544433343445889999999    677788888999999887554


Q ss_pred             CCCc-hhhhHH------HHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc-CCCccccCCC
Q 007426          252 DPRS-IFSELE------LIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE-NGPKFEKGSG  305 (604)
Q Consensus       252 d~~~-L~se~~------S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~-~g~~~~~~~~  305 (604)
                      ..+. |.....      ..+..|+.-.+|-+     +..+||+.--.+++- .|..+.+++.
T Consensus       767 ~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~-----~~~~al~~l~~l~~~~~~~~~~~~~~  823 (2102)
T PLN03200        767 PVDDVLKDSVQCRGTVLALVDLLNSTDLDSS-----ATSEALEALALLARTKGGANFSHPPW  823 (2102)
T ss_pred             ChhHHHHHHHHHhCcHHHHHHHHhcCCcchh-----hHHHHHHHHHHHHhhcccCCCCCCch
Confidence            3222 211111      11222444334322     446888888888864 5555544443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.00  E-value=1.7  Score=46.77  Aligned_cols=242  Identities=15%  Similarity=0.184  Sum_probs=149.1

Q ss_pred             chhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCC----------CCC---CchhhHHHH-HHHHHHHhCCCCcccHHHH
Q 007426           20 ADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKE----------NGS---VSGEYTISL-YEVLARVHGANIVPQIDSI   85 (604)
Q Consensus        20 RDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~----------~~s---~vRke~I~L-le~LArvHG~~iaPhL~KI   85 (604)
                      ...-..+.+=+..|++.|+.+.=..|+.++++.--          ..+   ...+..+.| -+.++..+.+-..|.+..+
T Consensus       111 ~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~l  190 (415)
T PF12460_consen  111 DRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEEL  190 (415)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHH
Confidence            34446677888999999988777777776664210          011   123344444 4678889999999999999


Q ss_pred             HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC----------------Cccccchhh---HHhhhc----------
Q 007426           86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT----------------TPEDKKRHI---IHSLCK----------  136 (604)
Q Consensus        86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~----------------~~~~~~~~i---i~sl~K----------  136 (604)
                      +..++.......... .|-+|.+.++.|.-+..+..                .........   +..+.|          
T Consensus       191 l~~l~~~~~~~~~~~-~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~  269 (415)
T PF12460_consen  191 LQSLLNLALSSEDEF-SRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA  269 (415)
T ss_pred             HHHHHHHHHcCCChH-HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence            999999876665443 79999999999994433211                011111111   111111          


Q ss_pred             -hhHHhhhccc--chhhHHHHHHHHHHhcc-CCC----CCCCH------HHHHHHHHHHHHhhcCCccchh-hHHHHHHH
Q 007426          137 -PLSDSLLGSQ--ESLTAGAALCLKALVDS-DNW----RFASD------EMVNKVCQNVAGALEEKSTQTN-SHMGLVMA  201 (604)
Q Consensus       137 -PL~EaL~~qq--e~vQsGAALCLAAlVEs-~nw----r~Ap~------elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~A  201 (604)
                       .+.+-|.+-.  +.+.-.||=++.-++.- +..    .++-.      -.++.+.|++....++.+...| .++.++..
T Consensus       270 ~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  270 TELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence             1122222211  33445555555555543 110    01111      1334466667666666544344 44444444


Q ss_pred             HHHhh-hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 007426          202 LAKHN-ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGM  267 (604)
Q Consensus       202 Ls~~n-~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~L  267 (604)
                      +.++. ..++..+...|++=.++.|+    ..|...|.++.++|..++..- +..+.+++.++|..|
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~----~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~L  411 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLS----LPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRL  411 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence            44444 66888899999999999998    789999999999999998555 567777788888765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.97  E-value=0.19  Score=52.54  Aligned_cols=106  Identities=22%  Similarity=0.341  Sum_probs=63.6

Q ss_pred             HHHHHhhhc-CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC---------CCCCCCchhhHHHHHHHHHHHhC--C
Q 007426            9 LRQELANLD-KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET---------KENGSVSGEYTISLYEVLARVHG--A   76 (604)
Q Consensus         9 ~rqeL~KLs-~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt---------d~~~s~vRke~I~Lle~LArvHG--~   76 (604)
                      +++.|..|. |-..||..|   |+.|.+-|...-+|-|+..-..|         +...+.-+.-+.++++.||-.=|  .
T Consensus        45 L~~~Id~l~eK~~~~Re~a---L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAA---LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE  121 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHH---HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence            566777776 223444444   55555556565666666433222         22222223346678888887744  4


Q ss_pred             CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426           77 NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG  117 (604)
Q Consensus        77 ~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~  117 (604)
                      ..--.+..+...+.+.+.|...++.+|.+|..+.+.++-++
T Consensus       122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~  162 (309)
T PF05004_consen  122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVG  162 (309)
T ss_pred             cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence            44444455555566666777666778999999888888553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=0.098  Score=60.40  Aligned_cols=251  Identities=17%  Similarity=0.201  Sum_probs=156.4

Q ss_pred             CchhHHHHHHHHHHHHhh----cCCC--------ChhHHHhhhcc-----------------------------------
Q 007426           19 DADSRKSAMKALKSYVKD----LDSK--------AIPLFLAQVSE-----------------------------------   51 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~----Ld~d--------tlP~FLscV~d-----------------------------------   51 (604)
                      |--|..-|+.+|.+|-++    ||.+        .||.||-=...                                   
T Consensus       141 d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~l  220 (885)
T KOG2023|consen  141 DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEIL  220 (885)
T ss_pred             cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence            344778899999988764    3331        38888743322                                   


Q ss_pred             ---CCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccch
Q 007426           52 ---TKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKR  128 (604)
Q Consensus        52 ---td~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~  128 (604)
                         +.++.+.|||+.-+-|-.|-.+|.+.|+||++.||..++.+-.|+|=.|. =.||- .--|+|-.   |     --.
T Consensus       221 FalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VA-LEACE-Fwla~aeq---p-----i~~  290 (885)
T KOG2023|consen  221 FALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVA-LEACE-FWLALAEQ---P-----ICK  290 (885)
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHH-HHHHH-HHHHHhcC---c-----CcH
Confidence               23334679999999999999999999999999999999999999997653 35773 33444422   2     113


Q ss_pred             hhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhc--CCccc--------------h
Q 007426          129 HIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALE--EKSTQ--------------T  192 (604)
Q Consensus       129 ~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~--~ks~q--------------t  192 (604)
                      +++...++-|+-.|.+.-.+.-.--  -|-+-+|.+.  +.|+- =+++=||..|-=.  ..+.+              +
T Consensus       291 ~~L~p~l~kliPvLl~~M~Ysd~D~--~LL~~~eeD~--~vpDr-eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~  365 (885)
T KOG2023|consen  291 EVLQPYLDKLIPVLLSGMVYSDDDI--ILLKNNEEDE--SVPDR-EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA  365 (885)
T ss_pred             HHHHHHHHHHHHHHHccCccccccH--HHhcCccccc--cCCch-hhhccchhhhchhccCccccccccccccccccccc
Confidence            4455555556666655433321111  1222222211  12221 1234465433111  01100              0


Q ss_pred             hhHHHH-HHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhcc
Q 007426          193 NSHMGL-VMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQ  271 (604)
Q Consensus       193 kAhl~L-V~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cR  271 (604)
                      -.--.| .+|.+.. .......|..++..++..|++.+.+++|-.|-|++-||..||...- ..+-.++..+|-.|=+|=
T Consensus       366 ~~dWNLRkCSAAaL-DVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L  443 (885)
T KOG2023|consen  366 FSDWNLRKCSAAAL-DVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLL  443 (885)
T ss_pred             cccccHhhccHHHH-HHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHh
Confidence            000001 0111111 1112457888999999999999999999999999999999997664 456678899999999999


Q ss_pred             CCCccchhHHHHHHH
Q 007426          272 SDQMAYVKGASLEAL  286 (604)
Q Consensus       272 fDKVk~VR~am~eAL  286 (604)
                      +||-+.||.-..=+|
T Consensus       444 ~DKkplVRsITCWTL  458 (885)
T KOG2023|consen  444 DDKKPLVRSITCWTL  458 (885)
T ss_pred             ccCccceeeeeeeeH
Confidence            999999997544333

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.91  E-value=0.33  Score=55.23  Aligned_cols=232  Identities=17%  Similarity=0.179  Sum_probs=163.1

Q ss_pred             CCChHHHHHHhhh-cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCC-CCCchhhHHHHHHHHHHHhCCCCccc
Q 007426            4 CLSPILRQELANL-DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKEN-GSVSGEYTISLYEVLARVHGANIVPQ   81 (604)
Q Consensus         4 ~lsp~~rqeL~KL-s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~-~s~vRke~I~Lle~LArvHG~~iaPh   81 (604)
                      |+-|++=.-|.+. +++..-|+.|++..+.+.+.+++-+++.||--+..+-.. +=..+..++.|++.++-.-...+.-.
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~  292 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC  292 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence            4556666778888 666778999999999999999998876666555444111 22468899999999998888889999


Q ss_pred             HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHh
Q 007426           82 IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALV  161 (604)
Q Consensus        82 L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlV  161 (604)
                      ++.|+=-++..|-|+.-  -||.|=-+++-.+.+.+..|         -|..+..=|.|||..-...+.    -|+..+.
T Consensus       293 lp~iiP~lsevl~DT~~--evr~a~~~~l~~~~svidN~---------dI~~~ip~Lld~l~dp~~~~~----e~~~~L~  357 (569)
T KOG1242|consen  293 LPDLIPVLSEVLWDTKP--EVRKAGIETLLKFGSVIDNP---------DIQKIIPTLLDALADPSCYTP----ECLDSLG  357 (569)
T ss_pred             HhHhhHHHHHHHccCCH--HHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHhcCcccchH----HHHHhhc
Confidence            99999999999999873  47876555555555443212         257789999999998773321    1222222


Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhh--hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426          162 DSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHN--ALIVEAYARLLIQSGLRILNAGPGEANSQKRL  238 (604)
Q Consensus       162 Es~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n--~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RK  238 (604)
                      ..+--.+...+.+.-|-|-+...|.+.++-++ .-...++=+.+..  +.-+.+|...|++.....+.+    -+-..|-
T Consensus       358 ~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d----~~PEvR~  433 (569)
T KOG1242|consen  358 ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD----AVPEVRA  433 (569)
T ss_pred             ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC----CChhHHH
Confidence            22211122234455677777778888887776 3333344334444  667788999999998888884    3889999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 007426          239 LAIQMLNFLMKSLDPR  254 (604)
Q Consensus       239 AAAeaL~~la~~~d~~  254 (604)
                      =|+-+|+.+.+-++..
T Consensus       434 vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  434 VAARALGALLERLGEV  449 (569)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999988766543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=95.77  E-value=0.89  Score=50.41  Aligned_cols=223  Identities=14%  Similarity=0.260  Sum_probs=133.2

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI   78 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i   78 (604)
                      |.+.+-|.. . +..-++.|++.|.+++++        .+.+-+|..+.||.+++.   .+.+.++.++..++....   
T Consensus        80 ~~L~~gL~h-~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~---~Va~~A~~~L~~l~~~~~---  151 (503)
T PF10508_consen   80 PFLQRGLTH-P-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL---SVAKAAIKALKKLASHPE---  151 (503)
T ss_pred             HHHHHHhcC-C-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH---HHHHHHHHHHHHHhCCch---
Confidence            444445543 3 677788888888887653        257779999999987765   389999999999997443   


Q ss_pred             cccHHHH-----HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh--hhchhHHhhhcccc-hhh
Q 007426           79 VPQIDSI-----MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS--LCKPLSDSLLGSQE-SLT  150 (604)
Q Consensus        79 aPhL~KI-----mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s--l~KPL~EaL~~qqe-~vQ  150 (604)
                        .+..+     +..+..-+..+++ . +|--+-+++..++..-.       +....+..  |...|...|.. .+ -+|
T Consensus       152 --~~~~l~~~~~~~~L~~l~~~~~~-~-vR~Rv~el~v~i~~~S~-------~~~~~~~~sgll~~ll~eL~~-dDiLvq  219 (503)
T PF10508_consen  152 --GLEQLFDSNLLSKLKSLMSQSSD-I-VRCRVYELLVEIASHSP-------EAAEAVVNSGLLDLLLKELDS-DDILVQ  219 (503)
T ss_pred             --hHHHHhCcchHHHHHHHHhccCH-H-HHHHHHHHHHHHHhcCH-------HHHHHHHhccHHHHHHHHhcC-ccHHHH
Confidence              22222     4555554444343 2 46555566666664311       11122222  56666666666 44 469


Q ss_pred             HHHHHHHHHHhccCCCCCCCHHHHHH-HHHHHHHhhcC----Cccchh---hHHHHHHHHHHhh-hhHHHHhHHHHHHHH
Q 007426          151 AGAALCLKALVDSDNWRFASDEMVNK-VCQNVAGALEE----KSTQTN---SHMGLVMALAKHN-ALIVEAYARLLIQSG  221 (604)
Q Consensus       151 sGAALCLAAlVEs~nwr~Ap~elv~r-lc~Rv~kaL~~----ks~qtk---Ahl~LV~ALs~~n-~~iiea~g~~Ll~S~  221 (604)
                      .-+.-+|..+.+...   .-.=+++. +.++++..|.+    +-+.+.   +-|-..+.++.+- ..+++.| ..++...
T Consensus       220 lnalell~~La~~~~---g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l  295 (503)
T PF10508_consen  220 LNALELLSELAETPH---GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERL  295 (503)
T ss_pred             HHHHHHHHHHHcChh---HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHH
Confidence            999999999999522   11212221 45555555543    412221   2233333444432 2233333 2344555


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchh
Q 007426          222 LRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIF  257 (604)
Q Consensus       222 l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~  257 (604)
                      .++++    +.|-..|-+|.++|..|....++..+-
T Consensus       296 ~~~~~----s~d~~~~~~A~dtlg~igst~~G~~~L  327 (503)
T PF10508_consen  296 FSMLE----SQDPTIREVAFDTLGQIGSTVEGKQLL  327 (503)
T ss_pred             HHHhC----CCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence            55555    899999999999999999777654433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.59  E-value=0.018  Score=51.09  Aligned_cols=79  Identities=18%  Similarity=0.279  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhhcCCC-------ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426           23 RKSAMKALKSYVKDLDSK-------AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS   95 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~d-------tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD   95 (604)
                      |+-|+-.|-+++-.|..+       -||+-|.|+.|.+.   -||-++..-|-.++.+.++.+.||+..|...+.|.+.|
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~---rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDS---RVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            455556666665555432       36777777776554   48999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHH
Q 007426           96 SAGSFPLQQAC  106 (604)
Q Consensus        96 sdSS~~vR~AC  106 (604)
                      ++.+  ||.||
T Consensus        80 ~d~~--Vr~~a   88 (97)
T PF12755_consen   80 PDEN--VRSAA   88 (97)
T ss_pred             Cchh--HHHHH
Confidence            9976  47766

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.54  E-value=0.059  Score=61.82  Aligned_cols=234  Identities=13%  Similarity=0.135  Sum_probs=135.0

Q ss_pred             HHHHHHhhhcCCch--hHHHHHHHHHHHHhhcCCCC-----hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426            8 ILRQELANLDKDAD--SRKSAMKALKSYVKDLDSKA-----IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP   80 (604)
Q Consensus         8 ~~rqeL~KLs~DRD--T~~iA~~eLesiak~Ld~dt-----lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP   80 (604)
                      .++.-|+.++ |.-  -|++++....+++-.|---.     .-.++..|+.+-..++..-+-.+--|+++--+-+-.--|
T Consensus       522 v~~kil~~~~-De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp  600 (975)
T COG5181         522 VSRKILEYYS-DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP  600 (975)
T ss_pred             HHHHHHhhcc-CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence            4556667776 543  35666666666666552111     223333333331122212222233344555555666779


Q ss_pred             cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chh--hHHHHHHH
Q 007426           81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESL--TAGAALCL  157 (604)
Q Consensus        81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~v--QsGAALCL  157 (604)
                      |++.|||+|+++|++..  ..+|.--+|.++.|+-.+..  ..|   .+.+.-+=-=|.|.|++.- |.+  -.||--|+
T Consensus       601 ~l~~ivStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~--c~e---~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I  673 (975)
T COG5181         601 HLSMIVSTILKLLRSKP--PDVRIRAADLMGSLAKVLKA--CGE---TKELAKLGNILYENLGEDYPEVLGSILKAICSI  673 (975)
T ss_pred             chHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHh--cch---HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHH
Confidence            99999999999997764  23798889999999855431  111   1233444456889999876 444  56777788


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhh-HHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426          158 KALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNS-HMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQK  236 (604)
Q Consensus       158 AAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkA-hl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~  236 (604)
                      -..+.-..-++   + .+.++|++...|++++-+-.+ -+.||+-+....+.-+  +.+.-++---+.++ .+++-+=..
T Consensus       674 ~sv~~~~~mqp---P-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi--~~rEWMRIcfeLvd-~Lks~nKei  746 (975)
T COG5181         674 YSVHRFRSMQP---P-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI--GVREWMRICFELVD-SLKSWNKEI  746 (975)
T ss_pred             hhhhcccccCC---c-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC--CHHHHHHHHHHHHH-HHHHhhHHH
Confidence            88888765331   1 578899999999998865542 4445544444433321  22222222222222 222444467


Q ss_pred             HHHHHHHHHHHHhhcCCCch
Q 007426          237 RLLAIQMLNFLMKSLDPRSI  256 (604)
Q Consensus       237 RKAAAeaL~~la~~~d~~~L  256 (604)
                      |.+|-+.+..|....++..+
T Consensus       747 RR~A~~tfG~Is~aiGPqdv  766 (975)
T COG5181         747 RRNATETFGCISRAIGPQDV  766 (975)
T ss_pred             HHhhhhhhhhHHhhcCHHHH
Confidence            77777777777766665433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.28  E-value=0.2  Score=44.55  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCC
Q 007426          194 SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSD  273 (604)
Q Consensus       194 Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfD  273 (604)
                      ++++|. +++...+..++.|...+++-.+.++.    ..||..|.+|.|+|.-|++... ..+-.+++.+..+|=..=.|
T Consensus         6 gli~La-a~ai~l~~~~~~~l~~Il~pVL~~~~----D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    6 GLIGLA-AVAIALGKDISKYLDEILPPVLKCFD----DQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLSAD   79 (97)
T ss_pred             HHHHHH-HHHHHchHhHHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence            344444 33444455579999999999999999    6899999999999999998885 45666889999999999999


Q ss_pred             CccchhHHHHHHHHHHH
Q 007426          274 QMAYVKGASLEALQTAK  290 (604)
Q Consensus       274 KVk~VR~am~eALq~wK  290 (604)
                      -=+-||.++.---++-|
T Consensus        80 ~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   80 PDENVRSAAELLDRLLK   96 (97)
T ss_pred             CchhHHHHHHHHHHHhc
Confidence            99999999865544443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.22  E-value=0.86  Score=48.75  Aligned_cols=242  Identities=15%  Similarity=0.186  Sum_probs=132.3

Q ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHH
Q 007426            9 LRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMT   87 (604)
Q Consensus         9 ~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KIms   87 (604)
                      ++.+|+  +.|+--+..|++-|-.+.   +++.++.++..|..- .++.+.|||.++--+-.+.+..++.+-+.   ++.
T Consensus        84 l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~  155 (526)
T PF01602_consen   84 LQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIP  155 (526)
T ss_dssp             HHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHH
T ss_pred             HHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHH
Confidence            344444  235556677777777765   555566555554443 23335889988877777777766654333   455


Q ss_pred             HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      .+.+.|.|.+-  .|+.+...++..+ ++ . +    +.....+..+.+-|...|.....-+|.-..=+|......    
T Consensus       156 ~l~~lL~d~~~--~V~~~a~~~l~~i-~~-~-~----~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~----  222 (526)
T PF01602_consen  156 KLKQLLSDKDP--SVVSAALSLLSEI-KC-N-D----DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM----  222 (526)
T ss_dssp             HHHHHTTHSSH--HHHHHHHHHHHHH-HC-T-H----HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS----
T ss_pred             HHhhhccCCcc--hhHHHHHHHHHHH-cc-C-c----chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC----
Confidence            56666677762  2444444555555 11 1 0    000023333333333333333344565555555544332    


Q ss_pred             CCCHHHH--HHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426          168 FASDEMV--NKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLN  245 (604)
Q Consensus       168 ~Ap~elv--~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~  245 (604)
                        ..+..  .++...+...|.+.+  ..-.+..+..+..+.+...  ....+++....+|.    +.|+..|..|.++|.
T Consensus       223 --~~~~~~~~~~i~~l~~~l~s~~--~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~----s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  223 --EPEDADKNRIIEPLLNLLQSSS--PSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLS----SSDPNVRYIALDSLS  292 (526)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHT----SSSHHHHHHHHHHHH
T ss_pred             --ChhhhhHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhh----cccchhehhHHHHHH
Confidence              33444  567777777777322  1124555555555443221  33445666677777    799999999999999


Q ss_pred             HHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426          246 FLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       246 ~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL  286 (604)
                      .|+..- +..+. +..-.   ++.+++|.=..||.-+.+.|
T Consensus       293 ~l~~~~-~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL  328 (526)
T PF01602_consen  293 QLAQSN-PPAVF-NQSLI---LFFLLYDDDPSIRKKALDLL  328 (526)
T ss_dssp             HHCCHC-HHHHG-THHHH---HHHHHCSSSHHHHHHHHHHH
T ss_pred             Hhhccc-chhhh-hhhhh---hheecCCCChhHHHHHHHHH
Confidence            987443 22333 32333   44566666677777655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=94.90  E-value=0.0063  Score=46.96  Aligned_cols=54  Identities=9%  Similarity=0.087  Sum_probs=47.4

Q ss_pred             CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q 007426           58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAI  113 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~AL  113 (604)
                      .+|+.++..|+.++...+..+.||++++|..++..|.|++.  .||.++..+++.|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence            47999999999999999999999999999999999999886  4698887777644

...

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.81  E-value=1.2  Score=42.51  Aligned_cols=109  Identities=16%  Similarity=0.185  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhh-hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 007426          170 SDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHN-ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFL  247 (604)
Q Consensus       170 p~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n-~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~l  247 (604)
                      ....++++..|+.++|++++...+ +=+.|+.++.+.+ +.++..++...++..+.+|+.   .++-...++|..+|..|
T Consensus        19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l   95 (165)
T PF08167_consen   19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRL   95 (165)
T ss_pred             CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence            467899999999999999877776 6677888889998 888878888888999999996   67779999999999999


Q ss_pred             HhhcCCC----------chhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          248 MKSLDPR----------SIFSELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       248 a~~~d~~----------~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      +....+.          .|..++..+|+.++.      ..+.+.+.++|.
T Consensus        96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~------~~~~~~~l~~L~  139 (165)
T PF08167_consen   96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD------SSCPETALDALA  139 (165)
T ss_pred             HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence            8654321          133344555665554      444444444443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=94.79  E-value=1.3  Score=57.00  Aligned_cols=207  Identities=13%  Similarity=0.195  Sum_probs=126.1

Q ss_pred             CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHHHH
Q 007426           19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIMTT   88 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KImst   88 (604)
                      +..-+..|+..|..++..-        +++.||+|+..|...+   ..++++++..+.-||. |...+--.+.  ..|-.
T Consensus       459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~---~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIpp  534 (2102)
T PLN03200        459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS---QKAKEDSATVLWNLCC-HSEDIRACVESAGAVPA  534 (2102)
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHH
Confidence            4566777888887777532        5889999999997443   3589999999999987 5322222221  13345


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF  168 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~  168 (604)
                      ++.-|.+.+  ...+.-.+.++..|+... |       .     ..++||.+.|.++...++.=+.-.|..++....   
T Consensus       535 LV~LL~sgd--~~~q~~Aa~AL~nLi~~~-d-------~-----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~---  596 (2102)
T PLN03200        535 LLWLLKNGG--PKGQEIAAKTLTKLVRTA-D-------A-----ATISQLTALLLGDLPESKVHVLDVLGHVLSVAS---  596 (2102)
T ss_pred             HHHHHhCCC--HHHHHHHHHHHHHHHhcc-c-------h-----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc---
Confidence            677777664  345655555555555431 1       1     134888888888776554444444444444321   


Q ss_pred             CCHHHH------HHHHHHHHHhhcCCccchhhH-HHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426          169 ASDEMV------NKVCQNVAGALEEKSTQTNSH-MGLVMALAKHNALIVEAY-ARLLIQSGLRILNAGPGEANSQKRLLA  240 (604)
Q Consensus       169 Ap~elv------~rlc~Rv~kaL~~ks~qtkAh-l~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~~~~ssDWq~RKAA  240 (604)
                       -.+.+      +...+.+..+|+..+...+.+ ...+..+..-++.++.+- .+-.++-.+..|.    +++-..||.|
T Consensus       597 -~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs----s~~~~v~keA  671 (2102)
T PLN03200        597 -LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT----NNTEAVATQS  671 (2102)
T ss_pred             -hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh----cCChHHHHHH
Confidence             11222      346788999999877666522 223333333333322221 1123667778888    6788899999


Q ss_pred             HHHHHHHHhhcC
Q 007426          241 IQMLNFLMKSLD  252 (604)
Q Consensus       241 AeaL~~la~~~d  252 (604)
                      |.+|..++....
T Consensus       672 A~AL~nL~~~~~  683 (2102)
T PLN03200        672 ARALAALSRSIK  683 (2102)
T ss_pred             HHHHHHHHhCCC
Confidence            999999885443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=94.62  E-value=0.2  Score=41.82  Aligned_cols=109  Identities=17%  Similarity=0.051  Sum_probs=74.7

Q ss_pred             hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHH
Q 007426          134 LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVE  211 (604)
Q Consensus       134 l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iie  211 (604)
                      ++.+|.+.|...+..+..+|+.||+.+.....  .....++. .+.+.+.++|.+++.... .=+.+++.|+...+....
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            67788888888877899999999999988621  11224444 678889999998654443 334445555554433222


Q ss_pred             HhH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426          212 AYA-RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM  248 (604)
Q Consensus       212 a~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la  248 (604)
                      ... ..+++..+++|+    ..+...|+.|..+|..|.
T Consensus        86 ~~~~~g~l~~l~~~l~----~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLD----SSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHh----cCCHHHHHHHHHHHHHhh
Confidence            222 226788888888    568999999999998764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=0.42  Score=55.51  Aligned_cols=249  Identities=17%  Similarity=0.228  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHhhhccCCC-CCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChh
Q 007426           23 RKSAMKALKSYVKDLDSKAIPLFLAQVSETKE-NGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFP  101 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~-~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~  101 (604)
                      |+--++.|+=++-=+-.+-+|..|-=|-++-. ..=.+|+-.|=-|+..|+=-=+-++||||-++..++.-|.|--  ..
T Consensus       372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk--pl  449 (885)
T KOG2023|consen  372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK--PL  449 (885)
T ss_pred             hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc--cc
Confidence            55555566655554444444444433333311 1135788888888888775556699999999999999998875  24


Q ss_pred             hHH-HHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH---HH
Q 007426          102 LQQ-ACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN---KV  177 (604)
Q Consensus       102 vR~-AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~---rl  177 (604)
                      ||. .|    =+|+||..=  -.++...+-+.-++.+|.-.|+..||-||=.|-...|-+.|.     |-.++|.   .+
T Consensus       450 VRsITC----WTLsRys~w--v~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~-----A~~eLVp~l~~I  518 (885)
T KOG2023|consen  450 VRSITC----WTLSRYSKW--VVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE-----AGEELVPYLEYI  518 (885)
T ss_pred             eeeeee----eeHhhhhhh--HhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-----ccchhHHHHHHH
Confidence            675 55    367887651  112223455666777788888999999998777777777775     4566655   56


Q ss_pred             HHHHHHhhcCCccchh---hHHHHHHHHHHhhhhH--HHHhHHHHH------------------------HHHHHHhcCC
Q 007426          178 CQNVAGALEEKSTQTN---SHMGLVMALAKHNALI--VEAYARLLI------------------------QSGLRILNAG  228 (604)
Q Consensus       178 c~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~~i--iea~g~~Ll------------------------~S~l~~L~~~  228 (604)
                      +..+.++++  -.|.|   -+.-+||.|+.-.|..  -.+|-.-|+                        .|+...|+.+
T Consensus       519 L~~l~~af~--kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~g  596 (885)
T KOG2023|consen  519 LDQLVFAFG--KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVG  596 (885)
T ss_pred             HHHHHHHHH--HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcc
Confidence            777777777  34444   3556677766544322  123333111                        1222233333


Q ss_pred             CCCCCHHH--------HH-----------------------HHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCc
Q 007426          229 PGEANSQK--------RL-----------------------LAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQM  275 (604)
Q Consensus       229 ~~ssDWq~--------RK-----------------------AAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKV  275 (604)
                      ..-.-|-.        +|                       -|-+.|.-|+..++ .-+.+-.  +.+++.|=.|=-|.|
T Consensus       597 F~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg-~~ie~Lva~snl~~lll~C~~D~~  675 (885)
T KOG2023|consen  597 FLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG-SHIEPLVAQSNLLDLLLQCLQDEV  675 (885)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh-hchHHHhhhccHHHHHHHHhccCC
Confidence            32223310        11                       12334444444443 2233322  347789999999999


Q ss_pred             cchhHHHHHHHH
Q 007426          276 AYVKGASLEALQ  287 (604)
Q Consensus       276 k~VR~am~eALq  287 (604)
                      +.||.+++--|-
T Consensus       676 peVRQS~FALLG  687 (885)
T KOG2023|consen  676 PEVRQSAFALLG  687 (885)
T ss_pred             hHHHHHHHHHHH
Confidence            999999987653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.29  E-value=1.4  Score=47.49  Aligned_cols=191  Identities=15%  Similarity=0.142  Sum_probs=102.0

Q ss_pred             hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC--CCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC
Q 007426           42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHG--ANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGID  119 (604)
Q Consensus        42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG--~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id  119 (604)
                      ||.||+.|-|++.......+.++..++.+|..+.  ..++|   +|+..+-..+....++-..+..|.-..-.+..+..+
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~---~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI---RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH---HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            6899999998877654567888888888887664  22333   333333333332222212334444444444444333


Q ss_pred             CCCccccchhhHHh-hhchhHHhhhcccc--------hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhc----
Q 007426          120 PTTPEDKKRHIIHS-LCKPLSDSLLGSQE--------SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALE----  186 (604)
Q Consensus       120 p~~~~~~~~~ii~s-l~KPL~EaL~~qqe--------~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~----  186 (604)
                      ..+  .+...-+.. ++..|++.......        .+..-+-+| ..+|.     +-+.+.-++++.++..++-    
T Consensus        78 ~~~--~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~-~~iv~-----~l~~~~q~~~~~~~~~lf~~~~~  149 (415)
T PF12460_consen   78 KQF--EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLI-NLIVR-----SLSPEKQQEILDELYSLFLSPKS  149 (415)
T ss_pred             ccc--chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHH-HHHHH-----hCCHHHHHHHHHHHHHHHccccc
Confidence            301  111222222 55566665544321        122222222 22233     3577777888888888775    


Q ss_pred             ------C------CccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426          187 ------E------KSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM  248 (604)
Q Consensus       187 ------~------ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la  248 (604)
                            +      ...++...+  -+.|+.+.+.+.-+....+++..+....   ...++..|.++.++|..|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~--~~il~~l~~~~~~~~~~~ll~~l~~~~~---~~~~~~~~~~~~~~la~Lv  218 (415)
T PF12460_consen  150 FSPFQPSSSTISEQQSRLVILF--SAILCSLRKDVSLPDLEELLQSLLNLAL---SSEDEFSRLAALQLLASLV  218 (415)
T ss_pred             cCCCCccccccccccccHHHHH--HHHHHcCCcccCccCHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHH
Confidence                  1      122222222  2234455555443344456666666554   3677999999999999887

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PTZ00429 beta-adaptin; Provisional

Probab=94.05  E-value=11  Score=44.66  Aligned_cols=258  Identities=15%  Similarity=0.124  Sum_probs=139.4

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChh--HHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIP--LFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID   83 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP--~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~   83 (604)
                      +.+++.|.  ++++--|+.|+-.+-++-+ ++++.++  .|+..|.+- .++.+-|--.||.+|-.+...-++.+ -...
T Consensus       143 ~~lkk~L~--D~~pYVRKtAalai~Kly~-~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~  218 (746)
T PTZ00429        143 EPLRRAVA--DPDPYVRKTAAMGLGKLFH-DDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSN  218 (746)
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHHHh-hCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHH
Confidence            34455553  3345556666666666544 4554433  233333332 33445578888888887765444322 2234


Q ss_pred             HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           84 SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        84 KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      +++..++.+|.+-+-     =+-...+-.|++|.  |.. .++.    ..++.=+...|-+.|..|..+|+=|+-.+...
T Consensus       219 ~~~~~Ll~~L~e~~E-----W~Qi~IL~lL~~y~--P~~-~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        219 EWVNRLVYHLPECNE-----WGQLYILELLAAQR--PSD-KESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHHHHHHHHhhcCCh-----HHHHHHHHHHHhcC--CCC-cHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            444555555554431     13335666667663  322 1222    23444455557777888888888887776543


Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---hc--CCccchhhHHHHHHHHHHhhhhHHHHhHHHH-----------------H---
Q 007426          164 DNWRFASDEMVNKVCQNVAGA---LE--EKSTQTNSHMGLVMALAKHNALIVEAYARLL-----------------I---  218 (604)
Q Consensus       164 ~nwr~Ap~elv~rlc~Rv~ka---L~--~ks~qtkAhl~LV~ALs~~n~~iiea~g~~L-----------------l---  218 (604)
                           -+.+++..++.|+.+.   |.  ++..|..++-. +-.+++..+.++..+...+                 |   
T Consensus       287 -----~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L  360 (746)
T PTZ00429        287 -----CSQELIERCTVRVNTALLTLSRRDAETQYIVCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL  360 (746)
T ss_pred             -----CCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence                 1346777777776542   22  24455544322 2344555666666665421                 0   


Q ss_pred             ------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHh
Q 007426          219 ------QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRI  292 (604)
Q Consensus       219 ------~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~I  292 (604)
                            .-++.-|.+-+.+.|-..+..|+.+|+.++...     ..-..+|+..|-..=-++...|    .|++..-|.|
T Consensus       361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~~v----~e~i~vik~I  431 (746)
T PTZ00429        361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-----DSVAPDCANLLLQIVDRRPELL----PQVVTAAKDI  431 (746)
T ss_pred             cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCchhH----HHHHHHHHHH
Confidence                  112222333333568899999999999998544     3345677777655444555444    3556666666


Q ss_pred             hhc
Q 007426          293 AAE  295 (604)
Q Consensus       293 a~~  295 (604)
                      -.+
T Consensus       432 lrk  434 (746)
T PTZ00429        432 VRK  434 (746)
T ss_pred             HHH
Confidence            443

>PF05536 Neurochondrin: Neurochondrin

Probab=93.86  E-value=3  Score=47.20  Aligned_cols=240  Identities=15%  Similarity=0.208  Sum_probs=143.0

Q ss_pred             CChHHHHHHhhhcCCchhHHH-HHHHHHHHHhhcCCCC--h--------hHHHhhhccCCCCC--C---CchhhHHHHHH
Q 007426            5 LSPILRQELANLDKDADSRKS-AMKALKSYVKDLDSKA--I--------PLFLAQVSETKENG--S---VSGEYTISLYE   68 (604)
Q Consensus         5 lsp~~rqeL~KLs~DRDT~~i-A~~eLesiak~Ld~dt--l--------P~FLscV~dtd~~~--s---~vRke~I~Lle   68 (604)
                      -++.+.+++.=|..-+||++. |+-=+.+.++.-|.+.  .        |.||.++.-|....  .   .-+.=++.++.
T Consensus         3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            357788888888766799998 4555555555433211  1        68999999884321  1   22455677888


Q ss_pred             HHHHHhCCCCc--ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcc
Q 007426           69 VLARVHGANIV--PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGS  145 (604)
Q Consensus        69 ~LArvHG~~ia--PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~q  145 (604)
                      .+|+  ...++  |.+-..+-.++..|+.+++ ..+-+=|-....+++.+       +++....+. .-+.+|++++..+
T Consensus        83 ~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~-------~~G~~aLl~~g~v~~L~ei~~~~  152 (543)
T PF05536_consen   83 AFCR--DPELASSPQMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASS-------PEGAKALLESGAVPALCEIIPNQ  152 (543)
T ss_pred             HHcC--ChhhhcCHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcC-------cHhHHHHHhcCCHHHHHHHHHhC
Confidence            8877  23333  3333334445555655544 11345666666666622       233333333 2677999999996


Q ss_pred             cchhhHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhH--HHHh----HHH
Q 007426          146 QESLTAGAALCLKALVDSD--NWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALI--VEAY----ARL  216 (604)
Q Consensus       146 qe~vQsGAALCLAAlVEs~--nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~i--iea~----g~~  216 (604)
                      .........+.+..+....  .|. .....+..+.++++..+...+...| -.+.+..++...-+..  ....    ...
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~  231 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSD  231 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHH
Confidence            6666666666665555443  565 3334556888888888886666655 4566665555444211  1111    123


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh
Q 007426          217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS  258 (604)
Q Consensus       217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s  258 (604)
                      +...+..+|..   --.-+.|-+|......++...+.+.|..
T Consensus       232 l~~gl~~iL~s---r~~~~~R~~al~Laa~Ll~~~G~~wl~~  270 (543)
T PF05536_consen  232 LRKGLRDILQS---RLTPSQRDPALNLAASLLDLLGPEWLFA  270 (543)
T ss_pred             HHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhChHhhcC
Confidence            55556677773   2335789999998888887777655543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=93.41  E-value=5.4  Score=44.40  Aligned_cols=217  Identities=15%  Similarity=0.212  Sum_probs=137.6

Q ss_pred             HHHHhhhcCCchhHHHHHHHHHHHHhhcC---CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHH
Q 007426           10 RQELANLDKDADSRKSAMKALKSYVKDLD---SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSI   85 (604)
Q Consensus        10 rqeL~KLs~DRDT~~iA~~eLesiak~Ld---~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KI   85 (604)
                      ...|.+|. ..+.+--++.+|+..+..-.   .-..+..+.|+.+.+.   ..=..|..+|..+-..+ ++.+   ++++
T Consensus         6 ~~~l~~l~-~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~~---e~v~~~~~iL~~~l~~~~~~~l---~~~~   78 (503)
T PF10508_consen    6 NELLEELS-SKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTSNR---EQVELICDILKRLLSALSPDSL---LPQY   78 (503)
T ss_pred             HHHHHHHh-cccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcCh---HHHHHHHHHHHHHHhccCHHHH---HHHH
Confidence            34566676 66777777888877555433   2223557777774422   11244555555444433 4444   8899


Q ss_pred             HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH--HhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII--HSLCKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii--~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      +..+.+-|..++.  .||.-|.+.++-+++.-       ++.-.++  ..+..-+..+|......|+.-|+-.|+.+...
T Consensus        79 ~~~L~~gL~h~~~--~Vr~l~l~~l~~~~~~~-------~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~  149 (503)
T PF10508_consen   79 QPFLQRGLTHPSP--KVRRLALKQLGRIARHS-------EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH  149 (503)
T ss_pred             HHHHHHHhcCCCH--HHHHHHHHHHHHHhcCC-------HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence            9999999987764  46887777766655331       1111111  23667788999999999999999999999875


Q ss_pred             CCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426          164 DNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLA  240 (604)
Q Consensus       164 ~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAA  240 (604)
                      ..   .-..++. .+...+..++...+-..+ --+.++.-++++.+...+.... .++..++..|+    ++|==.++.|
T Consensus       150 ~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~----~dDiLvqlna  222 (503)
T PF10508_consen  150 PE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD----SDDILVQLNA  222 (503)
T ss_pred             ch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc----CccHHHHHHH
Confidence            21   1111211 236667777776333222 3556677777777666443332 27788888888    7899999999


Q ss_pred             HHHHHHHHh
Q 007426          241 IQMLNFLMK  249 (604)
Q Consensus       241 AeaL~~la~  249 (604)
                      .|+|..|+.
T Consensus       223 lell~~La~  231 (503)
T PF10508_consen  223 LELLSELAE  231 (503)
T ss_pred             HHHHHHHHc
Confidence            999999986

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=92.25  E-value=0.86  Score=37.13  Aligned_cols=83  Identities=20%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             HHHHhh-cCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh
Q 007426          180 NVAGAL-EEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS  258 (604)
Q Consensus       180 Rv~kaL-~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s  258 (604)
                      .+.+.| ++++...+  ..++.+|.+..       ....++..++.|+    .+||..|.+|+.+|..+-          
T Consensus         3 ~L~~~l~~~~~~~vr--~~a~~~L~~~~-------~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVR--AEAARALGELG-------DPEAIPALIELLK----DEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHTSSSHHHH--HHHHHHHHCCT-------HHHHHHHHHHHHT----SSSHHHHHHHHHHHHCCH----------
T ss_pred             HHHHHHhcCCCHHHH--HHHHHHHHHcC-------CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhC----------
Confidence            455666 55544433  33444444442       2345777788887    799999999999999752          


Q ss_pred             hHHHHHHHHH-hccCCCccchhHHHHHHH
Q 007426          259 ELELIIEGME-NCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       259 e~~S~I~~LE-~cRfDKVk~VR~am~eAL  286 (604)
                       -...+..|. ..+.|+-..||.++.+||
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence             122333333 366778888999999987

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.23  E-value=0.3  Score=34.47  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=25.5

Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426          217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS  250 (604)
Q Consensus       217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~  250 (604)
                      |++..++.|+    ..+|..|.+|+++|..|+..
T Consensus         1 llp~l~~~l~----D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLN----DPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-----SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcC----CCCHHHHHHHHHHHHHHHhh
Confidence            4677888888    68999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.07  E-value=5.1  Score=46.55  Aligned_cols=254  Identities=15%  Similarity=0.191  Sum_probs=147.4

Q ss_pred             hHHHHHHHHHHHHh-hcCCCChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHhCCCCcc-----cHHHHHHHHHhhc
Q 007426           22 SRKSAMKALKSYVK-DLDSKAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVHGANIVP-----QIDSIMTTITKTL   93 (604)
Q Consensus        22 T~~iA~~eLesiak-~Ld~dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvHG~~iaP-----hL~KImstIVRRL   93 (604)
                      --++|..-|-.||+ .|....-|-|.--+-+.  ++.....+.+++-.++.    |-.+..|     .---|+-.||---
T Consensus       110 ~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy----~ces~~Pe~li~~sN~il~aiv~ga  185 (858)
T COG5215         110 FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY----HCESEAPEDLIQMSNVILFAIVMGA  185 (858)
T ss_pred             HHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH----HhhccCHHHHHHHhhHHHHHHHHhh
Confidence            34566667777776 34555566666555443  23223457777766554    5556666     2233444554433


Q ss_pred             cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc-----------
Q 007426           94 ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD-----------  162 (604)
Q Consensus        94 sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE-----------  162 (604)
                      ....-+-.||-|--++...--.++..--..|++-.-    |..-.+|+--+..+.+|..|=-||-+.+-           
T Consensus       186 ~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE  261 (858)
T COG5215         186 LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME  261 (858)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322246755443333211122212222333222    22223344444445555555555544321           


Q ss_pred             ------------cCC----------C--------------CCCC----------HHHHHHHHHHHHHhhcCCccch----
Q 007426          163 ------------SDN----------W--------------RFAS----------DEMVNKVCQNVAGALEEKSTQT----  192 (604)
Q Consensus       163 ------------s~n----------w--------------r~Ap----------~elv~rlc~Rv~kaL~~ks~qt----  192 (604)
                                  +.|          |              +++|          ...+.+++|.+.++|.+.+.-+    
T Consensus       262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd  341 (858)
T COG5215         262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD  341 (858)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence                        111          3              2333          1235679999999998744433    


Q ss_pred             -hhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhcc
Q 007426          193 -NSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQ  271 (604)
Q Consensus       193 -kAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cR  271 (604)
                       +-||... +-.++   -.+.-|..+++-.+.+....+.++||..|-||+-|+.++|..=+...+.......+..+|+--
T Consensus       342 Wn~smaA~-sCLql---faq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m  417 (858)
T COG5215         342 WNPSMAAS-SCLQL---FAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM  417 (858)
T ss_pred             cchhhhHH-HHHHH---HHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence             2455433 22222   224455667777888888888899999999999999999977666677767788899999999


Q ss_pred             CCCccchhHHHHHHHH
Q 007426          272 SDQMAYVKGASLEALQ  287 (604)
Q Consensus       272 fDKVk~VR~am~eALq  287 (604)
                      .|.+-.|.+..-.++-
T Consensus       418 ~D~~l~vk~ttAwc~g  433 (858)
T COG5215         418 SDSCLWVKSTTAWCFG  433 (858)
T ss_pred             ccceeehhhHHHHHHH
Confidence            9999999998877764

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.83  E-value=15  Score=41.94  Aligned_cols=261  Identities=16%  Similarity=0.156  Sum_probs=163.2

Q ss_pred             hhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc---cHHHHHHHHHh
Q 007426           15 NLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP---QIDSIMTTITK   91 (604)
Q Consensus        15 KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP---hL~KImstIVR   91 (604)
                      -|+ |.|++.+.+..|.+....--+-.++.-|.|+.+++...+  .++=|.=.+..|..-+..++|   -+...+-+.--
T Consensus       189 qls-~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~--~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~  265 (533)
T KOG2032|consen  189 QLS-DNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEK--ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLAN  265 (533)
T ss_pred             hcc-cCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhc--ccchHHHHHHHHHHhCcccccccccHHHHHHHHHH
Confidence            366 999999999999999888878789999999998877544  455566677788888888776   67777777778


Q ss_pred             hccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccC-CCCCCC
Q 007426           92 TLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSD-NWRFAS  170 (604)
Q Consensus        92 RLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~-nwr~Ap  170 (604)
                      +.+||+-++ =+.||.--+-..+- +  |.--.--+..++.++.+-|.|-+   ++.|+.-|=.||+.+++.. +|  +=
T Consensus       266 ka~dp~a~~-r~~a~r~L~~~as~-~--P~kv~th~~~~ldaii~gL~D~~---~~~V~leam~~Lt~v~~~~~~~--~l  336 (533)
T KOG2032|consen  266 KATDPSAKS-RGMACRGLGNTASG-A--PDKVRTHKTTQLDAIIRGLYDDL---NEEVQLEAMKCLTMVLEKASND--DL  336 (533)
T ss_pred             hccCchhHH-HHHHHHHHHHHhcc-C--cHHHHHhHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHhhhhc--ch
Confidence            888888643 24566554443331 1  11100112223444444444433   2789999999999999863 23  22


Q ss_pred             HHHHHHHHHHHHHhhcC--CccchhhHHHHHHHHHHhhhh------H--HHHhHHH------------------------
Q 007426          171 DEMVNKVCQNVAGALEE--KSTQTNSHMGLVMALAKHNAL------I--VEAYARL------------------------  216 (604)
Q Consensus       171 ~elv~rlc~Rv~kaL~~--ks~qtkAhl~LV~ALs~~n~~------i--iea~g~~------------------------  216 (604)
                      ...+-.+..|+-.++++  +.+++. -+.|.++|+++-+.      +  +-..+++                        
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~a-a~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~  415 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAA-AFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY  415 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhh-HHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence            23333556666666664  223333 33455666654321      0  0100000                        


Q ss_pred             ----------HHH--------------------------HHHHHhcC---CCCCCCH-HHHHHHHHHHHHHHhhcCCCch
Q 007426          217 ----------LIQ--------------------------SGLRILNA---GPGEANS-QKRLLAIQMLNFLMKSLDPRSI  256 (604)
Q Consensus       217 ----------Ll~--------------------------S~l~~L~~---~~~ssDW-q~RKAAAeaL~~la~~~d~~~L  256 (604)
                                +.+                          ..+-++.+   -+-++.| +.|-||--+-..+-.++.++ .
T Consensus       416 p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~-~  494 (533)
T KOG2032|consen  416 PNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRA-A  494 (533)
T ss_pred             chhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHH-H
Confidence                      001                          00111111   1235789 88988888877776666543 3


Q ss_pred             hhh--HHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          257 FSE--LELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       257 ~se--~~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                      .+.  ..-++..|-..++|--+.|++++-+|+++-
T Consensus       495 c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l  529 (533)
T KOG2032|consen  495 CSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL  529 (533)
T ss_pred             HHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence            333  356789999999999999999999999874

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.37  E-value=14  Score=42.12  Aligned_cols=263  Identities=21%  Similarity=0.225  Sum_probs=151.9

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI   78 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i   78 (604)
                      |++.+.|..=+  .|=+..|+=+|-.||.+        |+...+++.|..+...+.  -.-.+...-.|.-|||  |..=
T Consensus       155 p~fi~Ll~s~~--~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~--~~~lRn~tW~LsNlcr--gk~P  228 (514)
T KOG0166|consen  155 PIFIQLLSSPS--ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK--LSMLRNATWTLSNLCR--GKNP  228 (514)
T ss_pred             HHHHHHhcCCc--HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc--hHHHHHHHHHHHHHHc--CCCC
Confidence            44444444332  34444555555555432        378889999999986655  1246777788888887  3345


Q ss_pred             ccc---HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh-hhchhHHhhhcccchhhHHHH
Q 007426           79 VPQ---IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQESLTAGAA  154 (604)
Q Consensus        79 aPh---L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s-l~KPL~EaL~~qqe~vQsGAA  154 (604)
                      .|+   +..|+..+.+=|.+.|     -.-|+|++-||+ |+.|.+.  |.-..++.+ +|.=|.+.|++..-.++.-|=
T Consensus       229 ~P~~~~v~~iLp~L~~ll~~~D-----~~Vl~Da~WAls-yLsdg~n--e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL  300 (514)
T KOG0166|consen  229 SPPFDVVAPILPALLRLLHSTD-----EEVLTDACWALS-YLTDGSN--EKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL  300 (514)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHH-HHhcCCh--HHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence            555   5677888888888888     356677666665 7777433  333334433 666677777777666774332


Q ss_pred             HHHHHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCcc--chh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHh
Q 007426          155 LCLKALVDSDNWRFASDEMVN-----KVCQNVAGALEEKST--QTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRIL  225 (604)
Q Consensus       155 LCLAAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~--qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L  225 (604)
                      -++--.|-      ..++.-+     .+++-+..+|.+...  .-| |... +.=+...|..-+.+. -+.+++-.+.+|
T Consensus       301 RaiGNIvt------G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~-iSNItAG~~~qiqaVida~l~p~Li~~l  373 (514)
T KOG0166|consen  301 RAIGNIVT------GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT-ISNITAGNQEQIQAVIDANLIPVLINLL  373 (514)
T ss_pred             hhccceee------ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH-HHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence            23333222      2343222     356667777774211  122 2111 111111111111111 124788889999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhH--HHHHHHHHHHHhhhcCC
Q 007426          226 NAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKG--ASLEALQTAKRIAAENG  297 (604)
Q Consensus       226 ~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~--am~eALq~wK~Ia~~~g  297 (604)
                      +    +++.-+||-|+=||.-+....+++-|. ++  -.||+.|-..=  .++.+|-  .+.+||+.-.++..+.+
T Consensus       374 ~----~~ef~~rKEAawaIsN~ts~g~~~qi~-yLv~~giI~plcdlL--~~~D~~ii~v~Ld~l~nil~~~e~~~  442 (514)
T KOG0166|consen  374 Q----TAEFDIRKEAAWAISNLTSSGTPEQIK-YLVEQGIIKPLCDLL--TCPDVKIILVALDGLENILKVGEAEK  442 (514)
T ss_pred             h----ccchHHHHHHHHHHHhhcccCCHHHHH-HHHHcCCchhhhhcc--cCCChHHHHHHHHHHHHHHHHHHHhc
Confidence            9    789999999999999976555544333 33  33777776554  5555554  45666666666655543

>PTZ00429 beta-adaptin; Provisional

Probab=91.27  E-value=26  Score=41.55  Aligned_cols=156  Identities=14%  Similarity=0.175  Sum_probs=89.3

Q ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhhc--CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHH
Q 007426            9 LRQELANLDKDADSRKSAMKALKSYVKDL--DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIM   86 (604)
Q Consensus         9 ~rqeL~KLs~DRDT~~iA~~eLesiak~L--d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KIm   86 (604)
                      +|.+|+  +.|...++-|++   +++-..  --|.-+.|-..|--...++-..||-+-=.+...|..|.+.    .--.+
T Consensus        37 Lr~~L~--s~~~~~kk~alK---kvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaI  107 (746)
T PTZ00429         37 LQNDLN--GTDSYRKKAAVK---RIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAV  107 (746)
T ss_pred             HHHHHH--CCCHHHHHHHHH---HHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHH
Confidence            445553  224444444544   444333  3455555554444333333334554444444555555332    22347


Q ss_pred             HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426           87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW  166 (604)
Q Consensus        87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw  166 (604)
                      .++.|-|.|++-  .+|.-   ++.+|+.- ..        ..++..+..||-.+|....-.|---||+|++++..-+  
T Consensus       108 Ntl~KDl~d~Np--~IRaL---ALRtLs~I-r~--------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--  171 (746)
T PTZ00429        108 NTFLQDTTNSSP--VVRAL---AVRTMMCI-RV--------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--  171 (746)
T ss_pred             HHHHHHcCCCCH--HHHHH---HHHHHHcC-Cc--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--
Confidence            888898988872  23432   34444421 11        2466778999999999888899999999999998752  


Q ss_pred             CCCCHHHH--HHHHHHHHHhhcCCccchh
Q 007426          167 RFASDEMV--NKVCQNVAGALEEKSTQTN  193 (604)
Q Consensus       167 r~Ap~elv--~rlc~Rv~kaL~~ks~qtk  193 (604)
                         | +++  .++.+++.++|.+++...+
T Consensus       172 ---p-elv~~~~~~~~L~~LL~D~dp~Vv  196 (746)
T PTZ00429        172 ---M-QLFYQQDFKKDLVELLNDNNPVVA  196 (746)
T ss_pred             ---c-ccccccchHHHHHHHhcCCCccHH
Confidence               2 232  2456667777877654443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=90.58  E-value=2.2  Score=34.75  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             chhHHhh-hcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhH
Q 007426          136 KPLSDSL-LGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYA  214 (604)
Q Consensus       136 KPL~EaL-~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g  214 (604)
                      .+|++.| .+.+..+..-|+-||.   +     ....    ++.+.+..+|++++...  -..++.+|.+++       .
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~---~-----~~~~----~~~~~L~~~l~d~~~~v--r~~a~~aL~~i~-------~   60 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALG---E-----LGDP----EAIPALIELLKDEDPMV--RRAAARALGRIG-------D   60 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHH---C-----CTHH----HHHHHHHHHHTSSSHHH--HHHHHHHHHCCH-------H
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHH---H-----cCCH----hHHHHHHHHHcCCCHHH--HHHHHHHHHHhC-------C
Confidence            4688888 6666778988888888   2     1222    55677777888765433  345555666653       3


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426          215 RLLIQSGLRILNAGPGEANSQKRLLAIQMLN  245 (604)
Q Consensus       215 ~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~  245 (604)
                      ...++...+.|.+   +.+|..|.+|+++|.
T Consensus        61 ~~~~~~L~~~l~~---~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQD---DDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CCcHHHHHHHHhhcC
Confidence            3456777777874   356677999999984

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=88.92  E-value=1.9  Score=36.07  Aligned_cols=106  Identities=11%  Similarity=0.027  Sum_probs=60.9

Q ss_pred             HHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 007426          177 VCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPR  254 (604)
Q Consensus       177 lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~  254 (604)
                      +.+.+.+.|.+.+...+ .-+..++.++...+......-. ..++..+++|.    .+|...|..|+.+|..|+.... .
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~v~~~a~~~L~~l~~~~~-~   82 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEEVVKAALWALRNLAAGPE-D   82 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHHHHHHHHHHHHHHccCcH-H
Confidence            55667777776653332 2333344444443222222222 45778888888    5799999999999999874332 1


Q ss_pred             chhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          255 SIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       255 ~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      ...... ..++..|..+=.++-..||+.+..+|.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~  116 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS  116 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence            111111 235555555555555677777766654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=88.07  E-value=1.5  Score=39.98  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=60.6

Q ss_pred             hHHHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426           43 PLFLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI  118 (604)
Q Consensus        43 P~FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i  118 (604)
                      -.|=+.+.|.+...+ .-|+.+|+=++.+-+.+|..|.+.+||||+.+--.|..++    +|..|-++-..+-+++.
T Consensus        14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e----L~~~al~~W~~~i~~L~   86 (107)
T smart00802       14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE----LRSLALRCWHVLIKTLK   86 (107)
T ss_pred             HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhCC
Confidence            345566666653333 4499999999999999999999999999999999998887    79999999999998875

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=87.63  E-value=14  Score=37.86  Aligned_cols=107  Identities=18%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHH
Q 007426           26 AMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQA  105 (604)
Q Consensus        26 A~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~A  105 (604)
                      +..+++..+..+...+++..+..+.+.   +..+|..+...++.+          -....+..+.+.|.|.+.  .||..
T Consensus        29 ~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~--~vr~~   93 (335)
T COG1413          29 ALAELDDLILELAPEAADELLKLLEDE---DLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDP--RVRDA   93 (335)
T ss_pred             HHhccchhhcccchhhHHHHHHHHcCC---CHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCH--HHHHH
Confidence            334444444433323444444444432   345666665553322          233456666677777763  56887


Q ss_pred             HHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhh-cccchhhHHHHHHHHHHhcc
Q 007426          106 CSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLL-GSQESLTAGAALCLKALVDS  163 (604)
Q Consensus       106 C~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~-~qqe~vQsGAALCLAAlVEs  163 (604)
                      ++.+.+.+-    +            ...+.||.+.|. ..++.|...||..|.++-+.
T Consensus        94 a~~aLg~~~----~------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~  136 (335)
T COG1413          94 AADALGELG----D------------PEAVPPLVELLENDENEGVRAAAARALGKLGDE  136 (335)
T ss_pred             HHHHHHccC----C------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence            777333222    1            235677777777 47778888888888887775

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=87.58  E-value=0.61  Score=35.91  Aligned_cols=53  Identities=21%  Similarity=0.135  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          234 SQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       234 Wq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      |..|.+|+.+|..++... ++.+..+...++..|-.+=-|.=..||.++..||.
T Consensus         1 p~vR~~A~~aLg~l~~~~-~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGC-PELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTT-HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHhccc-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            899999999999976444 45677777888888887766666799999999884

...

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.31  E-value=5.8  Score=42.86  Aligned_cols=150  Identities=13%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             hhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhH
Q 007426           60 GEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLS  139 (604)
Q Consensus        60 Rke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~  139 (604)
                      .=..|..+..|+++|...+.|.|-+++-+||+.|+.+-|+| -|.||+ +++.|..+.-         ..+. .-|.+|.
T Consensus       105 ~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~V-sraA~~-t~~difs~ln---------~~i~-~~ld~lv  172 (334)
T KOG2933|consen  105 KVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAV-SRAACM-TLADIFSSLN---------NSID-QELDDLV  172 (334)
T ss_pred             HhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHH-HHHHHHHHHH---------HHHH-HHHHHHH
Confidence            44678889999999999999999999999999999999876 477886 3455554432         2233 3777777


Q ss_pred             Hhhhccc----chhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcC--CccchhhHHHHHHHHHHhh-hhHHHH
Q 007426          140 DSLLGSQ----ESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEE--KSTQTNSHMGLVMALAKHN-ALIVEA  212 (604)
Q Consensus       140 EaL~~qq----e~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~--ks~qtkAhl~LV~ALs~~n-~~iiea  212 (604)
                      -.|.+.-    ..+---|==.|-|+|...    .|..+++.|.+    .+..  +..++++-+....-+...+ ..+.++
T Consensus       173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~v----tp~~~L~~L~~----~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~  244 (334)
T KOG2933|consen  173 TQLLHKASQDNRFVREDAEKALVAMVNHV----TPQKLLRKLIP----ILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ  244 (334)
T ss_pred             HHHHhhhcccchHHHHHHHHHHHHHHhcc----ChHHHHHHHHH----HHhhhchhhhhhhhccccccceeccccchhhH
Confidence            7777643    234445555677888864    24445555444    4443  3334444333333333332 335566


Q ss_pred             hHHHHHHHHHHHhcCCC
Q 007426          213 YARLLIQSGLRILNAGP  229 (604)
Q Consensus       213 ~g~~Ll~S~l~~L~~~~  229 (604)
                      |-.-+++++.+=+.+.+
T Consensus       245 ~~~dl~~a~~~~~~d~L  261 (334)
T KOG2933|consen  245 GSCDLSRAAQEQGSDKL  261 (334)
T ss_pred             hHHHHHHHHHhhhcccc
Confidence            66677788777666544

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=87.23  E-value=2  Score=50.00  Aligned_cols=116  Identities=14%  Similarity=0.182  Sum_probs=87.2

Q ss_pred             CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426           18 KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA   97 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd   97 (604)
                      +|.--|..-....--.|+.|--+.+-+||..+|-++++ ...|.-||++...+|.+-|+.+.||++-+|..|-+-|.|-.
T Consensus       293 ~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkS-w~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~  371 (975)
T COG5181         293 KDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKS-WEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS  371 (975)
T ss_pred             ccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccc-hhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccc
Confidence            34445555566666778888888899999999987754 24599999999999999999999999999999999998864


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhh
Q 007426           98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSL  142 (604)
Q Consensus        98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL  142 (604)
                        ..||=--+.+..+||.... |-+     -+.|.++.+||-+-.
T Consensus       372 --~~vRi~tA~alS~lae~~~-Pyg-----ie~fd~vl~pLw~g~  408 (975)
T COG5181         372 --RFVRIDTANALSYLAELVG-PYG-----IEQFDEVLCPLWEGA  408 (975)
T ss_pred             --eeeeehhHhHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHHH
Confidence              3467666666666664322 222     245777888887643

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=87.09  E-value=2.9  Score=49.65  Aligned_cols=111  Identities=19%  Similarity=0.299  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhh
Q 007426           23 RKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPL  102 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~v  102 (604)
                      |..-....--.|..|--..+-+||..+|-++.+ .-.|.-||++..-+|.+-|+.+.|||.-+|.-|-.-|.|-.  ..|
T Consensus       493 Rnttarafavvasalgip~llpfLkavc~SkkS-wqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~--qkV  569 (1172)
T KOG0213|consen  493 RNTTARAFAVVASALGIPALLPFLKAVCGSKKS-WQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQ--QKV  569 (1172)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHhccccc-hhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccc--hhh
Confidence            444444455566677777788999999977654 24599999999999999999999999999999888888764  235


Q ss_pred             HHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhh
Q 007426          103 QQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSL  142 (604)
Q Consensus       103 R~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL  142 (604)
                      |---+-++++||-... |-+     -+.|.+++|||-+-.
T Consensus       570 R~itAlalsalaeaa~-Pyg-----ie~fDsVlkpLwkgi  603 (1172)
T KOG0213|consen  570 RTITALALSALAEAAT-PYG-----IEQFDSVLKPLWKGI  603 (1172)
T ss_pred             hhHHHHHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHHH
Confidence            6555555555553221 222     246788999998754

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.38  E-value=17  Score=46.14  Aligned_cols=224  Identities=16%  Similarity=0.213  Sum_probs=125.1

Q ss_pred             HHHHHHHHhhcCCCChhHHHhhhccCC-CC-CCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHH
Q 007426           27 MKALKSYVKDLDSKAIPLFLAQVSETK-EN-GSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQ  104 (604)
Q Consensus        27 ~~eLesiak~Ld~dtlP~FLscV~dtd-~~-~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~  104 (604)
                      |+.++.++..+|-..+--....|.+.- .. +-+.|--|=+.+..|+.-.|--+-|+-+|.|....--++|-.++  +|-
T Consensus      1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNes--v~k 1295 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNES--VRK 1295 (1702)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHH--HHH
Confidence            345556666666555444445555542 21 23567778888888888899999999999999999999998875  599


Q ss_pred             HHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchh-hHHHHHHHHHHhccCCCCCCCHHHHH---HHHHH
Q 007426          105 ACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESL-TAGAALCLKALVDSDNWRFASDEMVN---KVCQN  180 (604)
Q Consensus       105 AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~v-QsGAALCLAAlVEs~nwr~Ap~elv~---rlc~R  180 (604)
                      +|+-++|-|+++..     ++..    ..+..-+..=++++.++. ++--|.-..  |-+    ++++.+=|   .+.|-
T Consensus      1296 afAsAmG~L~k~Ss-----~dq~----qKLie~~l~~~l~k~es~~siscatis~--Ian----~s~e~Lkn~asaILPL 1360 (1702)
T KOG0915|consen 1296 AFASAMGYLAKFSS-----PDQM----QKLIETLLADLLGKDESLKSISCATISN--IAN----YSQEMLKNYASAILPL 1360 (1702)
T ss_pred             HHHHHHHHHHhcCC-----hHHH----HHHHHHHHHHHhccCCCccchhHHHHHH--HHH----hhHHHHHhhHHHHHHH
Confidence            99999999998854     2222    334444444455555543 333222221  221    22332211   34444


Q ss_pred             HHHhhcCCccchhh---HHHHHHH-HHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCC---
Q 007426          181 VAGALEEKSTQTNS---HMGLVMA-LAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDP---  253 (604)
Q Consensus       181 v~kaL~~ks~qtkA---hl~LV~A-Ls~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~---  253 (604)
                      +.=+..+.   +|+   +..=|-. ++.-+..++.-|.   ..-...+....+.++.|..||-+|-++..++.....   
T Consensus      1361 iFLa~~ee---~Ka~q~Lw~dvW~e~vsggagtvrl~~---~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~ 1434 (1702)
T KOG0915|consen 1361 IFLAMHEE---EKANQELWNDVWAELVSGGAGTVRLYL---LEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAP 1434 (1702)
T ss_pred             HHHHHhHH---HHHHHHHHHHHHHHhCCCCcchhhhhH---HHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCC
Confidence            44333332   222   1111111 1111112222222   222333444444477799999999999999865431   


Q ss_pred             -CchhhhHHHHHHHHHhccCC
Q 007426          254 -RSIFSELELIIEGMENCQSD  273 (604)
Q Consensus       254 -~~L~se~~S~I~~LE~cRfD  273 (604)
                       +.|.......+..|..+=||
T Consensus      1435 ~p~ilkl~~~ll~~L~GRiwd 1455 (1702)
T KOG0915|consen 1435 IPVILKLALSLLDTLNGRIWD 1455 (1702)
T ss_pred             hHHHHHHHHHHHHHhhccccc
Confidence             12333445555666666655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=85.95  E-value=18  Score=45.04  Aligned_cols=223  Identities=15%  Similarity=0.187  Sum_probs=142.1

Q ss_pred             hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC
Q 007426           42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT  121 (604)
Q Consensus        42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~  121 (604)
                      +|...+||..-+.+  ..+-.+|.|+..|++.--+-.  -|.+|+=.+|-=+.|+.-  .||.+-..++..+-.-+.|- 
T Consensus       424 vs~lts~IR~lk~~--~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a--~Vra~Al~Tlt~~L~~Vr~~-  496 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTI--QTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEA--DVRATALETLTELLALVRDI-  496 (1431)
T ss_pred             HHHHHHHHHhhhcc--hhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchH--HHHHHHHHHHHHHHhhccCC-
Confidence            56666777654443  458999999999999876654  478888899998899984  47876666666666555551 


Q ss_pred             CccccchhhHHhhhchhHHhhhccc--chhhHHHHHHHHHHhccCCCC-------------C------CCH--------H
Q 007426          122 TPEDKKRHIIHSLCKPLSDSLLGSQ--ESLTAGAALCLKALVDSDNWR-------------F------ASD--------E  172 (604)
Q Consensus       122 ~~~~~~~~ii~sl~KPL~EaL~~qq--e~vQsGAALCLAAlVEs~nwr-------------~------Ap~--------e  172 (604)
                      .+.+  ..||....=|-.--|...+  ..|-+.-|-|||.+-+.++-.             .      ++.        .
T Consensus       497 ~~~d--aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~  574 (1431)
T KOG1240|consen  497 PPSD--ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQA  574 (1431)
T ss_pred             Cccc--chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHH
Confidence            1222  3588888888777777763  568999999999887653310             0      111        1


Q ss_pred             HHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007426          173 MVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-----LLIQSGLRILNAGPGEANSQKRLLAIQMLNF  246 (604)
Q Consensus       173 lv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-----~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~  246 (604)
                      +++-|-..|..+|.++...-| ++|.-+.=|-..       .|.     -||+-...+|.+    .||+.|-|=.|-|.-
T Consensus       575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F-------FGk~ksND~iLshLiTfLND----kDw~LR~aFfdsI~g  643 (1431)
T KOG1240|consen  575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF-------FGKEKSNDVILSHLITFLND----KDWRLRGAFFDSIVG  643 (1431)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH-------hhhcccccchHHHHHHHhcC----ccHHHHHHHHhhccc
Confidence            222344445555555442222 333332221111       222     378888899994    699999999999998


Q ss_pred             HHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          247 LMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       247 la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      |+-.++.+.+.+.+ ...++.|    -|.=..|=..|.++|..
T Consensus       644 vsi~VG~rs~seyllPLl~Q~l----tD~EE~Viv~aL~~ls~  682 (1431)
T KOG1240|consen  644 VSIFVGWRSVSEYLLPLLQQGL----TDGEEAVIVSALGSLSI  682 (1431)
T ss_pred             eEEEEeeeeHHHHHHHHHHHhc----cCcchhhHHHHHHHHHH
Confidence            88888888777665 3344433    35555555555554443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.66  E-value=15  Score=41.87  Aligned_cols=240  Identities=17%  Similarity=0.174  Sum_probs=137.4

Q ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426            9 LRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP   80 (604)
Q Consensus         9 ~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP   80 (604)
                      +-+.|.+=. ++..+--|+-.|-.||..        .+++.+|.|+.++.++..   .++++++--|+-+|.   +.  |
T Consensus       114 lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~---~v~eQavWALgNIag---ds--~  184 (514)
T KOG0166|consen  114 LVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA---DVREQAVWALGNIAG---DS--P  184 (514)
T ss_pred             HHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH---HHHHHHHHHHhcccc---CC--h
Confidence            334444333 466666688888888874        368899999999997655   488999887776653   11  2


Q ss_pred             cH------HHHHHHHHhhccCCCC-ChhhHHHHHHHHHHHHhhcC--CCCCccccchhhHHhhhchhHHhhhcccchhhH
Q 007426           81 QI------DSIMTTITKTLASSAG-SFPLQQACSRVVPAIARYGI--DPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTA  151 (604)
Q Consensus        81 hL------~KImstIVRRLsDsdS-S~~vR~AC~kvv~ALAry~i--dp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQs  151 (604)
                      +.      ..+|..+++-|..++. ++ +|.    ++=+|+-.+.  +|+.+-+.-.+++    .=|+-.|-+..+.|..
T Consensus       185 ~~Rd~vl~~g~l~pLl~~l~~~~~~~~-lRn----~tW~LsNlcrgk~P~P~~~~v~~iL----p~L~~ll~~~D~~Vl~  255 (514)
T KOG0166|consen  185 DCRDYVLSCGALDPLLRLLNKSDKLSM-LRN----ATWTLSNLCRGKNPSPPFDVVAPIL----PALLRLLHSTDEEVLT  255 (514)
T ss_pred             HHHHHHHhhcchHHHHHHhccccchHH-HHH----HHHHHHHHHcCCCCCCcHHHHHHHH----HHHHHHHhcCCHHHHH
Confidence            11      1244555565555543 22 343    4556663333  3655534433333    2333444556667888


Q ss_pred             HHHHHHHHHhccCCCCCCCHHHHH--HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcC
Q 007426          152 GAALCLKALVDSDNWRFASDEMVN--KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRILNA  227 (604)
Q Consensus       152 GAALCLAAlVEs~nwr~Ap~elv~--rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~  227 (604)
                      -|+-.|.-+.|..|-   --.+|-  .+|+|+..+|+.++..+. +-|..+|-++..+..-..+- ...+|++...+|..
T Consensus       256 Da~WAlsyLsdg~ne---~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~  332 (514)
T KOG0166|consen  256 DACWALSYLTDGSNE---KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS  332 (514)
T ss_pred             HHHHHHHHHhcCChH---HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence            888889889886331   112332  599999999998775554 34444554333332211111 11234555555552


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhhcCCCch----h-hhHHHHHHHHHhccCC
Q 007426          228 GPGEANSQKRLLAIQMLNFLMKSLDPRSI----F-SELELIIEGMENCQSD  273 (604)
Q Consensus       228 ~~~ssDWq~RKAAAeaL~~la~~~d~~~L----~-se~~S~I~~LE~cRfD  273 (604)
                         +..---||.|+=+|.-|.+ ...+-+    . ..+...++.|++--||
T Consensus       333 ---s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~  379 (514)
T KOG0166|consen  333 ---SPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFD  379 (514)
T ss_pred             ---CcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchH
Confidence               2333478889888888753 222111    1 1346677777777765

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=83.67  E-value=7.3  Score=34.52  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             CCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426           54 ENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARY  116 (604)
Q Consensus        54 ~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry  116 (604)
                      ++..|+|-|+|.++..|-+.+- ..+-++++|+.-...-|+|+|| + |-=+|.+..++|+..
T Consensus        14 dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~Ds-y-VYL~aI~~L~~La~~   73 (92)
T PF10363_consen   14 DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDS-Y-VYLNAIKGLAALADR   73 (92)
T ss_pred             CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCc-h-HHHHHHHHHHHHHHH
Confidence            4446899999999999999886 6788899999999999999996 4 578999999999955

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=83.37  E-value=3.7  Score=36.85  Aligned_cols=70  Identities=13%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             HHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426           45 FLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI  118 (604)
Q Consensus        45 FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i  118 (604)
                      |=..+.|-....+ .-|+.+|+=++.+-+..|..|.++.||||+++--.|..++    +|..|.++-.++-+++-
T Consensus        16 f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~----l~~~al~~W~~fi~~L~   86 (107)
T PF08064_consen   16 FSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPE----LREEALSCWNCFIKTLD   86 (107)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChh----hHHHHHHHHHHHHHHCC
Confidence            4444554222222 5699999999999999999999999999999999988885    79999999999988875

; GO: 0004674 protein serine/threonine kinase activity

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=81.76  E-value=11  Score=35.92  Aligned_cols=90  Identities=12%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc-CCCCCccccchhhHHhhhc
Q 007426           58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG-IDPTTPEDKKRHIIHSLCK  136 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~-idp~~~~~~~~~ii~sl~K  136 (604)
                      .+|-.+|-.++.|+.-|+..+=||++.|.    +.|+|++  ..||..|.-++.-|.... +++      ++.++..   
T Consensus         3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~----~~L~D~~--~~VR~~al~~Ls~Li~~d~ik~------k~~l~~~---   67 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYPNLVEPYLPNLY----KCLRDED--PLVRKTALLVLSHLILEDMIKV------KGQLFSR---   67 (178)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHH----HHHCCCC--HHHHHHHHHHHHHHHHcCceee------hhhhhHH---
Confidence            47899999999999999999989887765    6788887  358999988888887431 112      2223333   


Q ss_pred             hhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426          137 PLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus       137 PL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                       +.-+|..+++.++.-|..|+..+...
T Consensus        68 -~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   68 -ILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             -HHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence             44466777888999999999988885

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=81.28  E-value=21  Score=34.16  Aligned_cols=112  Identities=21%  Similarity=0.336  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q 007426          102 LQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN  180 (604)
Q Consensus       102 vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~R  180 (604)
                      ||..+.-++|.|+ ||-           .++.-++..|+.+|..+...|--.|.+||+.++..+--              
T Consensus         4 vR~n~i~~l~DL~~r~~-----------~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--------------   58 (178)
T PF12717_consen    4 VRNNAIIALGDLCIRYP-----------NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--------------   58 (178)
T ss_pred             HHHHHHHHHHHHHHhCc-----------HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--------------
Confidence            6888888888888 661           23445666777777777777777777777777764210              


Q ss_pred             HHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH
Q 007426          181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL  260 (604)
Q Consensus       181 v~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~  260 (604)
                                             ++.+        .++...+.+|.    .+|+.-|..|...+..++...++..+...+
T Consensus        59 -----------------------k~k~--------~l~~~~l~~l~----D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~  103 (178)
T PF12717_consen   59 -----------------------KVKG--------QLFSRILKLLV----DENPEIRSLARSFFSELLKKRNPNIIYNNF  103 (178)
T ss_pred             -----------------------eehh--------hhhHHHHHHHc----CCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence                                   1111        01233344455    478999999999999998876778888888


Q ss_pred             HHHHHHHHhccCC
Q 007426          261 ELIIEGMENCQSD  273 (604)
Q Consensus       261 ~S~I~~LE~cRfD  273 (604)
                      ..||-.|..+.-+
T Consensus       104 ~e~i~~l~~~~~~  116 (178)
T PF12717_consen  104 PELISSLNNCYEH  116 (178)
T ss_pred             HHHHHHHhCcccc
Confidence            9999999988654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.10  E-value=95  Score=38.89  Aligned_cols=237  Identities=15%  Similarity=0.163  Sum_probs=152.4

Q ss_pred             HHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhh--------hccC-CCCCCCchhhHHHHHHHHHHHhCCCCccc
Q 007426           11 QELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQ--------VSET-KENGSVSGEYTISLYEVLARVHGANIVPQ   81 (604)
Q Consensus        11 qeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLsc--------V~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPh   81 (604)
                      .+.++-+ +.-+|+=|.+=|+.....   ...-.|..+        |.|+ +..+++.++..+.-+..|-..|+.-..-.
T Consensus       660 ~~~e~~~-~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~  735 (1176)
T KOG1248|consen  660 PEFENSS-STKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL  735 (1176)
T ss_pred             HHhhccc-cHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3444444 566667777777666554   223333333        2222 44456778888888888889998556666


Q ss_pred             HHHHHHHHHhhccCCCCC-hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426           82 IDSIMTTITKTLASSAGS-FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL  160 (604)
Q Consensus        82 L~KImstIVRRLsDsdSS-~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl  160 (604)
                      ++|.|..+|=-+.+-+=. =..+-+|-..++++..+.++.   .|....++..|+.=|.+.|+++--.+.+-.=+.+..+
T Consensus       736 i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g---~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  736 IPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG---NEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc---ccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence            777777777666444311 113349999999988777642   2224778999999999998887755433323333333


Q ss_pred             h-ccCCCCCCCHHHHHHHHHHHHHhhcCC-ccchhhHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCCCCCCCHHHH
Q 007426          161 V-DSDNWRFASDEMVNKVCQNVAGALEEK-STQTNSHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAGPGEANSQKR  237 (604)
Q Consensus       161 V-Es~nwr~Ap~elv~rlc~Rv~kaL~~k-s~qtkAhl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~~~ssDWq~R  237 (604)
                      + |..+  +-.++.+++|..-|+..|.+. .-.++|-++.+-.+...-+ ..+.++...||++.+..++    ...=--|
T Consensus       813 l~e~~~--~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~----d~k~~~r  886 (1176)
T KOG1248|consen  813 LQEFKN--ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH----DHKIKVR  886 (1176)
T ss_pred             HHHHhc--cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH----hhhHHHH
Confidence            3 3333  578899999999999999864 4445566666665555554 4566777778899888777    3345677


Q ss_pred             HHHHHHHHHHHhhcCCCchhhhH
Q 007426          238 LLAIQMLNFLMKSLDPRSIFSEL  260 (604)
Q Consensus       238 KAAAeaL~~la~~~d~~~L~se~  260 (604)
                      ++.-..|-.+..-.+...|..+.
T Consensus       887 ~Kvr~LlekLirkfg~~eLe~~~  909 (1176)
T KOG1248|consen  887 KKVRLLLEKLIRKFGAEELESFL  909 (1176)
T ss_pred             HHHHHHHHHHHHHhCHHHHHhhC
Confidence            88777777776555555555544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=80.09  E-value=69  Score=36.73  Aligned_cols=197  Identities=20%  Similarity=0.225  Sum_probs=123.3

Q ss_pred             ChHHHHHHhhhcCC--chhHHHHHHHHHHHHhhcCCCChhH-----HHhhhccC-CC-CCCCchhhHHHHHHHHHHHhCC
Q 007426            6 SPILRQELANLDKD--ADSRKSAMKALKSYVKDLDSKAIPL-----FLAQVSET-KE-NGSVSGEYTISLYEVLARVHGA   76 (604)
Q Consensus         6 sp~~rqeL~KLs~D--RDT~~iA~~eLesiak~Ld~dtlP~-----FLscV~dt-d~-~~s~vRke~I~Lle~LArvHG~   76 (604)
                      +++|++-|++++-+  .+.++.|+-+|-.+...= .-++.-     .|--|.++ ++ .+..-++.|+|+++..++....
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~  363 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA  363 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence            68899999999844  477888999988776532 223332     23334444 22 3345699999999999998876


Q ss_pred             CCcccHHHHHHHHHhhc---cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHH
Q 007426           77 NIVPQIDSIMTTITKTL---ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGA  153 (604)
Q Consensus        77 ~iaPhL~KImstIVRRL---sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGA  153 (604)
                      .+.-   --+-+|.|.|   .|+.=-+ +|.|=-+....||.|  +|..      . |. ...|++   .+..++- .-|
T Consensus       364 ~l~D---stE~ai~K~Leaa~ds~~~v-~~~Aeed~~~~las~--~P~~------~-I~-~i~~~I---lt~D~~~-~~~  425 (516)
T KOG2956|consen  364 RLFD---STEIAICKVLEAAKDSQDEV-MRVAEEDCLTTLASH--LPLQ------C-IV-NISPLI---LTADEPR-AVA  425 (516)
T ss_pred             hhhc---hHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHhh--Cchh------H-HH-HHhhHH---hcCcchH-HHH
Confidence            6544   3455677777   4443212 454444444445544  3433      1 12 333443   2233333 235


Q ss_pred             HH-HHHHHhccCCCCCCCHH----HHHHHHHHHHHhhcCCccch-h-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhc
Q 007426          154 AL-CLKALVDSDNWRFASDE----MVNKVCQNVAGALEEKSTQT-N-SHMGLVMALAKHNALIVEAYARLLIQSGLRILN  226 (604)
Q Consensus       154 AL-CLAAlVEs~nwr~Ap~e----lv~rlc~Rv~kaL~~ks~qt-k-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~  226 (604)
                      ++ ||.+++|.     -+.|    +|.++.|-+.++-++.+--- | |-+-||.-+.+++.-..++|.+.|-.+=+..|+
T Consensus       426 ~iKm~Tkl~e~-----l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Llq  500 (516)
T KOG2956|consen  426 VIKMLTKLFER-----LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQ  500 (516)
T ss_pred             HHHHHHHHHhh-----cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHH
Confidence            56 99999997     4555    34478888999999755333 4 788888666666668889999887666555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	604
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 87/576 (15%), Positives = 171/576 (29%), Gaps = 122/576 (21%)

Query: 30  LKSYVKDLDSKAIPLFLAQVSETKE-----NGSVSGEYTISLYEVLARVHGANIV----- 79
             ++V + D K +      +   +E         +   T+ L+  L       +V     
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVE 84

Query: 80  ----PQIDSIMTTITKTLASSAGSFPLQQAC----SRVVPAIARYGIDPTTPEDKKRHII 131
                    +M+ I       +    +               A+Y +    P  K R  +
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 132 HSLCKPLSDSLL----GSQES-LTAGAALCLKALVDSDN---W----RFASDEMVNKVCQ 179
             L +P  + L+    GS ++ +     L  K     D    W       S E V ++ Q
Sbjct: 145 LEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 180 NVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQS-----GLRILNAGPGEANS 234
            +   ++   T  + H     +  K     ++A  R L++S      L +L        +
Sbjct: 204 KLLYQIDPNWTSRSDH----SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NVQN 255

Query: 235 QKRLLAIQMLNF----LMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAK 290
            K   A    N     L+ +   + +   L        +     M          L    
Sbjct: 256 AK---AWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 291 RIAAENGPKFEKGSG-----SVIGSNFGRDHNRRRNL--LNGDN------RSPSSMSP-E 336
               ++ P+ E  +      S+I  +         N   +N D        S + + P E
Sbjct: 312 DCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 337 SQTL-NSFA--EYDSFIESPVSMSQLSCDTEYDC--RSVNRNVNRKL---WSFENGGVDV 388
            + + +  +     + I + + +S +  D         VN+     L      E+    +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES---TI 426

Query: 389 SLKDGLYSVVQGSPIRSISYSSHHEINDSGGDYTDEFTGFFQRSPRDRATRSTTPSPQRS 448
           S+   +Y  ++        Y+ H  I D    Y           P+   +    P     
Sbjct: 427 SIPS-IYLELKVK--LENEYALHRSIVDH---Y---------NIPKTFDSDDLIPPYLDQ 471

Query: 449 --HSHI-----NVDNIGIFTTPRRLIRSLQDVNTDFSEKQSRR----FRSPSSI------ 491
             +SHI     N+++    T  R +      ++  F E++ R     + +  SI      
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 492 --KYEQSPTPRRNGFSREVFYDVKRNGNLHNEDEQL 525
              Y+         + R V   +     L   +E L
Sbjct: 527 LKFYKPYICDNDPKYERLV-NAILD--FLPKIEENL 559

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	604
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.32
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.03
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.98
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.97
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.95
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.95
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.9
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.86
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.85
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.79
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.68
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.68
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.65
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.61
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.54
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.35
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.28
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.28
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.2
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.19
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.15
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.1
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.06
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.05
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.03
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.03
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.86
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.79
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.67
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.63
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.61
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.61
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.47
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.45
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.42
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.4
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.39
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.29
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.23
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.19
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.14
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.11
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.99
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.95
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.88
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.84
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.83
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.7
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.67
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.52
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.33
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.04
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.52
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.46
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	95.08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	94.68
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	94.45
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.36
3nmz_A	458	APC variant protein; protein-protein complex, arma	94.33
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	93.55
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	93.51
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	93.1
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	91.81
3nmz_A	458	APC variant protein; protein-protein complex, arma	91.17
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	90.6
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	89.55
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	87.81
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	87.8
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	87.64
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	87.13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	84.93
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	83.48
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	83.14
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	81.13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	80.83

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.32  E-value=1.4e-11  Score=115.37  Aligned_cols=191  Identities=14%  Similarity=0.171  Sum_probs=153.4

Q ss_pred             HHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHhhcCCCCC
Q 007426           44 LFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTL-ASSAGSFPLQQACSRVVPAIARYGIDPTT  122 (604)
Q Consensus        44 ~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRL-sDsdSS~~vR~AC~kvv~ALAry~idp~~  122 (604)
                      .|+..+.+.+.   ..|+.++.-+..+...|+..+.+++.+|+..+.++| .|++.  .||.+..++++.|+..+..   
T Consensus        19 ~l~~~l~s~~w---~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~--~V~~~a~~~l~~la~~l~~---   90 (242)
T 2qk2_A           19 DFYDKLEEKKW---TLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNV--VLVAMAGKCLALLAKGLAK---   90 (242)
T ss_dssp             THHHHHTCSSH---HHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHGG---
T ss_pred             HHHhhhccCCH---HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHHhh---
Confidence            47777765443   479999999999999988878889999999999999 49874  5799999999999965431   


Q ss_pred             ccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHH
Q 007426          123 PEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMA  201 (604)
Q Consensus       123 ~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~A  201 (604)
                         .-...+..++.+|++.|.+++..+...|+-||.++++..     +   +..+++.+..+|++++.+.+ .-+..++.
T Consensus        91 ---~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~  159 (242)
T 2qk2_A           91 ---RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----S---LEAQQESIVESLSNKNPSVKSETALFIAR  159 (242)
T ss_dssp             ---GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----C---HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence               123456779999999999999999999999999999963     2   56889999999999887777 56666766


Q ss_pred             H-HHhhhh-HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchh
Q 007426          202 L-AKHNAL-IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIF  257 (604)
Q Consensus       202 L-s~~n~~-iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~  257 (604)
                      + ..+++. ....|...+++.+..+|.    ..+|..|++|.++|..|+..++.+.+.
T Consensus       160 ~l~~~~~~~~~~~~l~~l~p~l~~~l~----D~~~~VR~~A~~~l~~l~~~vg~~~~~  213 (242)
T 2qk2_A          160 ALTRTQPTALNKKLLKLLTTSLVKTLN----EPDPTVRDSSAEALGTLIKLMGDKAVT  213 (242)
T ss_dssp             HHTTCCGGGCCHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHcCCCCccHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHcCHHHHH
Confidence            4 343333 346777889999999998    689999999999999999888643333

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.05  E-value=1.5e-09  Score=118.46  Aligned_cols=259  Identities=14%  Similarity=0.113  Sum_probs=184.8

Q ss_pred             CchhHHHHHHHHHHHHhhcCC---CChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc
Q 007426           19 DADSRKSAMKALKSYVKDLDS---KAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLA   94 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~---dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLs   94 (604)
                      +.+.|..|++.|..+++....   +.++.||..+... .++...+|+.++..|..++..++..+.||+.+++..+++.+.
T Consensus       187 ~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~  266 (852)
T 4fdd_A          187 SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ  266 (852)
T ss_dssp             SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc
Confidence            556678899999888764331   2345566555542 233346899999999999999999999999999999999998


Q ss_pred             CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhh-----------c-----------ccchhhHH
Q 007426           95 SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLL-----------G-----------SQESLTAG  152 (604)
Q Consensus        95 DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~-----------~-----------qqe~vQsG  152 (604)
                      |.+.  .||..+.....+++....   .. .--...+..++..|+..|.           +           ..-.+.-.
T Consensus       267 ~~~~--~vr~~a~e~l~~l~~~~~---~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~  340 (852)
T 4fdd_A          267 DQDE--NVALEACEFWLTLAEQPI---CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC  340 (852)
T ss_dssp             CSSH--HHHHHHHHHHHHHTTSTT---HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred             CCcH--HHHHHHHHHHHHHhcchh---HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence            8774  368877777777764210   00 0001123344555555551           2           11246778


Q ss_pred             HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCC
Q 007426          153 AALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGE  231 (604)
Q Consensus       153 AALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~s  231 (604)
                      |+.||..+.+..     +++++..+.+.+...|++++.+.+ +-+..+++++...+..+..+...+++..+..|+    .
T Consensus       341 a~~~L~~la~~~-----~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~----d  411 (852)
T 4fdd_A          341 SAAALDVLANVY-----RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS----D  411 (852)
T ss_dssp             HHHHHHHHHHHH-----GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT----C
T ss_pred             HHHHHHHHHHhc-----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC----C
Confidence            999999999862     467888999999999998766665 556666777766665666788888999899988    6


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHh
Q 007426          232 ANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRI  292 (604)
Q Consensus       232 sDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~I  292 (604)
                      .+|..|++|+.+|..++..+.......+...++..|-.+=-|.-+.||+++..||...-+.
T Consensus       412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999876543334455666776666555577899999999999765543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.05  E-value=2.3e-09  Score=121.43  Aligned_cols=271  Identities=13%  Similarity=0.099  Sum_probs=186.4

Q ss_pred             HHHHHHhhh-cCCchhHHHHHHHHHHHHhh----cCCC----ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426            8 ILRQELANL-DKDADSRKSAMKALKSYVKD----LDSK----AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI   78 (604)
Q Consensus         8 ~~rqeL~KL-s~DRDT~~iA~~eLesiak~----Ld~d----tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i   78 (604)
                      .+-+.|.|+ +.|.|.|++|+++|....+.    ++++    .+|.++..+.|   +...+|+.++..++.++..-+.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~l~~~~~~--   81 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED---KNGEVQNLAVKCLGPLVSKVKE--   81 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTSCH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhCCH--
Confidence            456777777 45889999999999988753    2333    25555555542   3346899999999999875444  


Q ss_pred             cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc-ccchhhHHHHHHH
Q 007426           79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG-SQESLTAGAALCL  157 (604)
Q Consensus        79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~-qqe~vQsGAALCL  157 (604)
                       ++++.|+..++..|.|++.  .+|.++..+++.++..+........-.......++..|+++|.. ++..++.+|..+|
T Consensus        82 -~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l  158 (1230)
T 1u6g_C           82 -YQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM  158 (1230)
T ss_dssp             -HHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence             7999999999999988875  46999999999999775422100011223466788889999974 5567899999999


Q ss_pred             HHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426          158 KALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQK  236 (604)
Q Consensus       158 AAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~  236 (604)
                      ..+++...-...|  .+.++++.+...|.+++...+ +-+..++.++...+.-   ....+++..++.|..   ..+|..
T Consensus       159 ~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~~~~l~~l~~~L~~---~~~~~~  230 (1230)
T 1u6g_C          159 ADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSK---NDSMST  230 (1230)
T ss_dssp             HHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH---TCSSCS
T ss_pred             HHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhcc---CCchhH
Confidence            9999753212223  468899999999997654332 2334444444433211   122356777777764   234688


Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426          237 RLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE  295 (604)
Q Consensus       237 RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~  295 (604)
                      |.+|+++|..|+..+. +.+..+...++..|-+.--|.-+.||+++.+++..|=+..++
T Consensus       231 r~~a~~~l~~l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          231 TRTYIQCIAAISRQAG-HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             CTTHHHHHHHHHHHSS-GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            9999999999998875 355555555555554444477889999999999999876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.03  E-value=2.8e-08  Score=105.80  Aligned_cols=252  Identities=12%  Similarity=0.113  Sum_probs=183.2

Q ss_pred             CchhHHHHHHHHHHHHhhcCC-----CC----hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC----CCCcccHHHH
Q 007426           19 DADSRKSAMKALKSYVKDLDS-----KA----IPLFLAQVSETKENGSVSGEYTISLYEVLARVHG----ANIVPQIDSI   85 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~-----dt----lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG----~~iaPhL~KI   85 (604)
                      ++.-|..|+..|.++++.+.+     ..    +|.++..+.+.    +.+|..+...+..++..-+    ..+.||++.|
T Consensus       424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~i  499 (861)
T 2bpt_A          424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH----PKVATNCSWTIINLVEQLAEATPSPIYNFYPAL  499 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            345677888899999887632     22    46666666532    5689999999998888755    6688999999


Q ss_pred             HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc---------------cchhh
Q 007426           86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS---------------QESLT  150 (604)
Q Consensus        86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q---------------qe~vQ  150 (604)
                      |..+++.|.+.+....+|.++.++++.|+....      ++....+..++.+|++.|...               ...++
T Consensus       500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~------~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~  573 (861)
T 2bpt_A          500 VDGLIGAANRIDNEFNARASAFSALTTMVEYAT------DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ  573 (861)
T ss_dssp             HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc------hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence            999999998666434589999999999997642      123345667888888888742               33467


Q ss_pred             HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCcc-chh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCC
Q 007426          151 AGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKST-QTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAG  228 (604)
Q Consensus       151 sGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~-qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~  228 (604)
                      .++.-||..+++.-.-.  -.+.+..+.+.+..+|+.... ..+ .-+.+++++++..+.-+.+|...+++..+.+|.  
T Consensus       574 ~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--  649 (861)
T 2bpt_A          574 SNILTVLAAVIRKSPSS--VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN--  649 (861)
T ss_dssp             HHHHHHHHHHHHHCGGG--TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--
Confidence            88888999998864311  124567888889999987653 232 456677788877766667888889999999997  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCC-c-cchhHHHHHHHH
Q 007426          229 PGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQ-M-AYVKGASLEALQ  287 (604)
Q Consensus       229 ~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDK-V-k~VR~am~eALq  287 (604)
                        ..++..|.+|+.+|..++..++ ..+..+...++..|-.+=-|. . +.||.++..++.
T Consensus       650 --~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~  707 (861)
T 2bpt_A          650 --QVDSPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG  707 (861)
T ss_dssp             --CTTSHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHHHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence              6899999999999999998886 456666666665544332222 2 578887776663

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.98  E-value=1.1e-08  Score=99.09  Aligned_cols=204  Identities=12%  Similarity=0.139  Sum_probs=153.6

Q ss_pred             HHHhhhccCCCCCCCchhhHHHHHHH-HHHHhCCCC--cccHHHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHhhcCC
Q 007426           44 LFLAQVSETKENGSVSGEYTISLYEV-LARVHGANI--VPQIDSIMTTITKTL-ASSAGSFPLQQACSRVVPAIARYGID  119 (604)
Q Consensus        44 ~FLscV~dtd~~~s~vRke~I~Lle~-LArvHG~~i--aPhL~KImstIVRRL-sDsdSS~~vR~AC~kvv~ALAry~id  119 (604)
                      -|...|.+++.   .-|++++.-+.. +..-+.+.+  ..++..++..+.+.| .|++  +.||.++..+++.|+..+..
T Consensus        20 ~f~~~l~s~~w---~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n--~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           20 DFQERITSSKW---KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN--IQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             THHHHHTCSSH---HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHhhcCCH---HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccc
Confidence            36666654444   368999877777 766566766  567789999999999 7887  45789999999999976641


Q ss_pred             CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHH
Q 007426          120 PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGL  198 (604)
Q Consensus       120 p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~L  198 (604)
                      +.+.    ..-...++-+|+|.|.++...|+--+..||.++++..+. .++..-+..+.+++..+|+.++.+.+ +-+..
T Consensus        95 ~~f~----~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~  169 (249)
T 2qk1_A           95 PGFS----KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQL  169 (249)
T ss_dssp             TTSC----HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             cccc----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            2221    023456888999999998888988888889999997542 22221245677788899999887777 56666


Q ss_pred             HHHHHHhhh---hHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHH
Q 007426          199 VMALAKHNA---LIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELE  261 (604)
Q Consensus       199 V~ALs~~n~---~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~  261 (604)
                      +..++...+   ..+..|. ..+++...++|.    .++...|.+|.++|..|++.++.+.+..++.
T Consensus       170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~----D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~  232 (249)
T 2qk1_A          170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN----DTQPAIRTIGFESFAILIKIFGMNTFVKTLE  232 (249)
T ss_dssp             HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHHCSGGGHHHHH
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            667666655   4566788 889999999998    5799999999999999999998665655443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.97  E-value=9.4e-09  Score=104.23  Aligned_cols=245  Identities=11%  Similarity=0.060  Sum_probs=170.4

Q ss_pred             CchhHHHHHHHHHHHHhhcCC-----CChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc--ccHHHHHHHHHh
Q 007426           19 DADSRKSAMKALKSYVKDLDS-----KAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV--PQIDSIMTTITK   91 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~-----dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia--PhL~KImstIVR   91 (604)
                      +...|+.|++.|..+++.+.+     +-+|.|+..+.|.+   ..+|+.+..-++.++...|....  ++++.|+..+.+
T Consensus       255 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~  331 (588)
T 1b3u_A          255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE---AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE  331 (588)
T ss_dssp             SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence            345789999999999987743     45788888776543   46899999999999998877644  688999999999


Q ss_pred             hccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH
Q 007426           92 TLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD  171 (604)
Q Consensus        92 RLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~  171 (604)
                      .+.|++.  .||.++..+++.|+..+.+        ......+...|...|..+++.|...|+-+|..+++.-    .++
T Consensus       332 ~l~d~~~--~vR~~a~~~l~~l~~~~~~--------~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~----~~~  397 (588)
T 1b3u_A          332 LVSDANQ--HVKSALASVIMGLSPILGK--------DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI----GIR  397 (588)
T ss_dssp             HHTCSCH--HHHHHHHTTGGGGHHHHCH--------HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS----CHH
T ss_pred             HhcCCCH--HHHHHHHHHHHHHHHHhhH--------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc----CHH
Confidence            8888763  5899999999988865421        1122334444555666666789999999999998862    344


Q ss_pred             HHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh
Q 007426          172 EMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKS  250 (604)
Q Consensus       172 elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~  250 (604)
                      .+.+.+.|.+.+++++++.+.. +-+.+++.+++.-+.-  .+...+++..+..|.    ..+|..|.+|+++|..++..
T Consensus       398 ~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~  471 (588)
T 1b3u_A          398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLV----DHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGG----CSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHH
Confidence            5667899999999988766554 3445555554432211  112345666667776    56888888888888888876


Q ss_pred             cCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          251 LDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       251 ~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                      .+...   ....++..|...-.|.-..||.++.+++...
T Consensus       472 ~~~~~---~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l  507 (588)
T 1b3u_A          472 FGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVL  507 (588)
T ss_dssp             HCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred             hCchh---HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            65321   2345556666666677777888777776554

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.95  E-value=4.2e-08  Score=99.50  Aligned_cols=219  Identities=17%  Similarity=0.144  Sum_probs=148.3

Q ss_pred             hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC
Q 007426           42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT  121 (604)
Q Consensus        42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~  121 (604)
                      +|.|+..+.|.   ...+|..++.-++.++...|..  .+.+.++..+++.+.|.+  ..+|.++..+++.++..+....
T Consensus       365 ~p~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~~~~  437 (588)
T 1b3u_A          365 LPLFLAQLKDE---CPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAK--WRVRLAIIEYMPLLAGQLGVEF  437 (588)
T ss_dssp             HHHHHHHHTCS---CHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhCCC---chHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHcCHHH
Confidence            34555555432   2346777777677666665532  134556666666666654  4578888899998886543110


Q ss_pred             CccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHH
Q 007426          122 TPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVM  200 (604)
Q Consensus       122 ~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~  200 (604)
                              ....++..|...|......|...|+.||+.+++.-    .+......+.|.+..++++++.+.. +-+.+++
T Consensus       438 --------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~----~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~  505 (588)
T 1b3u_A          438 --------FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF----GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN  505 (588)
T ss_dssp             --------CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----CHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence                    11235555666666666779999999999999862    3444567899999988888776654 4455555


Q ss_pred             HHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhH
Q 007426          201 ALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKG  280 (604)
Q Consensus       201 ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~  280 (604)
                      .++...+.  +.+...+++..+..|+    ..+...|.+|+.+|..+....+...+   ...++..|+...-|.=+.||.
T Consensus       506 ~l~~~~~~--~~~~~~~~~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~p~l~~l~~d~d~~vr~  576 (588)
T 1b3u_A          506 VLSEVCGQ--DITTKHMLPTVLRMAG----DPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKLTQDQDVDVKY  576 (588)
T ss_dssp             HHHHHHHH--HHHHHHTHHHHHHGGG----CSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHhcCH--HHHHHHHHHHHHhhCC----CCCchHHHHHHHHHHHHHHHhchhhh---HHHHHHHHHHHcCCCchhHHH
Confidence            55554322  2345567777778887    57899999999999999877754322   246677777778899999999


Q ss_pred             HHHHHHHH
Q 007426          281 ASLEALQT  288 (604)
Q Consensus       281 am~eALq~  288 (604)
                      .+.+|+..
T Consensus       577 ~a~~al~~  584 (588)
T 1b3u_A          577 FAQEALTV  584 (588)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.95  E-value=1.3e-08  Score=115.34  Aligned_cols=263  Identities=13%  Similarity=0.106  Sum_probs=187.2

Q ss_pred             HHHHHhhhc-CCchhHHHHHHHHHHHHhhcCCCC-------------hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh
Q 007426            9 LRQELANLD-KDADSRKSAMKALKSYVKDLDSKA-------------IPLFLAQVSETKENGSVSGEYTISLYEVLARVH   74 (604)
Q Consensus         9 ~rqeL~KLs-~DRDT~~iA~~eLesiak~Ld~dt-------------lP~FLscV~dtd~~~s~vRke~I~Lle~LArvH   74 (604)
                      +...+..|. .+...|..|+..|..|+..+.+..             +|.++.++.+  .+...+|.+++..|..++...
T Consensus        88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~--~~~~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK--QEDVSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC--CSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHh
Confidence            333444443 344558889999999999997652             5555555553  223468999999999999999


Q ss_pred             CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccc-hhhHHH
Q 007426           75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQE-SLTAGA  153 (604)
Q Consensus        75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe-~vQsGA  153 (604)
                      |..+.||++.++..++.-|.+++.  .||.+...+++.++.+..+.         .+..++.+|.+.|....+ .+..+|
T Consensus       166 ~~~l~~~~~~ll~~l~~~L~~~~~--~vR~~a~~al~~l~~~~~~~---------~~~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          166 GGLLVNFHPSILTCLLPQLTSPRL--AVRKRTIIALGHLVMSCGNI---------VFVDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSH--HHHHHHHHHHHHHTTTC-------------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HhHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHhccCCchhHHHHH
Confidence            999999999999999999988764  47999999999998765322         234466677777766543 567788


Q ss_pred             HHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCC----
Q 007426          154 ALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAG----  228 (604)
Q Consensus       154 ALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~----  228 (604)
                      +-|+..+++...-.+.  +.+.++.+-+..+|+++..... +-+.+.+.+++..+..+.+|...+++..++.|...    
T Consensus       235 ~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          235 IQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence            8999998886322222  2345678888888876544333 45666777777766655678888888877766310    


Q ss_pred             -----------------------------CCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchh
Q 007426          229 -----------------------------PGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVK  279 (604)
Q Consensus       229 -----------------------------~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR  279 (604)
                                                   .....|..|++|+++|..++... ++.+......++..|-.+=.|+-..||
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFYKTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHHTTTHHHHHSTTSCSSSHHH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHcCCCchHHH
Confidence                                         01224999999999999998754 455677777788888766569999999


Q ss_pred             HHHHHHHH
Q 007426          280 GASLEALQ  287 (604)
Q Consensus       280 ~am~eALq  287 (604)
                      .++.+++.
T Consensus       392 ~~a~~~l~  399 (1230)
T 1u6g_C          392 ADVFHAYL  399 (1230)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888864

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.90  E-value=9e-08  Score=101.97  Aligned_cols=261  Identities=11%  Similarity=0.105  Sum_probs=188.4

Q ss_pred             chhHHHHHHHHHHHHhhcCCCC-------hhHHHhhhccC--------C----CCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426           20 ADSRKSAMKALKSYVKDLDSKA-------IPLFLAQVSET--------K----ENGSVSGEYTISLYEVLARVHGANIVP   80 (604)
Q Consensus        20 RDT~~iA~~eLesiak~Ld~dt-------lP~FLscV~dt--------d----~~~s~vRke~I~Lle~LArvHG~~iaP   80 (604)
                      .+.|..|++.|..+++.+..+.       +|.++..+.+.        .    +....+|..++..++.+++.-|..+.|
T Consensus       514 ~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  593 (861)
T 2bpt_A          514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP  593 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             hHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            5668889999999999876542       23344444432        0    111245788999999999999999999


Q ss_pred             cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426           81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL  160 (604)
Q Consensus        81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl  160 (604)
                      |++.||..++..|.+.++. .+|..+..+++.|+....      ++-...+..++..|++.|......+...|.-|+..+
T Consensus       594 ~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~------~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l  666 (861)
T 2bpt_A          594 VADMLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLG------KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADI  666 (861)
T ss_dssp             GHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            9999999999999877641 368888889999985532      122334667888899999655566777788888888


Q ss_pred             hccCCCCCCCHHHHHHHHHHHHHhhcCCc--cchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCC--CCC--
Q 007426          161 VDSDNWRFASDEMVNKVCQNVAGALEEKS--TQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPG--EAN--  233 (604)
Q Consensus       161 VEs~nwr~Ap~elv~rlc~Rv~kaL~~ks--~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~--ssD--  233 (604)
                      ++.-.  ..-.+.+..+.+.+...|+++.  ...+ +-+.+++.++...+..+.+|...+++..+++++....  ..|  
T Consensus       667 ~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~  744 (861)
T 2bpt_A          667 SNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEAL  744 (861)
T ss_dssp             HHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHH
T ss_pred             HHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence            77632  1223567788888888888754  2333 5677788888887777788999999999998873110  111  


Q ss_pred             ---HHHHHHHHHHHHHHHhhcCC--CchhhhHHHHHHHHHhccCCC----ccchhHHHHHHHHHH
Q 007426          234 ---SQKRLLAIQMLNFLMKSLDP--RSIFSELELIIEGMENCQSDQ----MAYVKGASLEALQTA  289 (604)
Q Consensus       234 ---Wq~RKAAAeaL~~la~~~d~--~~L~se~~S~I~~LE~cRfDK----Vk~VR~am~eALq~w  289 (604)
                         +..|.++.+++..|+..++.  ..+..+...+++.|..+--|.    =..||.++..++...
T Consensus       745 ~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l  809 (861)
T 2bpt_A          745 DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI  809 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence               67899999999999988752  347777888999887764342    356888877776554

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.86  E-value=2.4e-08  Score=108.89  Aligned_cols=256  Identities=14%  Similarity=0.168  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChh
Q 007426           23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFP  101 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~  101 (604)
                      |+.|...|..+++.+..+.+|.++..|.+. .++...+|+.++..++.++...+..+.||++.++..+++.|.|+.  ..
T Consensus       338 r~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~--~~  415 (852)
T 4fdd_A          338 RKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK--AL  415 (852)
T ss_dssp             HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS--HH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC--HH
Confidence            888999999999998766666666555443 233457899999999999998888888999999999999998886  45


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Q 007426          102 LQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNV  181 (604)
Q Consensus       102 vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv  181 (604)
                      ||.++..+++.++.++...     .....+..++.+|++.|..++..++..|+.+|..+++..+-.  -.+.+..+.+.+
T Consensus       416 Vr~~a~~~l~~l~~~~~~~-----~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~--l~~~l~~ll~~L  488 (852)
T 4fdd_A          416 VRSITCWTLSRYAHWVVSQ-----PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL  488 (852)
T ss_dssp             HHHHHHHHHHHTHHHHHHS-----CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG--GGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh--hHhHHHHHHHHH
Confidence            8999999999999765311     122345677888888888777889999999999999864321  123456666666


Q ss_pred             HHhhcCCccchh-hHHHHH---------------------------------------------HHHHHhhhhHHHHhHH
Q 007426          182 AGALEEKSTQTN-SHMGLV---------------------------------------------MALAKHNALIVEAYAR  215 (604)
Q Consensus       182 ~kaL~~ks~qtk-Ahl~LV---------------------------------------------~ALs~~n~~iiea~g~  215 (604)
                      ..+|+....... ..+..+                                             +.+++.-+.-+.+|..
T Consensus       489 ~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~  568 (852)
T 4fdd_A          489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE  568 (852)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            666664321111 111222                                             2223333333344555


Q ss_pred             HHHHHHHHHhcC-------------CCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhH
Q 007426          216 LLIQSGLRILNA-------------GPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKG  280 (604)
Q Consensus       216 ~Ll~S~l~~L~~-------------~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~  280 (604)
                      .+++..+.+|..             .....|-..|.+|.++|..|+..++ ..+..+.  ..++..|-.|=-|+.+.||.
T Consensus       569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~vr~  647 (852)
T 4fdd_A          569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG-GNIEQLVARSNILTLMYQCMQDKMPEVRQ  647 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG-GGGHHHHHTCCHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh-HhHHHHhcCCcHHHHHHHHhCCCChhHHH
Confidence            555554444432             2334577899999999999998886 3455554  56888888888889999999


Q ss_pred             HHHHHHHH
Q 007426          281 ASLEALQT  288 (604)
Q Consensus       281 am~eALq~  288 (604)
                      +++.++..
T Consensus       648 ~a~~~l~~  655 (852)
T 4fdd_A          648 SSFALLGD  655 (852)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.85  E-value=8.2e-08  Score=102.52  Aligned_cols=263  Identities=10%  Similarity=0.067  Sum_probs=179.0

Q ss_pred             chhHHHHHHHHHHHHhhcCCC----Ch-hHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH-HHHHHHHhh
Q 007426           20 ADSRKSAMKALKSYVKDLDSK----AI-PLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID-SIMTTITKT   92 (604)
Q Consensus        20 RDT~~iA~~eLesiak~Ld~d----tl-P~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~-KImstIVRR   92 (604)
                      .+-|..|++.|..++..+..+    .. ..|+..+.+. .+....+|+.++..|..++..++..+.||+. .|+..++..
T Consensus       188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (876)
T 1qgr_A          188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  267 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            456788999999988755321    00 1233333321 2223468999999999999999999999999 999999998


Q ss_pred             ccCCCCChhhHHHHHHHHHHHHhhcCC--------------CCC-ccccchhhHHhhhchhHHhhhcc-------cchhh
Q 007426           93 LASSAGSFPLQQACSRVVPAIARYGID--------------PTT-PEDKKRHIIHSLCKPLSDSLLGS-------QESLT  150 (604)
Q Consensus        93 LsDsdSS~~vR~AC~kvv~ALAry~id--------------p~~-~~~~~~~ii~sl~KPL~EaL~~q-------qe~vQ  150 (604)
                      +.+.+-  .+|..+.+....++.+..+              |.. ...-....+..++.+|+..|...       .-.+.
T Consensus       268 ~~~~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r  345 (876)
T 1qgr_A          268 MKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC  345 (876)
T ss_dssp             HTCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred             hcCCch--HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHH
Confidence            877653  3688888888888865310              100 00111112355667777777643       22467


Q ss_pred             HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCC
Q 007426          151 AGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAG  228 (604)
Q Consensus       151 sGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~  228 (604)
                      -+|+.||..+++.-     +++++..+.+.+...|++++.+.+ +-+..++.++...+ ..+..+...+++..+..|.  
T Consensus       346 ~~a~~~l~~l~~~~-----~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~--  418 (876)
T 1qgr_A          346 KAAGVCLMLLATCC-----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK--  418 (876)
T ss_dssp             HHHHHHHHHHHHHH-----GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHC-----cHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC--
Confidence            78999999998862     356788899999999998776655 55556666665443 4456777888999999998  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhcCCCc-hhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhh
Q 007426          229 PGEANSQKRLLAIQMLNFLMKSLDPRS-IFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAA  294 (604)
Q Consensus       229 ~~ssDWq~RKAAAeaL~~la~~~d~~~-L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~  294 (604)
                        ..+|..|.+|+.+|..++....... ...+...++..|-.+=.|. +.||..+..||...-...+
T Consensus       419 --d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          419 --DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             --CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence              5789999999999999997764321 2334455554444433344 8899998888877655443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.79  E-value=2.7e-07  Score=98.52  Aligned_cols=259  Identities=10%  Similarity=0.089  Sum_probs=169.3

Q ss_pred             hHHHHHHHHHHHHhhcCCCC--------hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhc
Q 007426           22 SRKSAMKALKSYVKDLDSKA--------IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTL   93 (604)
Q Consensus        22 T~~iA~~eLesiak~Ld~dt--------lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRL   93 (604)
                      .+..++.-|..+++.+..+.        +|.++..+.+... ...+++.++.+++.++...|..+.||+++++..+++-|
T Consensus       580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l  658 (876)
T 1qgr_A          580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL  658 (876)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            45678889999998877112        3344444433211 13579999999999999999999999999999999999


Q ss_pred             cCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc--cchhhHHHHHHHHHHhccCCCCCCCH
Q 007426           94 ASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS--QESLTAGAALCLKALVDSDNWRFASD  171 (604)
Q Consensus        94 sDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q--qe~vQsGAALCLAAlVEs~nwr~Ap~  171 (604)
                      .+.+ ...+|.++..+++.|++.+.      +.-...+..++.+|.+.|...  ...+..-++.|+..++..-.-.+.  
T Consensus       659 ~~~~-~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~--  729 (876)
T 1qgr_A          659 KNYA-EYQVCLAAVGLVGDLCRALQ------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK--  729 (876)
T ss_dssp             HHCT-THHHHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG--
T ss_pred             cCcc-hHHHHHHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH--
Confidence            8763 23479999999999997653      122234566777788887662  346777888888887764221122  


Q ss_pred             HHHHHHHHHHHHhhcCCcc-----------chh-hHHHHHHHHHHhhh----------hHHHHhHHHHHHHHHHHhcCCC
Q 007426          172 EMVNKVCQNVAGALEEKST-----------QTN-SHMGLVMALAKHNA----------LIVEAYARLLIQSGLRILNAGP  229 (604)
Q Consensus       172 elv~rlc~Rv~kaL~~ks~-----------qtk-Ahl~LV~ALs~~n~----------~iiea~g~~Ll~S~l~~L~~~~  229 (604)
                      +.+..+.+.+.++++.+..           .-+ +-+.....+++..+          ..+.+|...++.-....+.   
T Consensus       730 ~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---  806 (876)
T 1qgr_A          730 KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG---  806 (876)
T ss_dssp             GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc---
Confidence            2567788888888875420           001 12222222222211          2334555555544444434   


Q ss_pred             CCC--CHHHHHHHHHHHHHHHhhcCCCchhhh-HHHHHHHHHh-ccCCCccchhHHHHHHHHHHHHhhh
Q 007426          230 GEA--NSQKRLLAIQMLNFLMKSLDPRSIFSE-LELIIEGMEN-CQSDQMAYVKGASLEALQTAKRIAA  294 (604)
Q Consensus       230 ~ss--DWq~RKAAAeaL~~la~~~d~~~L~se-~~S~I~~LE~-cRfDKVk~VR~am~eALq~wK~Ia~  294 (604)
                       ..  +...|++|+.+|..|+...+...+..+ ...+|..|=. +.-|+=+.||.+|..|+..-+++..
T Consensus       807 -~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~  874 (876)
T 1qgr_A          807 -DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN  874 (876)
T ss_dssp             -CSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhc
Confidence             34  669999999999999988864145555 3445554444 6667778999999999999888753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.68  E-value=6.5e-07  Score=88.01  Aligned_cols=254  Identities=10%  Similarity=0.074  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHhhcC-----CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHHHHHHHhhccCCC
Q 007426           24 KSAMKALKSYVKDLD-----SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSIMTTITKTLASSA   97 (604)
Q Consensus        24 ~iA~~eLesiak~Ld-----~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KImstIVRRLsDsd   97 (604)
                      +.+..-|-.|++..-     ++-+|.++.++.+.. .+..+|+.++..|+.++... +..+.||++.|+..+++-|.|..
T Consensus       107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~  185 (462)
T 1ibr_B          107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE  185 (462)
T ss_dssp             CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC
Confidence            446666777777642     344666666665431 02357999999999999876 67789999999999999998884


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-H
Q 007426           98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-K  176 (604)
Q Consensus        98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-r  176 (604)
                      .+..||.+..++++.+..++.+...    .......+...|.+.+......+...++-||..+++...-.+.  +.+. .
T Consensus       186 ~~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~~~~  259 (462)
T 1ibr_B          186 PSNNVKLAATNALLNSLEFTKANFD----KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME--TYMGPA  259 (462)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTHHHHT----SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT--TTTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            3345898888888887655331100    0011122455666666666677899999999999986432121  2233 5


Q ss_pred             HHHHHHHhhcCCccchh-hHHHHHHHHHHhh---------------------hhHHHHhHHHHHHHHHHHhcCC---CCC
Q 007426          177 VCQNVAGALEEKSTQTN-SHMGLVMALAKHN---------------------ALIVEAYARLLIQSGLRILNAG---PGE  231 (604)
Q Consensus       177 lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n---------------------~~iiea~g~~Ll~S~l~~L~~~---~~s  231 (604)
                      +.+-+...+++...... .-+.....++...                     ...+..+...+++..++.|.+.   ..+
T Consensus       260 l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~  339 (462)
T 1ibr_B          260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD  339 (462)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccc
Confidence            55556666665433222 2222333333331                     1134556677888888888542   345


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          232 ANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       232 sDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      ++|..|++|+++|..|+...+. .+   ...++..+...=.|.-..||+++..|+-.
T Consensus       340 ~~~~~r~~a~~~L~~l~~~~~~-~~---~~~~~~~l~~~l~~~~~~~r~aal~~l~~  392 (462)
T 1ibr_B          340 DDWNPCKAAGVCLMLLATCCED-DI---VPHVLPFIKEHIKNPDWRYRDAAVMAFGC  392 (462)
T ss_dssp             TCCSHHHHHHHHHHHHHHHTTT-TH---HHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhccH-HH---HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            7899999999999999988763 22   23455555544446778899998888754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.68  E-value=3.7e-07  Score=89.75  Aligned_cols=238  Identities=9%  Similarity=0.073  Sum_probs=160.8

Q ss_pred             chhHHHHHHHHHHHHhhc----CCCChhH-HHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH-HHHHHHHhh
Q 007426           20 ADSRKSAMKALKSYVKDL----DSKAIPL-FLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID-SIMTTITKT   92 (604)
Q Consensus        20 RDT~~iA~~eLesiak~L----d~dtlP~-FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~-KImstIVRR   92 (604)
                      .+-|..|++.|-.++.-+    +...+.. ++..|.+. .++...+|+.++..|..++..++..+.||++ .|+..++..
T Consensus       188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (462)
T 1ibr_B          188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  267 (462)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445777888888755432    2211112 23333322 2233468999999999999999999999999 999999999


Q ss_pred             ccCCCCChhhHHHHHHHHHHHHhhcC------CCCCc-----cccchhh----HHhhhchhHHhhhcc-------cchhh
Q 007426           93 LASSAGSFPLQQACSRVVPAIARYGI------DPTTP-----EDKKRHI----IHSLCKPLSDSLLGS-------QESLT  150 (604)
Q Consensus        93 LsDsdSS~~vR~AC~kvv~ALAry~i------dp~~~-----~~~~~~i----i~sl~KPL~EaL~~q-------qe~vQ  150 (604)
                      +.|.+.  .||..+...+..++....      +....     ......+    +..++..|++.|...       .-.+.
T Consensus       268 ~~~~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r  345 (462)
T 1ibr_B          268 MKSDID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC  345 (462)
T ss_dssp             HHCSSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred             HcCCch--HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHH
Confidence            987764  368888888888875431      00000     0001112    233444455555432       12578


Q ss_pred             HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCC
Q 007426          151 AGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAG  228 (604)
Q Consensus       151 sGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~  228 (604)
                      .+|+-||..+++.-     ++.++..+.+.+...|++++.+.+ +-+.++++++.-.. ..+..+...+++..+..|.  
T Consensus       346 ~~a~~~L~~l~~~~-----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~--  418 (462)
T 1ibr_B          346 KAAGVCLMLLATCC-----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK--  418 (462)
T ss_dssp             HHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG--
T ss_pred             HHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc--
Confidence            89999999999962     357788899999999998877766 66667777765332 3344566678899999998  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhcCCCc-hhhhHHHHHHHHH
Q 007426          229 PGEANSQKRLLAIQMLNFLMKSLDPRS-IFSELELIIEGME  268 (604)
Q Consensus       229 ~~ssDWq~RKAAAeaL~~la~~~d~~~-L~se~~S~I~~LE  268 (604)
                        ..++..|.+|+.+|..++....+.. ...++..++..|-
T Consensus       419 --d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll  457 (462)
T 1ibr_B          419 --DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  457 (462)
T ss_dssp             --CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence              5789999999999999998775432 1356677776654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.65  E-value=9.1e-07  Score=87.17  Aligned_cols=253  Identities=15%  Similarity=0.125  Sum_probs=165.1

Q ss_pred             CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSIMTTI   89 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KImstI   89 (604)
                      |.+.+..|+..|-.++..-        +.+.+|.++..+.+  ++...+|+.++..+..+++.. ...-...+..++..+
T Consensus       120 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  197 (450)
T 2jdq_A          120 FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL  197 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHH
T ss_pred             CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            6778899999999988742        35789999999984  223468999999999999866 333445567788888


Q ss_pred             HhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426           90 TKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF  168 (604)
Q Consensus        90 VRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~  168 (604)
                      ++.|.+.+.  .++..+..+++.|+...      .+....++ ..++.+|++.|......++..|+-+|..+....    
T Consensus       198 ~~~l~~~~~--~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----  265 (450)
T 2jdq_A          198 SWLLFVSDT--DVLADACWALSYLSDGP------NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD----  265 (450)
T ss_dssp             HHHTTCCCH--HHHHHHHHHHHHHTSSS------HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----
T ss_pred             HHHHccCCH--HHHHHHHHHHHHHHCCC------cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC----
Confidence            888887763  35666666666666331      11111222 237788999988777789999999999998752    


Q ss_pred             CCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426          169 ASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAI  241 (604)
Q Consensus       169 Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAA  241 (604)
                        ++..+     .+.+.+..+|++++...+ +-+.+++.++..+........ ..+++..++.|.    ..++..|++|+
T Consensus       266 --~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~  339 (450)
T 2jdq_A          266 --DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ----TAEFRTRKEAA  339 (450)
T ss_dssp             --HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH----HSCHHHHHHHH
T ss_pred             --hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----cCCHHHHHHHH
Confidence              22221     478889999997653333 333344444433322222211 246777888888    57999999999


Q ss_pred             HHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHH
Q 007426          242 QMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKR  291 (604)
Q Consensus       242 eaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~  291 (604)
                      .+|..++...++..+.... ..++..|-..=-++-..||..+.+||...=.
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR  390 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999998653322222111 1233333333234567899988888875443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.61  E-value=8e-07  Score=83.16  Aligned_cols=170  Identities=12%  Similarity=0.158  Sum_probs=130.0

Q ss_pred             CChHHHHHHhhhcCCchhHHHHHHHHHHHHhhc---CCCChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426            5 LSPILRQELANLDKDADSRKSAMKALKSYVKDL---DSKAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVHGANIV   79 (604)
Q Consensus         5 lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~L---d~dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvHG~~ia   79 (604)
                      |.|-+.+.|+  ++|-..|+.|+.+|..+++.-   ....+..++..|...  +++...+|..++..++.||..-|..+.
T Consensus        16 l~~~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~   93 (242)
T 2qk2_A           16 MPKDFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS   93 (242)
T ss_dssp             SCTTHHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             CCHHHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence            4454555553  678899999999999999872   122333344333221  133456899999999999998899999


Q ss_pred             ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHH
Q 007426           80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKA  159 (604)
Q Consensus        80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAA  159 (604)
                      ||+..|+..|+.+|.|+..  .||+++..++.++.....            +..++..|.++|.+++-.+...+.-+|..
T Consensus        94 ~~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~~~~~~------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~  159 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKP--NVVTALREAIDAIYASTS------------LEAQQESIVESLSNKNPSVKSETALFIAR  159 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTSC------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            9999999999999999863  589999999999985421            45688889999998888899999999999


Q ss_pred             HhccCCCCCCCHHHHHHHHHHHHHhhcCCcc
Q 007426          160 LVDSDNWRFASDEMVNKVCQNVAGALEEKST  190 (604)
Q Consensus       160 lVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~  190 (604)
                      +++..+........+..++|-+.++|+++.-
T Consensus       160 ~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~  190 (242)
T 2qk2_A          160 ALTRTQPTALNKKLLKLLTTSLVKTLNEPDP  190 (242)
T ss_dssp             HHTTCCGGGCCHHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHcCCCCccHHHHHHHHHHHHHHhcCCCh
Confidence            9887432223456778999999999987653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.54  E-value=2.3e-06  Score=88.29  Aligned_cols=263  Identities=14%  Similarity=0.084  Sum_probs=173.3

Q ss_pred             HHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCC
Q 007426            8 ILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANI   78 (604)
Q Consensus         8 ~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~i   78 (604)
                      .+-+.|..  .|.+.+..|+..|..++..        +....+|.++..+.+   +...+++.++..|..|++.. +..-
T Consensus       177 ~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          177 LFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             HHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            33444442  3788999999999999875        346789999999986   33468999999999999866 3444


Q ss_pred             cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHH
Q 007426           79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCL  157 (604)
Q Consensus        79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCL  157 (604)
                      ...+..++..+++-|.+.+.  .+|..+..+++.|+..      ..+....++. .++..|.+.|...+..++..|+-+|
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDT--ETLVDACWAISYLSDG------PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCH--HHHHHHHHHHHHHHSS------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCC------CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            55666788888888887763  3576666777777632      1111222222 4678888888887778999999999


Q ss_pred             HHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCC
Q 007426          158 KALVDSDNWRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPG  230 (604)
Q Consensus       158 AAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~  230 (604)
                      ..+...+      ++..+     .+.+.+..+|..+....+ +=+..++.|+..+...+.... ..+++..+++|.    
T Consensus       324 ~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~----  393 (530)
T 1wa5_B          324 GNIVTGN------DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE----  393 (530)
T ss_dssp             HHHTTSC------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----
T ss_pred             HHHHcCC------HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----
Confidence            9988642      22222     477889999997743332 223333344433332222211 235677788887    


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCC--CchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHHhh
Q 007426          231 EANSQKRLLAIQMLNFLMKSLDP--RSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKRIA  293 (604)
Q Consensus       231 ssDWq~RKAAAeaL~~la~~~d~--~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia  293 (604)
                      ..++..|++|+.+|..|+...++  ..+.... ..+|..|...=.++-+.||..+..||...=...
T Consensus       394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            57999999999999999865433  2221111 225555555545667889999888887654443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.35  E-value=1.4e-05  Score=82.14  Aligned_cols=252  Identities=15%  Similarity=0.112  Sum_probs=165.2

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTIT   90 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIV   90 (604)
                      |.+.+..|+..|-.++..        ++.+.+|+++..+.+.  +...+++.++..|..|+...+......+..++..++
T Consensus       173 ~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~  250 (528)
T 4b8j_A          173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALA  250 (528)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence            677888899999888754        2356899999999533  234689999999999998766555566777888899


Q ss_pred             hhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426           91 KTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA  169 (604)
Q Consensus        91 RRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A  169 (604)
                      +-|.+.+.  .++..+..+++.|+..      ..+....++. .++.+|...|......++.-|+-+|..+...      
T Consensus       251 ~lL~~~~~--~v~~~a~~aL~~l~~~------~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~------  316 (528)
T 4b8j_A          251 RLIHSNDE--EVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG------  316 (528)
T ss_dssp             HHTTCCCH--HHHHHHHHHHHHHTSS------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------
T ss_pred             HHHCCCCH--HHHHHHHHHHHHHHcC------CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC------
Confidence            98887763  3566666666665522      1111112222 3778999999988888999999999999874      


Q ss_pred             CHHHHH-----HHHHHHHHhhcCC-ccchh-hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426          170 SDEMVN-----KVCQNVAGALEEK-STQTN-SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLLAI  241 (604)
Q Consensus       170 p~elv~-----rlc~Rv~kaL~~k-s~qtk-Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKAAA  241 (604)
                      .++..+     .+.+.+..+|..+ +...+ .-..+++-|+..+...+.. ....+++..+++|.    +.++..|+.|+
T Consensus       317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~  392 (528)
T 4b8j_A          317 DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ----TAEFDIKKEAA  392 (528)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH----HSCHHHHHHHH
T ss_pred             CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh----cCCHHHHHHHH
Confidence            233222     3678888999876 43332 2233344444333222111 11235777888888    57999999999


Q ss_pred             HHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHH
Q 007426          242 QMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAK  290 (604)
Q Consensus       242 eaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK  290 (604)
                      .+|..++...++..+.... ..+|..|-..=.++-..|+..+.++|..-=
T Consensus       393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~  442 (528)
T 4b8j_A          393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL  442 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            9999998664332222111 235555555545566778887777766543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.28  E-value=4.2e-06  Score=75.73  Aligned_cols=187  Identities=14%  Similarity=0.221  Sum_probs=124.7

Q ss_pred             CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426           38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG  117 (604)
Q Consensus        38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~  117 (604)
                      +++.+|.++..+.+.+   ..+|.+++..|+.+.    .      +..+..+++.|.|++  ..||.++..+++.+.   
T Consensus        17 ~~~~~~~L~~~L~~~~---~~vR~~A~~~L~~~~----~------~~~~~~L~~~l~~~~--~~vr~~a~~aL~~~~---   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDS---YYVRRAAAYALGKIG----D------ERAVEPLIKALKDED--AWVRRAAADALGQIG---   78 (211)
T ss_dssp             CGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSC--HHHHHHHHHHHHHHC---
T ss_pred             CHhHHHHHHHHHcCCC---HHHHHHHHHHHHHhC----C------ccHHHHHHHHHcCCC--HHHHHHHHHHHHhhC---
Confidence            6778999999887443   468888888877642    2      355666777888776  347887777666553   


Q ss_pred             CCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHH
Q 007426          118 IDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMG  197 (604)
Q Consensus       118 idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~  197 (604)
                       +            .....+|.++|...+..+...|+.+|..+-+.            +..+.+.++|++++...  -..
T Consensus        79 -~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~v--r~~  131 (211)
T 3ltm_A           79 -D------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFV--RIA  131 (211)
T ss_dssp             -C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHH--HHH
T ss_pred             -C------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHH--HHH
Confidence             1            13456778888877778898888888876331            23456677888765333  344


Q ss_pred             HHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccc
Q 007426          198 LVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAY  277 (604)
Q Consensus       198 LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~  277 (604)
                      ++.+|..++.       ...++..++.|+    ..||..|.+|+++|..+-   +        ..++..|+..-.|.-+.
T Consensus       132 a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~---~--------~~~~~~L~~~l~d~~~~  189 (211)
T 3ltm_A          132 AAFALGEIGD-------ERAVEPLIKALK----DEDGWVRQSAADALGEIG---G--------ERVRAAMEKLAETGTGF  189 (211)
T ss_dssp             HHHHHHHHCC-------GGGHHHHHHHTT----CSSHHHHHHHHHHHHHHC---S--------HHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHcCC-------HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC---c--------hhHHHHHHHHHhCCCHH
Confidence            4555555542       123556667776    689999999999999862   1        23444444444477789


Q ss_pred             hhHHHHHHHHHHHH
Q 007426          278 VKGASLEALQTAKR  291 (604)
Q Consensus       278 VR~am~eALq~wK~  291 (604)
                      ||.++.+||...+.
T Consensus       190 vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          190 ARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999876543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.28  E-value=9.4e-06  Score=79.97  Aligned_cols=248  Identities=13%  Similarity=0.119  Sum_probs=155.6

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTT   88 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImst   88 (604)
                      |.+.+..|+..|..++..        .+.+.+|.|+..+.+.   ...+|++++..|..++..... ...++  ..++..
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~  153 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE---FEDVQEQAVWALGNIAGDSTM-CRDYVLDCNILPP  153 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHccCCHH-HHHHHHHCCCHHH
Confidence            567788899999888762        2367899999998753   346899999999999864211 00111  124556


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF  168 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~  168 (604)
                      +++-|.+.. +..+|..++.+++.|++... |..    ...++..++.+|.+.|......++.-|+-+|..+.+..+-  
T Consensus       154 L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~-~~~----~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~--  225 (450)
T 2jdq_A          154 LLQLFSKQN-RLTMTRNAVWALSNLCRGKS-PPP----EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND--  225 (450)
T ss_dssp             HHHHTTSCC-CHHHHHHHHHHHHHHHCCSS-SCC----CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHH--
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHHhCCCC-CCC----CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcH--
Confidence            666676432 23578899899998886531 211    1233466788889888877778899999999999875210  


Q ss_pred             CCHHHH-HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426          169 ASDEMV-NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLAIQMLN  245 (604)
Q Consensus       169 Ap~elv-~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~  245 (604)
                      ....++ ..+.+.+..+|+++..... +-+..++.|+..+........ ..+++..+++|+    ..+|..|++|+.+|.
T Consensus       226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~vr~~a~~~L~  301 (450)
T 2jdq_A          226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS----SPKESIKKEACWTIS  301 (450)
T ss_dssp             HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence            001111 1378889999987654332 233444444444332211111 135777778887    679999999999999


Q ss_pred             HHHhhcCCCchh-----hhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          246 FLMKSLDPRSIF-----SELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       246 ~la~~~d~~~L~-----se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      .|+...+ ..+.     ..+..+++.|..    .-+.||..+..||.
T Consensus       302 ~l~~~~~-~~~~~~~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~  343 (450)
T 2jdq_A          302 NITAGNR-AQIQTVIDANIFPALISILQT----AEFRTRKEAAWAIT  343 (450)
T ss_dssp             HHTTSCH-HHHHHHHHTTHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred             HHHcCCH-HHHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHH
Confidence            9874221 1111     123456666664    34568877766664

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.28  E-value=7e-06  Score=84.73  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=157.6

Q ss_pred             CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCC---CCcccHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGA---NIVPQIDSIMT   87 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~---~iaPhL~KIms   87 (604)
                      |.+.+..|+..|-.++..-        +.+.+|.|+..+.+.   ...+|+.++..|..|+.....   .++  -..++.
T Consensus       144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~~~~~~~~~~~--~~~~l~  218 (530)
T 1wa5_B          144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG---SVEVKEQAIWALGNVAGDSTDYRDYVL--QCNAME  218 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTCHH
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCccchHHHH--HcCcHH
Confidence            5667888999998887632        367899999999853   345899999999999853211   011  013456


Q ss_pred             HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      .+++-|.+.+  ..++..+..+++.|++... |..    ...++..++.+|...|......++.-|+.||..+.+.    
T Consensus       219 ~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~-~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----  287 (530)
T 1wa5_B          219 PILGLFNSNK--PSLIRTATWTLSNLCRGKK-PQP----DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG----  287 (530)
T ss_dssp             HHHHGGGSCC--HHHHHHHHHHHHHHHCCSS-SCC----CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----
T ss_pred             HHHHHhccCC--HHHHHHHHHHHHHHhCCCC-CCC----cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----
Confidence            6777777744  3467777778888875421 211    2334556788899988888788999999999999875    


Q ss_pred             CCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426          168 FASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLA  240 (604)
Q Consensus       168 ~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAA  240 (604)
                        +++...     .+++.+..+|+.+..... .-+.+++.++..++....... ..+++..+.+|.    ..+|..|++|
T Consensus       288 --~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~vr~~A  361 (530)
T 1wa5_B          288 --PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS----SPKENIKKEA  361 (530)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHH
T ss_pred             --CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc----CCCHHHHHHH
Confidence              333333     467889999987653332 223444444443332211111 135777778888    6799999999


Q ss_pred             HHHHHHHHhhcCCCchh-----hhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          241 IQMLNFLMKSLDPRSIF-----SELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       241 AeaL~~la~~~d~~~L~-----se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      +.+|..|+... ...+.     ..+..+++.|..    .-..||..+..||..
T Consensus       362 ~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~aL~~  409 (530)
T 1wa5_B          362 CWTISNITAGN-TEQIQAVIDANLIPPLVKLLEV----AEYKTKKEACWAISN  409 (530)
T ss_dssp             HHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHH----SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHH
Confidence            99999987422 12221     123556666754    345677777777643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.20  E-value=3.3e-05  Score=69.84  Aligned_cols=211  Identities=14%  Similarity=0.160  Sum_probs=141.2

Q ss_pred             CchhHHHHHHHHHHHHhhcC--------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHH
Q 007426           19 DADSRKSAMKALKSYVKDLD--------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTT   88 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld--------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImst   88 (604)
                      |.+.+..|+..|..++..-+        .+.+|.++..+.+.+   ..++.+++..+..|+..+... ..++  ..++..
T Consensus        15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~   90 (252)
T 4hxt_A           15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPDEA-IKAIVDAGGVEV   90 (252)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHH
Confidence            67788889999988887432        467999999988654   458999999999988642211 1111  125667


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      +++-|.+++  ..+|..|..+++.|+..-      .+....++. .++.+|++.|...+..++..|+-||..+...    
T Consensus        91 l~~ll~~~~--~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~----  158 (252)
T 4hxt_A           91 LVKLLTSTD--SEVQKEAARALANIASGP------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----  158 (252)
T ss_dssp             HHHHTTCSS--HHHHHHHHHHHHHHTTSC------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----
T ss_pred             HHHHHcCCC--HHHHHHHHHHHHHHHcCC------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----
Confidence            778787765  357888888888887421      111222222 3688899999888888999999999999874    


Q ss_pred             CCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426          168 FASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRLLA  240 (604)
Q Consensus       168 ~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RKAA  240 (604)
                        +++...     .+.+.+..+|++++...+ .-+..++.|+..++.....-. ..+++..+++|.    ++|+..|+.|
T Consensus       159 --~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~~a  232 (252)
T 4hxt_A          159 --PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT----STDSEVQKEA  232 (252)
T ss_dssp             --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG----CSCHHHHHHH
T ss_pred             --CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC----CCcHHHHHHH
Confidence              222222     377889999997654333 233344444443333221111 125677788888    6899999999


Q ss_pred             HHHHHHHHhhc
Q 007426          241 IQMLNFLMKSL  251 (604)
Q Consensus       241 AeaL~~la~~~  251 (604)
                      +.+|..|....
T Consensus       233 ~~~L~~l~~~~  243 (252)
T 4hxt_A          233 QRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHcCC
Confidence            99999987544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.19  E-value=5.7e-06  Score=74.30  Aligned_cols=186  Identities=14%  Similarity=0.220  Sum_probs=104.8

Q ss_pred             hcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHh
Q 007426           36 DLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIAR  115 (604)
Q Consensus        36 ~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAr  115 (604)
                      .+++...|.|+..+.+.+.   .+|.+++..|+.+.    .      +..+..+++.|.|++.  .+|.++..+++.+. 
T Consensus        10 ~~~~~~~~~~i~~L~~~~~---~vr~~A~~~L~~~~----~------~~~~~~L~~~l~~~~~--~vr~~a~~~L~~~~-   73 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQDDSY---YVRRAAAYALGKIG----D------ERAVEPLIKALKDEDA--WVRRAAADALGQIG-   73 (201)
T ss_dssp             CCCHHHHHHHHHHTTCSCH---HHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHC-
T ss_pred             ccCCcchHHHHHHhcCCCH---HHHHHHHHHHHhcC----C------hhHHHHHHHHHcCCCH--HHHHHHHHHHHhhC-
Confidence            3455567777777765443   46777777766542    1      2345556666766652  35666555554442 


Q ss_pred             hcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhH
Q 007426          116 YGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSH  195 (604)
Q Consensus       116 y~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAh  195 (604)
                         +            .....+|.++|...+..+...|+-+|..+-+.            +..+.+.++|++++...  -
T Consensus        74 ---~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~v--r  124 (201)
T 3ltj_A           74 ---D------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFV--R  124 (201)
T ss_dssp             ---C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHH--H
T ss_pred             ---C------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHH--H
Confidence               1            12445666677666666777777777665321            13344556666654222  2


Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCc
Q 007426          196 MGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQM  275 (604)
Q Consensus       196 l~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKV  275 (604)
                      ..++.+|...+.       ...++..++.|.    ..||..|.+|+++|..+-   +        ...+..|...--|.-
T Consensus       125 ~~a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~---~--------~~~~~~L~~~l~d~~  182 (201)
T 3ltj_A          125 IAAAFALGEIGD-------ERAVEPLIKALK----DEDGWVRQSAADALGEIG---G--------ERVRAAMEKLAETGT  182 (201)
T ss_dssp             HHHHHHHHHHTC-------GGGHHHHHHHTT----CSSHHHHHHHHHHHHHHC---S--------HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC-------HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC---c--------hhHHHHHHHHHhCCC
Confidence            344444444432       123455566666    568888888888888761   1        122333333334556


Q ss_pred             cchhHHHHHHHHH
Q 007426          276 AYVKGASLEALQT  288 (604)
Q Consensus       276 k~VR~am~eALq~  288 (604)
                      +.||.++.+||..
T Consensus       183 ~~vr~~A~~aL~~  195 (201)
T 3ltj_A          183 GFARKVAVNYLET  195 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7788888877764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.15  E-value=3.9e-05  Score=78.77  Aligned_cols=243  Identities=12%  Similarity=0.138  Sum_probs=156.4

Q ss_pred             chhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHHHHH
Q 007426           20 ADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIMTTI   89 (604)
Q Consensus        20 RDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KImstI   89 (604)
                      .+.+..|+..|..++..        ++...||.|+..+.+.   ...+|++++..|..|+..+.. ....+-  .++..+
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~L  207 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS---SDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPL  207 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHH
Confidence            67788899999988874        2346899999988863   346899999999999864321 111111  245567


Q ss_pred             HhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426           90 TKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA  169 (604)
Q Consensus        90 VRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A  169 (604)
                      ++-|.+.. +..++..+..++..|+...  |..    ...++..++.+|...|......++.-|+.||..+.+.      
T Consensus       208 l~lL~~~~-~~~v~~~a~~~L~~L~~~~--~~~----~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~------  274 (528)
T 4b8j_A          208 LAQLNEHT-KLSMLRNATWTLSNFCRGK--PQP----SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG------  274 (528)
T ss_dssp             HHTCCTTC-CHHHHHHHHHHHHHHHCSS--SCC----CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS------
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHHcCC--CCC----cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC------
Confidence            77774332 2346777777888887542  221    2234456778888888887788999999999999875      


Q ss_pred             CHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCC-CHHHHHHHH
Q 007426          170 SDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEA-NSQKRLLAI  241 (604)
Q Consensus       170 p~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ss-DWq~RKAAA  241 (604)
                      +++..+     .+++.+..+|..++...+ .-+.+++.|+..+........ ..+++..+.+|.    +. ++..|+.|+
T Consensus       275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~~~~~v~~~A~  350 (528)
T 4b8j_A          275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QNLKKSIKKEAC  350 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CCCcHHHHHHHH
Confidence            333322     368899999998753333 334444454443332222111 235777788888    56 999999999


Q ss_pred             HHHHHHHhhcCCCchhh-----hHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          242 QMLNFLMKSLDPRSIFS-----ELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       242 eaL~~la~~~d~~~L~s-----e~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      .+|..|+.. +...+..     .+...++.|+.-    -..||..+..||..
T Consensus       351 ~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~n  397 (528)
T 4b8j_A          351 WTISNITAG-NKDQIQAVINAGIIGPLVNLLQTA----EFDIKKEAAWAISN  397 (528)
T ss_dssp             HHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence            999998742 2221211     235566777653    34577766666543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.14  E-value=3.2e-05  Score=69.98  Aligned_cols=231  Identities=14%  Similarity=0.136  Sum_probs=141.8

Q ss_pred             CChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC
Q 007426           40 KAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI  118 (604)
Q Consensus        40 dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i  118 (604)
                      +.||.++..+.+.+   ..++.+++..+..++..+.......+ ..++..+++-|.+++  ..+|..+..+++.|+..  
T Consensus         2 ~~i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~--   74 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD---SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASG--   74 (252)
T ss_dssp             CHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTS--
T ss_pred             CcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcC--
Confidence            45888888887654   45799999999999876642211111 136777888888876  34688888888877732  


Q ss_pred             CCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hH
Q 007426          119 DPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SH  195 (604)
Q Consensus       119 dp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ah  195 (604)
                          ..+....++. ..+.+|++.|......++.-|+.+|..+.....  ..-..++. ...+.+..+|++...... .-
T Consensus        75 ----~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a  148 (252)
T 4hxt_A           75 ----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTSTDSEVQKEA  148 (252)
T ss_dssp             ----CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             ----ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence                1122222222 267889999988888899999999999986421  00111222 368889999997764443 23


Q ss_pred             HHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCC
Q 007426          196 MGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSD  273 (604)
Q Consensus       196 l~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfD  273 (604)
                      +.+++.|+..++..... .-...++..+++|.    +.++..|..|+.+|..|+.. ++....... ..++..|-..=-+
T Consensus       149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC----CCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCC
Confidence            33444444433222111 11225777788888    68999999999999998742 222111111 2234444433334


Q ss_pred             CccchhHHHHHHHHH
Q 007426          274 QMAYVKGASLEALQT  288 (604)
Q Consensus       274 KVk~VR~am~eALq~  288 (604)
                      .-+.||..+..+|.-
T Consensus       224 ~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          224 TDSEVQKEAQRALEN  238 (252)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH
Confidence            556777777776654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.13  E-value=1.8e-05  Score=72.67  Aligned_cols=208  Identities=14%  Similarity=0.139  Sum_probs=135.8

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHHHH
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIMTT   88 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KImst   88 (604)
                      |.+.+..|+..|..++..        ++.+.||.++..+.+.+   ..++.+++..+..++....... ..+-  .++..
T Consensus        25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~  100 (252)
T 4db8_A           25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQI-QAVIDAGALPA  100 (252)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHH
Confidence            788999999999665432        25678999999998654   4589999999999986322111 1111  26777


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      +++-|.+++  ..+|..|..+++.|+..      .+.....++. .++.+|.+.|......++.-|+.||..+...    
T Consensus       101 L~~lL~~~~--~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----  168 (252)
T 4db8_A          101 LVQLLSSPN--EQILQEALWALSNIASG------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----  168 (252)
T ss_dssp             HHHGGGCSC--HHHHHHHHHHHHHHTTS------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----
T ss_pred             HHHHHcCCC--HHHHHHHHHHHHHhhcC------CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----
Confidence            888888765  34788888888888632      1111122332 2778899999887778999999999999875    


Q ss_pred             CCCHHHH-----HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHH
Q 007426          168 FASDEMV-----NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLA  240 (604)
Q Consensus       168 ~Ap~elv-----~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAA  240 (604)
                        +++..     ..+.+.+..+|++++...+ .-+..++.|+..++........ .+++..++.|.    +.+...|+.|
T Consensus       169 --~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~A  242 (252)
T 4db8_A          169 --GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS----HENEKIQKEA  242 (252)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT----CSSSHHHHTH
T ss_pred             --ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC----CCCHHHHHHH
Confidence              23322     2367889999998754333 2233344444333322111111 14555556665    7899999999


Q ss_pred             HHHHHHHH
Q 007426          241 IQMLNFLM  248 (604)
Q Consensus       241 AeaL~~la  248 (604)
                      +.+|..|+
T Consensus       243 ~~~L~~l~  250 (252)
T 4db8_A          243 QEALEKLQ  250 (252)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHh
Confidence            99998764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.10  E-value=2.5e-05  Score=70.69  Aligned_cols=173  Identities=15%  Similarity=0.178  Sum_probs=120.4

Q ss_pred             cCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426           17 DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS   96 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs   96 (604)
                      +.|++.|..|+..|..+-   +++.+|.++..+.+.   ...+|..++..|+.+.    +      +..+..+++.|.|+
T Consensus        30 ~~~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~~~   93 (211)
T 3ltm_A           30 DDSYYVRRAAAYALGKIG---DERAVEPLIKALKDE---DAWVRRAAADALGQIG----D------ERAVEPLIKALKDE   93 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCS---CHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHHHHhC---CccHHHHHHHHHcCC---CHHHHHHHHHHHHhhC----C------HHHHHHHHHHHcCC
Confidence            447778888888887764   467899999988754   3468999998887653    1      34566677788887


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHH
Q 007426           97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNK  176 (604)
Q Consensus        97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~r  176 (604)
                      +.  .||.++..+++.+..                ...+.+|.+.|...+..|...|+.+|..+=+.            +
T Consensus        94 ~~--~vr~~a~~aL~~~~~----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~  143 (211)
T 3ltm_A           94 DG--WVRQSAAVALGQIGD----------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------R  143 (211)
T ss_dssp             SH--HHHHHHHHHHHHHCC----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------G
T ss_pred             CH--HHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------------H
Confidence            73  478888777766531                12456788888777778999999999887321            2


Q ss_pred             HHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426          177 VCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM  248 (604)
Q Consensus       177 lc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la  248 (604)
                      ..+.+..+|++++..  ....++.+|...+.       ...+....+.|+    ..|+..|.+|+++|..+-
T Consensus       144 ~~~~L~~~l~d~~~~--vr~~a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          144 AVEPLIKALKDEDGW--VRQSAADALGEIGG-------ERVRAAMEKLAE----TGTGFARKVAVNYLETHK  202 (211)
T ss_dssp             GHHHHHHHTTCSSHH--HHHHHHHHHHHHCS-------HHHHHHHHHHHH----HCCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHcCCCHH--HHHHHHHHHHHhCc-------hhHHHHHHHHHh----CCCHHHHHHHHHHHHhcC
Confidence            345567788776532  23455556555543       334566677777    579999999999999864

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.06  E-value=0.00011  Score=69.24  Aligned_cols=212  Identities=12%  Similarity=0.144  Sum_probs=137.5

Q ss_pred             CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHh-hccCC
Q 007426           18 KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITK-TLASS   96 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVR-RLsDs   96 (604)
                      .|...|..|+..|-.+.   +++.+|.++..+.+.+   ..+|..++..|+.+..     ....++.++..+.. -+.|+
T Consensus        35 ~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~d~~---~~vR~~A~~aL~~l~~-----~~~~~~~l~~~L~~~~~~d~  103 (280)
T 1oyz_A           35 HNSLKRISSARVLQLRG---GQDAVRLAIEFCSDKN---YIRRDIGAFILGQIKI-----CKKCEDNVFNILNNMALNDK  103 (280)
T ss_dssp             SSHHHHHHHHHHHHHHC---CHHHHHHHHHHHTCSS---HHHHHHHHHHHHHSCC-----CTTTHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHccC---CchHHHHHHHHHcCCC---HHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHhcCC
Confidence            36677888999998875   5667999998887543   4589988887765531     11234555555553 24666


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHH
Q 007426           97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNK  176 (604)
Q Consensus        97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~r  176 (604)
                      +.  .||.++..+.+.+....  |.        ....++.+|..+|...+..|...|+.+|..+-+.            +
T Consensus       104 ~~--~vr~~a~~aL~~l~~~~--~~--------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------------~  159 (280)
T 1oyz_A          104 SA--CVRATAIESTAQRCKKN--PI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------------A  159 (280)
T ss_dssp             CH--HHHHHHHHHHHHHHHHC--GG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------C
T ss_pred             CH--HHHHHHHHHHHHHhccC--Cc--------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------------H
Confidence            53  47999888888887431  10        1234678888889888888999999998865431            1


Q ss_pred             HHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch
Q 007426          177 VCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI  256 (604)
Q Consensus       177 lc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L  256 (604)
                      ..+.+..+|+++...-  -..++.+|...+.     .....++..++.|.    ..|+..|+.|+++|..+.   ++.  
T Consensus       160 ~~~~L~~~l~d~~~~v--r~~a~~aL~~~~~-----~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~---~~~--  223 (280)
T 1oyz_A          160 TIPLLINLLKDPNGDV--RNWAAFAININKY-----DNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRK---DKR--  223 (280)
T ss_dssp             CHHHHHHHHTCSSHHH--HHHHHHHHHHHTC-----CCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTT---CGG--
T ss_pred             HHHHHHHHHcCCCHHH--HHHHHHHHHhhcc-----CcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhC---CHh--
Confidence            4455677888765332  2334444444421     12344666677777    689999999999998863   222  


Q ss_pred             hhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          257 FSELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       257 ~se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                        -+..+++.|+.      +.||..+.+||..
T Consensus       224 --~~~~L~~~l~d------~~vr~~a~~aL~~  247 (280)
T 1oyz_A          224 --VLSVLCDELKK------NTVYDDIIEAAGE  247 (280)
T ss_dssp             --GHHHHHHHHTS------SSCCHHHHHHHHH
T ss_pred             --hHHHHHHHhcC------ccHHHHHHHHHHh
Confidence              34556666654      3389888777753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.05  E-value=8.4e-05  Score=79.23  Aligned_cols=260  Identities=11%  Similarity=0.130  Sum_probs=154.0

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChh--HHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCC-CcccH
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIP--LFLAQVSET-KENGSVSGEYTISLYEVLARVHGAN-IVPQI   82 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP--~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~-iaPhL   82 (604)
                      |.+++.|.  +.|+.-|+.|+..|-++.+ .+++.++  .|+..|..- .++...|+..++.+|..++.-.+.. ..+..
T Consensus       124 ~~l~~~L~--d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~  200 (591)
T 2vgl_B          124 EPLRKCLK--DEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN  200 (591)
T ss_dssp             HHHHHHSS--CSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred             HHHHHHcC--CCChHHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence            44555554  4467788999999999998 6787776  244443332 2334568999999999998877655 67777


Q ss_pred             HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc
Q 007426           83 DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD  162 (604)
Q Consensus        83 ~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE  162 (604)
                      +..+..+++.|.+.+.     -+-...+..|+.|...  ..     .-...++.+|...|.+.+..|...|+-|+..+.+
T Consensus       201 ~~~~~~Ll~~l~~~~~-----~~q~~il~~l~~l~~~--~~-----~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          201 PQNINKLLTALNECTE-----WGQIFILDCLSNYNPK--DD-----REAQSICERVTPRLSHANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             HHHHHHHHHHHHHCCH-----HHHHHHHHHHHTSCCC--SH-----HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCCCCc-----hHHHHHHHHHHHhCCC--Ch-----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence            7888888888877652     2344667777777531  11     1124567777778888888889988888888754


Q ss_pred             cC--CCCCCCHHHHHHHHHHHHHhhcC-CccchhhHHHHHHHHHHhhhhHHHHh--------------------------
Q 007426          163 SD--NWRFASDEMVNKVCQNVAGALEE-KSTQTNSHMGLVMALAKHNALIVEAY--------------------------  213 (604)
Q Consensus       163 s~--nwr~Ap~elv~rlc~Rv~kaL~~-ks~qtkAhl~LV~ALs~~n~~iiea~--------------------------  213 (604)
                      .-  +. ..-..++.++.+.+..++.. +..+..|+- .+.-+++..+.++..+                          
T Consensus       269 ~~~~~~-~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~-~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~  346 (591)
T 2vgl_B          269 LLPKDS-DYYNMLLKKLAPPLVTLLSGEPEVQYVALR-NINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA  346 (591)
T ss_dssp             SCCBTT-BSHHHHHHHTHHHHHHHTTSCHHHHHHHHH-HHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred             ccCCCH-HHHHHHHHHHHHHHHHHhcCCccHHHHHHH-HHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence            21  10 01111233444444444442 222222322 2233333333322211                          


Q ss_pred             ----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          214 ----ARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       214 ----g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                          ...+++-..+.+.    ..||..|+.|+.+|..++...     ......|+..|=..=-|+...|+..+..   .-
T Consensus       347 ~~~nv~~iv~~L~~~l~----~~d~~~r~~~v~aI~~la~~~-----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~---~l  414 (591)
T 2vgl_B          347 SQANIAQVLAELKEYAT----EVDVDFVRKAVRAIGRCAIKV-----EQSAERCVSTLLDLIQTKVNYVVQEAIV---VI  414 (591)
T ss_dssp             CSSTHHHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHTCCHHHHHHHHH---HH
T ss_pred             ChhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhC-----hhHHHHHHHHHHHHHcccchHHHHHHHH---HH
Confidence                1123444445555    679999999999999987432     2334556655544444667777765544   34


Q ss_pred             HHhhhc
Q 007426          290 KRIAAE  295 (604)
Q Consensus       290 K~Ia~~  295 (604)
                      +.|..+
T Consensus       415 ~~ii~~  420 (591)
T 2vgl_B          415 RDIFRK  420 (591)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            455443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.00014  Score=70.04  Aligned_cols=221  Identities=10%  Similarity=0.069  Sum_probs=125.7

Q ss_pred             CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC-----CCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 007426           38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHG-----ANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPA  112 (604)
Q Consensus        38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG-----~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~A  112 (604)
                      |...|| |-.+|.+...-   .|++++-=+..+.....     +...+.+.+++..+-++|.|+.  +.|.....+++.+
T Consensus         8 d~sklp-l~e~l~sk~WK---~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN--~~v~~~al~~l~~   81 (278)
T 4ffb_C            8 DYTTLP-LEERLTYKLWK---ARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN--VVAQEQAIVALNS   81 (278)
T ss_dssp             ---CCC-HHHHTTCSSHH---HHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS--HHHHHHHHHHHHH
T ss_pred             hhhcCC-HHHhcccCcHH---HHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHH
Confidence            455688 66777755542   68888876655555443     3344557777788888998887  3466777778888


Q ss_pred             HHhhcCCCCCccccchhhHHhhhchhHHh-hhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccc
Q 007426          113 IARYGIDPTTPEDKKRHIIHSLCKPLSDS-LLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQ  191 (604)
Q Consensus       113 LAry~idp~~~~~~~~~ii~sl~KPL~Ea-L~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~q  191 (604)
                      ++..+.............+..++-+|+|= |+.....+-.-|--||-++++...   ....++    .-+..+|+.++-+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~---~~~~~~----e~l~~~l~~Knpk  154 (278)
T 4ffb_C           82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT---SITQSV----ELVIPFFEKKLPK  154 (278)
T ss_dssp             HHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS---SSHHHH----HHHGGGGGCSCHH
T ss_pred             HHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC---cHHHHH----HHHHHHHhccCHH
Confidence            88654422222222223445566777774 555555553334445555666532   233333    4456788888766


Q ss_pred             hh--hHHHHHHHHHHhhhhHHH--HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCC-------chhhhH
Q 007426          192 TN--SHMGLVMALAKHNALIVE--AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPR-------SIFSEL  260 (604)
Q Consensus       192 tk--Ahl~LV~ALs~~n~~iie--a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~-------~L~se~  260 (604)
                      .+  +..-|...|...+..++.  .....++..+..+|+    ..|-..|.+|.+++..++..++..       .+...+
T Consensus       155 v~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~----d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk  230 (278)
T 4ffb_C          155 LIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG----HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK  230 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT----CSSHHHHHHHHHHHHHHHTC-----------CTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC
Confidence            65  233344444444333222  222345556666777    789999999999999999888632       234445


Q ss_pred             HHHHHHHHhccCCCcc
Q 007426          261 ELIIEGMENCQSDQMA  276 (604)
Q Consensus       261 ~S~I~~LE~cRfDKVk  276 (604)
                      ..-++.||. .|+|++
T Consensus       231 p~~~k~le~-~f~k~~  245 (278)
T 4ffb_C          231 PIQVKDLHK-LFAKVG  245 (278)
T ss_dssp             HHHHHHHHH-HHSCCC
T ss_pred             HHHHHHHHH-HHHhcC
Confidence            566666664 366664

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.03  E-value=8.2e-05  Score=71.98  Aligned_cols=205  Identities=13%  Similarity=0.118  Sum_probs=133.1

Q ss_pred             CCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHH-HHhhcCCCCCccccchhhHHhhhchhHHhh-hcccchhhHHHH
Q 007426           77 NIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPA-IARYGIDPTTPEDKKRHIIHSLCKPLSDSL-LGSQESLTAGAA  154 (604)
Q Consensus        77 ~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~A-LAry~idp~~~~~~~~~ii~sl~KPL~EaL-~~qqe~vQsGAA  154 (604)
                      .|.+.||+   ..-..|.+++  ..-|.+-...+.. +..-+.+-.....+    +..+++-|...| ...|-.|...|+
T Consensus        12 ~i~~kl~~---~f~~~l~s~~--w~eRk~al~~L~~~~~~~~~~i~~~~~~----~~~~~~~L~~~l~~D~n~~v~~~A~   82 (249)
T 2qk1_A           12 TILDKLPK---DFQERITSSK--WKDRVEALEEFWDSVLSQTKKLKSTSQN----YSNLLGIYGHIIQKDANIQAVALAA   82 (249)
T ss_dssp             CCGGGSCT---THHHHHTCSS--HHHHHHHHHHHHHHTGGGCCCBCCTTCC----CHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             hhhhhCCh---hHHHHhhcCC--HHHHHHHHHHHHHHHHhcCCccccCccc----HHHHHHHHHHHhccCCCHHHHHHHH
Confidence            46666666   5566676665  2244444444444 33111110000111    234455556677 455667889999


Q ss_pred             HHHHHHhccCC-CCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHH-hhhhHHHHhHHHHHHHHHHHhcCCCCC
Q 007426          155 LCLKALVDSDN-WRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAK-HNALIVEAYARLLIQSGLRILNAGPGE  231 (604)
Q Consensus       155 LCLAAlVEs~n-wr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~-~n~~iiea~g~~Ll~S~l~~L~~~~~s  231 (604)
                      -||..+.+.-. ..|. ......+.|.+...|+++...-+ +....+-++.+ .++.....|...++....+.|+    +
T Consensus        83 ~al~~la~~l~~~~f~-~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~----~  157 (249)
T 2qk1_A           83 QSVELICDKLKTPGFS-KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK----H  157 (249)
T ss_dssp             HHHHHHHHHHCTTTSC-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT----C
T ss_pred             HHHHHHHHhccccccc-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc----C
Confidence            99999987543 3332 15667799999999999763333 23333444444 3333322346778888888888    6


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCC--CchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426          232 ANSQKRLLAIQMLNFLMKSLDP--RSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE  295 (604)
Q Consensus       232 sDWq~RKAAAeaL~~la~~~d~--~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~  295 (604)
                      .+|+.|.+|..+|..++.....  ..+..++ ..++..|-.+=.|.-+.||+++.++|-+--.+.|+
T Consensus       158 k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          158 KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence            7999999999999999977642  3455677 78888888888999999999999999987766554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.94  E-value=6.8e-05  Score=67.26  Aligned_cols=170  Identities=15%  Similarity=0.184  Sum_probs=117.9

Q ss_pred             CchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCC
Q 007426           19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAG   98 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdS   98 (604)
                      |++.|..|+..|..+-   +++.+|.++..+.+.+   ..+|..++..|+.+.    +      +..+..+++.|.|++.
T Consensus        27 ~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~---~~vr~~a~~~L~~~~----~------~~~~~~L~~~l~d~~~   90 (201)
T 3ltj_A           27 SYYVRRAAAYALGKIG---DERAVEPLIKALKDED---AWVRRAAADALGQIG----D------ERAVEPLIKALKDEDG   90 (201)
T ss_dssp             CHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSSH
T ss_pred             CHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCC---HHHHHHHHHHHHhhC----C------HHHHHHHHHHHcCCCH
Confidence            5677788888887764   3578999999886443   468999998887652    2      2456667777888763


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q 007426           99 SFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVC  178 (604)
Q Consensus        99 S~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc  178 (604)
                        .||.++..+++.+.    +            .....+|.++|...+..|...|+.+|+.+-+.            +..
T Consensus        91 --~vr~~a~~aL~~~~----~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~  140 (201)
T 3ltj_A           91 --WVRQSAAVALGQIG----D------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------RAV  140 (201)
T ss_dssp             --HHHHHHHHHHHHHC----C------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------------GGH
T ss_pred             --HHHHHHHHHHHHhC----c------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------------HHH
Confidence              46887777766653    1            12556677888777778999999999887431            244


Q ss_pred             HHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 007426          179 QNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFL  247 (604)
Q Consensus       179 ~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~l  247 (604)
                      +.+..+|++++..  .-..++.+|...+.       ...+....+.|+    ..+|..|.+|+++|..|
T Consensus       141 ~~L~~~l~d~~~~--vr~~A~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          141 EPLIKALKDEDGW--VRQSAADALGEIGG-------ERVRAAMEKLAE----TGTGFARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHHTTCSSHH--HHHHHHHHHHHHCS-------HHHHHHHHHHHH----HCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHH--HHHHHHHHHHHhCc-------hhHHHHHHHHHh----CCCHHHHHHHHHHHHHH
Confidence            5567788876432  23555556666542       334566677777    57999999999999875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.86  E-value=0.00035  Score=64.07  Aligned_cols=230  Identities=14%  Similarity=0.142  Sum_probs=143.7

Q ss_pred             CCChhHHHhhhccCCCCCCCchhhHHHHH-HHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426           39 SKAIPLFLAQVSETKENGSVSGEYTISLY-EVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQQACSRVVPAIARY  116 (604)
Q Consensus        39 ~dtlP~FLscV~dtd~~~s~vRke~I~Ll-e~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry  116 (604)
                      ...+|.|...|.+.+.   .++.+++..+ ..++. +.......+ ..++..+++-|.+++  ..+|..+..+++.|+..
T Consensus        11 ~~~~~~~~~~L~s~~~---~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~   84 (252)
T 4db8_A           11 GSELPQMTQQLNSDDM---QEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASG   84 (252)
T ss_dssp             TCSHHHHHHHHHSSCS---SHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHcCCCH---HHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcC
Confidence            4468999999986654   4788888888 44554 322111111 135677888888776  34677777777777732


Q ss_pred             cCCCCCccccchhhHHh-hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-
Q 007426          117 GIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN-  193 (604)
Q Consensus       117 ~idp~~~~~~~~~ii~s-l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-  193 (604)
                            ..+....++.. .+.+|.+.|...+..++.-|+.+|..+.+....  .-..++. .+.+.+..+|++++.... 
T Consensus        85 ------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~  156 (252)
T 4db8_A           85 ------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSSPNEQILQ  156 (252)
T ss_dssp             ------CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred             ------CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch--HHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence                  11222333322 678899999888888999999999999775210  0012222 378889999988754443 


Q ss_pred             hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhcc
Q 007426          194 SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQ  271 (604)
Q Consensus       194 Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cR  271 (604)
                      .-+.+++.|+..++..... .-..+++..+++|.    +.+...|..|+.+|..|+.. ++....... ..++..|...=
T Consensus       157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll  231 (252)
T 4db8_A          157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQ  231 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG----CSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHTTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC----CCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHh
Confidence            2333444444433222111 11235777888888    67999999999999998632 222121111 23566666666


Q ss_pred             CCCccchhHHHHHHHH
Q 007426          272 SDQMAYVKGASLEALQ  287 (604)
Q Consensus       272 fDKVk~VR~am~eALq  287 (604)
                      .+.-+.||..+..||.
T Consensus       232 ~~~~~~v~~~A~~~L~  247 (252)
T 4db8_A          232 SHENEKIQKEAQEALE  247 (252)
T ss_dssp             TCSSSHHHHTHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            6677788888887774

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.79  E-value=0.0025  Score=66.62  Aligned_cols=253  Identities=13%  Similarity=0.099  Sum_probs=147.5

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCC--CchhhHHHHHHHHHHHhCCC-CcccHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGS--VSGEYTISLYEVLARVHGAN-IVPQIDSIMT   87 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s--~vRke~I~Lle~LArvHG~~-iaPhL~KIms   87 (604)
                      |.+.+..|+..|-.|+.+        ++...+|+++..+...+....  ...+.+...+..+++-.... -.-.+..++.
T Consensus       175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp  254 (529)
T 3tpo_A          175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP  254 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHH
Confidence            778888999999888753        357789999999986654321  23455555566555422111 2223467888


Q ss_pred             HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426           88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW  166 (604)
Q Consensus        88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw  166 (604)
                      .+++-|.+.+..  ++..+..+++-|+..      ..+....++ ..++.+|.+.|.+....++.-|+.||..++..   
T Consensus       255 ~L~~LL~~~~~~--v~~~a~~aL~~l~~~------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~---  323 (529)
T 3tpo_A          255 TLVRLLHHNDPE--VLADSCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG---  323 (529)
T ss_dssp             HHHHHTTSSCHH--HHHHHHHHHHHHHSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS---
T ss_pred             HHHHHhcCCcHH--HHHHHHHHHHHhhhh------hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc---
Confidence            889988877642  333322333333311      112222222 23778899999998889999999999998864   


Q ss_pred             CCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007426          167 RFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEA-YARLLIQSGLRILNAGPGEANSQKRLL  239 (604)
Q Consensus       167 r~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~RKA  239 (604)
                         +++...     .+.+.+..+|+++....+ .-...++-|+..+...... .-..+++..+..|.    ++++..|+.
T Consensus       324 ---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~----~~~~~v~~~  396 (529)
T 3tpo_A          324 ---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS----KADFKTQKA  396 (529)
T ss_dssp             ---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH----SSCHHHHHH
T ss_pred             ---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc----CCCHHHHHH
Confidence               333322     255668888887654332 1222222333323221111 11235777888888    789999999


Q ss_pred             HHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          240 AIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       240 AAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                      |+-+|.-++...+.+.+.... ..+|..|=..=..+=..|+..+.+||..-
T Consensus       397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni  447 (529)
T 3tpo_A          397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI  447 (529)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999999987655433222111 12333332222233355666777776543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.67  E-value=0.0017  Score=67.86  Aligned_cols=251  Identities=14%  Similarity=0.113  Sum_probs=146.4

Q ss_pred             CCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCC--CchhhHHHHHHHHHHHhCC-CCcccHHHHH
Q 007426           18 KDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGS--VSGEYTISLYEVLARVHGA-NIVPQIDSIM   86 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s--~vRke~I~Lle~LArvHG~-~iaPhL~KIm   86 (604)
                      .|.+.+..|+..|-.|+.+        ++...+|+++..+...+....  ...+.+...+..+++-... .-.-.+..++
T Consensus       155 ~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l  234 (510)
T 3ul1_B          155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL  234 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence            3788889999999888753        257789999999986643321  2345566666666652211 1222346788


Q ss_pred             HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426           87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDN  165 (604)
Q Consensus        87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n  165 (604)
                      ..+++-|.+.+.  .++..+..++..|+..      ..+....++. .++.+|.+.|...+..++.-|+.||..++..  
T Consensus       235 p~L~~LL~~~~~--~v~~~A~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--  304 (510)
T 3ul1_B          235 PTLVRLLHHNDP--EVLADSCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--  304 (510)
T ss_dssp             HHHHHHTTCSCH--HHHHHHHHHHHHHTSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHhcCCH--HHHHHHHHHHHHHhhc------hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--
Confidence            888998887763  2343333344333311      1122222222 3778899999998889999999999998764  


Q ss_pred             CCCCCHHHHHH-----HHHHHHHhhcCCccchhhHHHHHHHHHHh---hhhHHHH-hHHHHHHHHHHHhcCCCCCCCHHH
Q 007426          166 WRFASDEMVNK-----VCQNVAGALEEKSTQTNSHMGLVMALAKH---NALIVEA-YARLLIQSGLRILNAGPGEANSQK  236 (604)
Q Consensus       166 wr~Ap~elv~r-----lc~Rv~kaL~~ks~qtkAhl~LV~ALs~~---n~~iiea-~g~~Ll~S~l~~L~~~~~ssDWq~  236 (604)
                          +++....     +.+.+..+|+++....+  -..+.+|+..   +...... .-..+++..+++|.    ++++..
T Consensus       305 ----~~~~~~~i~~~g~l~~L~~LL~~~~~~v~--~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~----~~~~~v  374 (510)
T 3ul1_B          305 ----TDEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS----KADFKT  374 (510)
T ss_dssp             ----CHHHHHHHHHTTGGGGCC-CTTCSSHHHH--HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH----SSCHHH
T ss_pred             ----CHHHHHHHhhccchHHHHHHhcCCCHHHH--HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc----CCCHHH
Confidence                3333222     44556677776543322  2233333333   2211111 11135777888888    789999


Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          237 RLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       237 RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      |+.|+.+|.-++...+...+.... ..+|..|-+.=..+=..|+..+.+||..
T Consensus       375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n  427 (510)
T 3ul1_B          375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN  427 (510)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            999999999987654432222111 2244444333333445566677666654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.63  E-value=0.00055  Score=61.26  Aligned_cols=190  Identities=12%  Similarity=0.076  Sum_probs=116.6

Q ss_pred             CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426           39 SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG  117 (604)
Q Consensus        39 ~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~  117 (604)
                      .+..++.|..+....  +..++.+++..+..++..........+ ...+..+++-|.+++.  .+|..+..+++.|+.. 
T Consensus        10 ~~~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~-   84 (210)
T 4db6_A           10 HGSELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASG-   84 (210)
T ss_dssp             ---CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTS-
T ss_pred             ccchhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcC-
Confidence            334455555555332  246899999999998853322111111 1356778888887753  4677777777777632 


Q ss_pred             CCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHH----HH-HHHHHHHHhhcCCccc
Q 007426          118 IDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEM----VN-KVCQNVAGALEEKSTQ  191 (604)
Q Consensus       118 idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~el----v~-rlc~Rv~kaL~~ks~q  191 (604)
                           ..+....++ ...+.+|++.|...+..++..|+.+|..+...      .++.    +. .+.+.+..+|++++..
T Consensus        85 -----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~ll~~~~~~  153 (210)
T 4db6_A           85 -----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG------GNEQIQAVIDAGALPALVQLLSSPNEQ  153 (210)
T ss_dssp             -----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------CHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred             -----CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC------CHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence                 111222222 22678999999888888999999999999874      2222    22 3678899999976544


Q ss_pred             hh-hHHHHHHHHHHhhhhHHH-HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426          192 TN-SHMGLVMALAKHNALIVE-AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM  248 (604)
Q Consensus       192 tk-Ahl~LV~ALs~~n~~iie-a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la  248 (604)
                      .+ .-+..+..|+..++.... ..-...++..+++|.    +.+...|+.|+.+|..|+
T Consensus       154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS----HENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG----CSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh----CCCHHHHHHHHHHHHHHh
Confidence            43 223333444443222111 111125677778887    689999999999999875

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.61  E-value=0.0019  Score=67.46  Aligned_cols=251  Identities=11%  Similarity=0.086  Sum_probs=146.8

Q ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc
Q 007426            9 LRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP   80 (604)
Q Consensus         9 ~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP   80 (604)
                      +-+.|..-+ +++-+.-|+..|-.|+..        .+...||.|+..|.+.+   ..++++|+..|.-||.-.     |
T Consensus       105 LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~---~~v~e~A~~aL~nLa~d~-----~  175 (510)
T 3ul1_B          105 FVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH---AHISEQAVWALGNIAGDG-----S  175 (510)
T ss_dssp             HHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTC-----H
T ss_pred             HHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCC-----H
Confidence            334444333 456666788888888742        25678999999997543   358999999999998421     2


Q ss_pred             cHHH------HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC--CCCccccchhhHHhhhchhHHhhhcccchhhHH
Q 007426           81 QIDS------IMTTITKTLASSAGSFPLQQACSRVVPAIARYGID--PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAG  152 (604)
Q Consensus        81 hL~K------ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id--p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsG  152 (604)
                      ....      .+..++.-|.+++.+...-.....++.+|+..+..  +..    .-..+..++.+|...|..+...++.-
T Consensus       176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~----~~~~~~~~lp~L~~LL~~~~~~v~~~  251 (510)
T 3ul1_B          176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP----PLDAVEQILPTLVRLLHHNDPEVLAD  251 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC----CHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh----HHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence            2222      24456777776653321112233344455433321  211    11223456677888888888889999


Q ss_pred             HHHHHHHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHH-HHHHHHh
Q 007426          153 AALCLKALVDSDNWRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLI-QSGLRIL  225 (604)
Q Consensus       153 AALCLAAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll-~S~l~~L  225 (604)
                      |+.||..+.+.      +++..+     .+++++..+|..++...+ .-+..++.++..+....    ..++ ..++..|
T Consensus       252 A~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~----~~i~~~g~l~~L  321 (510)
T 3ul1_B          252 SCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT----QKVIDAGALAVF  321 (510)
T ss_dssp             HHHHHHHHTSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHH----HHHHHTTGGGGC
T ss_pred             HHHHHHHHhhc------hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHH----HHHhhccchHHH
Confidence            99999999885      333222     378999999997654443 23344444444332211    1112 2234455


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh-----hHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          226 NAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS-----ELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       226 ~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s-----e~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      -.-+.+.+...|+.|+-+|..|+... ......     -+..++..|.+.    -..||..+..||-
T Consensus       322 ~~LL~~~~~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~Aa~aL~  383 (510)
T 3ul1_B          322 PSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKA----DFKTQKEAAWAIT  383 (510)
T ss_dssp             C-CTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHH
Confidence            55555889999999999999986432 111111     124455555543    3457776666654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.61  E-value=0.0013  Score=68.84  Aligned_cols=248  Identities=12%  Similarity=0.107  Sum_probs=148.8

Q ss_pred             HHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426            8 ILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV   79 (604)
Q Consensus         8 ~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia   79 (604)
                      .+-+.|.+-+ +++.+.-|+..|-.|+..        .+...||.|+..+.+.+   ..++++|+..|+-||.-.     
T Consensus       123 ~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~---~~v~e~A~~aL~nLa~~~-----  193 (529)
T 3tpo_A          123 KFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH---AHISEQAVWALGNIAGAG-----  193 (529)
T ss_dssp             HHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhccC-----
Confidence            3344454444 677777788888888752        24678999999887544   358999999999988422     


Q ss_pred             ccHHH------HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCC--CCCccccchhhHHhhhchhHHhhhcccchhhH
Q 007426           80 PQIDS------IMTTITKTLASSAGSFPLQQACSRVVPAIARYGID--PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTA  151 (604)
Q Consensus        80 PhL~K------ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~id--p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQs  151 (604)
                      |....      ++..++.-|.+++.+...-..-..++.+|+..+..  |...    -..+..++.+|...|......++.
T Consensus       194 ~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~----~~~~~~~lp~L~~LL~~~~~~v~~  269 (529)
T 3tpo_A          194 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP----LDAVEQILPTLVRLLHHNDPEVLA  269 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC----HHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh----HHHHhhHHHHHHHHhcCCcHHHHH
Confidence            22222      24556777776653321112223344445433321  2221    122344566777777777788999


Q ss_pred             HHHHHHHHHhccCCCCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhh----HHHHhHHHHHHHH
Q 007426          152 GAALCLKALVDSDNWRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNAL----IVEAYARLLIQSG  221 (604)
Q Consensus       152 GAALCLAAlVEs~nwr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~----iiea~g~~Ll~S~  221 (604)
                      -|+.||..+.+.      +++..+     .+++++..+|..++.... .-+..++.++..+..    ++..+   .++..
T Consensus       270 ~a~~aL~~l~~~------~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g---~l~~L  340 (529)
T 3tpo_A          270 DSCWAISYLTDG------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG---ALAVF  340 (529)
T ss_dssp             HHHHHHHHHHSS------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---GGGGH
T ss_pred             HHHHHHHHhhhh------hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc---cHHHH
Confidence            999999999985      343322     378999999997765443 344555555554432    22222   34555


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhh-----hHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426          222 LRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFS-----ELELIIEGMENCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       222 l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~s-----e~~S~I~~LE~cRfDKVk~VR~am~eAL  286 (604)
                      ..+|.    +.+...|+.|+-+|..|+.... .....     -+..++..|.+-    -..||..+..||
T Consensus       341 ~~LL~----~~~~~i~~~a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL  401 (529)
T 3tpo_A          341 PSLLT----NPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA----DFKTQKAAAWAI  401 (529)
T ss_dssp             HHHTT----CSSHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHH
T ss_pred             HHHHc----CCCHHHHHHHHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCC----CHHHHHHHHHHH
Confidence            66676    7899999999999999875321 11111     124455555543    345666665555

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.47  E-value=0.0046  Score=58.16  Aligned_cols=197  Identities=12%  Similarity=0.041  Sum_probs=125.3

Q ss_pred             CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhc
Q 007426           38 DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYG  117 (604)
Q Consensus        38 d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~  117 (604)
                      +..+++.++..+.+.+   ..+|..++..|+.+.          -+..+..+++.|.|++.  .+|.+++.+.+.+.   
T Consensus        21 ~~~~i~~L~~~L~~~~---~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~--~vR~~A~~aL~~l~---   82 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHN---SLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNY--IRRDIGAFILGQIK---   82 (280)
T ss_dssp             HTSCHHHHHHHTTCSS---HHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSH--HHHHHHHHHHHHSC---
T ss_pred             HHhhHHHHHHHHHcCC---HHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCH--HHHHHHHHHHHHhc---
Confidence            4568999999997543   458999988887764          15678888888888874  46777766655443   


Q ss_pred             CCCCCccccchhhHHhhhchhHHh-hhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHH
Q 007426          118 IDPTTPEDKKRHIIHSLCKPLSDS-LLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHM  196 (604)
Q Consensus       118 idp~~~~~~~~~ii~sl~KPL~Ea-L~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl  196 (604)
                      ..+.        .+..+..-|.+. +.+++..|...|+-+|..+-...     + ....++.+.+.++|++++...  -.
T Consensus        83 ~~~~--------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~-----~-~~~~~~~~~L~~~l~d~~~~v--R~  146 (280)
T 1oyz_A           83 ICKK--------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----P-IYSPKIVEQSQITAFDKSTNV--RR  146 (280)
T ss_dssp             CCTT--------THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC-----G-GGHHHHHHHHHHHTTCSCHHH--HH
T ss_pred             cccc--------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----C-cccHHHHHHHHHHhhCCCHHH--HH
Confidence            1111        122233334333 34455568999999999886532     1 112356677888898775322  34


Q ss_pred             HHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCcc
Q 007426          197 GLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMA  276 (604)
Q Consensus       197 ~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk  276 (604)
                      ..+.+|...+.       ...++..++.|.    ..||..|.+|+.+|..+- ..+        ..++..|-..=.|.-+
T Consensus       147 ~a~~aL~~~~~-------~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~-~~~--------~~~~~~L~~~l~d~~~  206 (280)
T 1oyz_A          147 ATAFAISVIND-------KATIPLLINLLK----DPNGDVRNWAAFAININK-YDN--------SDIRDCFVEMLQDKNE  206 (280)
T ss_dssp             HHHHHHHTC----------CCHHHHHHHHT----CSSHHHHHHHHHHHHHHT-CCC--------HHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHhcCC-------HHHHHHHHHHHc----CCCHHHHHHHHHHHHhhc-cCc--------HHHHHHHHHHhcCCCH
Confidence            45555555432       124566677787    689999999999998862 111        2334444444457789


Q ss_pred             chhHHHHHHHHH
Q 007426          277 YVKGASLEALQT  288 (604)
Q Consensus       277 ~VR~am~eALq~  288 (604)
                      .||..+.+||..
T Consensus       207 ~vR~~A~~aL~~  218 (280)
T 1oyz_A          207 EVRIEAIIGLSY  218 (280)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888854

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.45  E-value=0.0048  Score=55.11  Aligned_cols=185  Identities=16%  Similarity=0.127  Sum_probs=112.7

Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      +++-|.+++.  .+|..+..+++.|+..      ..+....++. ..+.+|.+.|...+..++..|+.||..+...+.  
T Consensus        17 l~~LL~s~~~--~v~~~a~~~L~~l~~~------~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--   86 (210)
T 4db6_A           17 MVQQLNSPDQ--QELQSALRKLSQIASG------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--   86 (210)
T ss_dssp             HHHHTTCSCH--HHHHHHHHHHHHHHTS------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--
T ss_pred             HHHHhcCCCH--HHHHHHHHHHHHHHcC------CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--
Confidence            4444566653  4677777777777733      1122222222 367889999988888899999999999985311  


Q ss_pred             CCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007426          168 FASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRILNAGPGEANSQKRLLAIQML  244 (604)
Q Consensus       168 ~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL  244 (604)
                      ..-..++. ...+.+..+|+++....+ .-..+++.|+..+......- -..+++..++.|+    ++|...|+.|+.+|
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~aL  162 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWAL  162 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHH
Confidence            00011221 266889999998764443 22334444443333221111 1125778888888    67999999999999


Q ss_pred             HHHHhhcCCCchhhh-HHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          245 NFLMKSLDPRSIFSE-LELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       245 ~~la~~~d~~~L~se-~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      ..|+...+ ...... ...++..|...-.+.-+.||+.+..||..
T Consensus       163 ~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~  206 (210)
T 4db6_A          163 SNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  206 (210)
T ss_dssp             HHHHTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99874321 111111 13356666666667788899888887754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.42  E-value=0.00061  Score=73.42  Aligned_cols=247  Identities=10%  Similarity=0.115  Sum_probs=140.1

Q ss_pred             CChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCcccHH
Q 007426            5 LSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIVPQID   83 (604)
Q Consensus         5 lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~iaPhL~   83 (604)
                      +-|.+++.|..  .++.-|+.|+..|-++.+ .+|+.++.|+..|.+- .+....|.-.++.+|..++..+++. ..++.
T Consensus       143 l~~~l~~~L~~--~~~~VRk~A~~al~~l~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~  218 (618)
T 1w63_A          143 LAGEVEKLLKT--SNSYLRKKAALCAVHVIR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFR  218 (618)
T ss_dssp             HHHHHHHHHHS--CCHHHHHHHHHHHHHHHH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHHHHH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHH
Confidence            34566666654  478888999999999988 5788888888877765 3334467888999999887544331 12333


Q ss_pred             HHHHHHHhhccCC-------------CCChhhHHHHHHHHHHHHhhcC-CCCCccccchhhHHhhhchhHHhh------h
Q 007426           84 SIMTTITKTLASS-------------AGSFPLQQACSRVVPAIARYGI-DPTTPEDKKRHIIHSLCKPLSDSL------L  143 (604)
Q Consensus        84 KImstIVRRLsDs-------------dSS~~vR~AC~kvv~ALAry~i-dp~~~~~~~~~ii~sl~KPL~EaL------~  143 (604)
                      +++..+++.|.+-             ..+.-+|..   ++..|..|+. +|.    ..    ..+...|...+      -
T Consensus       219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~---il~~L~~l~~~~~~----~~----~~~~~~L~~l~~~~~~~~  287 (618)
T 1w63_A          219 KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR---ILRLLRILGRNDDD----SS----EAMNDILAQVATNTETSK  287 (618)
T ss_dssp             TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH---HHHHHHHHTTTCHH----HH----HTTHHHHHHHHHTSCCSS
T ss_pred             HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH---HHHHHHHhCCCCHH----HH----HHHHHHHHHHHhcccccc
Confidence            3344444443320             011124444   4455555543 221    01    11222222222      1


Q ss_pred             cccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHH
Q 007426          144 GSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGL  222 (604)
Q Consensus       144 ~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l  222 (604)
                      +.+..|...|+-|+..+ .      ...++.......+.++|.++....+ +-|..+..+++..+..+..+    +...+
T Consensus       288 ~~~~aV~~ea~~~i~~l-~------~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~  356 (618)
T 1w63_A          288 NVGNAILYETVLTIMDI-K------SESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIV  356 (618)
T ss_dssp             THHHHHHHHHHHHHHHS-C------CCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHH
T ss_pred             chHHHHHHHHHHHHHhc-C------CCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHH
Confidence            12335666666666652 2      1345555566667777875433333 23344455566666665554    45667


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          223 RILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       223 ~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      .||.    ..|...|+.|.+.|..+...   ..+..-....++.++..  |  ..+|..+.+||-.
T Consensus       357 ~~l~----d~d~~Ir~~alelL~~l~~~---~nv~~iv~eL~~~l~~~--d--~e~r~~~v~~I~~  411 (618)
T 1w63_A          357 DCLK----DLDVSIKRRAMELSFALVNG---NNIRGMMKELLYFLDSC--E--PEFKADCASGIFL  411 (618)
T ss_dssp             HGGG----SSCHHHHHHHHHHHHHHCCS---SSTHHHHHHHHHHHHHC--C--HHHHHHHHHHHHH
T ss_pred             HHcc----CCChhHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHH
Confidence            7888    68999999999999887532   23444445566666642  2  4566666655543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.40  E-value=0.0074  Score=64.34  Aligned_cols=263  Identities=14%  Similarity=0.147  Sum_probs=146.8

Q ss_pred             CCCCCChHHHHHHhhhc-CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCC
Q 007426            1 MGRCLSPILRQELANLD-KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGANI   78 (604)
Q Consensus         1 mgr~lsp~~rqeL~KLs-~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~i   78 (604)
                      +|...+.++-+-+.-+. +|..-++++.-.|+.+++. +++.+...++.+... .++...+|.-+|+   +|+..+... 
T Consensus        43 ~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~~l~~n~l~kdL~~~n~~ir~~AL~---~L~~i~~~~-  117 (591)
T 2vgl_B           43 VGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMAIMAVNSFVKDCEDPNPLIRALAVR---TMGCIRVDK-  117 (591)
T ss_dssp             TTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHHHTTHHHHGGGSSSSSHHHHHHHHH---HHHTCCSGG-
T ss_pred             CCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHcCChHH-
Confidence            46777777666555442 3555688898899988884 333333333333211 2333456766654   444444322 


Q ss_pred             cccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHH
Q 007426           79 VPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLK  158 (604)
Q Consensus        79 aPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLA  158 (604)
                        .++-++..|.+-|.|++.  .||.+.+.++..+.+.  +|..-.+      ..+...|.+.|..++..|+.+|+.+|.
T Consensus       118 --~~~~l~~~l~~~L~d~~~--~VRk~A~~al~~i~~~--~p~~~~~------~~~~~~l~~lL~d~d~~V~~~A~~aL~  185 (591)
T 2vgl_B          118 --ITEYLCEPLRKCLKDEDP--YVRKTAAVCVAKLHDI--NAQMVED------QGFLDSLRDLIADSNPMVVANAVAALS  185 (591)
T ss_dssp             --GHHHHHHHHHHHSSCSCH--HHHHHHHHHHHHHHHS--SCCCHHH------HHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCCCCh--HHHHHHHHHHHHHHhh--Chhhccc------ccHHHHHHHHhCCCChhHHHHHHHHHH
Confidence              334456667777787753  4798888888888763  3332100      135666777777666689999999999


Q ss_pred             HHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426          159 ALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRL  238 (604)
Q Consensus       159 AlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RK  238 (604)
                      .+.+.+.- .+--++......++.+.|.+.+  .-+...++..|....+.- +.....+++....+|+    +.|+..|.
T Consensus       186 ~i~~~~~~-~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~~l~~~~-~~~~~~~l~~l~~~l~----~~~~~V~~  257 (591)
T 2vgl_B          186 EISESHPN-SNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSNYNPKD-DREAQSICERVTPRLS----HANSAVVL  257 (591)
T ss_dssp             HHTTSCCS-CCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHTSCCCS-HHHHHHHHHHHTTCSC----SSTTHHHH
T ss_pred             HHHhhCCC-ccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHc----CCChHHHH
Confidence            98875421 0001122233334444444322  124455556666655322 1223345565556665    78999999


Q ss_pred             HHHHHHHHHHhhc--CCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          239 LAIQMLNFLMKSL--DPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       239 AAAeaL~~la~~~--d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                      +|+.+|..+....  ++..+..-...++..|=..- ++=+.||-++.++|..-
T Consensus       258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i  309 (591)
T 2vgl_B          258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLI  309 (591)
T ss_dssp             HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHH
Confidence            9999998875322  22333321122222111111 23468888888887543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.39  E-value=0.0044  Score=69.41  Aligned_cols=246  Identities=11%  Similarity=0.130  Sum_probs=154.2

Q ss_pred             Cchh-HHHHHHHHHHHHhhcCCCChhHHHhhhccC------C-CCCCCchhhHHHHHHHHHHH-hCC--CCcc-----cH
Q 007426           19 DADS-RKSAMKALKSYVKDLDSKAIPLFLAQVSET------K-ENGSVSGEYTISLYEVLARV-HGA--NIVP-----QI   82 (604)
Q Consensus        19 DRDT-~~iA~~eLesiak~Ld~dtlP~FLscV~dt------d-~~~s~vRke~I~Lle~LArv-HG~--~iaP-----hL   82 (604)
                      |-+| |..|..-|+.+++.+....+|.++.-|...      + .+.-..|+=+|.+++.+|.. -+.  .+..     .+
T Consensus       373 d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l  452 (960)
T 1wa5_C          373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (960)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             cccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence            3334 556777888888888755566665544221      1 11123577789999999742 111  1111     45


Q ss_pred             HHH-HHHHHhhccCCCC-ChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426           83 DSI-MTTITKTLASSAG-SFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL  160 (604)
Q Consensus        83 ~KI-mstIVRRLsDsdS-S~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl  160 (604)
                      ..+ +..|+-.|.|+++ ...||.++..+++.++..+.         .+.+..++.-|+..|...+..|+..||.||...
T Consensus       453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~  523 (960)
T 1wa5_C          453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---------KAQLIELMPILATFLQTDEYVVYTYAAITIEKI  523 (960)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            554 4457777777742 45589988888888876531         123455556666677666677899999999999


Q ss_pred             hccCC------CCCCCH---HHHHHHHHHHHHhhcCCc-----cchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHh
Q 007426          161 VDSDN------WRFASD---EMVNKVCQNVAGALEEKS-----TQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRIL  225 (604)
Q Consensus       161 VEs~n------wr~Ap~---elv~rlc~Rv~kaL~~ks-----~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L  225 (604)
                      ++...      |.+...   +.+..+..++..+|+..+     ...+ ..+..++.++...+.-+.+|...+++....+|
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l  603 (960)
T 1wa5_C          524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV  603 (960)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH
T ss_pred             HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            88421      333233   445678888888888741     1122 56677777666665566778888888888777


Q ss_pred             cCCC-CCCCHHHHHHHHHHHHHHHhhcCCCchhhhHH----HHHHHHHhccCC
Q 007426          226 NAGP-GEANSQKRLLAIQMLNFLMKSLDPRSIFSELE----LIIEGMENCQSD  273 (604)
Q Consensus       226 ~~~~-~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~----S~I~~LE~cRfD  273 (604)
                      .... ..+|...+.-+.++|..|+...++..+.....    .+..+|+++-.|
T Consensus       604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~  656 (960)
T 1wa5_C          604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE  656 (960)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHh
Confidence            6432 24577888778999999987765544444433    344667765444

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.39  E-value=0.0033  Score=62.87  Aligned_cols=183  Identities=10%  Similarity=0.134  Sum_probs=120.5

Q ss_pred             HHHHHHhhhcCCc--------------hhHHHHHHHHHHHHhhcC-------CCChhHHHh-hhccCCCCCCCchhhHHH
Q 007426            8 ILRQELANLDKDA--------------DSRKSAMKALKSYVKDLD-------SKAIPLFLA-QVSETKENGSVSGEYTIS   65 (604)
Q Consensus         8 ~~rqeL~KLs~DR--------------DT~~iA~~eLesiak~Ld-------~dtlP~FLs-cV~dtd~~~s~vRke~I~   65 (604)
                      .+|..|..|. |+              +.+..|+..|..+++++|       ...+|+|+. +|.++   ...+|++++.
T Consensus        29 ~mk~~l~vl~-~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~---~~~vr~~Aa~  104 (296)
T 1xqr_A           29 QMKSCLRVLS-QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG---AAGLRWRAAQ  104 (296)
T ss_dssp             HHHHHHHHHH-SCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS---SHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC---CHHHHHHHHH
Confidence            4678888888 65              567789999999998775       577999999 77643   3468999999


Q ss_pred             HHHHHHHHhCC---CCcccHHHHHHHHHhhcc-CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHH
Q 007426           66 LYEVLARVHGA---NIVPQIDSIMTTITKTLA-SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSD  140 (604)
Q Consensus        66 Lle~LArvHG~---~iaPhL~KImstIVRRLs-DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~E  140 (604)
                      .++.++.-...   .++-  ...+..+++-|+ +++  ..+|..+.-+++.|++.-  +    .....++ ...+.||..
T Consensus       105 ~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~LL~~~~~--~~v~~~A~~ALsnl~~~~--~----~~~~~~~~~ggi~~L~~  174 (296)
T 1xqr_A          105 LIGTCSQNVAAIQEQVLG--LGALRKLLRLLDRDAC--DTVRVKALFAISCLVREQ--E----AGLLQFLRLDGFSVLMR  174 (296)
T ss_dssp             HHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHTTC--H----HHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHH--CCCHHHHHHHHccCCC--HHHHHHHHHHHHHHHcCC--c----HHHHHHHHCCCHHHHHH
Confidence            99999853210   0110  023444555554 333  336777777777776531  1    1111222 236779999


Q ss_pred             hhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH--HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh
Q 007426          141 SLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN--KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA  207 (604)
Q Consensus       141 aL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~--rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~  207 (604)
                      .|......++.-||.+|..+...++   .-...+-  .+++.++.+|+.+..... .-+..++.|++.+.
T Consensus       175 lL~~~d~~v~~~A~~aLs~L~~~~~---~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          175 AMQQQVQKLKVKSAFLLQNLLVGHP---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCCh---HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence            9988777899999999999987632   1223333  389999999998766655 34455556665543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.29  E-value=0.0046  Score=67.23  Aligned_cols=233  Identities=11%  Similarity=0.134  Sum_probs=154.3

Q ss_pred             cCCchhHHHHHHHHHHHHhhcC-----CCChhHHHhhhc-cCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007426           17 DKDADSRKSAMKALKSYVKDLD-----SKAIPLFLAQVS-ETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTIT   90 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~Ld-----~dtlP~FLscV~-dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIV   90 (604)
                      +.|++.+-+|+..|..++..-.     ..-.+.|+.|+. |.|   ..+|+.+|.|+-.++...      -+..||..+.
T Consensus       340 ~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d---~~Ir~~aL~lL~~l~~~~------Nv~~Iv~eL~  410 (621)
T 2vgl_A          340 HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD---VSVRQRAVDLLYAMCDRS------NAQQIVAEML  410 (621)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHCCHH------HHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHHcChh------hHHHHHHHHH
Confidence            4689999999999999987531     134677888887 554   358999999998887543      3677777777


Q ss_pred             hhccCCCCChhhHHHHHHHHHHHH-hhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426           91 KTLASSAGSFPLQQACSRVVPAIA-RYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA  169 (604)
Q Consensus        91 RRLsDsdSS~~vR~AC~kvv~ALA-ry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A  169 (604)
                      .-|.+.|..  .|...+.+++.+| +|..+           ...++.-|.+-|....+.+..-++-.+..+|...     
T Consensus       411 ~yl~~~d~~--~~~~~v~~I~~la~k~~~~-----------~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~-----  472 (621)
T 2vgl_A          411 SYLETADYS--IREEIVLKVAILAEKYAVD-----------YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR-----  472 (621)
T ss_dssp             HHHHHCCHH--HHHHHHHHHHHHHHHHCSS-----------THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG-----
T ss_pred             HHHHhcCHH--HHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC-----
Confidence            777776643  5788889999999 55321           1456666777777666666655666667777642     


Q ss_pred             CHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHH-------HHHHHhcCCCCCCCHHHHHHHHH
Q 007426          170 SDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQ-------SGLRILNAGPGEANSQKRLLAIQ  242 (604)
Q Consensus       170 p~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~-------S~l~~L~~~~~ssDWq~RKAAAe  242 (604)
                      | ++-...+.+++..|+++..++.        +.++..-+++-||..+..       -.++.|-......+..+|-.+..
T Consensus       473 ~-~~~~~~~~~l~~~l~~~~~~~~--------li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lt  543 (621)
T 2vgl_A          473 D-DVQGYAAKTVFEALQAPACHEN--------LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLS  543 (621)
T ss_dssp             C-SCHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHcCccchHH--------HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            1 1112245566778887753321        123333455666654332       12333332233678999998888


Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhccC--CCccchhHHHHHHHHHHHHhh
Q 007426          243 MLNFLMKSLDPRSIFSELELIIEGMENCQS--DQMAYVKGASLEALQTAKRIA  293 (604)
Q Consensus       243 aL~~la~~~d~~~L~se~~S~I~~LE~cRf--DKVk~VR~am~eALq~wK~Ia  293 (604)
                      ++.++....     .+....+..+|+.|..  |.=..||+=+   .++|+.+.
T Consensus       544 a~~Kl~~~~-----p~~~~~i~~~l~~~~~~~~~d~evrdRA---~~y~~Ll~  588 (621)
T 2vgl_A          544 TYIKFVNLF-----PEVKATIQDVLRSDSQLKNADVELQQRA---VEYLRLST  588 (621)
T ss_dssp             HHHHHHHHC-----GGGHHHHHHHHSSHHHHSCSSHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHC-----hHHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHHHHHc
Confidence            888876533     2235779999999998  9999999855   55666664

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.23  E-value=0.0056  Score=68.05  Aligned_cols=210  Identities=15%  Similarity=0.143  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHhhhccC------CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426           23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET------KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS   96 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt------d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs   96 (604)
                      |+.+.+-|+.++..+..+.++.++.-|...      +.+.-..++-+|..|+.+++.=.....|+|++||. ++-.|...
T Consensus       438 R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~  516 (971)
T 2x1g_F          438 RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYE  516 (971)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCcc
Confidence            345666777777766655566666544332      11222457778888888876544455799999999 66667633


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHH---H
Q 007426           97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDE---M  173 (604)
Q Consensus        97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~e---l  173 (604)
                      |....||.++..+++.++.++.+..       ..+..++.-|+.+| .  ..|+.-||.++..+++..     ..+   .
T Consensus       517 d~~~~vr~~a~~~l~~~~~~l~~~~-------~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~-----~~~l~p~  581 (971)
T 2x1g_F          517 KLNVKLLGTALETMGSYCNWLMENP-------AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC-----QLQLKPY  581 (971)
T ss_dssp             TSCHHHHHHHHHHHHHTHHHHC-----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH-----HHhcccc
Confidence            3345689988899999998765311       23455666677777 2  678999999999999862     333   3


Q ss_pred             HHHHHHHHHHhhcCCccchh---hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHH
Q 007426          174 VNKVCQNVAGALEEKSTQTN---SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAGPGEA--NSQKRLLAIQMLNFL  247 (604)
Q Consensus       174 v~rlc~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~~~ss--DWq~RKAAAeaL~~l  247 (604)
                      +..+...+..+|.++....+   ..+..++.++...+ .-..+|...++.-.++.|...+...  +=..+..+++.|..|
T Consensus       582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L  661 (971)
T 2x1g_F          582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI  661 (971)
T ss_dssp             HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence            44677778888887543333   45566666555322 3334455555444444333211121  222455555555444


Q ss_pred             H
Q 007426          248 M  248 (604)
Q Consensus       248 a  248 (604)
                      .
T Consensus       662 ~  662 (971)
T 2x1g_F          662 S  662 (971)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.19  E-value=0.015  Score=64.50  Aligned_cols=243  Identities=13%  Similarity=0.061  Sum_probs=144.0

Q ss_pred             cCCchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHH
Q 007426           17 DKDADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIM   86 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KIm   86 (604)
                      +.|...+..|+..|-.+++.-        .++.||.++..+.+..  ...+|+.++..|..|+.....  ...+.  .+|
T Consensus       161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I  236 (780)
T 2z6g_A          161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHHREG--LLAIFKSGGI  236 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchh--HHHHHHcCCH
Confidence            447888999999999988643        2356888888887432  345899999999988765321  11122  257


Q ss_pred             HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426           87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN  165 (604)
Q Consensus        87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n  165 (604)
                      ..+++-|.+.+.  .+|..+..++..|+..-      ++....+. ...+.+|++.|...+..++.-|+-||..+.-.  
T Consensus       237 ~~Lv~lL~~~~~--~v~~~A~~aL~nLa~~~------~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~--  306 (780)
T 2z6g_A          237 PALVNMLGSPVD--SVLFHAITTLHNLLLHQ------EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--  306 (780)
T ss_dssp             HHHHHHTTCSCH--HHHHHHHHHHHHHHHHS------TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHcCCCH--HHHHHHHHHHHHHhCCC------hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--
Confidence            778888887753  47888888888888541      12222222 34678899999887766777777777755532  


Q ss_pred             CCCCCHHH----HH-HHHHHHHHhhcCCccchh--hHHHHHHHHHHhh---hhHHHHhHHHHHHHHHHHhcCCCCCCCHH
Q 007426          166 WRFASDEM----VN-KVCQNVAGALEEKSTQTN--SHMGLVMALAKHN---ALIVEAYARLLIQSGLRILNAGPGEANSQ  235 (604)
Q Consensus       166 wr~Ap~el----v~-rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n---~~iiea~g~~Ll~S~l~~L~~~~~ssDWq  235 (604)
                          .++.    +. ...+.+..+|++......  +-..++..|+...   ..++..+   .++..+++|.    ..+..
T Consensus       307 ----~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g---~l~~Ll~lL~----~~~~~  375 (780)
T 2z6g_A          307 ----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG---GMQALGLHLT----DPSQR  375 (780)
T ss_dssp             ----CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTT---HHHHHGGGTT----CSCHH
T ss_pred             ----ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhc---hHHHHHHHHc----CCchH
Confidence                1111    11 244566777776532221  1123333333211   1122222   3566667776    56778


Q ss_pred             HHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          236 KRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       236 ~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      .+..|+.+|..|...... ..  ....+|..|-..=.++-+.||..+..||.
T Consensus       376 ~~~~a~~~L~~L~~~~~~-~~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~  424 (780)
T 2z6g_A          376 LVQNCLWTLRNLSDAATK-QE--GMEGLLGTLVQLLGSDDINVVTCAAGILS  424 (780)
T ss_dssp             HHHHHHHHHHHHHTTCTT-CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchh-hh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888888888754422 11  11234444333333455677877766663

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.14  E-value=0.0051  Score=66.30  Aligned_cols=230  Identities=17%  Similarity=0.118  Sum_probs=148.3

Q ss_pred             CCchhHHHHHHHHHHHHhhcC---CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhcc
Q 007426           18 KDADSRKSAMKALKSYVKDLD---SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLA   94 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~Ld---~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLs   94 (604)
                      .|+..|.+|+..|..+++.=.   ..-++.|+.|+.|.+.   .+|+.++.++..++..  .+    +..|+..++..|.
T Consensus       325 ~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~---~Ir~~alelL~~l~~~--~n----v~~iv~eL~~~l~  395 (618)
T 1w63_A          325 NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDV---SIKRRAMELSFALVNG--NN----IRGMMKELLYFLD  395 (618)
T ss_dssp             SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCH---HHHHHHHHHHHHHCCS--SS----THHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCCh---hHHHHHHHHHHHHccc--cc----HHHHHHHHHHHHH
Confidence            589999999999999997411   1235788899986543   5899999999988762  23    4667777777776


Q ss_pred             CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHH
Q 007426           95 SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMV  174 (604)
Q Consensus        95 DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv  174 (604)
                      +.+.  .+|..++.+++.+|.... |     ..    ...+.-|.+.|....+.+..-+..++..+|...     | ++-
T Consensus       396 ~~d~--e~r~~~v~~I~~la~k~~-~-----~~----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~-----p-~l~  457 (618)
T 1w63_A          396 SCEP--EFKADCASGIFLAAEKYA-P-----SK----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS-----V-EMH  457 (618)
T ss_dssp             HCCH--HHHHHHHHHHHHHHHSSC-C-----CH----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS-----C-STH
T ss_pred             hCCH--HHHHHHHHHHHHHHHHhC-c-----cH----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC-----h-hHH
Confidence            6553  479999999999994321 1     12    233444445555555667777888999999852     2 233


Q ss_pred             HHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHH------------------HHHHHHHHhcCCCCCCCHHH
Q 007426          175 NKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARL------------------LIQSGLRILNAGPGEANSQK  236 (604)
Q Consensus       175 ~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~------------------Ll~S~l~~L~~~~~ssDWq~  236 (604)
                      .....+++.+|.+......    ++    ++..-+++.||..                  ++.-...+++.-  ..+..+
T Consensus       458 ~~~v~~L~~~l~~~~~~~~----~~----~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~v  527 (618)
T 1w63_A          458 AYTVQRLYKAILGDYSQQP----LV----QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN--MSTSVT  527 (618)
T ss_dssp             HHHHHHHHHHHHHCCSCSH----HH----HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST--TCCHHH
T ss_pred             HHHHHHHHHHHhcccccHH----HH----HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc--CCCHHH
Confidence            3455566667765321111    11    1112234445532                  233333444421  368899


Q ss_pred             HHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHH
Q 007426          237 RLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTA  289 (604)
Q Consensus       237 RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~w  289 (604)
                      |-++..++.++.... +    +....+...|+.+..|.=..||+-+.+.+++.
T Consensus       528 r~~~lta~~Kl~~~~-~----~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll  575 (618)
T 1w63_A          528 RGYALTAIMKLSTRF-T----CTVNRIKKVVSIYGSSIDVELQQRAVEYNALF  575 (618)
T ss_dssp             HHHHHHHHHHHHTTC-S----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-c----chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999998887543 2    23677888899998888889999766654443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=97.11  E-value=0.011  Score=67.32  Aligned_cols=255  Identities=14%  Similarity=0.122  Sum_probs=160.9

Q ss_pred             CchhHHHHHHHHHHHHhhc-------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCC-Cccc--HHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKDL-------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGAN-IVPQ--IDSIMTT   88 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~L-------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~-iaPh--L~KImst   88 (604)
                      +.+.+.-|+..|-.++.+=       +...+|+++..+.+...   ..++++..-+.-|+..+-.. +.+.  +..++..
T Consensus       508 s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~---~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIpp  584 (810)
T 3now_A          508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE---KGKRHATQALARIGITINPEVSFSGQRSLDVIRP  584 (810)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH---HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHH
Confidence            7888899999998888641       47789999999975432   46999999999998764322 2221  2235666


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      ++.-|. ++++...+-   +++.||..-..   .+++-...|+. -.+.+|.+.|.+.+..+|.-|+-||..++-+..  
T Consensus       585 Lv~LL~-~~~~~l~~~---eAl~AL~NLa~---~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~--  655 (810)
T 3now_A          585 LLNLLQ-QDCTALENF---ESLMALTNLAS---MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED--  655 (810)
T ss_dssp             HHHTTS-TTSCHHHHH---HHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH--
T ss_pred             HHHHhC-CCCcHHHHH---HHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH--
Confidence            666555 343322121   22334442221   12233344444 368899999999999999999999999986421  


Q ss_pred             CCCHHHH--HHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH--HHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007426          168 FASDEMV--NKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA--RLLIQSGLRILNAGPGEANSQKRLLAIQ  242 (604)
Q Consensus       168 ~Ap~elv--~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g--~~Ll~S~l~~L~~~~~ssDWq~RKAAAe  242 (604)
                       .-..++  ....+-+.++|+......+ +=...+..|+..++..+..-.  ...++-.+++|.    ++|...|+.|+.
T Consensus       656 -~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~----s~d~~vq~~A~~  730 (810)
T 3now_A          656 -VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA----NPSPAVQHRGIV  730 (810)
T ss_dssp             -HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT----CSSHHHHHHHHH
T ss_pred             -HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC----CCCHHHHHHHHH
Confidence             000111  1255667788887665554 223444444442222222211  134677778888    789999999999


Q ss_pred             HHHHHHhhcCCCchhhhH--HHHHHHHHhcc-C--CCccchhHHHHHHHHHHHHh
Q 007426          243 MLNFLMKSLDPRSIFSEL--ELIIEGMENCQ-S--DQMAYVKGASLEALQTAKRI  292 (604)
Q Consensus       243 aL~~la~~~d~~~L~se~--~S~I~~LE~cR-f--DKVk~VR~am~eALq~wK~I  292 (604)
                      +|.-++.. + .....++  ..+|..|..+= .  +|-..|++.+.+||+..-++
T Consensus       731 aL~NL~~~-s-~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          731 IILNMINA-G-EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             HHHHHHTT-C-HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-C-HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence            99998753 3 2344444  45888888883 2  26788999999999876554

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.99  E-value=0.0073  Score=67.11  Aligned_cols=256  Identities=9%  Similarity=-0.012  Sum_probs=152.6

Q ss_pred             CchhHHHHHHHHHHHHhhcC--CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCC
Q 007426           19 DADSRKSAMKALKSYVKDLD--SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASS   96 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld--~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDs   96 (604)
                      ++--|..|+.-|-+|.+-|.  ++-++.+|..|...=+  +.++.++...+..+++.-+..+.||++.||..+...|..+
T Consensus       519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~  596 (971)
T 2x1g_F          519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG  596 (971)
T ss_dssp             CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            55567889999999999886  4556665554443211  5689999999999999888889999999999999998764


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcc--cc-------hhhHHHHHHHHHHhccCCCC
Q 007426           97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGS--QE-------SLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~q--qe-------~vQsGAALCLAAlVEs~nwr  167 (604)
                      .-....+....++++.++..+     +.++....+..++.|+.+.|..-  +.       .-...+--||..++.+-+-.
T Consensus       597 ~~~~~~~~~~~~ai~~i~~~~-----~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~  671 (971)
T 2x1g_F          597 RMKNSDSVRLMFSIGKLMSLL-----RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD  671 (971)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTS-----CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            322346778888888888643     24566778889999999877631  10       11223333555555431111


Q ss_pred             -----------CCCHHHHHHHHHHHHHhhcCCc--cch-hhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCC
Q 007426          168 -----------FASDEMVNKVCQNVAGALEEKS--TQT-NSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEAN  233 (604)
Q Consensus       168 -----------~Ap~elv~rlc~Rv~kaL~~ks--~qt-kAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssD  233 (604)
                                 .+-.+.++++.+-+..+|+...  ... .+-+.+++.++..-+.-+.+|...+++-.+..+.    +..
T Consensus       672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~----~~~  747 (971)
T 2x1g_F          672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQ----TRC  747 (971)
T ss_dssp             ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC------C
T ss_pred             cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHh----cCC
Confidence                       1123455566666666665321  111 2345566665554433445566666666665555    222


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC-----chhhhH----HHHHHHHHhc---cCCCccchhHHHHHHHHH
Q 007426          234 SQKRLLAIQMLNFLMKSLDPR-----SIFSEL----ELIIEGMENC---QSDQMAYVKGASLEALQT  288 (604)
Q Consensus       234 Wq~RKAAAeaL~~la~~~d~~-----~L~se~----~S~I~~LE~c---RfDKVk~VR~am~eALq~  288 (604)
                      -   -.+...+..+....+.+     .|....    ..++..|.++   -++-.+.|+++.++.+..
T Consensus       748 ~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~  811 (971)
T 2x1g_F          748 C---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQ  811 (971)
T ss_dssp             C---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHH
T ss_pred             c---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHH
Confidence            1   34666677766555432     122222    3344555555   444467777777766543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.97  E-value=0.026  Score=60.18  Aligned_cols=242  Identities=13%  Similarity=0.050  Sum_probs=141.2

Q ss_pred             cCCchhHHHHHHHHHHHHhhcC--------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007426           17 DKDADSRKSAMKALKSYVKDLD--------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTT   88 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~Ld--------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImst   88 (604)
                      +.|...+..|+..|..+++.-+        .+.+|.++..+.+..  ...+++.++..|..|+........-.-..+|..
T Consensus        25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~  102 (644)
T 2z6h_A           25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNLSHHREGLLAIFKSGGIPA  102 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHH
Confidence            3588999999999999998543        145888888887532  245789999888888764321110011136777


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWR  167 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr  167 (604)
                      +++-|.+++.  .+|..+..++..|+..-      ++....++ .-++.+|.+.|...+..++.-++-||..+.-.    
T Consensus       103 Lv~lL~~~~~--~v~~~A~~aL~nL~~~~------~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~----  170 (644)
T 2z6h_A          103 LVKMLGSPVD--SVLFYAITTLHNLLLHQ------EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG----  170 (644)
T ss_dssp             HHHHTTCSSH--HHHHHHHHHHHHHHHHS------TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHhCCCH--HHHHHHHHHHHHHHhCc------chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc----
Confidence            8888887763  46888888888888542      11222232 34788899999887777788888888877643    


Q ss_pred             CCCHH----HHH-HHHHHHHHhhcCCccchhhHHHHHHHHHHhh------hhHHHHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426          168 FASDE----MVN-KVCQNVAGALEEKSTQTNSHMGLVMALAKHN------ALIVEAYARLLIQSGLRILNAGPGEANSQK  236 (604)
Q Consensus       168 ~Ap~e----lv~-rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n------~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~  236 (604)
                        .++    ++. ...+.+..+|++... .+....++.+|..+.      ..+++.+   .++..+++|.    ..+-..
T Consensus       171 --~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~~~~~~~l~~~g---~l~~L~~ll~----~~~~~~  240 (644)
T 2z6h_A          171 --NQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAG---GMQALGLHLT----DPSQRL  240 (644)
T ss_dssp             --CHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTCTTHHHHHHHTT---HHHHHHTTTT----CSCHHH
T ss_pred             --CcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCcccHHHHHHCC---CHHHHHHHHh----cCCHHH
Confidence              122    111 245667778876532 222223333322221      1122221   3455555555    567788


Q ss_pred             HHHHHHHHHHHHhhcCCC-chhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426          237 RLLAIQMLNFLMKSLDPR-SIFSELELIIEGMENCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       237 RKAAAeaL~~la~~~d~~-~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL  286 (604)
                      |..|+.+|..|....... .+...+...++.|.    +.=..||..+..+|
T Consensus       241 ~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~----~~d~~v~~~a~~aL  287 (644)
T 2z6h_A          241 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL  287 (644)
T ss_dssp             HHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTT----CSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence            888888888876443211 11111233333332    33355666666555

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.95  E-value=0.024  Score=57.19  Aligned_cols=215  Identities=14%  Similarity=0.120  Sum_probs=127.5

Q ss_pred             CchhHHHHHHHHHHHHhh-------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD-------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTTI   89 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~-------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImstI   89 (604)
                      |.+.+..|+..|..+.+.       .+.+.||.++..+.+.+   ..++.+++..+..|+..+.... ..+  ...+..+
T Consensus        73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L  148 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKM  148 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHH
Confidence            788999999999887643       14578999999987644   4589999999999998764421 111  2345667


Q ss_pred             HhhccCCCCChhhHHHHHHHHHHHHhh--------------------cCCCCC----------------ccccchhhH-H
Q 007426           90 TKTLASSAGSFPLQQACSRVVPAIARY--------------------GIDPTT----------------PEDKKRHII-H  132 (604)
Q Consensus        90 VRRLsDsdSS~~vR~AC~kvv~ALAry--------------------~idp~~----------------~~~~~~~ii-~  132 (604)
                      ++-|.+++  ..++..+..+...|+..                    +.++..                ..+....++ .
T Consensus       149 ~~ll~~~~--~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  226 (529)
T 1jdh_A          149 VALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA  226 (529)
T ss_dssp             HHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHT
T ss_pred             HHHHhcCC--HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHC
Confidence            77776654  34566555555555421                    110000                000011111 1


Q ss_pred             hhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhh---
Q 007426          133 SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNAL---  208 (604)
Q Consensus       133 sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~---  208 (604)
                      .++.+|.+.|...+..++..++-+|..+.....    +.+.+..+.+.+.++|+.+....+ .-..+++.|+..+..   
T Consensus       227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~  302 (529)
T 1jdh_A          227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM  302 (529)
T ss_dssp             THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT----TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh----hhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            245667777766666677777777777776532    112345677888888876544333 222333333333221   


Q ss_pred             -HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q 007426          209 -IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM  248 (604)
Q Consensus       209 -iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la  248 (604)
                       +++.+   .++..++.|...  +++|..|..|+.+|..|.
T Consensus       303 ~~~~~~---~v~~L~~ll~~~--~~~~~v~~~a~~~L~nl~  338 (529)
T 1jdh_A          303 MVCQVG---GIEALVRTVLRA--GDREDITEPAICALRHLT  338 (529)
T ss_dssp             HHHHTT---HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHcC---ChHHHHHHHHcc--CCHHHHHHHHHHHHHHHH
Confidence             22222   466777777631  245999999999999985

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.88  E-value=0.025  Score=62.51  Aligned_cols=216  Identities=13%  Similarity=0.120  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHhhhccC-----CCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426           23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET-----KENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA   97 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt-----d~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd   97 (604)
                      |+.+.+-|+.++.-+..+.++.++..|...     +.+.-..++-++..++.++..=.....|++++||..+ -.|.++ 
T Consensus       424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~-  501 (963)
T 2x19_B          424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISIS-  501 (963)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCC-
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCC-
Confidence            344556677777666656677666555332     1111134666777777777544445678999998844 456653 


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHH
Q 007426           98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKV  177 (604)
Q Consensus        98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rl  177 (604)
                       ...||.++..+++.++.++.+.       ...+..++.-|+..|..  ..|+.-||.+|..+++...-...  +.+..+
T Consensus       502 -~~~vr~~~~~~l~~~~~~l~~~-------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~--p~~~~i  569 (963)
T 2x19_B          502 -NVQLADTVMFTIGALSEWLADH-------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLP--PYAANI  569 (963)
T ss_dssp             -SHHHHHHHHHHHHHTHHHHHHC-------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT--TTHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHHHHhC-------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH--hhHHHH
Confidence             3458999999999999876421       12344455555555532  67899999999999986321111  345677


Q ss_pred             HHHHHHhhcCCccc--hh-hHHHHHHHHHHhhh-hHHHHhHHHHHHHHHHHhcCCCC-CCCHHHHH---HHHHHHHHHHh
Q 007426          178 CQNVAGALEEKSTQ--TN-SHMGLVMALAKHNA-LIVEAYARLLIQSGLRILNAGPG-EANSQKRL---LAIQMLNFLMK  249 (604)
Q Consensus       178 c~Rv~kaL~~ks~q--tk-Ahl~LV~ALs~~n~-~iiea~g~~Ll~S~l~~L~~~~~-ssDWq~RK---AAAeaL~~la~  249 (604)
                      ...+..+|.+....  .+ ..+..++.++..-+ .....|...+++-..+.+..... ..+-..|+   ...++|..+++
T Consensus       570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~  649 (963)
T 2x19_B          570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT  649 (963)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            77777788753322  23 34556666665443 55567777777666655542111 12444444   56677777777


Q ss_pred             hcC
Q 007426          250 SLD  252 (604)
Q Consensus       250 ~~d  252 (604)
                      .+.
T Consensus       650 ~~~  652 (963)
T 2x19_B          650 TLD  652 (963)
T ss_dssp             HCC
T ss_pred             HcC
Confidence            775

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.84  E-value=0.057  Score=54.45  Aligned_cols=242  Identities=13%  Similarity=0.055  Sum_probs=142.2

Q ss_pred             cCCchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH--HHH
Q 007426           17 DKDADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID--SIM   86 (604)
Q Consensus        17 s~DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~--KIm   86 (604)
                      +.|.+.+..|+..|..+++.-        .++.+|.++..+.+..  ...+++.++..|..|+....  ....+.  ..|
T Consensus        28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~--~~~~~~~a~~~L~~ls~~~~--~~~~i~~~g~i  103 (529)
T 1jdh_A           28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNLSHHRE--GLLAIFKSGGI  103 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSHH--HHHHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCch--hHHHHHHcCCH
Confidence            348889999999999887632        2356899988887432  24578999999888875432  111111  256


Q ss_pred             HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426           87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN  165 (604)
Q Consensus        87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n  165 (604)
                      ..+++.|.+++.  .+|..+..++..|+..-.      +....++ ...+.+|.+.|...+..++.-++-||..+...  
T Consensus       104 ~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~------~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~--  173 (529)
T 1jdh_A          104 PALVKMLGSPVD--SVLFYAITTLHNLLLHQE------GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--  173 (529)
T ss_dssp             HHHHHHTTCSCH--HHHHHHHHHHHHHHHHCT------THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHcCCCH--HHHHHHHHHHHHHhcCCc------chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC--
Confidence            678888888763  467888888888885521      1122222 34778899999887777777777788766542  


Q ss_pred             CCCCCHHH----HH-HHHHHHHHhhcCCccchh--hHHHHHHHHHHhh---hhHHHHhHHHHHHHHHHHhcCCCCCCCHH
Q 007426          166 WRFASDEM----VN-KVCQNVAGALEEKSTQTN--SHMGLVMALAKHN---ALIVEAYARLLIQSGLRILNAGPGEANSQ  235 (604)
Q Consensus       166 wr~Ap~el----v~-rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~n---~~iiea~g~~Ll~S~l~~L~~~~~ssDWq  235 (604)
                          .++.    +. ...+.+..+|++......  +-..++..|+...   ..+++.+   .++..+++|.    ..+..
T Consensus       174 ----~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~~~~L~~ll~----~~~~~  242 (529)
T 1jdh_A          174 ----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG---GMQALGLHLT----DPSQR  242 (529)
T ss_dssp             ----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTT---HHHHHHTTTT----SSCHH
T ss_pred             ----CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCC---CHHHHHHHHh----CCChH
Confidence                1221    11 245567777775432221  1222222232211   1111111   3555556665    66888


Q ss_pred             HHHHHHHHHHHHHhhcCCCc-hhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          236 KRLLAIQMLNFLMKSLDPRS-IFSELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       236 ~RKAAAeaL~~la~~~d~~~-L~se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      .|..|+.+|..|........ +...+...++.|    .+.=+.||..+..+|.
T Consensus       243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----GSDDINVVTCAAGILS  291 (529)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT----TCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH----cCCCHHHHHHHHHHHH
Confidence            99999999999875432211 111223334444    3455667776665553

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.83  E-value=0.018  Score=61.45  Aligned_cols=248  Identities=13%  Similarity=0.092  Sum_probs=146.9

Q ss_pred             CchhHHHHHHHHHHHHhh-------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH-HHHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD-------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI-DSIMTTIT   90 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~-------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL-~KImstIV   90 (604)
                      |.+.+..|+..|..+.+.       .+...||.++..+.+.+   ..++++++..|..|+..+.......+ ..+|..++
T Consensus        70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv  146 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV  146 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHH
Confidence            788889999999876653       24578999999987643   45899999999999987643221111 34567788


Q ss_pred             hhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhccc-chhhHHHHHHHHHHhccCCCCC
Q 007426           91 KTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQ-ESLTAGAALCLKALVDSDNWRF  168 (604)
Q Consensus        91 RRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qq-e~vQsGAALCLAAlVEs~nwr~  168 (604)
                      +.|.+.+  ..++.++..++..|+..      ..+.+..++. ..+.+|.+.|.... +.++--++-+|..+-.+..   
T Consensus       147 ~lL~~~~--~~~~~~a~~~L~~La~~------~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~---  215 (644)
T 2z6h_A          147 ALLNKTN--VKFLAITTDCLQILAYG------NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS---  215 (644)
T ss_dssp             HGGGCCC--HHHHHHHHHHHHHHHTT------CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT---
T ss_pred             HHHCcCC--HHHHHHHHHHHHHHHhc------CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc---
Confidence            8887764  35677888888888731      1112222221 24667777776544 3444455555555544311   


Q ss_pred             CCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007426          169 ASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNF  246 (604)
Q Consensus       169 Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~  246 (604)
                      .-..++. ...+.+..+|+..+.... .-+.++..|+...+..  .....+++..++.|.    +.|+..|..|+.+|..
T Consensus       216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~----~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG----SDDINVVTCAAGILSN  289 (644)
T ss_dssp             HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT----CSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence            1122333 266778888887643322 2223333333332111  112346777888888    7899999999999999


Q ss_pred             HHhhcC--CCchhh--hHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          247 LMKSLD--PRSIFS--ELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       247 la~~~d--~~~L~s--e~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      |...-.  +..+..  -+...++.|.....  ...||..+..||..
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--~~~v~~~a~~aL~n  333 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRH  333 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCC--cHHHHHHHHHHHHH
Confidence            864211  011111  13556666665421  24677776666643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.70  E-value=0.023  Score=63.00  Aligned_cols=205  Identities=12%  Similarity=0.056  Sum_probs=124.7

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMTT   88 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KImst   88 (604)
                      +.+.+..|+..|..++..        .+.+.++.++..+.+.+.  ...++.++.++..|+.. . ...+.+  ..+|..
T Consensus       289 ~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~--~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~l~~  364 (780)
T 2z6g_A          289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--EKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQA  364 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC--HHHHHHHHHHHHHHHTS-T-THHHHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcC-h-HHHHHHHHhchHHH
Confidence            344567777777766532        466788888887764321  23456778888888742 1 112222  123566


Q ss_pred             HHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCC
Q 007426           89 ITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRF  168 (604)
Q Consensus        89 IVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~  168 (604)
                      ++.-|.+.+.  .++..|..++..|++...+.    +    .+..++.+|...|...+..++.-|+.||..+...     
T Consensus       365 Ll~lL~~~~~--~~~~~a~~~L~~L~~~~~~~----~----~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-----  429 (780)
T 2z6g_A          365 LGLHLTDPSQ--RLVQNCLWTLRNLSDAATKQ----E----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-----  429 (780)
T ss_dssp             HGGGTTCSCH--HHHHHHHHHHHHHHTTCTTC----S----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----
T ss_pred             HHHHHcCCch--HHHHHHHHHHHHHhccchhh----h----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-----
Confidence            7777777653  35666677777777554321    1    1245778888888887788999999999999774     


Q ss_pred             CCHHHHH-----HHHHHHHHhhcCCccchhhHHHHHHHHHHhh---h-------hHHHHhHHHHHHHHHHHhcCCCCCCC
Q 007426          169 ASDEMVN-----KVCQNVAGALEEKSTQTNSHMGLVMALAKHN---A-------LIVEAYARLLIQSGLRILNAGPGEAN  233 (604)
Q Consensus       169 Ap~elv~-----rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n---~-------~iiea~g~~Ll~S~l~~L~~~~~ssD  233 (604)
                       +++...     ..++++..+|...+.........+.+|..+.   +       .++..+   .++..+++|..   ..+
T Consensus       430 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~---~l~~L~~lL~~---~~~  502 (780)
T 2z6g_A          430 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY---GLPVVVKLLHP---PSH  502 (780)
T ss_dssp             -CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT---CHHHHHHTTST---TCC
T ss_pred             -CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC---CHHHHHHHhcC---CCh
Confidence             333222     3677888888763322122233333333322   1       122222   26677777874   456


Q ss_pred             HHHHHHHHHHHHHHHh
Q 007426          234 SQKRLLAIQMLNFLMK  249 (604)
Q Consensus       234 Wq~RKAAAeaL~~la~  249 (604)
                      |..|++|+.+|..|+.
T Consensus       503 ~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          503 WPLIKATVGLIRNLAL  518 (780)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.02  Score=56.67  Aligned_cols=191  Identities=16%  Similarity=0.261  Sum_probs=138.1

Q ss_pred             CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhch
Q 007426           58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP  137 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KP  137 (604)
                      .|+|.+|+++.++++..+.++.|.+.|.+.-+-|    +. ++|+-++-+++.|.+|+-  .            ..+++|
T Consensus        47 tV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k----sE-aIpltqeIa~a~G~la~i--~------------Pe~v~~  107 (253)
T 2db0_A           47 TVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK----SE-AIPLTQEIAKAFGQMAKE--K------------PELVKS  107 (253)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----CC-SHHHHHHHHHHHHHHHHH--C------------HHHHHH
T ss_pred             HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----cc-cCchHHHHHHHHhHHHHh--C------------HHHHHh
Confidence            5899999999999999999999999999875433    33 478889999999999965  2            357788


Q ss_pred             hHHhhhccc----chhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHH
Q 007426          138 LSDSLLGSQ----ESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEA  212 (604)
Q Consensus       138 L~EaL~~qq----e~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea  212 (604)
                      +...|+..-    ...-+|-+-.|-...-+      -+++...+..-+.-+|.+|...-| +-|+.++|+.....-.+.+
T Consensus       108 vVp~lfanyrigd~kikIn~~yaLeeIara------nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~P  181 (253)
T 2db0_A          108 MIPVLFANYRIGDEKTKINVSYALEEIAKA------NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP  181 (253)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGG
T ss_pred             hHHHHHHHHhcCCccceecHHHHHHHHHHh------ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCc
Confidence            888887765    34667777777766664      356777788888999999886667 7888888866555444444


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHH
Q 007426          213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASL  283 (604)
Q Consensus       213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~  283 (604)
                      +    ++-....|.    ..|=-.|-+|-|+|..||+ +.+. +-.-+-..++.|+..-.+=++.||++..
T Consensus       182 f----LprL~aLL~----D~deiVRaSaVEtL~~lA~-~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          182 F----LPRIINLLH----DGDEIVRASAVEALVHLAT-LNDK-LRKVVIKRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             G----HHHHHGGGG----CSSHHHHHHHHHHHHHHHT-SCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred             c----hHHHHHHHc----CcchhhhHHHHHHHHHHHH-cCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            4    666677888    5799999999999999984 4332 3323333344443333444555555443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.56  E-value=0.043  Score=63.92  Aligned_cols=192  Identities=9%  Similarity=0.142  Sum_probs=132.3

Q ss_pred             HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           84 SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        84 KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      +.+...++.|..++     .+.|.+++.+|+..+...... ..  .. ..+...|..++..++..  -||.+-+.++.+.
T Consensus        14 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~   82 (986)
T 2iw3_A           14 KVLEELFQKLSVAT-----ADNRHEIASEVASFLNGNIIE-HD--VP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQ   82 (986)
T ss_dssp             HHHHHHHHHHTTCC-----TTTHHHHHHHHHHHHTSSCSS-SS--CC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCT
T ss_pred             HHHHHHHhhccccc-----hhHHHHHHHHHHHHHhccccc-cc--cc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHh
Confidence            33444566665544     257777777777654421111 00  01 13555555666555555  8899999999877


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHH-hhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007426          164 DNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAK-HNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAI  241 (604)
Q Consensus       164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~-~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAA  241 (604)
                      .+...+-++.+-.+++-+..++.+|...-+ |--..+-|+++ +|+..    ...+++..+..|+.   +..||.+.+|.
T Consensus        83 ~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~---~~kw~~k~~~l  155 (986)
T 2iw3_A           83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA----IKALLPHLTNAIVE---TNKWQEKIAIL  155 (986)
T ss_dssp             TTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG----HHHHHHHHHHHHHH---CCCHHHHHHHH
T ss_pred             cCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHhcc---ccchHHHHHHH
Confidence            665555566666789999999998765433 32223333333 33333    25678999999974   34799999999


Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhh
Q 007426          242 QMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAA  294 (604)
Q Consensus       242 eaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~  294 (604)
                      +.|..|+... +..++..+..+|-+++.|=+|-=|.|..++.+++...=.+-+
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~  207 (986)
T 2iw3_A          156 AAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD  207 (986)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence            9999999777 788888899999999999999999999999999887655433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.52  E-value=0.81  Score=51.36  Aligned_cols=270  Identities=11%  Similarity=0.080  Sum_probs=155.1

Q ss_pred             HHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCC------CCcc-
Q 007426            8 ILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGA------NIVP-   80 (604)
Q Consensus         8 ~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~------~iaP-   80 (604)
                      -+.|.|...- ++|+.+.|-+.|+++-+  .|+ +...|..+.........+|-.|.-+|.-....|-.      .|.| 
T Consensus         6 ~l~~~L~~~~-spd~~~rAe~~L~~~~~--~p~-~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~   81 (960)
T 1wa5_C            6 TVAKFLAESV-IASTAKTSERNLRQLET--QDG-FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPAN   81 (960)
T ss_dssp             HHHHHHHHTT-SGGGHHHHHHHHHHHHT--STT-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHH
T ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHhhc--CCC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHH
Confidence            3567777765 77764449999988843  343 44455555533333346799999999988888754      3333 


Q ss_pred             cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426           81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL  160 (604)
Q Consensus        81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl  160 (604)
                      .-..|=..|+..|.++..  .+|...+.+++.|+++-- |..        ...|+.=|+..+..++...+-|+=.||..+
T Consensus        82 ~k~~ik~~ll~~l~~~~~--~ir~~l~~~ia~ia~~d~-p~~--------Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i  150 (960)
T 1wa5_C           82 NVELIKKEIVPLMISLPN--NLQVQIGEAISSIADSDF-PDR--------WPTLLSDLASRLSNDDMVTNKGVLTVAHSI  150 (960)
T ss_dssp             HHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHS-TTT--------CTTHHHHHHTTCCSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhhC-ccc--------hhHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            233455666666655442  479999999999997732 211        134666677777666556788999999999


Q ss_pred             hccCCCCCCCHHH-------HHHHHHHHHHh-------hcCCccc---hhhHHHHHHHHHHhh--------hhHHHHhHH
Q 007426          161 VDSDNWRFASDEM-------VNKVCQNVAGA-------LEEKSTQ---TNSHMGLVMALAKHN--------ALIVEAYAR  215 (604)
Q Consensus       161 VEs~nwr~Ap~el-------v~rlc~Rv~ka-------L~~ks~q---tkAhl~LV~ALs~~n--------~~iiea~g~  215 (604)
                      ++...|.+.++++       ++...+.+..+       |.+....   ....+....++.+.-        +..++....
T Consensus       151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~  230 (960)
T 1wa5_C          151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ  230 (960)
T ss_dssp             HGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            9864443455443       33334433332       4432111   010111111111111        222333334


Q ss_pred             HHHHHHHHHhcCCC---C--------CCCHHHHHHHHHHHHHHHhhcCCCch----hhhHHHHHHHHHhccCCCccchhH
Q 007426          216 LLIQSGLRILNAGP---G--------EANSQKRLLAIQMLNFLMKSLDPRSI----FSELELIIEGMENCQSDQMAYVKG  280 (604)
Q Consensus       216 ~Ll~S~l~~L~~~~---~--------ssDWq~RKAAAeaL~~la~~~d~~~L----~se~~S~I~~LE~cRfDKVk~VR~  280 (604)
                      ..++..+.+|....   .        +..|..||.+-+.|..++.... +.+    ...+..+++.|.+.. + ...-..
T Consensus       231 ~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~~f~~~~~~~~~~~~~~l~~~~-~-~~~~~~  307 (960)
T 1wa5_C          231 VGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE-DVFGPMINEFIQITWNLLTSIS-N-QPKYDI  307 (960)
T ss_dssp             HHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHCC-S-CTTSHH
T ss_pred             HHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC-C-CcCcHH
Confidence            44455566665321   1        1127889999999998874432 222    333455667776533 1 122346


Q ss_pred             HHHHHHHHHHHhhhc
Q 007426          281 ASLEALQTAKRIAAE  295 (604)
Q Consensus       281 am~eALq~wK~Ia~~  295 (604)
                      .+.+|++.|+.++..
T Consensus       308 ~~~~al~fl~~~~~~  322 (960)
T 1wa5_C          308 LVSKSLSFLTAVTRI  322 (960)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhCc
Confidence            789999999998753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=96.35  E-value=0.054  Score=61.78  Aligned_cols=258  Identities=19%  Similarity=0.126  Sum_probs=156.0

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC---
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHG---   75 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG---   75 (604)
                      |.+++-|.+=..|.|.++.|+..|--+..+        .+...||.++..+...   ++.+...++..|.-|+...-   
T Consensus       380 ~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~---d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          380 EACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG---NQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC---ChHHHHHHHHHHHHHcCCchhhh
Confidence            334455554334889999999998655422        1567799999998753   34578889999999987321   


Q ss_pred             ------------CCCcc---------cHH---------HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccc
Q 007426           76 ------------ANIVP---------QID---------SIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPED  125 (604)
Q Consensus        76 ------------~~iaP---------hL~---------KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~  125 (604)
                                  +.-+|         |+.         -.|..+|.-|++++  ..+|..++.+++.||..       .+
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s--~~vqe~Aa~aL~NLA~d-------~~  527 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES--HNSQELIARVLNAVCGL-------KE  527 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC--HHHHHHHHHHHHHHHTS-------HH
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCC-------HH
Confidence                        00011         222         24566777666654  34788888888888832       12


Q ss_pred             cchhhHHh-hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC-CHHHHHHHHHHHHHhhcCCcc-c--hhhHHHHHH
Q 007426          126 KKRHIIHS-LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA-SDEMVNKVCQNVAGALEEKST-Q--TNSHMGLVM  200 (604)
Q Consensus       126 ~~~~ii~s-l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A-p~elv~rlc~Rv~kaL~~ks~-q--tkAhl~LV~  200 (604)
                      -...++.. .++||...|......++-=||-+|+.+.-+.+...+ +...+....|.++.+|..... .  ..|.+ .+.
T Consensus       528 ~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~-AL~  606 (810)
T 3now_A          528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM-ALT  606 (810)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHH-HHH
T ss_pred             HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHH-HHH
Confidence            23334333 789999999877777888999999988765431100 011234578889999985422 1  11222 222


Q ss_pred             HHHHhh----hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHh-ccCC
Q 007426          201 ALAKHN----ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMEN-CQSD  273 (604)
Q Consensus       201 ALs~~n----~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~-cRfD  273 (604)
                      -|+..+    ..+++++|   ++..+++|.    +.+-..|++|+++|..|+..-  +.+..+.  ..++..|=. .+.+
T Consensus       607 NLa~~~d~~~~~Ii~aG~---l~~Lv~LL~----s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~  677 (810)
T 3now_A          607 NLASMNESVRQRIIKEQG---VSKIEYYLM----EDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDE  677 (810)
T ss_dssp             HHTTSCHHHHHHHHHTTH---HHHHHHHHH----SCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCS
T ss_pred             HHhcCCHHHHHHHHHcCC---HHHHHHHHc----CCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCC
Confidence            334332    23445444   678888888    577889999999999987532  2333222  124444322 2333


Q ss_pred             CccchhHHHHHHHH
Q 007426          274 QMAYVKGASLEALQ  287 (604)
Q Consensus       274 KVk~VR~am~eALq  287 (604)
                      + ..||.++.-||-
T Consensus       678 d-~~vq~~Aa~ALa  690 (810)
T 3now_A          678 D-EETATACAGALA  690 (810)
T ss_dssp             S-HHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHH
Confidence            3 456666655553

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.33  E-value=0.076  Score=61.89  Aligned_cols=190  Identities=13%  Similarity=0.121  Sum_probs=135.6

Q ss_pred             hhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhH
Q 007426           60 GEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLS  139 (604)
Q Consensus        60 Rke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~  139 (604)
                      +..+-.|-+.+...-+...+|  .+++..+.+-+.+-.+  .  .+-..++.+|+....  ..+  .....+..++-.++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~--~--~~a~~~~~~~~~~~~--~~~--~~e~~~~~~~~~~~  101 (986)
T 2iw3_A           32 HEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKT--A--ANAMQAVAHIANQSN--LSP--SVEPYIVQLVPAIC  101 (986)
T ss_dssp             HHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHH--H--HHHHHHHHHHTCTTT--CCT--TTHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCC--H--HHHHHHHHHHHHhcC--CCC--CcccchHHHHHHHH
Confidence            333333333333333344666  3899999999877643  1  333345666663322  111  12355566888899


Q ss_pred             HhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCC-ccchh-hHHHHHHHHHHhhhhHHHHhHHHH
Q 007426          140 DSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEK-STQTN-SHMGLVMALAKHNALIVEAYARLL  217 (604)
Q Consensus       140 EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~k-s~qtk-Ahl~LV~ALs~~n~~iiea~g~~L  217 (604)
                      ++++.+...|...|...+.|++.+-     +++.+..++|.+...|+.. -.|+| +-|.++..|++..+..+......+
T Consensus       102 ~~~~dk~~~v~~aa~~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~  176 (986)
T 2iw3_A          102 TNAGNKDKEIQSVASETLISIVNAV-----NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL  176 (986)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence            9999999899999999999999983     4445688999999999865 37888 889999999988777777777777


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHH
Q 007426          218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGME  268 (604)
Q Consensus       218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE  268 (604)
                      ++..-++.-    ..--..-|||-+++..+-..++-++|..++..+|++|.
T Consensus       177 ~p~~~~~~~----d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~  223 (986)
T 2iw3_A          177 IPVLSETMW----DTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA  223 (986)
T ss_dssp             HHHHHHHTT----CSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred             hcchHhhcc----cCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence            787777776    35668889999999999888888889988877776554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.04  E-value=0.046  Score=59.47  Aligned_cols=246  Identities=13%  Similarity=0.151  Sum_probs=141.4

Q ss_pred             CCCChHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChh--HHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCCCCc
Q 007426            3 RCLSPILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIP--LFLAQVSET-KENGSVSGEYTISLYEVLARVHGANIV   79 (604)
Q Consensus         3 r~lsp~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP--~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~~ia   79 (604)
                      +++-|.+++.|..-+.++--|+-|+-.|-++.+ ++|+.+|  .|+..|.+- .++++.|...++.++..++...+....
T Consensus       145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~  223 (621)
T 2vgl_A          145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK  223 (621)
T ss_dssp             HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence            456777888885335578888999999999998 6777666  565555443 333456899999999999998887777


Q ss_pred             ccHHHHHHHHHhhccCCCCC--------hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc-------
Q 007426           80 PQIDSIMTTITKTLASSAGS--------FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG-------  144 (604)
Q Consensus        80 PhL~KImstIVRRLsDsdSS--------~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~-------  144 (604)
                      |++++++..+-+-|.+.+-+        ++--=+-.+.+..|+.|...  .. .+...-+-.++..++..+.+       
T Consensus       224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~--~d-~~~~~~l~~~L~~il~~~~~~~ks~~l  300 (621)
T 2vgl_A          224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP--ED-PAVRGRLTECLETILNKAQEPPKSKKV  300 (621)
T ss_dssp             THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC--SS-HHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred             HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC--CC-HHHHHHHHHHHHHHHHhhccCcccccc
Confidence            88888777665554332110        00012556677777777531  10 11111122233333333221       


Q ss_pred             --ccc--hhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccc--hhhHHHHHHHHHHhhh--hHHHHhHHH
Q 007426          145 --SQE--SLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQ--TNSHMGLVMALAKHNA--LIVEAYARL  216 (604)
Q Consensus       145 --qqe--~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~q--tkAhl~LV~ALs~~n~--~iiea~g~~  216 (604)
                        .|.  .|-..++-|+-.+ +      +..+++...+..+.++|.++...  ..|+-.+ .-+++..+  ..+..    
T Consensus       301 ~~~n~~~aVl~ea~~~i~~l-~------~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l-~~l~~~~~~~~~~~~----  368 (621)
T 2vgl_A          301 QHSNAKNAVLFEAISLIIHH-D------SEPNLLVRACNQLGQFLQHRETNLRYLALESM-CTLASSEFSHEAVKT----  368 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-C------CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHH-HHHTTCTTTHHHHHT----
T ss_pred             cccchHHHHHHHHHHHHHhc-C------CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHH-HHHHhccCcHHHHHH----
Confidence              222  3444444444443 2      35677888888899999754322  2232222 23333332  22222    


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhc
Q 007426          217 LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENC  270 (604)
Q Consensus       217 Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~c  270 (604)
                      .....++||..   ..|-..|+-|.+.|..++..   +.+..-....++.|...
T Consensus       369 ~~~~i~~~L~~---d~d~~Ir~~aL~lL~~l~~~---~Nv~~Iv~eL~~yl~~~  416 (621)
T 2vgl_A          369 HIETVINALKT---ERDVSVRQRAVDLLYAMCDR---SNAQQIVAEMLSYLETA  416 (621)
T ss_dssp             THHHHHHHHTT---CCCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcc---CCCHhHHHHHHHHHHHHcCh---hhHHHHHHHHHHHHHhc
Confidence            24556677762   46888999999998886532   23443334455555543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.52  E-value=0.34  Score=53.51  Aligned_cols=123  Identities=12%  Similarity=0.108  Sum_probs=87.0

Q ss_pred             HHhhhcC-CchhHHHHHHHHHHHHhhcC--CC----ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHH
Q 007426           12 ELANLDK-DADSRKSAMKALKSYVKDLD--SK----AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDS   84 (604)
Q Consensus        12 eL~KLs~-DRDT~~iA~~eLesiak~Ld--~d----tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~K   84 (604)
                      .|..|.. ++--+..|+.-|-+|.+-|.  ++    -++.++..+.+     +.++.+|...|..+++.-+..++||++.
T Consensus       494 ~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-----~~V~~~A~~al~~l~~~~~~~l~p~~~~  568 (963)
T 2x19_B          494 LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-----PELSVSSVSTLKKICRECKYDLPPYAAN  568 (963)
T ss_dssp             HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC-----GGGHHHHHHHHHHHHHHTGGGCTTTHHH
T ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3444441 23345667888888877653  22    34445555533     4689999999999999888889999999


Q ss_pred             HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc
Q 007426           85 IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG  144 (604)
Q Consensus        85 ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~  144 (604)
                      ||..+...+...+-....+....++++.++...     +.++....+..++.||.+.+..
T Consensus       569 il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~-----~~~~~~~~~~~l~~~l~~~l~~  623 (963)
T 2x19_B          569 IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL-----QVEEILKNLHSLISPYIQQLEK  623 (963)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888654322346778888888888442     1355667788999999988753

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.46  E-value=0.17  Score=50.74  Aligned_cols=191  Identities=11%  Similarity=0.064  Sum_probs=126.2

Q ss_pred             cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhh
Q 007426           37 LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARY  116 (604)
Q Consensus        37 Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry  116 (604)
                      +.+..=+-|..++...+-   -.+-.++-.+......-...+...++-++--++-|+.|+.  +.|-..|-+++.++...
T Consensus        43 ~~~~~~~~~~~~lfs~d~---k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N--~~v~~~~L~~L~~l~~~  117 (266)
T 2of3_A           43 LGNQAKVSLMSQLFHKDF---KQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETN--PAALIKVLELCKVIVEL  117 (266)
T ss_dssp             HHTTBCHHHHHHHTCSCH---HHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHhcCCCH---HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHH
Confidence            333344667788886533   1233333333333333334455666666666676888775  44667888888887644


Q ss_pred             cCC--CCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-
Q 007426          117 GID--PTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-  193 (604)
Q Consensus       117 ~id--p~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-  193 (604)
                      +.+  ....+.+    ...|+-.|.|=|+...+.+=-.+--+|..+.+-     .|   .+++-+++...|+.|+.+++ 
T Consensus       118 l~~~~y~~~~~e----a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-----~~---~~~v~~~l~~g~ksKN~R~R~  185 (266)
T 2of3_A          118 IRDTETPMSQEE----VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-----VG---PLKMTPMLLDALKSKNARQRS  185 (266)
T ss_dssp             HHHTTCCCCHHH----HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----HC---HHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHhccccchHHH----HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-----CC---HHHHHHHHHHHHccCCHHHHH
Confidence            443  2232222    245777789999999998866666667666553     12   45667778889999999998 


Q ss_pred             hHHHHHHHHHHhhhhHHHHhHHHHH---HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426          194 SHMGLVMALAKHNALIVEAYARLLI---QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD  252 (604)
Q Consensus       194 Ahl~LV~ALs~~n~~iiea~g~~Ll---~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d  252 (604)
                      .=|..+.++....|.. .   ...+   +.+...|.    ..|-+.|.||..+|..+-.+++
T Consensus       186 e~l~~l~~li~~~G~~-~---~~~l~~~~~ia~ll~----D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          186 ECLLVIEYYITNAGIS-P---LKSLSVEKTVAPFVG----DKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             HHHHHHHHHHHHHCSG-G---GGGGCHHHHHGGGGG----CSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCC-c---cccccchHHHHHHHc----CCCHHHHHHHHHHHHHHHHHhh
Confidence            5777887877776655 2   1235   77778888    6899999999999999887775

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=95.08  E-value=0.48  Score=47.27  Aligned_cols=194  Identities=10%  Similarity=0.032  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHHhhccCCCCChh-------hHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHH-hhhcccchhh
Q 007426           80 PQIDSIMTTITKTLASSAGSFP-------LQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSD-SLLGSQESLT  150 (604)
Q Consensus        80 PhL~KImstIVRRLsDsdSS~~-------vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~E-aL~~qqe~vQ  150 (604)
                      |=-++.|-.++.-|.|+..+..       --+....+...|+.++-+..    -+..+. .-.+.||+. .|.+.+..++
T Consensus        24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d----na~~~~~~G~l~~Lv~~lL~s~~~~vr   99 (296)
T 1xqr_A           24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD----NAADFCQLSGMHLLVGRYLEAGAAGLR   99 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHTTTTCSSHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh----hHHHHHHcCCHHHHHHHHHcCCCHHHH
Confidence            6668889999999988732110       01345566667776654221    122221 124578999 8888888899


Q ss_pred             HHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCC-ccchh-hHHHHHHHHHHhhhh----HHHHhHHHHHHHHHH
Q 007426          151 AGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEK-STQTN-SHMGLVMALAKHNAL----IVEAYARLLIQSGLR  223 (604)
Q Consensus       151 sGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~k-s~qtk-Ahl~LV~ALs~~n~~----iiea~g~~Ll~S~l~  223 (604)
                      .-||-||+.++..+.  ..-.-++. ...+.+..+|+.. +...+ .-+..+..|+..++.    ++.+   ..++..++
T Consensus       100 ~~Aa~~Lg~ia~~n~--~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~---ggi~~L~~  174 (296)
T 1xqr_A          100 WRAAQLIGTCSQNVA--AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL---DGFSVLMR  174 (296)
T ss_dssp             HHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT---THHHHHHH
T ss_pred             HHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC---CCHHHHHH
Confidence            999999999997521  00011222 3778889999842 21111 123333344443332    2222   24777888


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          224 ILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       224 ~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      +|.    +.|...++.|+-+|..|+.. +.+.+.... ..++..|=..=-.+=..||+.+..||.
T Consensus       175 lL~----~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~  234 (296)
T 1xqr_A          175 AMQ----QQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC  234 (296)
T ss_dssp             HHH----SSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHH
T ss_pred             HHc----CCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHH
Confidence            888    68999999999999999865 333322221 123332222111234578888877774

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=94.68  E-value=0.17  Score=51.79  Aligned_cols=181  Identities=12%  Similarity=0.103  Sum_probs=111.2

Q ss_pred             CchhHHHHHHHHHHHHhh---------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH---HHHH
Q 007426           19 DADSRKSAMKALKSYVKD---------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI---DSIM   86 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~---------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL---~KIm   86 (604)
                      |.+.+..|+..|..++..         .+...||+++..|..+.+  ..+++.++..+..|+.. .+..-+.|   ...|
T Consensus       140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~--~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai  216 (354)
T 3nmw_A          140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK--ESTLKSVLSALWNLSAH-CTENKADICAVDGAL  216 (354)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHH
T ss_pred             CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCC--HHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcH
Confidence            677888888888777652         146779999988764322  34788888888888752 21112333   2466


Q ss_pred             HHHHhhccCCCCC--hhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           87 TTITKTLASSAGS--FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        87 stIVRRLsDsdSS--~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      ..+++-|.+.+.+  +.++..+.-++..|+.|+..   .++....++. -.+.||.+.|......++--|+-+|..+.-.
T Consensus       217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~  293 (354)
T 3nmw_A          217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR  293 (354)
T ss_dssp             HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Confidence            7788888655432  12455555677777766431   1222222222 2678888888777667777777777777532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426          164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM  243 (604)
Q Consensus       164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea  243 (604)
                            .++..+                                .+++.++   ++..++.|.    +.+-..|+.|+.+
T Consensus       294 ------~~~~~~--------------------------------~i~~~G~---i~~Lv~LL~----s~~~~i~~~A~~a  328 (354)
T 3nmw_A          294 ------NPKDQE--------------------------------ALWDMGA---VSMLKNLIH----SKHKMIAMGSAAA  328 (354)
T ss_dssp             ------CHHHHH--------------------------------HHHHTTH---HHHHHTTTT----CSSHHHHHHHHHH
T ss_pred             ------CHHHHH--------------------------------HHHHCCC---HHHHHHHHh----CCCHHHHHHHHHH
Confidence                  111100                                0112222   455666676    6788999999999


Q ss_pred             HHHHHhh
Q 007426          244 LNFLMKS  250 (604)
Q Consensus       244 L~~la~~  250 (604)
                      |..|+..
T Consensus       329 L~nL~~~  335 (354)
T 3nmw_A          329 LRNLMAN  335 (354)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9998754

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=94.45  E-value=1.3  Score=50.94  Aligned_cols=134  Identities=17%  Similarity=0.136  Sum_probs=97.7

Q ss_pred             HHHHHHhhh-------cCCchhHHHHHHHHHHHHhhcC--CCChhHHHhhhccC---CCCCCCchhhHHHHHHHHHHHhC
Q 007426            8 ILRQELANL-------DKDADSRKSAMKALKSYVKDLD--SKAIPLFLAQVSET---KENGSVSGEYTISLYEVLARVHG   75 (604)
Q Consensus         8 ~~rqeL~KL-------s~DRDT~~iA~~eLesiak~Ld--~dtlP~FLscV~dt---d~~~s~vRke~I~Lle~LArvHG   75 (604)
                      -+-+-|.+|       ..-+--+..++.-|-+|.+-+.  ++-||+-|.-+.+.   ..+...++..|-.+|..+++...
T Consensus       490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            344666666       3346678889999999999884  66788888887772   22334689999999999999999


Q ss_pred             CCCcccHHHHHHHHHhhccC---C----C------------CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhc
Q 007426           76 ANIVPQIDSIMTTITKTLAS---S----A------------GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCK  136 (604)
Q Consensus        76 ~~iaPhL~KImstIVRRLsD---s----d------------SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~K  136 (604)
                      ..+.||++.|+.++-.-|.-   +    +            +.+--+--.-+++|.|......   +.+++...+..++.
T Consensus       570 ~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~---~~e~~~~~l~~ll~  646 (980)
T 3ibv_A          570 KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL---TPEEQALYCDSLIN  646 (980)
T ss_dssp             TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Confidence            99999999999998776641   1    1            0111123477788888866432   35677889999999


Q ss_pred             hhHHhhhc
Q 007426          137 PLSDSLLG  144 (604)
Q Consensus       137 PL~EaL~~  144 (604)
                      ||+..|..
T Consensus       647 pl~~~l~~  654 (980)
T 3ibv_A          647 ALIGKANA  654 (980)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.5  Score=45.28  Aligned_cols=155  Identities=9%  Similarity=0.090  Sum_probs=93.5

Q ss_pred             HHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH----HHHHHHHHHHH-HhhcCCccchh-hHHHHHHHHHH
Q 007426          131 IHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD----EMVNKVCQNVA-GALEEKSTQTN-SHMGLVMALAK  204 (604)
Q Consensus       131 i~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~----elv~rlc~Rv~-kaL~~ks~qtk-Ahl~LV~ALs~  204 (604)
                      +..++.-|--.|...|-.|+..|.-||.++++...-.+...    ..+..+++.+. |.|.+...+++ +-+..+..++.
T Consensus        53 ~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~  132 (278)
T 4ffb_C           53 YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG  132 (278)
T ss_dssp             TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            34444445567778888899999999999998643222222    23445666554 45665443343 22333333333


Q ss_pred             hhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch--hhhHHHHHHHHHhccCCCccchhHHH
Q 007426          205 HNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI--FSELELIIEGMENCQSDQMAYVKGAS  282 (604)
Q Consensus       205 ~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L--~se~~S~I~~LE~cRfDKVk~VR~am  282 (604)
                      ...     .+..++..++..|.    +-+|+.|.++.+.|..++...+...+  ...+..++..+=.+=.|.-+.||+++
T Consensus       133 ~~~-----~~~~~~e~l~~~l~----~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA  203 (278)
T 4ffb_C          133 LDT-----SITQSVELVIPFFE----KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQT  203 (278)
T ss_dssp             TSS-----SSHHHHHHHGGGGG----CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred             hcC-----cHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            211     12223444455555    88999999999999998876554433  22345566666556678999999999


Q ss_pred             HHHHHHHHHhhh
Q 007426          283 LEALQTAKRIAA  294 (604)
Q Consensus       283 ~eALq~wK~Ia~  294 (604)
                      .+.+-.--+..|
T Consensus       204 ~~l~~~ly~~~G  215 (278)
T 4ffb_C          204 MNLIVEIYKVTG  215 (278)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHhC
Confidence            998865544433

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=94.33  E-value=0.42  Score=50.84  Aligned_cols=181  Identities=11%  Similarity=0.088  Sum_probs=109.6

Q ss_pred             CchhHHHHHHHHHHHHhh---------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHH---HHH
Q 007426           19 DADSRKSAMKALKSYVKD---------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQID---SIM   86 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~---------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~---KIm   86 (604)
                      |.+.+..|+..|..++..         .+...||+++..|..+.+  ..+++.++..+..|+.. .+..-+.|-   -.|
T Consensus       256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~--~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal  332 (458)
T 3nmz_A          256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK--ESTLKSVLSALWNLSAH-CTENKADICAVDGAL  332 (458)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS--HHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC--HHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcH
Confidence            777888888877666542         146779999988764432  35788899999999863 222223332   366


Q ss_pred             HHHHhhccCCCCC--hhhHHHHHHHHHHHHhhcCCCCCccccchhhH-HhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           87 TTITKTLASSAGS--FPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSLCKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        87 stIVRRLsDsdSS--~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      ..+++-|.+...+  +.++..+.-++..|+.|+..   ..+....++ .-.+.||.+.|......++--|+-+|..+.-.
T Consensus       333 ~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~  409 (458)
T 3nmz_A          333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR  409 (458)
T ss_dssp             HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence            7778877655432  12355555577777766431   112222222 12567788777766666777777777766532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007426          164 DNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQM  243 (604)
Q Consensus       164 ~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAea  243 (604)
                            .++..                                ..+++.++   ++..++.|.    +.+...|+.|+.+
T Consensus       410 ------~~~~~--------------------------------~~i~~~G~---I~~Lv~LL~----s~~~~v~~~Aa~A  444 (458)
T 3nmz_A          410 ------NPKDQ--------------------------------EALWDMGA---VSMLKNLIH----SKHKMIAMGSAAA  444 (458)
T ss_dssp             ------CHHHH--------------------------------HHHHHHTH---HHHHHTTTT----CSSHHHHHHHHHH
T ss_pred             ------CHHHH--------------------------------HHHHHCCC---HHHHHHHHh----CCCHHHHHHHHHH
Confidence                  11110                                01122222   455666666    6788999999999


Q ss_pred             HHHHHhh
Q 007426          244 LNFLMKS  250 (604)
Q Consensus       244 L~~la~~  250 (604)
                      |..|+..
T Consensus       445 L~nL~~~  451 (458)
T 3nmz_A          445 LRNLMAN  451 (458)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcC
Confidence            9998754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=93.55  E-value=1.9  Score=44.54  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=49.5

Q ss_pred             CchhHHHHHHHHHHHHhh-------c-CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcc-cHHHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD-------L-DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVP-QIDSIMTTI   89 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~-------L-d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaP-hL~KImstI   89 (604)
                      |.+.+..|+..|..++..       + +...||+|+..|..+.  ...++++++..|..||.. . ..-. -+.-.+..+
T Consensus        57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~L  132 (457)
T 1xm9_A           57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSST-D-ELKEELIADALPVL  132 (457)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHH
Confidence            777888899888888764       2 5788999999997432  235899999999999964 2 2211 112455566


Q ss_pred             Hhhc
Q 007426           90 TKTL   93 (604)
Q Consensus        90 VRRL   93 (604)
                      ++-|
T Consensus       133 v~ll  136 (457)
T 1xm9_A          133 ADRV  136 (457)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6666

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=93.51  E-value=0.85  Score=52.16  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=91.7

Q ss_pred             HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh-hhchhHHhhhcccch---hhHHHHHHHHHH
Q 007426           85 IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQES---LTAGAALCLKAL  160 (604)
Q Consensus        85 ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s-l~KPL~EaL~~qqe~---vQsGAALCLAAl  160 (604)
                      +|..++.-|++.+  ..+|...++++..|+..       .+..+.++.. .++||++.|....+.   +..-||-.||.+
T Consensus       458 vIp~Lv~Ll~S~s--~~~re~A~~aL~nLS~d-------~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          458 LISFLKREMHNLS--PNCKQQVVRIIYNITRS-------KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHHHHHHGGGSC--HHHHHHHHHHHHHHHTS-------GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCC--HHHHHHHHHHHHHHcCC-------HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            4455555554443  24688888999999833       2233444433 679999999887654   788899999999


Q ss_pred             hccCCCCCCCHHHH-----HHHHHHHHHhhcC-Cccch-----------hhHHHHHHH---HHHhh--------hhHHHH
Q 007426          161 VDSDNWRFASDEMV-----NKVCQNVAGALEE-KSTQT-----------NSHMGLVMA---LAKHN--------ALIVEA  212 (604)
Q Consensus       161 VEs~nwr~Ap~elv-----~rlc~Rv~kaL~~-ks~qt-----------kAhl~LV~A---Ls~~n--------~~iiea  212 (604)
                      .-+.|    |.-++     ....+.+..+|.. +...+           ..++..++|   |+...        ..++..
T Consensus       529 lis~n----p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~  604 (778)
T 3opb_A          529 LIFTN----PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST  604 (778)
T ss_dssp             HHTSC----HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred             HhcCC----HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence            87765    12111     1577888899982 33321           113333334   44443        113332


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 007426          213 YARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLD  252 (604)
Q Consensus       213 ~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d  252 (604)
                      .|  .++...+.|.    +++...|+||+|+|+-|+.+-+
T Consensus       605 ~g--a~~~L~~LL~----s~n~~VrrAA~elI~NL~~~~e  638 (778)
T 3opb_A          605 KV--YWSTIENLML----DENVPLQRSTLELISNMMSHPL  638 (778)
T ss_dssp             HH--HHHHHHHGGG----CSSHHHHHHHHHHHHHHHTSGG
T ss_pred             cC--HHHHHHHHHh----CCCHHHHHHHHHHHHHHhCCcH
Confidence            11  2455556666    6889999999999999986543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=93.10  E-value=2.8  Score=47.97  Aligned_cols=239  Identities=10%  Similarity=0.111  Sum_probs=136.8

Q ss_pred             hhcCCchhHHHHHHHHHHHHhhcC-------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcc---cHH
Q 007426           15 NLDKDADSRKSAMKALKSYVKDLD-------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVP---QID   83 (604)
Q Consensus        15 KLs~DRDT~~iA~~eLesiak~Ld-------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaP---hL~   83 (604)
                      +-. +..++..|++.|-.+..+-.       ...+|+.|.-+.+........|+.+.+-|.-++... +..+.+   .+ 
T Consensus       467 ~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~-  544 (778)
T 3opb_A          467 HNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL-  544 (778)
T ss_dssp             GGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST-
T ss_pred             cCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc-
Confidence            334 78899999999998887542       566898888887654332236888988888887433 111111   12 


Q ss_pred             HHHHHHHhhcc-CCCCC---hhhHH-----HHHHHHHH---HHhhcCCCCCc-cccchhhHHh--hhchhHHhhhcccch
Q 007426           84 SIMTTITKTLA-SSAGS---FPLQQ-----ACSRVVPA---IARYGIDPTTP-EDKKRHIIHS--LCKPLSDSLLGSQES  148 (604)
Q Consensus        84 KImstIVRRLs-DsdSS---~~vR~-----AC~kvv~A---LAry~idp~~~-~~~~~~ii~s--l~KPL~EaL~~qqe~  148 (604)
                      -.+.-++.-|. ++++.   ..-++     ..-.+..|   ||.+   |... ++-...|+..  ....|.+.|.++++.
T Consensus       545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~---~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~  621 (778)
T 3opb_A          545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS---ETSDGEEVCKHIVSTKVYWSTIENLMLDENVP  621 (778)
T ss_dssp             THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC---CSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred             cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC---CcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence            45566666666 33321   00011     12233344   4432   2111 2224557764  778888888888899


Q ss_pred             hhHHHHHHHHHHhccCCC---CCCCHH--HHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH--HHHHH
Q 007426          149 LTAGAALCLKALVDSDNW---RFASDE--MVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR--LLIQS  220 (604)
Q Consensus       149 vQsGAALCLAAlVEs~nw---r~Ap~e--lv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~--~Ll~S  220 (604)
                      +|-.|+-||+.++.+..-   .|.-.+  --.+=.+-+.++|......++ |-.+++.-|...++.+...-..  .++..
T Consensus       622 VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~  701 (778)
T 3opb_A          622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN  701 (778)
T ss_dssp             HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence            999999999999975321   121111  001113447788887776665 2222222222223333222222  35677


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHh----hcCCCchhhhH
Q 007426          221 GLRILNAGPGEANSQKRLLAIQMLNFLMK----SLDPRSIFSEL  260 (604)
Q Consensus       221 ~l~~L~~~~~ssDWq~RKAAAeaL~~la~----~~d~~~L~se~  260 (604)
                      ++++|.+.  .+|-..|.-++-+|..|+.    ..+.+.+..+.
T Consensus       702 Ll~lL~~~--~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~  743 (778)
T 3opb_A          702 AIQVFADQ--IDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ  743 (778)
T ss_dssp             HHHHHHHT--TTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHH
T ss_pred             HHHHHhcc--CCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHh
Confidence            78888842  2788899999999999884    23334555444

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=91.81  E-value=2  Score=43.83  Aligned_cols=231  Identities=16%  Similarity=0.107  Sum_probs=126.0

Q ss_pred             CCChhHHHhhhcc------CC--CCCCCchhhHHHHHHHHHHHhCCC--CcccHHHHHHHHHhhccCCCCChhhHHHHHH
Q 007426           39 SKAIPLFLAQVSE------TK--ENGSVSGEYTISLYEVLARVHGAN--IVPQIDSIMTTITKTLASSAGSFPLQQACSR  108 (604)
Q Consensus        39 ~dtlP~FLscV~d------td--~~~s~vRke~I~Lle~LArvHG~~--iaPhL~KImstIVRRLsDsdSS~~vR~AC~k  108 (604)
                      ...+|+++.-|..      +.  .....+++++...|.-||.-....  .+-...-+|..+|+-|++++.  .++...+.
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~~  149 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--DLQQVIAS  149 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH--HHHHHHHH
Confidence            3556766666631      11  111246888888888888533211  111123457788888876552  35555555


Q ss_pred             HHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcc-cchhhHHHHHHHHHHhc-cCCCCCCCHHHH--HHHHHHHHH
Q 007426          109 VVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGS-QESLTAGAALCLKALVD-SDNWRFASDEMV--NKVCQNVAG  183 (604)
Q Consensus       109 vv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~q-qe~vQsGAALCLAAlVE-s~nwr~Ap~elv--~rlc~Rv~k  183 (604)
                      ++..|+.. .    ..+-+..|+. -.+.||.+.|... ...++--|+-+|..+.- ++.   --..++  ....+-+.+
T Consensus       150 aL~nLs~~-~----~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~---nk~~i~~~~Gai~~Lv~  221 (354)
T 3nmw_A          150 VLRNLSWR-A----DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE---NKADICAVDGALAFLVG  221 (354)
T ss_dssp             HHHHHHTT-C----CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH---HHHHHHHSTTHHHHHHH
T ss_pred             HHHHHhcc-C----CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh---hhHHHHHhcCcHHHHHH
Confidence            55555521 0    1122333332 3689999987654 45677777777777654 210   012333  236777888


Q ss_pred             hhcCCccc----hh-hHHHHHHHHHHh---hh----hHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426          184 ALEEKSTQ----TN-SHMGLVMALAKH---NA----LIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL  251 (604)
Q Consensus       184 aL~~ks~q----tk-Ahl~LV~ALs~~---n~----~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~  251 (604)
                      +|..++..    .+ .=...+..|+.+   +.    .+++++   .++..++.|.    +.+...++.|+-+|..|+. -
T Consensus       222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g---~i~~Lv~lL~----~~~~~v~~~A~~aL~nLa~-~  293 (354)
T 3nmw_A          222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLLQHLK----SHSLTIVSNACGTLWNLSA-R  293 (354)
T ss_dssp             HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT---HHHHHHHHTT----CSCHHHHHHHHHHHHHHTS-S
T ss_pred             HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC---CHHHHHHHHc----CCChHHHHHHHHHHHHHhC-C
Confidence            99865432    11 112333333331   21    122222   3777888888    6888999999999999863 2


Q ss_pred             CCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          252 DPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       252 d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      +.+....-. ..+|..|-..=..+-+.||+.+..||.
T Consensus       294 ~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~  330 (354)
T 3nmw_A          294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  330 (354)
T ss_dssp             CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            222222111 335566655544555667776666654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=91.17  E-value=3.7  Score=43.61  Aligned_cols=229  Identities=16%  Similarity=0.113  Sum_probs=126.3

Q ss_pred             CCChhHHHhhhcc------C--CCCCCCchhhHHHHHHHHHHHhCCCCccc---HHHHHHHHHhhccCCCCChhhHHHHH
Q 007426           39 SKAIPLFLAQVSE------T--KENGSVSGEYTISLYEVLARVHGANIVPQ---IDSIMTTITKTLASSAGSFPLQQACS  107 (604)
Q Consensus        39 ~dtlP~FLscV~d------t--d~~~s~vRke~I~Lle~LArvHG~~iaPh---L~KImstIVRRLsDsdSS~~vR~AC~  107 (604)
                      ...+|+.+.-|..      +  +.....+++++...|.-||.-... .-..   ..-+|..+|+-|++.+.  .++..++
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~  264 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESE--DLQQVIA  264 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHH
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-cHHHHHHcCCcHHHHHHHHhCCCH--HHHHHHH
Confidence            4567777777631      1  111124688999999999853321 1112   24457888888886552  3454444


Q ss_pred             HHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcc-cchhhHHHHHHHHHHhc-c-CCCCCCCHHHH--HHHHHHH
Q 007426          108 RVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGS-QESLTAGAALCLKALVD-S-DNWRFASDEMV--NKVCQNV  181 (604)
Q Consensus       108 kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~q-qe~vQsGAALCLAAlVE-s-~nwr~Ap~elv--~rlc~Rv  181 (604)
                      .++..|+..     ...+-+..|+. -.+.||.+.|... ...++--|+-+|..+.- + +|    -..++  ....+-+
T Consensus       265 ~aL~nLs~~-----~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n----k~~I~~~~Gal~~L  335 (458)
T 3nmz_A          265 SVLRNLSWR-----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN----KADICAVDGALAFL  335 (458)
T ss_dssp             HHHHHHTSS-----CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHSTTHHHHH
T ss_pred             HHHHHHhcC-----CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH----HHHHHHhcCcHHHH
Confidence            444444411     01122233332 3689999987664 45677777777777765 2 11    12232  2356778


Q ss_pred             HHhhcCCccc----hh-hHHHHHHHHHH---hhh----hHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHh
Q 007426          182 AGALEEKSTQ----TN-SHMGLVMALAK---HNA----LIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMK  249 (604)
Q Consensus       182 ~kaL~~ks~q----tk-Ahl~LV~ALs~---~n~----~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~  249 (604)
                      ..+|..++..    .+ .=..++..|+.   .+.    .+++++   .++..++.|.    +.+...++.|+-+|.-|+.
T Consensus       336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---~i~~Lv~LL~----~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLLQHLK----SHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHHHHHSS----CSCHHHHHHHHHHHHHHHS
T ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---cHHHHHHHHc----CCChHHHHHHHHHHHHHHc
Confidence            8888865432    11 11233333443   122    222332   3677788888    6788999999999999863


Q ss_pred             hcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          250 SLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       250 ~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                       -+.+....-. ..+|..|-..=-.+-+.||+.+..||.
T Consensus       409 -~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~  446 (458)
T 3nmz_A          409 -RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  446 (458)
T ss_dssp             -SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             2222222111 335555555444555566766666654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=90.60  E-value=0.87  Score=38.68  Aligned_cols=117  Identities=10%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             hhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHh
Q 007426          134 LCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAY  213 (604)
Q Consensus       134 l~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~  213 (604)
                      ....|.+.|..++..+...|+.+|...-+        ..    + +.+.++|+++...  ....++.+|.+.+.      
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------~~----~-~~L~~~L~d~~~~--vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD--------EA----F-EPLLESLSNEDWR--IRGAAAWIIGNFQD------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS--------TT----H-HHHHHGGGCSCHH--HHHHHHHHHGGGCS------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc--------hH----H-HHHHHHHcCCCHH--HHHHHHHHHHhcCC------
Confidence            55667777777776777777666653321        11    2 5567888875422  34555666666642      


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          214 ARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       214 g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                       ...++..++.|+    ..||..|.+|+++|..+-   +        ...+..|...=.|+-+.||.++.+||.
T Consensus        72 -~~a~~~L~~~L~----d~~~~VR~~A~~aL~~~~---~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 -ERAVEPLIKLLE----DDSGFVRSGAARSLEQIG---G--------ERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             -HHHHHHHHHHHH----HCCTHHHHHHHHHHHHHC---S--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             123566667777    589999999999999862   1        123333433334788899999998874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=89.55  E-value=2.6  Score=49.28  Aligned_cols=60  Identities=18%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          219 QSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       219 ~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      ...++.|..   ..||..|.+|+.||..+-  .+     .....+|..|+..-.|....||..+..||-.
T Consensus       614 ~rlv~~L~~---~~d~~VR~gAalALGli~--aG-----n~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~  673 (963)
T 4ady_A          614 PRIVQLLSK---SHNAHVRCGTAFALGIAC--AG-----KGLQSAIDVLDPLTKDPVDFVRQAAMIALSM  673 (963)
T ss_dssp             HHHTTTGGG---CSCHHHHHHHHHHHHHHT--SS-----SCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---cCCHHHHHHHHHHHHHhc--cC-----CCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            444454543   789999999999998852  22     2336688888888999999999998877753

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=87.81  E-value=9.9  Score=43.89  Aligned_cols=220  Identities=11%  Similarity=0.041  Sum_probs=122.4

Q ss_pred             CchhhHHHHHHHHHHHhCC------CCcccHHHHHHHHHhhccCCC---CChhhHHHHHHHHHHHHhhcCCCCCccccch
Q 007426           58 VSGEYTISLYEVLARVHGA------NIVPQIDSIMTTITKTLASSA---GSFPLQQACSRVVPAIARYGIDPTTPEDKKR  128 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~------~iaPhL~KImstIVRRLsDsd---SS~~vR~AC~kvv~ALAry~idp~~~~~~~~  128 (604)
                      ..++=+|..|..+|..=..      -..+++|+++.-+++.|.+.-   .-..||.+|-.+++..+.+...-+       
T Consensus       458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-------  530 (980)
T 3ibv_A          458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-------  530 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-------
T ss_pred             HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-------
Confidence            3467777777777663211      234788888877776654221   223489999999998888875311       


Q ss_pred             hhHHhhhchhHH--hhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCcc--c-------------
Q 007426          129 HIIHSLCKPLSD--SLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKST--Q-------------  191 (604)
Q Consensus       129 ~ii~sl~KPL~E--aL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~--q-------------  191 (604)
                      +.+..++.-|++  .|.+.++.|+.-||..++..++...-.-.|  .+..+...+..+|.-+..  .             
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~--~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~  608 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN--YTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI  608 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS--SHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence            223334444444  444566789999999999999986533332  345566776666663211  1             


Q ss_pred             ----hh---hHHHHHHHHHHhhhh---HHHHhHHHH----HHHHHHHhcCCCCCCCHHHHH-HHHHHHHHHHhhcCCC--
Q 007426          192 ----TN---SHMGLVMALAKHNAL---IVEAYARLL----IQSGLRILNAGPGEANSQKRL-LAIQMLNFLMKSLDPR--  254 (604)
Q Consensus       192 ----tk---Ahl~LV~ALs~~n~~---iiea~g~~L----l~S~l~~L~~~~~ssDWq~RK-AAAeaL~~la~~~d~~--  254 (604)
                          ..   -++-.+|.|+...+.   -...|...|    +.....++.......+=..+. -.+-+|..+++.....  
T Consensus       609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~  688 (980)
T 3ibv_A          609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS  688 (980)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-
T ss_pred             ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC
Confidence                01   266667777766432   223444444    444556666433332222211 1233445556554211  


Q ss_pred             ---chhhhHH----HHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          255 ---SIFSELE----LIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       255 ---~L~se~~----S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                         -+...+.    -++.+|+..  -+-..||+++..+++-
T Consensus       689 ~~~p~~~~f~~~~~~il~~l~~~--~~~~~irea~~~~~~r  727 (980)
T 3ibv_A          689 EEVAWLASFNKASDEIFLILDRM--GFNEDIRGAVRFTSGR  727 (980)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHS--CCSHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence               0222222    244566664  4668999998877653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=87.80  E-value=13  Score=40.98  Aligned_cols=266  Identities=11%  Similarity=0.123  Sum_probs=139.9

Q ss_pred             CchhHHHHHHHHHHHHhh------cCCCChhHHHhhhccC---------------CCCCCCchhhHHHHHHHHHHHhC--
Q 007426           19 DADSRKSAMKALKSYVKD------LDSKAIPLFLAQVSET---------------KENGSVSGEYTISLYEVLARVHG--   75 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~------Ld~dtlP~FLscV~dt---------------d~~~s~vRke~I~Lle~LArvHG--   75 (604)
                      |.+.+..|+..|-.++..      +-...||+++.-|...               +.....+++.+...|..||..+.  
T Consensus       147 ~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~  226 (584)
T 3l6x_A          147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA  226 (584)
T ss_dssp             SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH
Confidence            555566666555433321      0013588887765211               11123578888888888875431  


Q ss_pred             CCCcccHHHHHHHHHhhccC----CCCChhhHHHHHHHHHHHHhhcCC--CCC----------------ccccchhh-H-
Q 007426           76 ANIVPQIDSIMTTITKTLAS----SAGSFPLQQACSRVVPAIARYGID--PTT----------------PEDKKRHI-I-  131 (604)
Q Consensus        76 ~~iaPhL~KImstIVRRLsD----sdSS~~vR~AC~kvv~ALAry~id--p~~----------------~~~~~~~i-i-  131 (604)
                      +..+=-.+-++..+|+-|++    .+.+..+..-|+-+..-|+..+..  |..                ...++-+. + 
T Consensus       227 R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~  306 (584)
T 3l6x_A          227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ  306 (584)
T ss_dssp             HHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGS
T ss_pred             HHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhc
Confidence            11111112233445554432    222223567788888888744310  100                00111111 1 


Q ss_pred             HhhhchhHHhhhc-ccchhhHHHHHHHHHHhccCCCCCCCH--HHH--HHHHHHHHHhhcCCccchh-hHHHHHHHHHHh
Q 007426          132 HSLCKPLSDSLLG-SQESLTAGAALCLKALVDSDNWRFASD--EMV--NKVCQNVAGALEEKSTQTN-SHMGLVMALAKH  205 (604)
Q Consensus       132 ~sl~KPL~EaL~~-qqe~vQsGAALCLAAlVEs~nwr~Ap~--elv--~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~  205 (604)
                      ...++||..-|.. .++.++-.||-+|..+.-+ +|..+..  ..|  ....+.+.++|..++...+ +-..+++-|+..
T Consensus       307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag-~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~  385 (584)
T 3l6x_A          307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAG-RWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD  385 (584)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            1346778888864 4577899999999999875 4532211  133  2568889999998765544 445555555543


Q ss_pred             --hhhHHHHhHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHHHHHhhcC--CCchhh--hHHHHHHHHHhccCCCc
Q 007426          206 --NALIVEAYARLLIQSGLRILNAGPGE----ANSQKRLLAIQMLNFLMKSLD--PRSIFS--ELELIIEGMENCQSDQM  275 (604)
Q Consensus       206 --n~~iiea~g~~Ll~S~l~~L~~~~~s----sDWq~RKAAAeaL~~la~~~d--~~~L~s--e~~S~I~~LE~cRfDKV  275 (604)
                        |..+|.   .-.|+-.++.|..+-..    .+-.+..+|.-+|+-|++.-.  ...|..  -+..++..|++.. .+-
T Consensus       386 ~~~~~~I~---~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~  461 (584)
T 3l6x_A          386 ARNKELIG---KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSE  461 (584)
T ss_dssp             CSCHHHHH---HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCH
T ss_pred             hhHHHHHH---hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CCh
Confidence              334443   34578888888843110    134678888899988763321  011111  1344455555432 244


Q ss_pred             cchhHHHHHHHHHH
Q 007426          276 AYVKGASLEALQTA  289 (604)
Q Consensus       276 k~VR~am~eALq~w  289 (604)
                      +.++.|+.=--.+|
T Consensus       462 ~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          462 KEVRAAALVLQTIW  475 (584)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555544444577

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=87.64  E-value=0.72  Score=52.42  Aligned_cols=185  Identities=8%  Similarity=0.018  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhhcCCCChhHHHhhhccC---CCCCCCchhhHHHHHHHHHHHhCCC-CcccHHHHHHHHHhhccCC--
Q 007426           23 RKSAMKALKSYVKDLDSKAIPLFLAQVSET---KENGSVSGEYTISLYEVLARVHGAN-IVPQIDSIMTTITKTLASS--   96 (604)
Q Consensus        23 ~~iA~~eLesiak~Ld~dtlP~FLscV~dt---d~~~s~vRke~I~Lle~LArvHG~~-iaPhL~KImstIVRRLsDs--   96 (604)
                      |+.+.+-|+.++.-...+.++.++..|...   ....-..++-++..++.+|..-+.. -.++++.|+..++. |.+-  
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~  508 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKR  508 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhc
Confidence            445556677776433334455555444322   1111134666777777665322111 12468888888876 4321  


Q ss_pred             --CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH---
Q 007426           97 --AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD---  171 (604)
Q Consensus        97 --dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~---  171 (604)
                        +..+.+|..+..+++..+.+....       ...+..++.-|++.|.+.+..||.-||.++..+++..     +.   
T Consensus       509 ~~~~~~~v~~~~~~~lgry~~~~~~~-------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~-----~~~l~  576 (1049)
T 3m1i_C          509 GKDNKAVVASDIMYVVGQYPRFLKAH-------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC-----KYHFV  576 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-----THHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-----HHHhh
Confidence              222335555666777777665421       1345666677777887777899999999999999852     23   


Q ss_pred             --------HHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh--hHHHHhHHHHHHH
Q 007426          172 --------EMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA--LIVEAYARLLIQS  220 (604)
Q Consensus       172 --------elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~--~iiea~g~~Ll~S  220 (604)
                              +.+..+...+..++........ ..+-.++.++..-+  .....|...|++-
T Consensus       577 ~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~  636 (1049)
T 3m1i_C          577 IQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL  636 (1049)
T ss_dssp             SCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred             cccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                    3356777777777776433333 34556666655443  3345555554443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=87.13  E-value=1.2  Score=37.88  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426           86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN  165 (604)
Q Consensus        86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n  165 (604)
                      +..+++.|.|++..  +|.++..+.+.+.    ++            . +.+|.++|..++..|...|+-.|..+-+   
T Consensus        14 ~~~l~~~L~~~~~~--vR~~A~~~L~~~~----~~------------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~---   71 (131)
T 1te4_A           14 LVPRGSHMADENKW--VRRDVSTALSRMG----DE------------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD---   71 (131)
T ss_dssp             -------CCSSCCC--SSSSCCSSTTSCS----ST------------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred             HHHHHHHhcCCCHH--HHHHHHHHHHHhC----ch------------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence            34456667777753  5766555443221    11            1 3778888887777888888887766432   


Q ss_pred             CCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426          166 WRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLN  245 (604)
Q Consensus       166 wr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~  245 (604)
                           .    +..+.+.++|++++...  -..++.+|.+.+.       ...++..++.|+    ..|+..|.+|+++|.
T Consensus        72 -----~----~a~~~L~~~L~d~~~~V--R~~A~~aL~~~~~-------~~a~~~L~~~l~----d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           72 -----E----RAVEPLIKLLEDDSGFV--RSGAARSLEQIGG-------ERVRAAMEKLAE----TGTGFARKVAVNYLE  129 (131)
T ss_dssp             -----H----HHHHHHHHHHHHCCTHH--HHHHHHHHHHHCS-------HHHHHHHHHHTT----SCCTHHHHHHHHHGG
T ss_pred             -----H----HHHHHHHHHHcCCCHHH--HHHHHHHHHHhCc-------HHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence                 2    23455667777664332  3444555555542       223566666776    689999999999986


Q ss_pred             H
Q 007426          246 F  246 (604)
Q Consensus       246 ~  246 (604)
                      .
T Consensus       130 ~  130 (131)
T 1te4_A          130 T  130 (131)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=84.93  E-value=51  Score=36.33  Aligned_cols=239  Identities=12%  Similarity=0.089  Sum_probs=135.4

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCC-hhHHHhhhccC---CCCCCCchhhHHHHHHHHHHHhC-------CCC-
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKA-IPLFLAQVSET---KENGSVSGEYTISLYEVLARVHG-------ANI-   78 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dt-lP~FLscV~dt---d~~~s~vRke~I~Lle~LArvHG-------~~i-   78 (604)
                      |.+-+.-|+.-|..++..        .+.+. ++..+.-|.+.   .++.....+.|++.|.-|+.-+-       +.+ 
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            445555566555544321        02233 45665555432   22233467889999988874320       000 


Q ss_pred             ----------------ccc--HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH--Hhhhchh
Q 007426           79 ----------------VPQ--IDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII--HSLCKPL  138 (604)
Q Consensus        79 ----------------aPh--L~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii--~sl~KPL  138 (604)
                                      +..  -+.+|..+++-|..+. ...++.+++.++.-|+.. ..+ .+ .....++  .-.+.+|
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag-~~~-~~-~~~~~~v~~~~glp~L  360 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAG-RWT-YG-RYIRSALRQEKALSAI  360 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHSS-CSH-HH-HHHHHHHTSHHHHHHH
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHHHHHHHHHHHHHHHcC-Ccc-cc-HHHHHHHHHcCcHHHH
Confidence                            011  1455666777775554 345788877777777631 000 00 1111222  2347888


Q ss_pred             HHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccch------hhHHHHHHHHH---Hhh---
Q 007426          139 SDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQT------NSHMGLVMALA---KHN---  206 (604)
Q Consensus       139 ~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qt------kAhl~LV~ALs---~~n---  206 (604)
                      .+-|....+.++--|+-+|..+....+=   -..+-...+|+++.+|...+.+.      .....+.++|.   ..+   
T Consensus       361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~  437 (584)
T 3l6x_A          361 ADLLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA  437 (584)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence            9999888888998888889888875431   12344469999999998764221      11233333332   222   


Q ss_pred             -hhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchh
Q 007426          207 -ALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVK  279 (604)
Q Consensus       207 -~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR  279 (604)
                       ..+++.+   .|+..+.+|...  ...-...|+|+.+|..|+.+-       ++   =..+++..|.|--++-
T Consensus       438 ~~~I~~~g---~I~~Lv~LL~s~--~~~~~v~k~Aa~vL~nl~~~~-------el---r~~~kk~G~~~~~f~~  496 (584)
T 3l6x_A          438 AKKLRETQ---GIEKLVLINKSG--NRSEKEVRAAALVLQTIWGYK-------EL---RKPLEKEGWKKSDFQV  496 (584)
T ss_dssp             HHHHHHTT---HHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHTSH-------HH---HHHHHTTTCCGGGGCC
T ss_pred             HHHHHHCC---ChHHHHHHHhCC--CCChHHHHHHHHHHHHHHcCH-------HH---HHHHHHcCCCHHHhcc
Confidence             2233333   477788888831  136689999999999987422       22   2455667777777664

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=83.48  E-value=3.3  Score=48.50  Aligned_cols=123  Identities=11%  Similarity=0.091  Sum_probs=89.1

Q ss_pred             CCchhHHHHHHHHHHHHhhcC--CCChhHHHhhhccC--C-CCC----------CCchhhHHHHHHHHHHHhCCCCcccH
Q 007426           18 KDADSRKSAMKALKSYVKDLD--SKAIPLFLAQVSET--K-ENG----------SVSGEYTISLYEVLARVHGANIVPQI   82 (604)
Q Consensus        18 ~DRDT~~iA~~eLesiak~Ld--~dtlP~FLscV~dt--d-~~~----------s~vRke~I~Lle~LArvHG~~iaPhL   82 (604)
                      .|+-.++.++.=|..|.+-+.  ++-+|+.|.-|...  + .++          ..+|+.|-..|..||+.++..++||+
T Consensus       544 ~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~  623 (1204)
T 3a6p_A          544 KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNF  623 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            388888888888877877764  55688887766644  1 110          14789999999999999999999999


Q ss_pred             HHHHHHHHhhccCCC-CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhc
Q 007426           83 DSIMTTITKTLASSA-GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLG  144 (604)
Q Consensus        83 ~KImstIVRRLsDsd-SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~  144 (604)
                      +.|..++...+.... =+-.-+-...++++.+|..+.    +.+.....+..||.|++..+..
T Consensus       624 ~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~----~~~~~~~~l~~ll~P~~~~w~~  682 (1204)
T 3a6p_A          624 DMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK----NYERQKVFLEELMAPVASIWLS  682 (1204)
T ss_dssp             HHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC----CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHcc
Confidence            999999998775332 111124566777777753321    2455566689999999999875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=83.14  E-value=25  Score=36.47  Aligned_cols=193  Identities=12%  Similarity=0.122  Sum_probs=103.6

Q ss_pred             CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhch
Q 007426           58 VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKP  137 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KP  137 (604)
                      ..||=+-=.+..++...-. +   | -.+.+|.|-|.+++   +  --..-++.+|++. ++|.        ++..+.+|
T Consensus        83 ~lKrLvYLyl~~~~~~~~e-~---i-Lv~Nsl~kDl~~~N---~--~iR~lALRtL~~I-~~~~--------m~~~l~~~  143 (355)
T 3tjz_B           83 TLRRMCYLTIKEMSCIAED-V---I-IVTSSLTKDMTGKE---D--SYRGPAVRALCQI-TDST--------MLQAIERY  143 (355)
T ss_dssp             HHHHHHHHHHHHHTTTSSC-G---G-GGHHHHHHHHHSSC---H--HHHHHHHHHHHHH-CCTT--------THHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHH-H---H-HHHHHHHhhcCCCc---H--hHHHHHHHHHhcC-CCHH--------HHHHHHHH
Confidence            3455544445555555222 1   2 45788999998887   2  2334466677644 3443        46789999


Q ss_pred             hHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHH
Q 007426          138 LSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLL  217 (604)
Q Consensus       138 L~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~L  217 (604)
                      +-.+|.+.+-+|..-|++|.+.++.-      .++++.+....+..+|.+++....+  +.+++|.....     ..+..
T Consensus       144 lk~~L~d~~pyVRk~A~l~~~kL~~~------~pe~v~~~~~~l~~ll~d~n~~V~~--~Al~lL~ei~~-----~d~~a  210 (355)
T 3tjz_B          144 MKQAIVDKVPSVSSSALVSSLHLLKC------SFDVVKRWVNEAQEAASSDNIMVQY--HALGLLYHVRK-----NDRLA  210 (355)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTTT------CHHHHHTTHHHHHHHTTCSSHHHHH--HHHHHHHHHHT-----TCHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhcc------CHHHHHHHHHHHHHHhcCCCccHHH--HHHHHHHHHHh-----hchHH
Confidence            99999999999999999999999985      4567888888999999887622221  22222222211     11222


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhh
Q 007426          218 IQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIA  293 (604)
Q Consensus       218 l~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia  293 (604)
                      +...+.-|....-.+.|..-    +.|..+++.. +..-..+...+++.++.+=    +.+-.++  .+|+.|-|.
T Consensus       211 ~~kLv~~l~~~~l~~~~~q~----~llr~l~~~~-~~d~~~~~~~~~~~l~~~L----~~~~~aV--vyEa~k~I~  275 (355)
T 3tjz_B          211 VSKMISKFTRHGLKSPFAYC----MMIRVASRQL-EDEDGSRDSPLFDFIESCL----RNKHEMV--VYEAASAIV  275 (355)
T ss_dssp             HHHHHHHHHSSCCSCHHHHH----HHHHHHTCC------------------CCC----CCSSHHH--HHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcChHHHH----HHHHHHHHhc-cccchhhHHHHHHHHHHHH----cCCChHH--HHHHHHHHH
Confidence            33344455543223577553    3344433222 2221223466777777764    3444333  244555554

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=81.13  E-value=3.5  Score=39.94  Aligned_cols=89  Identities=7%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             hhHHHhhhccCCCCCC-CchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCC
Q 007426           42 IPLFLAQVSETKENGS-VSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP  120 (604)
Q Consensus        42 lP~FLscV~dtd~~~s-~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp  120 (604)
                      +|+-|+|+-.. .-+. ..|+++-.|++.+++-||..---.-++|+.+..|.|-|+..++..+=+....+.+|...    
T Consensus        89 ipsvLtCll~k-~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~----  163 (196)
T 4atg_A           89 LPSLLTCVIGK-SIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKN----  163 (196)
T ss_dssp             HHHHHHHHHCT-TCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHH----
T ss_pred             HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHH----
Confidence            78889999843 2222 58999999999999999988777789999999999999999887777777776666643    


Q ss_pred             CCccccchhhHHhhhchhHHhhhc
Q 007426          121 TTPEDKKRHIIHSLCKPLSDSLLG  144 (604)
Q Consensus       121 ~~~~~~~~~ii~sl~KPL~EaL~~  144 (604)
                               ++..++=|-......
T Consensus       164 ---------~vr~~llP~l~~~~~  178 (196)
T 4atg_A          164 ---------VVNTVIREHAEEYKR  178 (196)
T ss_dssp             ---------HHHTHHHHHHHHHHH
T ss_pred             ---------HHHHhhhcCHHHHHH
Confidence                     345666666665553

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=80.83  E-value=14  Score=38.03  Aligned_cols=150  Identities=10%  Similarity=0.083  Sum_probs=83.9

Q ss_pred             HHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH--HhhhchhHHhhhcccchhhHHHHHHHHHHhcc
Q 007426           86 MTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII--HSLCKPLSDSLLGSQESLTAGAALCLKALVDS  163 (604)
Q Consensus        86 mstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii--~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs  163 (604)
                      +..++.-|..+.. ..++.+++-++.-|++.-  ......-...++  .-.+.||.+.|....+.++--|+-+|..+-..
T Consensus       285 l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~--~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          285 IRTYLNLMGKSKK-DATLEACAGALQNLTASK--GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhcCC-HHHHHHHHHHHHHhccCc--CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            4444444544432 235666666666665321  100000001222  13567899999888888988899888887553


Q ss_pred             CCCCCCCHHH-HHHHHHHHHHhhcCCccch----hhHHHHHHHHH---Hhhhh----HHHHhHHHHHHHHHHHhcCCCCC
Q 007426          164 DNWRFASDEM-VNKVCQNVAGALEEKSTQT----NSHMGLVMALA---KHNAL----IVEAYARLLIQSGLRILNAGPGE  231 (604)
Q Consensus       164 ~nwr~Ap~el-v~rlc~Rv~kaL~~ks~qt----kAhl~LV~ALs---~~n~~----iiea~g~~Ll~S~l~~L~~~~~s  231 (604)
                      .    .-..+ -....+.++.+|.......    .....+..+|.   ..++.    +.+.+   .++...+++.    +
T Consensus       362 ~----~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g---~l~~L~~L~~----~  430 (457)
T 1xm9_A          362 P----LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS---MLNNIINLCR----S  430 (457)
T ss_dssp             G----GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH---HHHHHHHHHH----C
T ss_pred             H----HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC---CHHHHHHHHc----C
Confidence            2    11223 3457888999999865531    11223333332   22221    22222   3666777787    4


Q ss_pred             C-CHHHHHHHHHHHHHHHh
Q 007426          232 A-NSQKRLLAIQMLNFLMK  249 (604)
Q Consensus       232 s-DWq~RKAAAeaL~~la~  249 (604)
                      + +-..+|.|+..|..+..
T Consensus       431 ~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          431 SASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             TTCHHHHHHHHHHHHTTSS
T ss_pred             CCcHHHHHHHHHHHHHHHc
Confidence            5 77899999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	604
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-06

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 33/316 (10%), Positives = 96/316 (30%), Gaps = 24/316 (7%)

Query: 17  DKDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSE--TKENGSVSGEYTISLYEVLARVH 74
           DK+ + +  A+K L   V  +    +   +  +      +   +    +I L  V+  + 
Sbjct: 56  DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP 115

Query: 75  ----GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHI 130
               G+ +   +   +T    +  +      +Q     ++  +           +    I
Sbjct: 116 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR--QGGLLVNFHPSI 173

Query: 131 IHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKST 190
           +  L   L+      + ++     + L  LV         + +   + +++   L +  +
Sbjct: 174 LTCLLPQLTS----PRLAVRKRTIIALGHLV-----MSCGNIVFVDLIEHLLSELSKNDS 224

Query: 191 QTNSH--MGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLM 248
            + +   +  + A+++     +  Y   +I   ++  N      + + R   IQ     +
Sbjct: 225 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN----VDDDELREYCIQAFESFV 280

Query: 249 KSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAENGPKFEKGSGSVI 308
           +   P+ ++  +  II       +    Y      E          ++  +      S  
Sbjct: 281 RRC-PKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDD 339

Query: 309 GSNFGRDHNRRRNLLN 324
                +        L+
Sbjct: 340 DDMSWKVRRAAAKCLD 355

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	604
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.03
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.61
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.54
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.54
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.28
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.26
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.26
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.11
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.88
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.86
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.85
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.72
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.14
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.99
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.87
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.81
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.47
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.29
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.28
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.15
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.83
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.63
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.27
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	93.99
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	92.64
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	92.07
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	87.69
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	87.14

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.7e-09  Score=113.28  Aligned_cols=268  Identities=13%  Similarity=0.112  Sum_probs=194.9

Q ss_pred             hHHHHHHhhh-cCCchhHHHHHHHHHHHHhhcCCCC---------hhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHh
Q 007426            7 PILRQELANL-DKDADSRKSAMKALKSYVKDLDSKA---------IPLFLAQVSET--KENGSVSGEYTISLYEVLARVH   74 (604)
Q Consensus         7 p~~rqeL~KL-s~DRDT~~iA~~eLesiak~Ld~dt---------lP~FLscV~dt--d~~~s~vRke~I~Lle~LArvH   74 (604)
                      +++...+.+| +.+.+++.++...|+.++..|....         ++.++..+.+.  +.....++.+++.++..+...+
T Consensus        83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~  162 (1207)
T d1u6gc_          83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  162 (1207)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            3444545544 4466778899999999999884322         45555555543  2223457999999999999999


Q ss_pred             CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc-chhhHHH
Q 007426           75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ-ESLTAGA  153 (604)
Q Consensus        75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq-e~vQsGA  153 (604)
                      |..+.|+...|+..++..|.++..  .||.++..+++.|+.++.+.         .+..++.+|++.|.... ..+..++
T Consensus       163 g~~l~~~~~~il~~l~~~l~~~~~--~vR~~A~~~l~~l~~~~~~~---------~~~~~~~~ll~~l~~~~~~~~~~~~  231 (1207)
T d1u6gc_         163 GGLLVNFHPSILTCLLPQLTSPRL--AVRKRTIIALGHLVMSCGNI---------VFVDLIEHLLSELSKNDSMSTTRTY  231 (1207)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSH--HHHHHHHHHHHHHTTTC-------------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             hHhhHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHccCCCHHHHHHH
Confidence            999999999999999999998874  47998889999998776432         23456777887776554 4567888


Q ss_pred             HHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcC-----
Q 007426          154 ALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNA-----  227 (604)
Q Consensus       154 ALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~-----  227 (604)
                      ..||.++......++.+  .+.++.+-+.++++....... +-+....+++...+..+..|...++...++.+..     
T Consensus       232 ~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~  309 (1207)
T d1u6gc_         232 IQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN  309 (1207)
T ss_dssp             HHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHHcchhhHH--HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchh
Confidence            99999999876555443  356778888889987766554 5566666777777666667777777666554421     


Q ss_pred             ----------------------------CCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchh
Q 007426          228 ----------------------------GPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVK  279 (604)
Q Consensus       228 ----------------------------~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR  279 (604)
                                                  ......|..|++|++.|..++... ++.+......++..|-.+=.|+...||
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~-~~~l~~~~~~~~~~L~~~l~d~~~~vr  388 (1207)
T d1u6gc_         310 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFYKTVSPALISRFKEREENVK  388 (1207)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHHTTTHHHHHSTTSCSSSHHH
T ss_pred             hhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence                                        123467999999999999998655 567777778888888888889999999


Q ss_pred             HHHHHHHHH
Q 007426          280 GASLEALQT  288 (604)
Q Consensus       280 ~am~eALq~  288 (604)
                      .++.+++..
T Consensus       389 ~~~~~~l~~  397 (1207)
T d1u6gc_         389 ADVFHAYLS  397 (1207)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888643

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.2e-07  Score=86.52  Aligned_cols=265  Identities=10%  Similarity=0.078  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHhhc-----CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhC-CCCcccHHHHHHHHHhhccCC
Q 007426           23 RKSAMKALKSYVKDL-----DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHG-ANIVPQIDSIMTTITKTLASS   96 (604)
Q Consensus        23 ~~iA~~eLesiak~L-----d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG-~~iaPhL~KImstIVRRLsDs   96 (604)
                      ++.++..+-.++...     -++-+|..+..+.+... ....++.++..+..++..-. ....+|+..|+..++..|.+.
T Consensus       105 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~  183 (458)
T d1ibrb_         105 PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS-TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE  183 (458)
T ss_dssp             SCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc
Confidence            333444555555443     24456666666653322 23457788999998887765 457889999999999999888


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCH--HHH
Q 007426           97 AGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASD--EMV  174 (604)
Q Consensus        97 dSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~--elv  174 (604)
                      +.+..+|.+|.+++..+..+..+.    .........+..-|.+++......+...+.-||..+++.....+.+-  +.+
T Consensus       184 ~~~~~v~~~a~~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~  259 (458)
T d1ibrb_         184 EPSNNVKLAATNALLNSLEFTKAN----FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL  259 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTTHHH----HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTH
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            877778999999998888654321    11122334455566666666666788888999999988755433331  111


Q ss_pred             HHH-----------------------------------------------------------HHHHHHhhcCCccch-hh
Q 007426          175 NKV-----------------------------------------------------------CQNVAGALEEKSTQT-NS  194 (604)
Q Consensus       175 ~rl-----------------------------------------------------------c~Rv~kaL~~ks~qt-kA  194 (604)
                      ..+                                                           ++.+...+.+..... ..
T Consensus       260 ~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  339 (458)
T d1ibrb_         260 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD  339 (458)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccc
Confidence            111                                                           111111111000000 00


Q ss_pred             HHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCC
Q 007426          195 HMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQ  274 (604)
Q Consensus       195 hl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDK  274 (604)
                      -..+-.+....-..+....+...++-.+++|...+.+++|..|.||+.+|..++....+..+..+...++..+=.+=.|.
T Consensus       340 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~  419 (458)
T d1ibrb_         340 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP  419 (458)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred             cccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC
Confidence            00000111111122223333344455555555555689999999999999998866555667777888888777777899


Q ss_pred             ccchhHHHHHHHHHHHHh
Q 007426          275 MAYVKGASLEALQTAKRI  292 (604)
Q Consensus       275 Vk~VR~am~eALq~wK~I  292 (604)
                      -+.||.++..+|.-.-..
T Consensus       420 ~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         420 SVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998544333

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2e-07  Score=92.66  Aligned_cols=244  Identities=12%  Similarity=0.174  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHHHHhhcCCC-----ChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccC
Q 007426           21 DSRKSAMKALKSYVKDLDSK-----AIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLAS   95 (604)
Q Consensus        21 DT~~iA~~eLesiak~Ld~d-----tlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsD   95 (604)
                      .-|..|+..|..++..++.+     -+|.|...+.|+.   ..+|+.++..|+.++..-|..+.+  ..++-.+.+-|.|
T Consensus       218 ~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~---~~Vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d  292 (588)
T d1b3ua_         218 SVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS---WRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKD  292 (588)
T ss_dssp             HHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSS---HHHHHHHHHTHHHHHHHHCHHHHH--HTHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhccccc---HHHHHHHHHhHHHHHHHhhhhhhh--hhhhHHHHHHHhc
Confidence            34567889999988877643     3566665554332   348999999999988876654322  3456666677778


Q ss_pred             CCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH
Q 007426           96 SAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN  175 (604)
Q Consensus        96 sdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~  175 (604)
                      ++.  .+|.++.+.++.+...+..    .......+..+..-|...+...+..+...+|.|+..+...    ........
T Consensus       293 ~~~--~vr~~a~~~l~~~~~~l~~----~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~----~~~~~~~~  362 (588)
T d1b3ua_         293 CEA--EVRAAASHKVKEFCENLSA----DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI----LGKDNTIE  362 (588)
T ss_dssp             SSH--HHHHHHHHHHHHHHHTSCT----TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH----HCHHHHHH
T ss_pred             cch--HHHHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc----cchhHHHH
Confidence            764  5799999999888865421    1111222333333344444555567877788887766543    12345667


Q ss_pred             HHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhH-HHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 007426          176 KVCQNVAGALEEKSTQTNSHMGLVMALAKHNALI-VEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPR  254 (604)
Q Consensus       176 rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~i-iea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~  254 (604)
                      .+.|.+..+|+++....+  ..++.++..+...+ .......+++...+.+.    +.+|..|+++++.|..++...+.+
T Consensus       363 ~l~p~l~~~l~d~~~~v~--~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~----d~~~~~r~~~~~~l~~l~~~~~~~  436 (588)
T d1b3ua_         363 HLLPLFLAQLKDECPEVR--LNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----DAKWRVRLAIIEYMPLLAGQLGVE  436 (588)
T ss_dssp             HTHHHHHHHHTCSCHHHH--HHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhhhhhhh--hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHcChH
Confidence            788999999987653322  22222222222111 12233456777777777    789999999999999999877654


Q ss_pred             chhhhHHHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          255 SIFSELELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       255 ~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      .+.   ...+..+..+=.|.+..||.++.++|..
T Consensus       437 ~~~---~~l~~~l~~~l~D~~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         437 FFD---EKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             GCC---HHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             hHH---HHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence            433   3445556666689999999998887643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.2e-06  Score=91.46  Aligned_cols=287  Identities=15%  Similarity=0.191  Sum_probs=193.7

Q ss_pred             CCCCChHHHHH----Hhhhc-CCchhHHHHHHHHHHHHhhcCCCChhHHHhhhccC--CCCCCCchhhHHHHHHHHHHHh
Q 007426            2 GRCLSPILRQE----LANLD-KDADSRKSAMKALKSYVKDLDSKAIPLFLAQVSET--KENGSVSGEYTISLYEVLARVH   74 (604)
Q Consensus         2 gr~lsp~~rqe----L~KLs-~DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dt--d~~~s~vRke~I~Lle~LArvH   74 (604)
                      |..+.|.+.+.    +..|. .+..-|+-|+..|..++..+..+.++.|+..+.+.  .......|+.++.+++.+++..
T Consensus       163 g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~  242 (1207)
T d1u6gc_         163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA  242 (1207)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred             hHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence            44555544444    44444 13334667899999999998877666665544432  2223457889999999999999


Q ss_pred             CCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcC--------------------CCCCcc----------
Q 007426           75 GANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGI--------------------DPTTPE----------  124 (604)
Q Consensus        75 G~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~i--------------------dp~~~~----------  124 (604)
                      |..+.||++++|..+++.+.+.+..  +|.+|..+...+...+.                    ||....          
T Consensus       243 ~~~~~~~l~~i~~~l~~~l~~~~~~--~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~  320 (1207)
T d1u6gc_         243 GHRIGEYLEKIIPLVVKFCNVDDDE--LREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM  320 (1207)
T ss_dssp             SGGGTTSCTTHHHHHHHHHSSCCTT--THHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred             chhhHHHHHHHHHHHHHHhcCccHH--HHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhh
Confidence            9999999999999999999777653  68988888888774332                    121100          


Q ss_pred             ------------------------------------------ccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhc
Q 007426          125 ------------------------------------------DKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVD  162 (604)
Q Consensus       125 ------------------------------------------~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVE  162 (604)
                                                                +.-...+..++..|+..+.+.++.+...+.-|+..++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         321 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             hhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence                                                      00011122344455666666677888888888888776


Q ss_pred             cCCCC-------------CCCHHHHH----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHH
Q 007426          163 SDNWR-------------FASDEMVN----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRI  224 (604)
Q Consensus       163 s~nwr-------------~Ap~elv~----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~  224 (604)
                      .....             ..+.....    .+.+.+.+.+++++...+ +-+.++..++...+..+..|...++...+..
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~  480 (1207)
T d1u6gc_         401 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS  480 (1207)
T ss_dssp             HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred             hccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHH
Confidence            43211             01222222    355556777788877766 5667777888888777788888889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHh
Q 007426          225 LNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRI  292 (604)
Q Consensus       225 L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~I  292 (604)
                      |.+.  ..+...|..|...+..++....++.+..+...++..+..+-.|+-..|+..+.++++..-+.
T Consensus       481 l~~~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~  546 (1207)
T d1u6gc_         481 LNDK--SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV  546 (1207)
T ss_dssp             TTCS--SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             Hhcc--cchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHH
Confidence            8853  55778899999999999887777777777777888888888888888888777776554433

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=9.8e-07  Score=87.62  Aligned_cols=220  Identities=14%  Similarity=0.115  Sum_probs=138.6

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCC-----CChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCC--Cc
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKDLDS-----KAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGAN--IV   79 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~-----dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~--ia   79 (604)
                      |++++.++  +.+...|..+++.|-.+++.+..     +-+|.|+..+.|.+   +.+|..++..+..++..=+..  ..
T Consensus       245 ~~l~~~~~--D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~---~~vr~~a~~~l~~~~~~l~~~~~~~  319 (588)
T d1b3ua_         245 PTLRQAAE--DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE---AEVRAAASHKVKEFCENLSADCREN  319 (588)
T ss_dssp             HHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred             HHHHHhcc--cccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccc---hHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            44554442  23456889999999999887653     34777777777543   458999999999988865543  34


Q ss_pred             ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHH
Q 007426           80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKA  159 (604)
Q Consensus        80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAA  159 (604)
                      +++.+|+..+.+.+.|+..  .||.+++..+..++..+.        +...+..+...+...|..+...+..+++-|+..
T Consensus       320 ~~~~~i~~~l~~~~~d~~~--~vr~~~~~~l~~~~~~~~--------~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         320 VIMSQILPCIKELVSDANQ--HVKSALASVIMGLSPILG--------KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCH--HHHHHHHTTGGGGHHHHC--------HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHhhcCCCh--HHHHHHHHHHhhhhhccc--------hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            5678888888888888763  478888887777774432        122334455556666666677889999998888


Q ss_pred             HhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007426          160 LVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRL  238 (604)
Q Consensus       160 lVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RK  238 (604)
                      ..+.-    .+..+...+.+.+...+++++.+.. +-+..++.+++.-+.  +.+...+.+-.+..|.    ...|..|.
T Consensus       390 ~~~~~----~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~----D~~~~VR~  459 (588)
T d1b3ua_         390 VNEVI----GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLV----DHVYAIRE  459 (588)
T ss_dssp             HHHHS----CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGG----CSSHHHHH
T ss_pred             HHhhc----chhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhcc----CCchhHHH
Confidence            87752    3566777788888888888765543 334444444333210  0111123333333444    34555555


Q ss_pred             HHHHHHHHHHhhc
Q 007426          239 LAIQMLNFLMKSL  251 (604)
Q Consensus       239 AAAeaL~~la~~~  251 (604)
                      +|+++|..|+...
T Consensus       460 ~A~~~L~~l~~~~  472 (588)
T d1b3ua_         460 AATSNLKKLVEKF  472 (588)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555433

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.2e-06  Score=89.08  Aligned_cols=226  Identities=12%  Similarity=0.148  Sum_probs=157.3

Q ss_pred             hHHHHHHHHHHHHhhcCCCChhHHHhhhccCC-CCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCCh
Q 007426           22 SRKSAMKALKSYVKDLDSKAIPLFLAQVSETK-ENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSF  100 (604)
Q Consensus        22 T~~iA~~eLesiak~Ld~dtlP~FLscV~dtd-~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~  100 (604)
                      -|+.|...|+.+++....+.+|.++.-|.+.- .+....|+-++..|+.++..=.+.+.||+++++..++..|.|+.  .
T Consensus       373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~--~  450 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK--A  450 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSC--H
T ss_pred             HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCC--H
Confidence            47888999999998888788888887777652 23335688888888888764445689999999999999998876  4


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHH
Q 007426          101 PLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQN  180 (604)
Q Consensus       101 ~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~R  180 (604)
                      .||.++..+++.++.++..     +.....+..++.+|+..|...++.||..|+-||..++|...-  .-.+.+..+.+.
T Consensus       451 ~Vr~~a~~~l~~~~~~~~~-----~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~--~l~p~~~~il~~  523 (888)
T d1qbkb_         451 LVRSITCWTLSRYAHWVVS-----QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDT  523 (888)
T ss_dssp             HHHHHHHHHHHHTHHHHHS-----SCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT--SSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhh-----hhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHH
Confidence            6899888888888866531     111223445666777777788888999999999999987542  233567788888


Q ss_pred             HHHhhcCCccchh-hHHHHHHHHHHhhhhHH--HHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchh
Q 007426          181 VAGALEEKSTQTN-SHMGLVMALAKHNALIV--EAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIF  257 (604)
Q Consensus       181 v~kaL~~ks~qtk-Ahl~LV~ALs~~n~~ii--ea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~  257 (604)
                      +.++|+....... ..+..+++++...+..+  +.+...+++..++.+... . .+-..+..+.+.|..++..++. .+.
T Consensus       524 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~-~~~~~~~~~le~l~~i~~~~~~-~~~  600 (888)
T d1qbkb_         524 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML-K-DEDKDLFPLLECLSSVATALQS-GFL  600 (888)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTS-C-TTCTTHHHHHHHHHHHHHHSTT-TTH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhc-c-cchHHHHHHHHHHHHHHHHhHH-HHh
Confidence            9999987543333 34555666665443332  345566777777766632 2 2223455678889888877764 343


Q ss_pred             hh
Q 007426          258 SE  259 (604)
Q Consensus       258 se  259 (604)
                      .+
T Consensus       601 ~~  602 (888)
T d1qbkb_         601 PY  602 (888)
T ss_dssp             HH
T ss_pred             hh
Confidence            33

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.2e-05  Score=76.89  Aligned_cols=260  Identities=11%  Similarity=0.104  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHhhcCCCChhH----HHh---hhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCC
Q 007426           25 SAMKALKSYVKDLDSKAIPL----FLA---QVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSA   97 (604)
Q Consensus        25 iA~~eLesiak~Ld~dtlP~----FLs---cV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsd   97 (604)
                      .....|..+++.+.....+.    ++.   .+.....+.+.++++++..+..++...|....||++.||..|++.|.+..
T Consensus       583 ~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~  662 (876)
T d1qgra_         583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA  662 (876)
T ss_dssp             HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCC
Confidence            34455666666664333222    222   23333444567899999999999999999999999999999999997765


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhccc--chhhHHHHHHHHHHhccCCCCCCCHHHHH
Q 007426           98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQ--ESLTAGAALCLKALVDSDNWRFASDEMVN  175 (604)
Q Consensus        98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qq--e~vQsGAALCLAAlVEs~nwr~Ap~elv~  175 (604)
                      . ..+|.+|...++.+++++.      ..-...+..++..|++.|...+  ..+...+.-|+..++.+-.-.  -.+.++
T Consensus       663 ~-~~v~~~a~~~l~~l~~~~~------~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~--~~~yl~  733 (876)
T d1qgra_         663 E-YQVCLAAVGLVGDLCRALQ------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE--FKKYLE  733 (876)
T ss_dssp             T-HHHHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG--GGGGHH
T ss_pred             c-HHHHHHHHHHHHHHHHHhH------HhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHh--hHHHHH
Confidence            3 2379999999999987643      1223345678889999997655  346667777888777653311  224466


Q ss_pred             HHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHH--------------------HHHHHHHHhcC--CCCCCC
Q 007426          176 KVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARL--------------------LIQSGLRILNA--GPGEAN  233 (604)
Q Consensus       176 rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~--------------------Ll~S~l~~L~~--~~~ssD  233 (604)
                      .+.+.+.++++.......  ...+-.+..+.-.+++.|..-                    .+....+++..  .....+
T Consensus       734 ~~l~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~  811 (876)
T d1qgra_         734 VVLNTLQQASQAQVDKSD--YDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHT  811 (876)
T ss_dssp             HHHHHHHHHHTCCCCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCC
T ss_pred             HHHHHHHHHHhcccCccc--hhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            677777777664322211  111111111111122222211                    11222222211  123568


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426          234 SQKRLLAIQMLNFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE  295 (604)
Q Consensus       234 Wq~RKAAAeaL~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~  295 (604)
                      +..+.+|...|..|....+...+....  ..+...|+..+...-+..|..+.-|.+.-|+++-+
T Consensus       812 ~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~~~  875 (876)
T d1qgra_         812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQ  875 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccC
Confidence            899999999999998877654433322  66778888888888899999999999999998653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.2e-05  Score=80.16  Aligned_cols=265  Identities=11%  Similarity=0.100  Sum_probs=164.8

Q ss_pred             CchhHHHHHHHHHHHHhhcCC-CChhHHHhhhccC-CCCCC-CchhhHHHHHHHHHHHhCC---CCcccHHHHHHHHHhh
Q 007426           19 DADSRKSAMKALKSYVKDLDS-KAIPLFLAQVSET-KENGS-VSGEYTISLYEVLARVHGA---NIVPQIDSIMTTITKT   92 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~-dtlP~FLscV~dt-d~~~s-~vRke~I~Lle~LArvHG~---~iaPhL~KImstIVRR   92 (604)
                      |+.-|+.+..-+-.|++.--+ +..|-++..|.+. ..+.+ ..|.-++.+|..++..-+.   .+.+++..|+..|+..
T Consensus       108 ~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~  187 (861)
T d2bpta1         108 EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQG  187 (861)
T ss_dssp             SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            555677788888888876433 3566666666543 22222 3567789999999887664   4678888999999999


Q ss_pred             ccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHH
Q 007426           93 LASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDE  172 (604)
Q Consensus        93 LsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~e  172 (604)
                      +.+.+.+..+|.++.+++..+..++.+.    ......+..+.+.|++++......+...+--||..+++...- +. .+
T Consensus       188 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~-~~  261 (861)
T d2bpta1         188 AQSTETSKAVRLAALNALADSLIFIKNN----MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FM-KP  261 (861)
T ss_dssp             HSTTCCCHHHHHHHHHHHHHHGGGCHHH----HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GC-HH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHHHhHh----HHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HH-HH
Confidence            9888777778999999888887665421    122334566778888888888888888888899888875221 11 11


Q ss_pred             HHHHHHHH-HHHhhcCCccchh------------------------------------hHH-HHHHHHH-----------
Q 007426          173 MVNKVCQN-VAGALEEKSTQTN------------------------------------SHM-GLVMALA-----------  203 (604)
Q Consensus       173 lv~rlc~R-v~kaL~~ks~qtk------------------------------------Ahl-~LV~ALs-----------  203 (604)
                      .+.++... +...++.......                                    .++ .++.-+.           
T Consensus       262 ~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~  341 (861)
T d2bpta1         262 YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE  341 (861)
T ss_dssp             HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-C
T ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            11111111 1111111110000                                    000 0000000           


Q ss_pred             -----------HhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccC
Q 007426          204 -----------KHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQS  272 (604)
Q Consensus       204 -----------~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRf  272 (604)
                                 ..-.......+..+++...+++.....+.+|..|.+|..+|..++...+...+..+...++..+-++=.
T Consensus       342 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~  421 (861)
T d2bpta1         342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN  421 (861)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             chhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhc
Confidence                       000111111222233444444444455899999999999999988766655566677888888888888


Q ss_pred             CCccchhHHHHHHHHHH
Q 007426          273 DQMAYVKGASLEALQTA  289 (604)
Q Consensus       273 DKVk~VR~am~eALq~w  289 (604)
                      |.-+.||+++..++...
T Consensus       422 d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         422 DQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             CSCHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHHH
Confidence            99999999999888643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=0.0004  Score=69.10  Aligned_cols=248  Identities=12%  Similarity=0.143  Sum_probs=168.8

Q ss_pred             CchhHHHHHHHHHHHHhhcCCCChh-------HHHhhhccC---CCCC-C--------CchhhHHHHHHHHHHHhCCCCc
Q 007426           19 DADSRKSAMKALKSYVKDLDSKAIP-------LFLAQVSET---KENG-S--------VSGEYTISLYEVLARVHGANIV   79 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~dtlP-------~FLscV~dt---d~~~-s--------~vRke~I~Lle~LArvHG~~ia   79 (604)
                      +...+..++..|..+++....+..|       .+...+...   .... .        ..+..++..+..+.+..+..+.
T Consensus       513 ~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~  592 (861)
T d2bpta1         513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE  592 (861)
T ss_dssp             GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHH
Confidence            4567778899999999887654322       222222221   1111 1        1244556677778888888999


Q ss_pred             ccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHH
Q 007426           80 PQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKA  159 (604)
Q Consensus        80 PhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAA  159 (604)
                      |++..||..+++.+.+.++. .+|..+..++++++..+.      ++-...+..++..|..+|......+..-|+.++..
T Consensus       593 ~~~~~l~~~l~~~l~~~~~~-~v~~~~l~~l~~l~~~~~------~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~  665 (861)
T d2bpta1         593 PVADMLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLG------KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIAD  665 (861)
T ss_dssp             GGHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHG------GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcccCCch-hHHHHHHHHHHHHHHHhh------HHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999776653 378888889999986643      22234566788888899988887787777777877


Q ss_pred             HhccCCCCCCCHHHHHHHHHHHHHhhcCCccc--hh-hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHH-
Q 007426          160 LVDSDNWRFASDEMVNKVCQNVAGALEEKSTQ--TN-SHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQ-  235 (604)
Q Consensus       160 lVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~q--tk-Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq-  235 (604)
                      ++..-.  ..-.+.+.++.+.+...|+++..-  -| +-+.+++.++...+....+|...+++.....++......+.. 
T Consensus       666 i~~~~~--~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~  743 (861)
T d2bpta1         666 ISNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEA  743 (861)
T ss_dssp             HHHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHH
T ss_pred             HHHHhH--HHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHH
Confidence            766532  123456677888888888875432  23 567777777776666667888888888888888666555553 


Q ss_pred             ------HHHHHHHHHHHHHhhcC--CCchhhhHHHHHHHHHhccCCCc
Q 007426          236 ------KRLLAIQMLNFLMKSLD--PRSIFSELELIIEGMENCQSDQM  275 (604)
Q Consensus       236 ------~RKAAAeaL~~la~~~d--~~~L~se~~S~I~~LE~cRfDKV  275 (604)
                            .|.++.+++..|.....  +..|..+...++..+...--|..
T Consensus       744 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~  791 (861)
T d2bpta1         744 LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ  791 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence                  47899999888875442  23466667777766665544443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.00012  Score=67.61  Aligned_cols=251  Identities=11%  Similarity=0.089  Sum_probs=153.1

Q ss_pred             ChHHHHHHhhhc---CCchhHHHHHHHHHHHHhhcCC-----CChhHHHhhhccC-CCCCCCchhhHHHHHHHHHHHhCC
Q 007426            6 SPILRQELANLD---KDADSRKSAMKALKSYVKDLDS-----KAIPLFLAQVSET-KENGSVSGEYTISLYEVLARVHGA   76 (604)
Q Consensus         6 sp~~rqeL~KLs---~DRDT~~iA~~eLesiak~Ld~-----dtlP~FLscV~dt-d~~~s~vRke~I~Lle~LArvHG~   76 (604)
                      ..++...+.-|.   .+.+-+..|++.|..++..+..     ...+.++..+... ..+...+++.++..+..++..++.
T Consensus       170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence            344444444443   2344566677777777664421     1122333333332 222345799999999999999999


Q ss_pred             CCcccHHHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHhhcCC-----CC----------CccccchhhHHhhhchhHH
Q 007426           77 NIVPQIDSIMTTITKTL-ASSAGSFPLQQACSRVVPAIARYGID-----PT----------TPEDKKRHIIHSLCKPLSD  140 (604)
Q Consensus        77 ~iaPhL~KImstIVRRL-sDsdSS~~vR~AC~kvv~ALAry~id-----p~----------~~~~~~~~ii~sl~KPL~E  140 (604)
                      .+.||+..++-.++... .+.+-.  ++..+.+....++....+     ..          ....-....+..++.-|.+
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  327 (458)
T d1ibrb_         250 YMETYMGPALFAITIEAMKSDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  327 (458)
T ss_dssp             GCTTTTTTTHHHHHHHHHHCSSHH--HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHh
Confidence            99999988877765444 444432  455556677776632110     00          0001111222333333344


Q ss_pred             hhhccc-------chhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhh-hhHHH
Q 007426          141 SLLGSQ-------ESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHN-ALIVE  211 (604)
Q Consensus       141 aL~~qq-------e~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n-~~iie  211 (604)
                      .+....       ..+...|+.|+..+...     .+++.+..+.+.+...|+++..+.+ |=+.++++++... +..+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~  402 (458)
T d1ibrb_         328 TLTKQDENDDDDDWNPCKAAGVCLMLLATC-----CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK  402 (458)
T ss_dssp             HTTCCCSSCCTTCCSHHHHHHHHHHHHHHH-----TTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred             hhhcchhhhccccccHHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHH
Confidence            333211       24667788899998886     3566788899999999998776555 4455555655432 34456


Q ss_pred             HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCch-hhhHHHHHHHH
Q 007426          212 AYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSI-FSELELIIEGM  267 (604)
Q Consensus       212 a~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L-~se~~S~I~~L  267 (604)
                      ++...+++..++.|+    ..+...|.+|+.+|..++..+..... ..++.++|..|
T Consensus       403 ~~l~~i~~~l~~~l~----d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         403 PLVIQAMPTLIELMK----DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             TTTTTHHHHHHHGGG----CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            677788999999998    68999999999999999866532222 23456666554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=0.00013  Score=73.16  Aligned_cols=264  Identities=11%  Similarity=0.090  Sum_probs=157.4

Q ss_pred             hHHHHHHHHHHHHhhc-C----CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHh-CCCCcccHHHHHHHHHhhccC
Q 007426           22 SRKSAMKALKSYVKDL-D----SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVH-GANIVPQIDSIMTTITKTLAS   95 (604)
Q Consensus        22 T~~iA~~eLesiak~L-d----~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvH-G~~iaPhL~KImstIVRRLsD   95 (604)
                      .++.++.-+-.|++.- .    |+-+|..+..+.+.+.+ ...|.-++.+|..++..- ++.+.+|+..|+..++..|.+
T Consensus       105 ~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~-~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~  183 (876)
T d1qgra_         105 RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK  183 (876)
T ss_dssp             SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcC
Confidence            3444566777777653 2    33355555555543332 235777899999888644 456899999999999999988


Q ss_pred             CCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH
Q 007426           96 SAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN  175 (604)
Q Consensus        96 sdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~  175 (604)
                      ++.+..+|.++.++...+..+....    .........+.+-|.+++...+..++..+.-||..+++...- +..+.+..
T Consensus       184 ~~~~~~v~~~a~~~l~~~~~~~~~~----~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~~~~  258 (876)
T d1qgra_         184 EEPSNNVKLAATNALLNSLEFTKAN----FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGP  258 (876)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGGCHHH----HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG-GCHHHHTT
T ss_pred             cCccHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence            7777777887777777666554311    111222344666677777777777888999999998886321 11111111


Q ss_pred             HHHHHHHHhhcCCccchh----------------------------------------hHHH-HH---------------
Q 007426          176 KVCQNVAGALEEKSTQTN----------------------------------------SHMG-LV---------------  199 (604)
Q Consensus       176 rlc~Rv~kaL~~ks~qtk----------------------------------------Ahl~-LV---------------  199 (604)
                      .+.+-+...++.......                                        -++. ++               
T Consensus       259 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  338 (876)
T d1qgra_         259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD  338 (876)
T ss_dssp             THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence            111111112211110000                                        0000 00               


Q ss_pred             -------HHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccC
Q 007426          200 -------MALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQS  272 (604)
Q Consensus       200 -------~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRf  272 (604)
                             .+....-.......+..+++..++++...+.+.+|..|.+++.+|..++.......+..+...++..+-..=.
T Consensus       339 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~  418 (876)
T d1qgra_         339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK  418 (876)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence                   0000111111122222334445555555566899999999999999887666555677777888888877778


Q ss_pred             CCccchhHHHHHHHHHHHH
Q 007426          273 DQMAYVKGASLEALQTAKR  291 (604)
Q Consensus       273 DKVk~VR~am~eALq~wK~  291 (604)
                      |.-+.||.++..++...-+
T Consensus       419 d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         419 DPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHH
Confidence            9999999999988865443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.0035  Score=65.50  Aligned_cols=273  Identities=12%  Similarity=0.135  Sum_probs=180.0

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhhcCCCChhHHHhh--------hcc-----------C---CCCCCCchhhHH
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKDLDSKAIPLFLAQ--------VSE-----------T---KENGSVSGEYTI   64 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~Ld~dtlP~FLsc--------V~d-----------t---d~~~s~vRke~I   64 (604)
                      |.+.+.++.+..+.......++-|..++..+...-.| |...        +..           .   +.+.......++
T Consensus       565 ~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  643 (888)
T d1qbkb_         565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP-YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL  643 (888)
T ss_dssp             HHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence            3444555666634334445778888888888765544 2211        111           1   111122344567


Q ss_pred             HHHHHHHHHhCCCCcccHHH--HHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhh
Q 007426           65 SLYEVLARVHGANIVPQIDS--IMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSL  142 (604)
Q Consensus        65 ~Lle~LArvHG~~iaPhL~K--ImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL  142 (604)
                      .++..++...|..+.|++..  ++..+.+.|.|...  .||+.+..+++.|++++..      .-..-+..|+..|...|
T Consensus       644 ~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~--~vr~~a~~llgdl~~~~~~------~~~~~l~~~~~~l~~~L  715 (888)
T d1qbkb_         644 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP--EVRQSSFALLGDLTKACFQ------HVKPCIADFMPILGTNL  715 (888)
T ss_dssp             HHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHCGG------GTGGGHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHh
Confidence            78888999999998888764  78888888888774  4799999999999977542      12234567888888888


Q ss_pred             hcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchh---hHHHHHHHHHHhhhhHHHHhHHHHHH
Q 007426          143 LGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTN---SHMGLVMALAKHNALIVEAYARLLIQ  219 (604)
Q Consensus       143 ~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtk---Ahl~LV~ALs~~n~~iiea~g~~Ll~  219 (604)
                      ..+.-.+..-|+-|+.-++..-+-  .=.+.+..+.+.+.+.|+++...-.   .....+|=|+..+|..+.++...+++
T Consensus       716 ~~~~~~v~~~a~~~ig~ia~~~~~--~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~  793 (888)
T d1qbkb_         716 NPEFISVCNNATWAIGEISIQMGI--EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR  793 (888)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHTGG--GGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHH
Confidence            777666666666666655544221  1123566788888899987655432   24445566677778888888888888


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426          220 SGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE  295 (604)
Q Consensus       220 S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~  295 (604)
                      .-+..|..   -.|-..+..|-..|..++. .++..+...+..++.+.=+.+.-| +.+++++..-|+.+|+..++
T Consensus       794 ~~~~~l~~---~~d~~ek~~~~~g~~~~i~-~~p~~~~~~l~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~  864 (888)
T d1qbkb_         794 PWCTSLRN---IRDNEEKDSAFRGICTMIS-VNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGD  864 (888)
T ss_dssp             HHHHHHTT---SCCSHHHHHHHHHHHHHHH-HCGGGTGGGHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhcc---CCCcHHHHHHHHHHHHHHH-HCcHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHcCc
Confidence            88888874   2455667788899988774 445555555555555554444322 67899999999988876543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.0022  Score=62.18  Aligned_cols=250  Identities=11%  Similarity=0.096  Sum_probs=149.3

Q ss_pred             CchhHHHHHHHHHHHHh---------hcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccH--HHHHH
Q 007426           19 DADSRKSAMKALKSYVK---------DLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQI--DSIMT   87 (604)
Q Consensus        19 DRDT~~iA~~eLesiak---------~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL--~KIms   87 (604)
                      |.+.+..|+..+.+++.         -++.+.+|.++..+..+..  ..++.+++.+|.-++...... ...+  .-++.
T Consensus        89 ~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~--~~iq~~a~~~L~ni~~~~~~~-~~~~~~~g~i~  165 (503)
T d1wa5b_          89 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP--EMLQLEAAWALTNIASGTSAQ-TKVVVDADAVP  165 (503)
T ss_dssp             SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC--HHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCC--HHHHHHHHHHHHHHHcCCHHH-HHHHHhCCChH
Confidence            67777889998888652         2356778988888864332  347888988888777321111 1001  11344


Q ss_pred             HHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHH-hhhchhHHhhhcccchhhHHHHHHHHHHhccCCC
Q 007426           88 TITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIH-SLCKPLSDSLLGSQESLTAGAALCLKALVDSDNW  166 (604)
Q Consensus        88 tIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~-sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nw  166 (604)
                      .++.-|.+++  ..++..|..+++-|+...  +    +-...++. .++.||...|......++--++-+|..+......
T Consensus       166 ~l~~lL~s~~--~~i~~~a~~~L~nia~~~--~----~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         166 LFIQLLYTGS--VEVKEQAIWALGNVAGDS--T----DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHHHHHHCC--HHHHHHHHHHHHHHHTTC--H----HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHHHhcCCC--hhHHHHHHHHHHHHhhhh--H----HHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            5566666554  347888888888887321  1    11122222 3667788777777667777888888888865322


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007426          167 RFASDEMVNKVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYAR-LLIQSGLRILNAGPGEANSQKRLLAIQML  244 (604)
Q Consensus       167 r~Ap~elv~rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~-~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL  244 (604)
                       ......+..+.+-+..+|+....... .-+..+.-|+..+...+..... .+++..+++|.    ++++..+..|+.+|
T Consensus       238 -~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~----~~~~~v~~~al~~l  312 (503)
T d1wa5b_         238 -QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS----HESTLVQTPALRAV  312 (503)
T ss_dssp             -CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG----CSCHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhccc----CCchhhhhhHHHHH
Confidence             23445666788889999987654433 1222333344333332222211 24677778888    78999999999999


Q ss_pred             HHHHhhcCCCchhhhH--HHHHHHHHhccCCCccchhHHHHHHH
Q 007426          245 NFLMKSLDPRSIFSEL--ELIIEGMENCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       245 ~~la~~~d~~~L~se~--~S~I~~LE~cRfDKVk~VR~am~eAL  286 (604)
                      ..|+..-+  ......  ..++..|..+=...=+.||..+.-+|
T Consensus       313 ~nl~~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l  354 (503)
T d1wa5b_         313 GNIVTGND--LQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  354 (503)
T ss_dssp             HHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence            99874332  222222  23455555554444456666655554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.003  Score=57.51  Aligned_cols=176  Identities=11%  Similarity=0.100  Sum_probs=113.0

Q ss_pred             CchhHHHHHHHHHHHHhhcC-------CCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC-cccHHHHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKDLD-------SKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI-VPQIDSIMTTIT   90 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld-------~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i-aPhL~KImstIV   90 (604)
                      |.+.+..|++.|..++++.|       ...+|+.|.++.+.  +...+|.+++.+++.++..+...- .-.-..++..++
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s--~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            67788889999999987654       45689888876643  335689999999999997543210 001124566677


Q ss_pred             hhcc-CCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426           91 KTLA-SSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA  169 (604)
Q Consensus        91 RRLs-DsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A  169 (604)
                      +.|. +.+  ..+|..|..++..|++...     .....-+-.....+|...|.+.+..++.-++.||..+...+.   .
T Consensus       108 ~lL~~~~~--~~v~~~a~~aL~~l~~~~~-----~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---~  177 (264)
T d1xqra1         108 RLLDRDAC--DTVRVKALFAISCLVREQE-----AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP---E  177 (264)
T ss_dssp             HHHHHCSC--HHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---G
T ss_pred             HHhhcCCC--HHHHHHHHHHHHHHhccch-----hhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccH---H
Confidence            7663 443  3468888888888875521     111111112246889999988888899999999999887531   1


Q ss_pred             CHHHHHH--HHHHHHHhhcCCccchh-hHHHHHHHHHHhh
Q 007426          170 SDEMVNK--VCQNVAGALEEKSTQTN-SHMGLVMALAKHN  206 (604)
Q Consensus       170 p~elv~r--lc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n  206 (604)
                      -...+.+  +.+.++.+|+.++.... .-+..++.|+..+
T Consensus       178 ~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         178 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            1233332  68899999998765554 1233334444443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.02  Score=53.06  Aligned_cols=251  Identities=14%  Similarity=0.120  Sum_probs=141.5

Q ss_pred             CchhHHHHHHHHHHHHhh--------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCC----CcccHHHHH
Q 007426           19 DADSRKSAMKALKSYVKD--------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGAN----IVPQIDSIM   86 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~--------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~----iaPhL~KIm   86 (604)
                      |.+-+..|+..|..++.+        ...+.++.++..+...+..... -.....+...++......    -..+...++
T Consensus       112 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  190 (434)
T d1q1sc_         112 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA-CGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL  190 (434)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC-HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccch-HHHHHHHHHHHHHHhhcccccchhhhhhhHH
Confidence            455666677777776532        2467788888877654433221 111122333344443222    223456788


Q ss_pred             HHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhh-HHhhhchhHHhhhcccchhhHHHHHHHHHHhccCC
Q 007426           87 TTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHI-IHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDN  165 (604)
Q Consensus        87 stIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~i-i~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~n  165 (604)
                      ..+++-|.+.+.  .++..+..+++.|+..   +   .+....+ -..+..+|.+.+.+.+..++..|..||..++..  
T Consensus       191 ~~l~~ll~~~~~--~~~~~a~~~l~~l~~~---~---~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~--  260 (434)
T d1q1sc_         191 PTLVRLLHHNDP--EVLADSCWAISYLTDG---P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--  260 (434)
T ss_dssp             HHHHHHTTCSCH--HHHHHHHHHHHHHTSS---C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHhcccc--chhhhHHhhhcccchh---h---hhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhh--
Confidence            888887777663  3455555555555422   1   1111111 123678888888888888999999999988864  


Q ss_pred             CCCCCHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhH-HHHHHHHHHHhcCCCCCCCHHHHH
Q 007426          166 WRFASDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYA-RLLIQSGLRILNAGPGEANSQKRL  238 (604)
Q Consensus       166 wr~Ap~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g-~~Ll~S~l~~L~~~~~ssDWq~RK  238 (604)
                          .++...     .+.+.+..+|+++...-+ .-+..+..|+..+......-. ..+++..+..|.    +.++..|+
T Consensus       261 ----~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~----~~~~~v~~  332 (434)
T d1q1sc_         261 ----TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS----KADFKTQK  332 (434)
T ss_dssp             ----CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----SSCHHHHH
T ss_pred             ----hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh----ccChHHHH
Confidence                233222     345568888887554332 233344444443332211111 125677778888    78999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhhH-HHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          239 LAIQMLNFLMKSLDPRSIFSEL-ELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       239 AAAeaL~~la~~~d~~~L~se~-~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      .|+.+|..++...+.+.+.... ..+|..|-..=-.+=+.++..+.++|..
T Consensus       333 ~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~  383 (434)
T d1q1sc_         333 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN  383 (434)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            9999999988665533332221 2234444433223345567777777643

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0081  Score=58.14  Aligned_cols=244  Identities=14%  Similarity=0.117  Sum_probs=146.3

Q ss_pred             CchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCc-ccHHHHHHHH
Q 007426           19 DADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIV-PQIDSIMTTI   89 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~ia-PhL~KImstI   89 (604)
                      |.+-+.-|+.-|-.++..-        +...+|.|+.-+.+.+.   .++..|+..++-+|..+...-- -.-..++..+
T Consensus       133 ~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~---~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L  209 (503)
T d1wa5b_         133 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV---EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI  209 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH---HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCCh---hHHHHHHHHHHHHhhhhHHHHHHHHhhcccccc
Confidence            4445555777776665432        35678988888875433   4899999999998864321100 0001134455


Q ss_pred             HhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHHhccCCCCCC
Q 007426           90 TKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFA  169 (604)
Q Consensus        90 VRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~A  169 (604)
                      ++-|.+.+.+  ++..+..++..|+++-. +..    ...++..++..|...|...+..+..-++.||..+.+.      
T Consensus       210 ~~ll~~~~~~--~~~~~~~~l~nl~~~~~-~~~----~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~------  276 (503)
T d1wa5b_         210 LGLFNSNKPS--LIRTATWTLSNLCRGKK-PQP----DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG------  276 (503)
T ss_dssp             HHGGGSCCHH--HHHHHHHHHHHHHCCSS-SCC----CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS------
T ss_pred             hhhcccCCHH--HHHHHHHHHHHHhcCCc-cch----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC------
Confidence            6666666643  44555566666665422 111    1233445666777777777777888999999999985      


Q ss_pred             CHHHHH-----HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHh-HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007426          170 SDEMVN-----KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAY-ARLLIQSGLRILNAGPGEANSQKRLLAIQ  242 (604)
Q Consensus       170 p~elv~-----rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~-g~~Ll~S~l~~L~~~~~ssDWq~RKAAAe  242 (604)
                      +.+...     .+++++..+|..++.... .-+..++.++..+......- -..+++....+|+    +.++..|+.|+-
T Consensus       277 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~----~~~~~i~~~~~~  352 (503)
T d1wa5b_         277 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS----SPKENIKKEACW  352 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHH
T ss_pred             CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhc----CCCHHHHHHHHH
Confidence            333322     377889999987765443 34555666665543322211 1124566667776    789999999999


Q ss_pred             HHHHHHhhcCCCchh-----hhHHHHHHHHHhccCCCccchhHHHHHHHH
Q 007426          243 MLNFLMKSLDPRSIF-----SELELIIEGMENCQSDQMAYVKGASLEALQ  287 (604)
Q Consensus       243 aL~~la~~~d~~~L~-----se~~S~I~~LE~cRfDKVk~VR~am~eALq  287 (604)
                      +|..++.. ++..+.     ..+..++..|+..-+    .|+..+..||-
T Consensus       353 ~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~----~v~~~a~~~l~  397 (503)
T d1wa5b_         353 TISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEY----KTKKEACWAIS  397 (503)
T ss_dssp             HHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCH----HHHHHHHHHHH
T ss_pred             HHHHHhhc-cHHHHHHHHHccccchhHHhcccCCh----hHHHHHHHHHH
Confidence            99998642 222221     123556677765433    35655555554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.0082  Score=55.83  Aligned_cols=213  Identities=11%  Similarity=0.160  Sum_probs=129.3

Q ss_pred             CchhhHHHHHHHHHHHhCCCCcccH--HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhH-Hhh
Q 007426           58 VSGEYTISLYEVLARVHGANIVPQI--DSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHII-HSL  134 (604)
Q Consensus        58 ~vRke~I~Lle~LArvHG~~iaPhL--~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii-~sl  134 (604)
                      .++..++..+..|+..+.. ..+.+  ..++..++.-+.+.+  ..++.++..+++.|+..      ..+....++ ..+
T Consensus       203 ~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~al~~l~~l~~~------~~~~~~~~~~~~~  273 (434)
T d1q1sc_         203 EVLADSCWAISYLTDGPNE-RIEMVVKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTG------TDEQTQKVIDAGA  273 (434)
T ss_dssp             HHHHHHHHHHHHHTSSCHH-HHHHHHTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTS------CHHHHHHHHHTTG
T ss_pred             chhhhHHhhhcccchhhhh-hHHHHhhcccchhcccccccch--hhhhhchhhhhhhHHhh------hhHHHHHHHhccc
Confidence            4677777777777643221 11111  224455566566654  34677777777766532      112222332 337


Q ss_pred             hchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh-hHHHHHHHHHHhhh-h---
Q 007426          135 CKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN-SHMGLVMALAKHNA-L---  208 (604)
Q Consensus       135 ~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~-~---  208 (604)
                      .++|...|.+....++.-|+.+|..+.....  .....+.+ .+.+.+..+|..++...+ .-..+++.++.... .   
T Consensus       274 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~  351 (434)
T d1q1sc_         274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV  351 (434)
T ss_dssp             GGGHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             cchHHHhhcccchhhhHHHHHHHhhhccccc--hhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            7889998888888899999999999987521  00111222 267889999998776665 22334444444321 1   


Q ss_pred             -HHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHH------HHHHHHHhccCCCccchhHH
Q 007426          209 -IVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSELE------LIIEGMENCQSDQMAYVKGA  281 (604)
Q Consensus       209 -iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~------S~I~~LE~cRfDKVk~VR~a  281 (604)
                       .++.+   +++..++.|+    +.|+..+++|.++|..|+...+...-.....      ..++.+|.-+.++=+.||+.
T Consensus       352 ~l~~~~---~i~~L~~ll~----~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~  424 (434)
T d1q1sc_         352 YLVHCG---IIEPLMNLLS----AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA  424 (434)
T ss_dssp             HHHHTT---CHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHCC---cHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence             11111   3556667777    7899999999999999987554221111112      23567788888888999998


Q ss_pred             HHHHHHH
Q 007426          282 SLEALQT  288 (604)
Q Consensus       282 m~eALq~  288 (604)
                      +...|+.
T Consensus       425 a~~il~~  431 (434)
T d1q1sc_         425 SLNLIEK  431 (434)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887763

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.027  Score=54.60  Aligned_cols=219  Identities=14%  Similarity=0.128  Sum_probs=133.7

Q ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhh-------cCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCC-cc
Q 007426            9 LRQELANLDKDADSRKSAMKALKSYVKD-------LDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANI-VP   80 (604)
Q Consensus         9 ~rqeL~KLs~DRDT~~iA~~eLesiak~-------Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~i-aP   80 (604)
                      +-+.|.+-. |.+.+..|+..|..+.++       ++...||.++..|.+.+   ..++++++..|..||..+...- .-
T Consensus        64 l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~  139 (529)
T d1jdha_          64 IVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAV  139 (529)
T ss_dssp             HHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCC---HHHHHHHHHHHHHhhcccchhhhHH
Confidence            334555556 888999999999776532       13567999999997543   3589999999999988665431 11


Q ss_pred             cHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHh-hhchhHHhhhccc-chhhHHHHHHHH
Q 007426           81 QIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHS-LCKPLSDSLLGSQ-ESLTAGAALCLK  158 (604)
Q Consensus        81 hL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~s-l~KPL~EaL~~qq-e~vQsGAALCLA  158 (604)
                      .-...+..+++-|.+++  ..++..+..++..|+..  +    .+....++.. ...||...|.+.. +.++..++-+|.
T Consensus       140 ~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~--~----~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~  211 (529)
T d1jdha_         140 RLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYG--N----QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  211 (529)
T ss_dssp             HHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTT--C----HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHccC--hHHHHHHHHHHHHHhhh--h----hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHh
Confidence            12334566777776654  45677777778877732  1    1112222222 4678888887655 456666666666


Q ss_pred             HHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHH-HHhHHHHHHHHHHHhcCCCCCCCHHH
Q 007426          159 ALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIV-EAYARLLIQSGLRILNAGPGEANSQK  236 (604)
Q Consensus       159 AlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~ii-ea~g~~Ll~S~l~~L~~~~~ssDWq~  236 (604)
                      .+-....   ....+++ ...+.+..+|+.++....  ...+++|........ .......++..+++|+    ++|...
T Consensus       212 ~ls~~~~---~~~~~~~~g~~~~L~~ll~~~~~~~~--~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~----~~~~~~  282 (529)
T d1jdha_         212 VLSVCSS---NKPAIVEAGGMQALGLHLTDPSQRLV--QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINV  282 (529)
T ss_dssp             HHTTSTT---HHHHHHHTTHHHHHHTTTTSSCHHHH--HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT----CSCHHH
T ss_pred             hhhcccc---ccchhhhhhhhhhHHHHhcccchhhh--hhhhhHHHhccccccchhhhhhcchhhhhhcc----cccHHH
Confidence            6543211   1112222 256678888887764443  233334333221100 0011235777778887    789999


Q ss_pred             HHHHHHHHHHHH
Q 007426          237 RLLAIQMLNFLM  248 (604)
Q Consensus       237 RKAAAeaL~~la  248 (604)
                      +..|+.+|..|.
T Consensus       283 ~~~a~~~L~~l~  294 (529)
T d1jdha_         283 VTCAAGILSNLT  294 (529)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc
Confidence            999999999875

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.018  Score=52.20  Aligned_cols=203  Identities=12%  Similarity=0.105  Sum_probs=119.3

Q ss_pred             HHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHH--HHHHH-hhccCCCCChhhH
Q 007426           27 MKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSI--MTTIT-KTLASSAGSFPLQ  103 (604)
Q Consensus        27 ~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KI--mstIV-RRLsDsdSS~~vR  103 (604)
                      ++++|.+.+-|+....|..-.....+++   ..++.++..|..|+  |....+=++-++  +..++ +-|.+++.  .+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Al~~L~~L~--~~~d~a~~l~~~gg~~~ll~~ll~s~~~--~vr   76 (264)
T d1xqra1           4 VEQMKSCLRVLSQPMPPTAGEAEQAADQ---QEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGAA--GLR   76 (264)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHH---HHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHTTTTCSSH--HHH
T ss_pred             HHHHHHHHHHhhccCcchHHHhhcCCCH---HHHHHHHHHHHHHH--cCHHHHHHHHHcCCHHHHHHHHhCCCCH--HHH
Confidence            4566666666643333333222222222   35777888788776  332222222222  23334 44555553  478


Q ss_pred             HHHHHHHHHHHhhcCCCCCccccchhh-HHhhhchhHHhhhccc-chhhHHHHHHHHHHhccCCCCCCCHHHHH--HHHH
Q 007426          104 QACSRVVPAIARYGIDPTTPEDKKRHI-IHSLCKPLSDSLLGSQ-ESLTAGAALCLKALVDSDNWRFASDEMVN--KVCQ  179 (604)
Q Consensus       104 ~AC~kvv~ALAry~idp~~~~~~~~~i-i~sl~KPL~EaL~~qq-e~vQsGAALCLAAlVEs~nwr~Ap~elv~--rlc~  179 (604)
                      ...+.+++.|+.+-  |    .-...+ -.-.+.+|+..|.... ..++..|+.+|..++....   .....+.  ...+
T Consensus        77 ~~A~~~L~~l~~~~--~----~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~~gi~  147 (264)
T d1xqra1          77 WRAAQLIGTCSQNV--A----AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE---AGLLQFLRLDGFS  147 (264)
T ss_dssp             HHHHHHHHHHHTTC--H----HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHH--H----HHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccch---hhHHHHHHhhhhh
Confidence            88889999998641  1    111111 1235778888776544 4578889999999886421   0111221  2456


Q ss_pred             HHHHhhcCCccchh-hHHHHHHHHHHhhhhHHHHhHHH-HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHh
Q 007426          180 NVAGALEEKSTQTN-SHMGLVMALAKHNALIVEAYARL-LIQSGLRILNAGPGEANSQKRLLAIQMLNFLMK  249 (604)
Q Consensus       180 Rv~kaL~~ks~qtk-Ahl~LV~ALs~~n~~iiea~g~~-Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~  249 (604)
                      -+..+|++.+...+ .-+.++..|+..++......... .++...+.|.    +.|-..|..|+.+|..|+.
T Consensus       148 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~----~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         148 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR----TEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT----SCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHc----CCCHHHHHHHHHHHHHHHh
Confidence            68888887765554 34566666666665544333332 5788888887    6788999999999999863

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.025  Score=54.81  Aligned_cols=253  Identities=14%  Similarity=0.089  Sum_probs=139.6

Q ss_pred             hHHHHHHhhhcCCchhHHHHHHHHHHHHhhc--------CCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCC-
Q 007426            7 PILRQELANLDKDADSRKSAMKALKSYVKDL--------DSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGAN-   77 (604)
Q Consensus         7 p~~rqeL~KLs~DRDT~~iA~~eLesiak~L--------d~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~-   77 (604)
                      |.+-+.|+  +.|...++-|+.-|..+++.-        +.+.+|.++..+..+.+  ..+++.++..+..|+. |... 
T Consensus        20 p~L~~lL~--~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~--~~~~~~a~~~L~~l~~-~~~~~   94 (529)
T d1jdha_          20 PELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND--VETARCTAGTLHNLSH-HREGL   94 (529)
T ss_dssp             HHHHHHHT--CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHTT-SHHHH
T ss_pred             HHHHHHHc--CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhC-CchhH
Confidence            44444443  337778899999998887532        34458888887765443  3479999999988864 2211 


Q ss_pred             --CcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCCCccccchhh-HHhhhchhHHhhhcccchhhHHHH
Q 007426           78 --IVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPTTPEDKKRHI-IHSLCKPLSDSLLGSQESLTAGAA  154 (604)
Q Consensus        78 --iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~~~~~~~~~i-i~sl~KPL~EaL~~qqe~vQsGAA  154 (604)
                        ++-+  ..+..+++-|++++.  .++..|..+++-|+..-  +    ..+..+ -.-.+.||++-|...+..++.-+|
T Consensus        95 ~~i~~~--g~i~~Li~lL~~~~~--~v~~~a~~aL~~l~~~~--~----~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~  164 (529)
T d1jdha_          95 LAIFKS--GGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQ--E----GAKMAVRLAGGLQKMVALLNKTNVKFLAITT  164 (529)
T ss_dssp             HHHHHT--THHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHC--T----THHHHHHHHTHHHHHHHGGGCCCHHHHHHHH
T ss_pred             HHHHHC--CCHHHHHHHhCCCCH--HHHHHHHHHHHHhhccc--c----hhhhHHHhcCCchHHHHHHHccChHHHHHHH
Confidence              1111  236788888887764  35666677777666431  1    111111 223578999988888888999999


Q ss_pred             HHHHHHhccCCCCCCCHHHHH-HHHHHHHHhhcCCccchh--hHHHHHHHHHHh--h-hhHHHHhHHHHHHHHHHHhcCC
Q 007426          155 LCLKALVDSDNWRFASDEMVN-KVCQNVAGALEEKSTQTN--SHMGLVMALAKH--N-ALIVEAYARLLIQSGLRILNAG  228 (604)
Q Consensus       155 LCLAAlVEs~nwr~Ap~elv~-rlc~Rv~kaL~~ks~qtk--Ahl~LV~ALs~~--n-~~iiea~g~~Ll~S~l~~L~~~  228 (604)
                      .||..+...+..  ....++. ...+.+..+|........  .-..++.-++..  + ..+++.++   ++.....|.  
T Consensus       165 ~~L~~l~~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~---~~~L~~ll~--  237 (529)
T d1jdha_         165 DCLQILAYGNQE--SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG---MQALGLHLT--  237 (529)
T ss_dssp             HHHHHHHTTCHH--HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH---HHHHHTTTT--
T ss_pred             HHHHHHhhhhhH--HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhh---hhhHHHHhc--
Confidence            999999865321  0111111 134456666654332211  112222222211  1 11222222   333344444  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHH
Q 007426          229 PGEANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEAL  286 (604)
Q Consensus       229 ~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eAL  286 (604)
                        ..+...+..|+.+|..+...... .+.  ...++..|-..-.+.=..|+..+..+|
T Consensus       238 --~~~~~~~~~a~~~l~~ls~~~~~-~~~--~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         238 --DPSQRLVQNCLWTLRNLSDAATK-QEG--MEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             --SSCHHHHHHHHHHHHHHHTTCTT-CSC--CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             --ccchhhhhhhhhHHHhccccccc-hhh--hhhcchhhhhhcccccHHHHHHHHHHH
Confidence              78888899999999887644322 221  123333333322222234666665555

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.23  Score=50.65  Aligned_cols=265  Identities=12%  Similarity=0.123  Sum_probs=145.6

Q ss_pred             CchhHHHH-HHHHHHHHhhcCCCChhHHHhhhcc-------CCCCCCCchhhHHHHHHHHHHH-----h----CCCCccc
Q 007426           19 DADSRKSA-MKALKSYVKDLDSKAIPLFLAQVSE-------TKENGSVSGEYTISLYEVLARV-----H----GANIVPQ   81 (604)
Q Consensus        19 DRDT~~iA-~~eLesiak~Ld~dtlP~FLscV~d-------td~~~s~vRke~I~Lle~LArv-----H----G~~iaPh   81 (604)
                      |-++.+.| ..-|..+++......++.++.-+.+       .....-..++.++.+++.++..     +    .....+.
T Consensus       373 ~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~  452 (959)
T d1wa5c_         373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (959)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             ccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence            44455554 4455666666554445554433322       1111123466677777776531     1    1223344


Q ss_pred             HHHHHHHHHhhccCCCCC-hhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHHHH
Q 007426           82 IDSIMTTITKTLASSAGS-FPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLKAL  160 (604)
Q Consensus        82 L~KImstIVRRLsDsdSS-~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLAAl  160 (604)
                      .+-++..+.-.|...+.. ..+|..+...++..+...         ....+..+..-|+..|..++..|+.-||.||...
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~---------~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~  523 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---------TKAQLIELMPILATFLQTDEYVVYTYAAITIEKI  523 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---------CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhc---------cHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            444555555555443322 224554444444443221         1234567788888888877778999999999999


Q ss_pred             hccCCC------CCCC---HHHHHHHHHHHHHhhcCCccch-h-----hHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHh
Q 007426          161 VDSDNW------RFAS---DEMVNKVCQNVAGALEEKSTQT-N-----SHMGLVMALAKHNALIVEAYARLLIQSGLRIL  225 (604)
Q Consensus       161 VEs~nw------r~Ap---~elv~rlc~Rv~kaL~~ks~qt-k-----Ahl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L  225 (604)
                      ++...-      .+..   .+.+..+...+..+|....... +     ..+..++.+++..+..+.++...+++....++
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~  603 (959)
T d1wa5c_         524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV  603 (959)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH
T ss_pred             HHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            874210      0111   1234455555555554432221 1     36677777777777777788888888777766


Q ss_pred             cCCCC-CCCHHHHHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhhhc
Q 007426          226 NAGPG-EANSQKRLLAIQMLNFLMKSLDPRSIFSELELIIEGMENCQSDQMAYVKGASLEALQTAKRIAAE  295 (604)
Q Consensus       226 ~~~~~-ssDWq~RKAAAeaL~~la~~~d~~~L~se~~S~I~~LE~cRfDKVk~VR~am~eALq~wK~Ia~~  295 (604)
                      ....+ ..+-..+....+.|..++...++.........++..+...--..+....   .+++++|..+...
T Consensus       604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~---~~~~~l~~~~~~~  671 (959)
T d1wa5c_         604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFI---PYVFQIIAFVVEQ  671 (959)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTH---HHHHHHHHHHHHH
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHH---HHHHHHHHHHHHh
Confidence            53222 3456778888899999988777655554445555555443322233333   3567777766544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.15  Score=43.98  Aligned_cols=117  Identities=8%  Similarity=0.084  Sum_probs=69.7

Q ss_pred             CchhHHHHHHHHHHHHhhcCCCChhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhh-ccCCC
Q 007426           19 DADSRKSAMKALKSYVKDLDSKAIPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKT-LASSA   97 (604)
Q Consensus        19 DRDT~~iA~~eLesiak~Ld~dtlP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRR-LsDsd   97 (604)
                      |+..|..|+..|-.+-   +.+.+|.++..+.|.+   ..+|..++..|..+..     .....+.++..+... |.|++
T Consensus        32 ~~~vR~~A~~~L~~~~---~~~~~~~l~~~l~d~~---~~vr~~a~~aL~~l~~-----~~~~~~~~~~~l~~~~l~d~~  100 (276)
T d1oyza_          32 NSLKRISSARVLQLRG---GQDAVRLAIEFCSDKN---YIRRDIGAFILGQIKI-----CKKCEDNVFNILNNMALNDKS  100 (276)
T ss_dssp             SHHHHHHHHHHHHHHC---CHHHHHHHHHHHTCSS---HHHHHHHHHHHHHSCC-----CTTTHHHHHHHHHHHHHHCSC
T ss_pred             CHHHHHHHHHHHHhhC---CHhHHHHHHHHHcCCC---HHHHHHHHHHHHHhcc-----ccccccchHHHHHHHHhcCCC
Confidence            5558888999887764   3567888888876543   4588888888766521     122233333333333 35665


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCCccccchhhHHhhhchhHHhhhcccchhhHHHHHHHH
Q 007426           98 GSFPLQQACSRVVPAIARYGIDPTTPEDKKRHIIHSLCKPLSDSLLGSQESLTAGAALCLK  158 (604)
Q Consensus        98 SS~~vR~AC~kvv~ALAry~idp~~~~~~~~~ii~sl~KPL~EaL~~qqe~vQsGAALCLA  158 (604)
                      .  .||.++..+++.+...-.          .....++.+|...+......++..|+-++.
T Consensus       101 ~--~vr~~a~~aL~~~~~~~~----------~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~  149 (276)
T d1oyza_         101 A--CVRATAIESTAQRCKKNP----------IYSPKIVEQSQITAFDKSTNVRRATAFAIS  149 (276)
T ss_dssp             H--HHHHHHHHHHHHHHHHCG----------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             h--hHHHHHHHHHHHHccccc----------hhhHHHHHHHHHHhcCcchHHHHHHHHHHh
Confidence            3  368888888877764311          112335555666666555556665554443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.27  E-value=0.025  Score=45.01  Aligned_cols=84  Identities=12%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             HHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhhhH
Q 007426          181 VAGALEEKSTQTNSHMGLVMALAKHNALIVEAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSLDPRSIFSEL  260 (604)
Q Consensus       181 v~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~d~~~L~se~  260 (604)
                      +.++|++++....  ..++.+|...+.       ...++..++.|.    ..||..|.+|+++|..+-           -
T Consensus        27 L~~~l~d~~~~vR--~~a~~~L~~~~~-------~~~~~~L~~~l~----d~~~~VR~~a~~aL~~i~-----------~   82 (111)
T d1te4a_          27 LLESLSNEDWRIR--GAAAWIIGNFQD-------ERAVEPLIKLLE----DDSGFVRSGAARSLEQIG-----------G   82 (111)
T ss_dssp             HHHGGGCSCHHHH--HHHHHHHGGGCS-------HHHHHHHHHHHH----HCCTHHHHHHHHHHHHHC-----------S
T ss_pred             HHHHHcCCCHHHH--HHHHHHHHhcch-------hhhHHHHHhhhc----cchhHHHHHHHHHHHHhC-----------c
Confidence            4456776654332  334445554432       223566677787    689999999999998751           1


Q ss_pred             HHHHHHHHhccCCCccchhHHHHHHHHH
Q 007426          261 ELIIEGMENCQSDQMAYVKGASLEALQT  288 (604)
Q Consensus       261 ~S~I~~LE~cRfDKVk~VR~am~eALq~  288 (604)
                      ..++..|+..-.|.-+.||.++.+||++
T Consensus        83 ~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          83 ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            3466777777778999999999999874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.69  Score=39.66  Aligned_cols=116  Identities=8%  Similarity=0.008  Sum_probs=73.0

Q ss_pred             hhHHHhhhccCCCCCCCchhhHHHHHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCCC
Q 007426           42 IPLFLAQVSETKENGSVSGEYTISLYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDPT  121 (604)
Q Consensus        42 lP~FLscV~dtd~~~s~vRke~I~Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp~  121 (604)
                      ...++..|.|.+   +.+|..++..|..+.    .      +..+..+++.|.|++.  .||..|..+.+.+..-     
T Consensus        21 ~~~L~~~L~d~~---~~vR~~A~~~L~~~~----~------~~~~~~l~~~l~d~~~--~vr~~a~~aL~~l~~~-----   80 (276)
T d1oyza_          21 DDELFRLLDDHN---SLKRISSARVLQLRG----G------QDAVRLAIEFCSDKNY--IRRDIGAFILGQIKIC-----   80 (276)
T ss_dssp             HHHHHHHTTCSS---HHHHHHHHHHHHHHC----C------HHHHHHHHHHHTCSSH--HHHHHHHHHHHHSCCC-----
T ss_pred             HHHHHHHhcCCC---HHHHHHHHHHHHhhC----C------HhHHHHHHHHHcCCCH--HHHHHHHHHHHHhccc-----
Confidence            445566555433   469999999987762    2      5678888888888874  4788888777665311     


Q ss_pred             CccccchhhHHhhhchhHHhhhc-ccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCc
Q 007426          122 TPEDKKRHIIHSLCKPLSDSLLG-SQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKS  189 (604)
Q Consensus       122 ~~~~~~~~ii~sl~KPL~EaL~~-qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks  189 (604)
                      .      ..-.....+|...+.. ++..+...|+-+|..+.....      ....++.+.+...++++.
T Consensus        81 ~------~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~~~~~~~l~~~~~d~~  137 (276)
T d1oyza_          81 K------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKS  137 (276)
T ss_dssp             T------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSC
T ss_pred             c------ccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc------hhhHHHHHHHHHHhcCcc
Confidence            0      0112234455665554 445688899999988776421      223456666666666654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.64  E-value=0.15  Score=40.21  Aligned_cols=86  Identities=16%  Similarity=0.220  Sum_probs=60.0

Q ss_pred             hchhHHhhhcccchhhHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHhhhhHHHHhH
Q 007426          135 CKPLSDSLLGSQESLTAGAALCLKALVDSDNWRFASDEMVNKVCQNVAGALEEKSTQTNSHMGLVMALAKHNALIVEAYA  214 (604)
Q Consensus       135 ~KPL~EaL~~qqe~vQsGAALCLAAlVEs~nwr~Ap~elv~rlc~Rv~kaL~~ks~qtkAhl~LV~ALs~~n~~iiea~g  214 (604)
                      +.||.++|..++..+...|+.||...-        ..    +..+.+.++|++++...  -...+.+|.+++.       
T Consensus        24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~----~~~~~L~~~l~d~~~~V--R~~a~~aL~~i~~-------   82 (111)
T d1te4a_          24 FEPLLESLSNEDWRIRGAAAWIIGNFQ--------DE----RAVEPLIKLLEDDSGFV--RSGAARSLEQIGG-------   82 (111)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGC--------SH----HHHHHHHHHHHHCCTHH--HHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcc--------hh----hhHHHHHhhhccchhHH--HHHHHHHHHHhCc-------
Confidence            467889999888889999999986431        22    34456778888775433  3455666666643       


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007426          215 RLLIQSGLRILNAGPGEANSQKRLLAIQMLN  245 (604)
Q Consensus       215 ~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~  245 (604)
                      ...++...+.|+    ..|+..|.+|+++|.
T Consensus        83 ~~~~~~L~~ll~----d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ERVRAAMEKLAE----TGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHHTT----SCCTHHHHHHHHHGG
T ss_pred             cchHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence            233555566777    689999999999884

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.69  E-value=15  Score=36.75  Aligned_cols=180  Identities=8%  Similarity=0.060  Sum_probs=100.5

Q ss_pred             HHHHHHHHhCCCCcccHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhcCCC-----CCccccchhhHHhhhchhHH
Q 007426           66 LYEVLARVHGANIVPQIDSIMTTITKTLASSAGSFPLQQACSRVVPAIARYGIDP-----TTPEDKKRHIIHSLCKPLSD  140 (604)
Q Consensus        66 Lle~LArvHG~~iaPhL~KImstIVRRLsDsdSS~~vR~AC~kvv~ALAry~idp-----~~~~~~~~~ii~sl~KPL~E  140 (604)
                      .+..+.+.-.....++++.++..+++.|.|++  .+||..+..++..+.....+.     ....+.-...+..++..|+.
T Consensus       478 ~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~  555 (959)
T d1wa5c_         478 AIKYIYTFRNQLTKAQLIELMPILATFLQTDE--YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA  555 (959)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHH
Confidence            33444444455667899999999999998875  567877777777666433221     11122223345566667777


Q ss_pred             hhhcccchhhH----H-HHHHHHHHhccCCCCCCC--HHHHHHHHHHHHHhhcCCccch-h-hHHHHHHHHHHhh-hhHH
Q 007426          141 SLLGSQESLTA----G-AALCLKALVDSDNWRFAS--DEMVNKVCQNVAGALEEKSTQT-N-SHMGLVMALAKHN-ALIV  210 (604)
Q Consensus       141 aL~~qqe~vQs----G-AALCLAAlVEs~nwr~Ap--~elv~rlc~Rv~kaL~~ks~qt-k-Ahl~LV~ALs~~n-~~ii  210 (604)
                      +|.......+.    . .--||...|+...-...|  +.+++.+.+.+..+.+++.-.. . ..+..+..+.+.. +...
T Consensus       556 ~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~  635 (959)
T d1wa5c_         556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL  635 (959)
T ss_dssp             HHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred             HHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhH
Confidence            77665543321    1 233566666653211122  2444445554445555543221 1 3444555555543 4455


Q ss_pred             HHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhc
Q 007426          211 EAYARLLIQSGLRILNAGPGEANSQKRLLAIQMLNFLMKSL  251 (604)
Q Consensus       211 ea~g~~Ll~S~l~~L~~~~~ssDWq~RKAAAeaL~~la~~~  251 (604)
                      ......+++....+++.    ......-.+.+.+..++...
T Consensus       636 ~~l~~~l~p~i~~~~~~----~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         636 PLLVDSMMPTFLTVFSE----DIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHHHHHHHHHHHHHHHT----TCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHHhC
Confidence            55666678888888873    33334456777777766544