Citrus Sinensis ID: 007472

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
Protein Sequence
MQSVVDLAVLTVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKKPNTSSLLVVNRFSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDCSRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLGLTPQQKPDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHEHcccccEEEEEEEEccccccHHcccHHHHHHHHcccccccccccccHHHcccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHccHcccHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccEcEcccccccccccccccccccccccccccHHHHHEcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHcccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MQSVVDLAVLTVKRERRLFLVRIQQITtkglswnwdpqrlyQIKSyccsssidfkmdpeelpdyceviehpmdfgtvrnklanGAYATLEQFEKDVFLICSNamqynapdtiyFRQARSIHELAKKNFENlrqdsddnepetkvvrrgrpptknfkkplgrpslerarsdfssdvtlasgaentaltnrdlgngtphleksgftdssrrfsgswndlytgclaenklerndevslskgysmkhgkkqvvldenrrNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERclpagvrfgpgwvvendlapqrplllssatvglpsssqpslipenlssasthstielkgdklterpeaedssekpgpstqssldghfkkpntssllvvnrfsepakEKAEIIEGLKSQLNLVNssmgaintrppfqihqnsvirpgmngfngtygfnmpsqmgkligaagpagfsfqspqmvdrisrtdtnfvqpvtasslnsddpkldcSRSLQnleslgsapslpgnhqptwqvsphpkpdlgltpqqkpdavppdlnvrfrspgspnssrvdstqpdlalql
Flexible Loop (DISEMBL)
mqsvvdlavltvkrerrlfLVRIQqittkglswnwdpqRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNfenlrqdsddnepetkvvrrgrpptknfkkplgrpslerarsdfssdvtlasgaentaltnrdlgngtphleksgftdssrrfSGSWNDLYTGCLAENKLERNDEVslskgysmkhgkkqvvldenRRNTYKQFhqslressvltTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLPSSSQPslipenlssasthstielkgdklterpeaedssekpgpstqssldghfkkpnTSSLLVVNRFSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPvtasslnsddpkLDCSRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLGLTPQQKPDAVPPDLNVRfrspgspnssrvdstqpdlalql
Low Complexity Region (SEG)
MQSVVDLAVLTVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKKPNTSSLLVVNRFSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDCSRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLGLTPQQKPDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL
Disordered region (IsUnstruct)
***VVDLAVLTVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLIC************YF*************************************************************************************************GSWNDLYTGCLAE*********************************************VLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLL**************************************************************************************I**L***LNLVN**MGAINTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAG*******************************************************************************************************************
Disordered Region (DISOPRED)
MQSVVDL***************************WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFE**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PDLALQL
Disordered Region (DISEMBL)
MQSVVDLAVLTVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD***********RRGRPPTKNFKKPLGRPSLERARSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSAT**********************STIELKGDKL**********************GHFKKPNTSSLLVVNRFSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDCSRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLGLTPQQKPDAVPPDLNVRFRS********************
Disordered Region (DISPRO)
*QSVVDLAVLTVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD**********************************************************TPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQ****************************************************************************************************************PF**HQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRIS******************************************************************DAVPPDLNVRFR***************D*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSVVDLAVLTVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKKPNTSSLLVVNRFSEPAKEKAEIIEGLKSQLNLVNSSMGAINTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDCSRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLGLTPQQKPDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	602	2.2.26 [Sep-21-2011]
Q9ULD4	1205	Bromodomain and PHD finge	yes	no	0.129	0.064	0.448	6e-13
Q3UQU0	596	Bromodomain-containing pr	no	no	0.098	0.098	0.457	5e-12
Q9H8M2	597	Bromodomain-containing pr	no	no	0.098	0.098	0.457	5e-12
Q7ZUF2	631	Bromodomain-containing pr	yes	no	0.166	0.158	0.339	1e-11
O95696	1058	Bromodomain-containing pr	no	no	0.129	0.073	0.397	2e-11
Q5R8B0	651	Bromodomain-containing pr	no	no	0.124	0.115	0.362	4e-11
O88665	651	Bromodomain-containing pr	no	no	0.124	0.115	0.362	4e-11
Q9NPI1	651	Bromodomain-containing pr	no	no	0.124	0.115	0.362	5e-11
Q5ZKG2	651	Bromodomain-containing pr	no	no	0.119	0.110	0.363	6e-11
Q54BA2	806	Ankyrin repeat, bromo and	no	no	0.107	0.080	0.432	7e-10

>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 50/78 (64%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           E+PDY E I  PMDF T+R KL +  Y TLE+FE+D  LI +N M+YNA DTI+ R A  
Sbjct: 622 EVPDYLEFISKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVR 681

Query: 120 IHELAKKNFENLRQDSDD 137
           + +L      + R+ +++
Sbjct: 682 LRDLGGAILRHARRQAEN 699

Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity.
Homo sapiens (taxid: 9606)

>sp|Q3UQU0|BRD9_MOUSE Bromodomain-containing protein 9 OS=Mus musculus GN=Brd9 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I
Sbjct: 171 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 229

Mus musculus (taxid: 10090)

>sp|Q9H8M2|BRD9_HUMAN Bromodomain-containing protein 9 OS=Homo sapiens GN=BRD9 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 42/59 (71%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I
Sbjct: 171 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 229

Homo sapiens (taxid: 9606)

>sp|Q7ZUF2|BRD9_DANRE Bromodomain-containing protein 9 OS=Danio rerio GN=brd9 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 12/112 (10%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P Y  +I+HPMDF T+++K+A   Y T+ +F+ D  L+C NAM YN P+T+Y++ A+   
Sbjct: 201 PGYSMIIKHPMDFSTMKDKIAANEYKTITEFKADFKLMCDNAMVYNRPETVYYKAAK--- 257

Query: 122 ELAKKNFENLRQDS-----DDNEPETKVVR----RGRPPTKNFKKPLGRPSL 164
           +L    F+ + + +     DD  PE  V          P K+ K+P+  P +
Sbjct: 258 KLLHTGFKMMSKQAAILGDDDIAPEEPVTEMMPIHTEYPKKSKKQPVKEPII 309

Danio rerio (taxid: 7955)

>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQAR 118
           +E+PDY + I+HPMDF T+R +L    Y  L +FE+D  LI  N M+YNA DT+++R A 
Sbjct: 594 KEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAV 653

Query: 119 SIHELAKKNFENLRQDSD 136
            + +         R++ D
Sbjct: 654 RLRDQGGVVLRQARREVD 671

Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity.

Homo sapiens (taxid: 9606)

>sp|Q5R8B0|BRD7_PONAB Bromodomain-containing protein 7 OS=Pongo abelii GN=BRD7 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 5/80 (6%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P Y  +I+HPMDF T++ K+ N  Y ++E+ + +  L+C+NAM YN P+TIY++ A+ + 
Sbjct: 166 PGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 225

Query: 122 E-----LAKKNFENLRQDSD 136
                 L+++  ++L+Q  D
Sbjct: 226 HSGMKILSQERIQSLKQSID 245

Acts both as coactivator and as corepressor. May play a role in chromatin remodeling. Activator of the Wnt signaling pathway in a DVL1-dependent manner by negatively regulating the GSK3B phosphotransferase activity. Induces dephosphorylation of GSK3B at 'Tyr-216'. Down-regulates TRIM24-mediated activation of transcriptional activation by AR. Transcriptional corepressor that down-regulates the expression of target genes. Binds to target promoters, leading to increased histone H3 acetylation at 'Lys-9' (H3K9ac). Binds to the ESR1 promoter. Recruits BRCA1 and POU2F1 to the ESR1 promoter. Coactivator for TP53-mediated activation of transcription of a set of target genes. Required for TP53-mediated cell-cycle arrest in response to oncogene activation. Promotes acetylation of TP53 at 'Lys-382', and thereby promotes efficient recruitment of TP53 to target promoters. Inhibits cell cycle progression from G1 to S phase.

Pongo abelii (taxid: 9601)

>sp|O88665|BRD7_MOUSE Bromodomain-containing protein 7 OS=Mus musculus GN=Brd7 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 5/80 (6%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P Y  +I+HPMDF T++ K+ N  Y ++E+ + +  L+C+NAM YN P+TIY++ A+ + 
Sbjct: 166 PGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 225

Query: 122 E-----LAKKNFENLRQDSD 136
                 L+++  ++L+Q  D
Sbjct: 226 HSGMKILSQERIQSLKQSID 245

Acts both as coactivator and as corepressor. May play a role in chromatin remodeling. Transcriptional corepressor that down-regulates the expression of target genes. Binds to target promoters, leading to increased histone H3 acetylation at 'Lys-9' (H3K9ac). Binds to the ESR1 promoter. Recruits BRCA1 and POU2F1 to the ESR1 promoter. Coactivator for TP53-mediated activation of transcription of a set of target genes. Required for TP53-mediated cell-cycle arrest in response to oncogene activation. Promotes acetylation of TP53 at 'Lys-382', and thereby promotes efficient recruitment of TP53 to target promoters. Inhibits cell cycle progression from G1 to S phase (By similarity). Activator of the Wnt signaling pathway in a DVL1-dependent manner by negatively regulating the GSK3B phosphotransferase activity. Induces dephosphorylation of GSK3B at 'Tyr-216'. Down-regulates TRIM24-mediated activation of transcriptional activation by AR.

Mus musculus (taxid: 10090)

>sp|Q9NPI1|BRD7_HUMAN Bromodomain-containing protein 7 OS=Homo sapiens GN=BRD7 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 5/80 (6%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P Y  +I+HPMDF T++ K+ N  Y ++E+ + +  L+C+NAM YN P+TIY++ A+ + 
Sbjct: 166 PGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 225

Query: 122 E-----LAKKNFENLRQDSD 136
                 L+++  ++L+Q  D
Sbjct: 226 HSGMKILSQERIQSLKQSID 245

Acts both as coactivator and as corepressor. May play a role in chromatin remodeling. Activator of the Wnt signaling pathway in a DVL1-dependent manner by negatively regulating the GSK3B phosphotransferase activity. Induces dephosphorylation of GSK3B at 'Tyr-216'. Down-regulates TRIM24-mediated activation of transcriptional activation by AR (By similarity). Transcriptional corepressor that down-regulates the expression of target genes. Binds to target promoters, leading to increased histone H3 acetylation at 'Lys-9' (H3K9ac). Binds to the ESR1 promoter. Recruits BRCA1 and POU2F1 to the ESR1 promoter. Coactivator for TP53-mediated activation of transcription of a set of target genes. Required for TP53-mediated cell-cycle arrest in response to oncogene activation. Promotes acetylation of TP53 at 'Lys-382', and thereby promotes efficient recruitment of TP53 to target promoters. Inhibits cell cycle progression from G1 to S phase.

Homo sapiens (taxid: 9606)

>sp|Q5ZKG2|BRD7_CHICK Bromodomain-containing protein 7 OS=Gallus gallus GN=BRD7 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P Y  +I++PMDF T++ K+ N  Y ++E+ + +  L+C+NAM YN PDTIY++ A+ + 
Sbjct: 166 PGYSMIIKNPMDFSTMKEKIKNNGYQSIEELKDNFKLMCTNAMTYNKPDTIYYKAAKKLL 225

Query: 122 E-----LAKKNFENLRQ 133
                 L+++  ++L+Q
Sbjct: 226 HSGMKILSQERIQSLKQ 242

Acts both as coactivator and as corepressor. May play a role in chromatin remodeling. Participates in the Wnt signaling pathway. Transcriptional corepressor that down-regulates the expression of target genes. Binds to target promoters, leading to increased histone H3 acetylation. Coactivator for TP53-mediated activation of transcription of a set of target genes. Required for TP53-mediated cell-cycle arrest in response to oncogene activation. Inhibits cell cycle progression from G1 to S phase.

Gallus gallus (taxid: 9031)

>sp|Q54BA2|Y3800_DICDI Ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 OS=Dictyostelium discoideum GN=DDB_G0293800 PE=4 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 56  MDP--EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113
           +DP  E +PDY +VI+HPMD GT++ KL N  Y+T++ F  DV L+  NA+ YNA  +  
Sbjct: 545 VDPLAEGIPDYFDVIKHPMDLGTIKGKLDNNGYSTIKDFAADVRLMFENALTYNADSSPV 604

Query: 114 FRQARSI 120
           ++ A+++
Sbjct: 605 WKHAKTL 611

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
225428300	750	PREDICTED: uncharacterized protein LOC10	0.901	0.724	0.571	1e-165
255559820	767	bromodomain-containing protein [Ricinus	0.906	0.711	0.569	1e-159
224102791	758	bromodomain protein [Populus trichocarpa	0.877	0.696	0.540	1e-154
449454289	776	PREDICTED: uncharacterized protein LOC10	0.900	0.698	0.501	1e-129
449528661	622	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.900	0.871	0.5	1e-128
359491912	691	PREDICTED: uncharacterized protein LOC10	0.805	0.701	0.45	1e-108
147814821	688	hypothetical protein VITISV_012026 [Viti	0.805	0.704	0.446	1e-108
224132440	546	bromodomain protein [Populus trichocarpa	0.443	0.489	0.649	1e-99
297745559	634	unnamed protein product [Vitis vinifera]	0.712	0.676	0.426	9e-97
297744477	4608	unnamed protein product [Vitis vinifera]	0.563	0.073	0.564	2e-93

>gi|225428300|ref|XP_002279830.1| PREDICTED: uncharacterized protein LOC100245230 [Vitis vinifera]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 334/584 (57%), Positives = 399/584 (68%), Gaps = 41/584 (7%)

Query: 39  RLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 98
           RL +  SY   S     +DP+ELPDY EVIEHPMDFGTVR  LA GAYA+LEQFEKDVFL
Sbjct: 188 RLQKKDSYGVFSE---PVDPKELPDYHEVIEHPMDFGTVRKNLAGGAYASLEQFEKDVFL 244

Query: 99  ICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKP 158
           ICSNAMQYNAPDTIYF+QARSI ELAKKNFENLRQDSDDNEPE K  RRGRPPTKN KKP
Sbjct: 245 ICSNAMQYNAPDTIYFKQARSIQELAKKNFENLRQDSDDNEPEPK--RRGRPPTKNIKKP 302

Query: 159 LGRPSLERARSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDS-SRRFSGS-WND 216
           LGRPSLER  S+FSSD TLA+G ENT  +N DL  G    +KSG  DS  R   G+ ++D
Sbjct: 303 LGRPSLERPGSEFSSDATLATGGENTMWSNHDLRKGALISDKSGPADSFGRSLHGTRYSD 362

Query: 217 LYTGCLAENKLERNDEV--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSL--RESSVLT 272
             TG  A+ KLER+DE   S+ KG S+KH KK  VLDENRRNTYKQ       RE SVLT
Sbjct: 363 GNTGWSADQKLERHDEFTGSILKGISLKHAKKPFVLDENRRNTYKQSSSIAVGREPSVLT 422

Query: 273 TFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVE 332
           TFD +KKQLM VGL++E+GY RSLARFA+NLGPVAWKIAA++IE+ LP GV+FGPGWV E
Sbjct: 423 TFDGEKKQLMPVGLNAEYGYARSLARFASNLGPVAWKIAAKKIEKSLPPGVKFGPGWVGE 482

Query: 333 NDLAPQRPLLLSSATVGLPSSSQPS-LIPENLSSASTHSTIELKGDKLTERPEAEDSSEK 391
           ND+ P +PL + S+T   P SS P   IP ++ S     + +  G  L ER         
Sbjct: 483 NDVIPPKPLFVPSST---PLSSLPGDSIPCSMDSQEDKPSQKTGGIGLPERNVL------ 533

Query: 392 PGPSTQSSLDGHFKKPNTSS------LLVVNRFSEPAKEKAEIIEGLKSQ--LNLVNSSM 443
              S +++L  H  K   +S      +   N+ S P+    E   GL +Q   +++NSS 
Sbjct: 534 ---SARAALANHPGKSLLTSAAASPLINTANKASGPSSGSTEASIGLNAQSGFSILNSSA 590

Query: 444 GAINTRPPFQIHQN-SVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRI 502
           GA+  RPPFQIHQ  + + PGMNGFNG YGFN+P+QMGK +GAA P GF+ Q+PQM+D I
Sbjct: 591 GAVRPRPPFQIHQGPTALHPGMNGFNGAYGFNIPTQMGKPMGAARPTGFNLQAPQMLDAI 650

Query: 503 SRTDTNFVQPVTASSLNSDDPKLDCSRSLQNLESLGSAPSLP---GNHQPTWQVSPHPKP 559
           SRT  NF  P   ++L  +DPK     +  N     S+P LP   G      +V PHP+P
Sbjct: 651 SRTTPNFGHPGMGNNLTPEDPKFLEKSTTTN----SSSPLLPHPGGEAAAAPRVGPHPQP 706

Query: 560 DL-GLTPQQKPDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL 602
              GL PQQ+ D+VPPDLNVRF+SPGSP+SS+VDSTQPDLALQL
Sbjct: 707 SWPGLPPQQRQDSVPPDLNVRFQSPGSPSSSKVDSTQPDLALQL 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559820|ref|XP_002520929.1| bromodomain-containing protein [Ricinus communis] gi|223539895|gb|EEF41474.1| bromodomain-containing protein [Ricinus communis]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 335/588 (56%), Positives = 407/588 (69%), Gaps = 42/588 (7%)

Query: 38  QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVF 97
           +RL +  +Y   S     +DP+ELPDY EVIEHPMDFGTVR KLA G YA LEQFEKDVF
Sbjct: 199 ERLQKKDTYGVFSE---PVDPDELPDYHEVIEHPMDFGTVRKKLAGGVYANLEQFEKDVF 255

Query: 98  LICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETK--VVRRGRPPTKNF 155
           LICSNAMQYNAPDTIYFRQARSI ELAKKNFENLRQDSDDNEPE +  VVRRGRPPTKN 
Sbjct: 256 LICSNAMQYNAPDTIYFRQARSIQELAKKNFENLRQDSDDNEPEPEPTVVRRGRPPTKNL 315

Query: 156 KKPLGRPSLERARSDFSSD-VTLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSW 214
           KKP+GRPSL+RA S++S D  TLA+G E+T  +N D   G    +KSGFTDS  R  G  
Sbjct: 316 KKPVGRPSLDRAGSEYSLDAATLATGGESTIWSNNDHRKGPLVSDKSGFTDSLGRSHGPR 375

Query: 215 NDLYTGCLAENKLERNDEV--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLT 272
           +D     L +NK ERN+E   S+ KG S+K+GK+Q  LDENRRNTYKQ     RE SVL 
Sbjct: 376 SD--ANWLTDNKFERNEEATGSVLKGNSIKYGKRQFGLDENRRNTYKQLSAG-REPSVLI 432

Query: 273 TFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVE 332
           TFD+++KQLM VGL SEHGY RSLARFAAN+G VAWKIA+ RIER LP G++FGPGWV E
Sbjct: 433 TFDSERKQLMAVGLLSEHGYARSLARFAANVGAVAWKIASTRIERSLPPGIKFGPGWVSE 492

Query: 333 NDLAPQRPLLLSSATVGLPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKP 392
           ND++PQR  +LSS   GLP   QP  +P N  +A+T S  E + + L+++PE     ++ 
Sbjct: 493 NDISPQRAFVLSSPPPGLPLLLQPLSLPVN--TAATTSIAESR-ENLSQKPENNMIEDE- 548

Query: 393 GPSTQSSLDGHFKKPNTSSLLVVNRFSEPAK-----EKAEIIEGLKSQ--LNLVNSSMGA 445
               Q + +GH     + S           K     E+ E +E L S     L+N S   
Sbjct: 549 ---KQLASEGHISNALSPSASSSTSPVAAGKPESCAERGEAVERLNSHGGATLLNCSASM 605

Query: 446 INTRPPFQIHQNSVIRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRT 505
           I   PP QI  NSV R GMN FNGTYGF++P++MGKL+G + PAGF+FQSPQM+D+I ++
Sbjct: 606 IRPNPPLQI--NSVHR-GMNRFNGTYGFDLPAEMGKLVGTSMPAGFNFQSPQMIDKILKS 662

Query: 506 DTNFVQPVTASSLNSDDPKLDCSRSLQNLESLGSAPSLPGNH----------QPTWQVSP 555
           +TNFV P TA+SLNS+ PKL  S    ++   G+ P+ PGN           +P+WQ S 
Sbjct: 663 NTNFVHPATANSLNSEGPKL--SEHSSSINPTGALPN-PGNDMEVPRYELEPRPSWQGSL 719

Query: 556 H-PKPDLGLTPQQKPDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL 602
           H PK D GL+PQQK D+VPPDLNVRF+SPGSP+S+RVDS QPDLALQL
Sbjct: 720 HLPKSDAGLSPQQKSDSVPPDLNVRFQSPGSPSSNRVDSAQPDLALQL 767

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102791|ref|XP_002312802.1| bromodomain protein [Populus trichocarpa] gi|222849210|gb|EEE86757.1| bromodomain protein [Populus trichocarpa]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 309/572 (54%), Positives = 384/572 (67%), Gaps = 44/572 (7%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D +ELPDY EVIEHPMDFGTVR KL NGAY +LE FE++VFLIC+NAMQYNAPDTIYFR
Sbjct: 206 VDLDELPDYLEVIEHPMDFGTVRKKLTNGAYGSLELFEEEVFLICTNAMQYNAPDTIYFR 265

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QARSI ELAKKNFENLRQDSDDNE E KVVRRGRPP++NFKK  GRPSL+ A S+F +  
Sbjct: 266 QARSIQELAKKNFENLRQDSDDNEAEPKVVRRGRPPSENFKKSPGRPSLDLAGSEFPTGR 325

Query: 176 TLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEV-- 233
           TLA+G EN +             EKSGF DSS +F GS N+ Y     +N+ ERNDE   
Sbjct: 326 TLATGGENRS------------SEKSGFADSSGQFHGSRNEAYLST--DNRFERNDETAG 371

Query: 234 SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSL--RESSVLTTFDADKKQLMTVGLHSEHG 291
           S+ KG   KH KK + LDENRRNTYKQFH S   R  SVLTTFDA++KQL+ VGL +EHG
Sbjct: 372 SILKG---KHIKKHLALDENRRNTYKQFHPSAGGRVPSVLTTFDAERKQLVAVGLLTEHG 428

Query: 292 YTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLP 351
           Y RS+ARFAAN+GP +W IA +RIE+ L  GV+FGPGWV END+ PQ+ L  S     L 
Sbjct: 429 YARSIARFAANIGPFSWTIAVKRIEKSLAPGVKFGPGWVGENDIPPQKALFSSPMPSQLA 488

Query: 352 SSSQPSL-----IPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKK 406
                       + E+ ++ +T   ++ K  KL+ +PE +   EK  PST+ S + HF  
Sbjct: 489 PPPSLPPQKPFSVLESSAATATACGVKSKQGKLSAKPEKDIFPEKQVPSTRLS-EAHFSS 547

Query: 407 --PNTS---SLLVVNRFSEPAKEKAEIIEGLKSQ--LNLVNSSMGAINTRPPFQIHQNSV 459
             P+TS   S+  VN+ SEP  E+AE +  L S    N++NSS G +    P Q+HQN  
Sbjct: 548 VPPSTSMTTSVSAVNK-SEPFTERAESVPKLNSHSAFNVLNSSTGVMRQTAPSQLHQNPA 606

Query: 460 IRPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLN 519
           I PG  GFN TYGFN+ +QMGKLIG A PAG   QS QM D++SRT++N V+   A+S+N
Sbjct: 607 IHPGTIGFNATYGFNLAAQMGKLIGVARPAGLGIQSSQMADKVSRTNSNLVRSANANSIN 666

Query: 520 SDDPKL-DCSRSLQNLESLGS-------APSLPGNHQPTWQ-VSPHPKPDLGLTPQQKPD 570
           S+  K  + S S++   +L +       AP      QPTWQ + P+P+PD G +  QK D
Sbjct: 667 SEKMKFPENSSSIKISGALPNSGNEAVEAPRSVDQEQPTWQGLYPNPRPDSGSSSHQKSD 726

Query: 571 AVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL 602
           AVPPDLNVR++SPGSP+S  +D  QPDLALQL
Sbjct: 727 AVPPDLNVRYQSPGSPSSGCIDPAQPDLALQL 758

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454289|ref|XP_004144888.1| PREDICTED: uncharacterized protein LOC101218234 [Cucumis sativus] gi|449473925|ref|XP_004154023.1| PREDICTED: uncharacterized protein LOC101210731 [Cucumis sativus]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/574 (50%), Positives = 367/574 (63%), Gaps = 32/574 (5%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP ELPDY E+I+HPMDFGTVR KL +GAY+TLEQFEKDV LI SNAMQYN+PDTIYFR
Sbjct: 208 VDPNELPDYHEIIDHPMDFGTVREKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFR 267

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QAR+I ELAKKNF+NLRQDSDDNEPE KVVRRGRPPTKN KKPLGRPSLERA S+FS D 
Sbjct: 268 QARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDA 327

Query: 176 TLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWN--DLYTGCLAENKLERNDEV 233
           TLA+G EN A  + DL  G  HLEK  F D S RFS S N  D        ++ +R++++
Sbjct: 328 TLATGGEN-ANRSSDLRKGLHHLEKPSFADFSGRFSFSSNNSDAAFNLFNPSRFDRSEDI 386

Query: 234 SLS--KGYSMKHGKKQVVLDENRRNTYKQFHQ--SLRESSVLTTFDADKKQLMTVGLHSE 289
           + S  +  S++ GKK +V +ENRRNTY QF    ++ E +VL TFD ++K LM VGL  E
Sbjct: 387 TGSALRFNSVRQGKKPIVSEENRRNTYSQFQAATAMLEPAVLNTFDRERKVLMPVGLFLE 446

Query: 290 HGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVG 349
           H Y RSLARFAA+LG VAW +A+++IER LP+G  FGPGWV+END+ P+R + L  A   
Sbjct: 447 HAYARSLARFAADLGSVAWTVASKKIERSLPSGSGFGPGWVIENDITPKR-VFLPQAEPS 505

Query: 350 LPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQS-SLDGHFKKPN 408
             S+ QP L  E+        T E K  + ++  EA+ S +     +++ S  G   +P 
Sbjct: 506 KMSTLQPFLGHESSDPDVKPLTNEQKRVRSSDNSEADTSHKTHDELSRAPSSGGQVNRPP 565

Query: 409 TSSLLV------VNRFSEPAKEKAEIIEGLK--SQLNLVNSSMGAINTRPPFQIHQNSVI 460
           T  + V        + SE  K +AE +EG K     N++ SS+    +RP F  H +  I
Sbjct: 566 TEFVAVSSSPSSTQQSSEQCKGQAETVEGSKPSGNYNVLESSIPI--SRPSFHKHHSPSI 623

Query: 461 RPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNS 520
            PGMNGFNG YGF++ +  GKLIG +  AG   QS QM++ ISRT+ NF+ P  A++LN 
Sbjct: 624 HPGMNGFNGAYGFDLSAHRGKLIGPSDSAGVKPQSSQMLETISRTNANFILPAMATNLNP 683

Query: 521 DDPKL----------DCSRSLQNLESLGSAPSLPGNHQPTWQVSPHP--KPDLGLTPQQK 568
            +PK             S      + L +  + P    P W     P  K D  +T   K
Sbjct: 684 KEPKCPENNPSTTNSSSSLVGSGSDGLINPVASPHLRSP-WHQGKQPAEKTDAVVTTIYK 742

Query: 569 PDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL 602
           P++VPPDLNVRF+SPGSP+SS+VDS  PDL LQL
Sbjct: 743 PESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 776

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528661|ref|XP_004171322.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101210731, partial [Cucumis sativus]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 287/574 (50%), Positives = 366/574 (63%), Gaps = 32/574 (5%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP ELPDY E+I+HPMDFGTVR KL +GAY+TLEQFEKDV LI SNAMQYN+PDTIYFR
Sbjct: 54  VDPNELPDYHEIIDHPMDFGTVREKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFR 113

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QAR+I EL KKNF+NLRQDSDDNEPE KVVRRGRPPTKN KKPLGRPSLERA S+FS D 
Sbjct: 114 QARTIQELXKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDA 173

Query: 176 TLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWN--DLYTGCLAENKLERNDEV 233
           TLA+G EN A  + DL  G  HLEK  F D S RFS S N  D        ++ +R++++
Sbjct: 174 TLATGGEN-ANRSSDLRKGLHHLEKPSFADFSGRFSFSSNNSDAAFNLFNPSRFDRSEDI 232

Query: 234 SLS--KGYSMKHGKKQVVLDENRRNTYKQFHQ--SLRESSVLTTFDADKKQLMTVGLHSE 289
           + S  +  S++ GKK +V +ENRRNTY QF    ++ E +VL TFD ++K LM VGL  E
Sbjct: 233 TGSALRFNSVRQGKKPIVSEENRRNTYSQFQAATAMLEPAVLNTFDRERKVLMPVGLFLE 292

Query: 290 HGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVG 349
           H Y RSLARFAA+LG VAW +A+++IER LP+G  FGPGWV+END+ P+R + L  A   
Sbjct: 293 HAYARSLARFAADLGSVAWTVASKKIERSLPSGSGFGPGWVIENDITPKR-VFLPQAEPS 351

Query: 350 LPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQS-SLDGHFKKPN 408
             S+ QP L  E+        T E K  + ++  EA+ S +     +++ S  G   +P 
Sbjct: 352 KMSTLQPFLGHESSDPDVKPLTNEQKRVRSSDNSEADTSHKTHDELSRAPSSGGQVNRPP 411

Query: 409 TSSLLV------VNRFSEPAKEKAEIIEGLK--SQLNLVNSSMGAINTRPPFQIHQNSVI 460
           T  + V        + SE  K +AE +EG K     N++ SS+    +RP F  H +  I
Sbjct: 412 TEFVAVSSSPSSTQQSSEQCKGQAETVEGSKPSGNYNVLESSIPI--SRPSFHKHHSPSI 469

Query: 461 RPGMNGFNGTYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNS 520
            PGMNGFNG YGF++ +  GKLIG +  AG   QS QM++ ISRT+ NF+ P  A++LN 
Sbjct: 470 HPGMNGFNGAYGFDLSAHRGKLIGPSDSAGVKPQSSQMLETISRTNANFILPAMATNLNP 529

Query: 521 DDPKL----------DCSRSLQNLESLGSAPSLPGNHQPTWQVSPHP--KPDLGLTPQQK 568
            +PK             S      + L +  + P    P W     P  K D  +T   K
Sbjct: 530 KEPKCPENNPSTTNSSSSLVGSGSDGLINPVASPHLRSP-WHQGKQPAEKTDAVVTTIYK 588

Query: 569 PDAVPPDLNVRFRSPGSPNSSRVDSTQPDLALQL 602
           P++VPPDLNVRF+SPGSP+SS+VDS  PDL LQL
Sbjct: 589 PESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 622

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491912|ref|XP_002272566.2| PREDICTED: uncharacterized protein LOC100244510 [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/560 (45%), Positives = 322/560 (57%), Gaps = 75/560 (13%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DPEELPDY ++IEHPMDFGTVR KL  G Y+ LEQFE D+FLICSNAMQYNAPDT+YFR
Sbjct: 194 VDPEELPDYHDIIEHPMDFGTVRKKLDGGLYSNLEQFESDIFLICSNAMQYNAPDTVYFR 253

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QAR+I ELAK++F NLRQ+ DD EP+ K+VRRGRPPTK+ KK LG   LE    + SS+ 
Sbjct: 254 QARTIQELAKRDFANLRQEGDDGEPQPKIVRRGRPPTKHLKKSLGSSPLEHVAPETSSEA 313

Query: 176 TLASGAENTALTNR-DLGNG-TPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDE- 232
           TLA+G +N+  +N  +L  G TP   +        ++    +D Y+  L+E     N+E 
Sbjct: 314 TLATGGDNSISSNSYNLRKGPTPCKFRPADISVKAQYGSRNSDNYSSWLSE----WNNEF 369

Query: 233 -VSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHG 291
             S+ KG S KHGKK   LDENRR+TYK    S  E SVLTT   + KQLM+VGLHS+HG
Sbjct: 370 PASILKGVSTKHGKKPFELDENRRDTYKHPLASNHEPSVLTTLHGELKQLMSVGLHSDHG 429

Query: 292 YTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLP 351
           Y RSLARFAA+LG   WKIAA++I   LP GV FGPGWV EN+   QRP L         
Sbjct: 430 YARSLARFAADLGQDVWKIAAKKIANVLPVGVEFGPGWVGENEALAQRPSL--------- 480

Query: 352 SSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKKPNTSS 411
                                      L E  ++ ++S  P P    +  G       SS
Sbjct: 481 ---------------------------LCENQKSSNNSTPPHPQPPPTTSG-------SS 506

Query: 412 LLVVNRFSEPAKEKA-EIIEGLKSQLNLVNSSMGAINTRP-PFQIHQNSVIRPGMNGFNG 469
           L V NR S P KE++ E + GL SQ+ L         +RP P +IHQ   I PG+NGF+G
Sbjct: 507 LFVANRSSLPCKEESGEAVRGLNSQIELT--------SRPAPPEIHQTLGIHPGLNGFSG 558

Query: 470 TYGFNMPSQMG--KLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDC 527
            +GFN  SQMG  +L   AG +       Q +  +S + +  + P+ A+   SD P+   
Sbjct: 559 GFGFNPSSQMGMARLAMLAGNSSTESMPSQKLGMVSNSSSIPIHPMQANYFASDRPESPV 618

Query: 528 SRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLG--LTPQQKPDAVPPDLNVRFRSPGS 585
           S +     +L +  SL   H P       P+  +G   + Q  P  +PPDLNVRF++PGS
Sbjct: 619 SSNTPRSRNLAAPGSLMKVHTP-------PEVLIGGKASWQGLPQRIPPDLNVRFQAPGS 671

Query: 586 PNSSR---VDSTQPDLALQL 602
           P+SS      S QPDLALQL
Sbjct: 672 PSSSTTPIASSQQPDLALQL 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147814821|emb|CAN74748.1| hypothetical protein VITISV_012026 [Vitis vinifera]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/560 (44%), Positives = 320/560 (57%), Gaps = 75/560 (13%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DPEELPDY ++IEHPMDFGTVR KL  G Y+ LEQFE D+FLICSNAMQYNAPDT+YFR
Sbjct: 191 VDPEELPDYHDIIEHPMDFGTVRKKLDGGLYSNLEQFESDIFLICSNAMQYNAPDTVYFR 250

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QAR+I ELAK++F NLRQ+ DD EP+ K+VRRGRPPTK+ KK LG   LE    + SS+ 
Sbjct: 251 QARTIQELAKRDFANLRQEGDDGEPQPKIVRRGRPPTKHLKKSLGSSPLEHVAPETSSEA 310

Query: 176 TLASGAENTALTNR-DLGNG-TPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDE- 232
           TLA+G +N+  +N  +L  G TP   +        ++    +D Y+  L+E     N+E 
Sbjct: 311 TLATGGDNSISSNSYNLRKGPTPCKFRPADISVKAQYGSRNSDNYSSWLSE----WNNEF 366

Query: 233 -VSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHG 291
             S+ KG S KHGKK   LDENRR+TYK    S  E SVLTT   + KQLM+VGLHS+HG
Sbjct: 367 PASILKGVSTKHGKKPFELDENRRDTYKHPLASNHEPSVLTTLHGELKQLMSVGLHSDHG 426

Query: 292 YTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLP 351
           Y RSLARFAA+LG   WKIAA++I   LP GV FGPGWV EN+   QRP           
Sbjct: 427 YARSLARFAADLGQDVWKIAAKKIANVLPVGVEFGPGWVGENEALAQRP----------- 475

Query: 352 SSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKKPNTSS 411
                SL+ EN  S++                           ++           + SS
Sbjct: 476 -----SLLCENQKSSN---------------------------NSTPPHPQPPPTTSGSS 503

Query: 412 LLVVNRFSEPAKEKA-EIIEGLKSQLNLVNSSMGAINTRP-PFQIHQNSVIRPGMNGFNG 469
           L V NR S P KE++ E + GL SQ+ L         +RP P +IHQ   I PG+NGF+G
Sbjct: 504 LFVANRSSLPCKEESGEAVRGLNSQIELT--------SRPAPPEIHQTLGIHPGLNGFSG 555

Query: 470 TYGFNMPSQMG--KLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDC 527
            +GFN  SQMG  +L   AG +       Q +  +S + +  + P+ A+   SD P+   
Sbjct: 556 GFGFNPSSQMGMARLAMLAGNSSTESXPSQKLGMVSNSSSIPIHPMQANYFASDRPESPV 615

Query: 528 SRSLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLG--LTPQQKPDAVPPDLNVRFRSPGS 585
           S +     +L    SL   H P       P+  +G   + Q  P  +PPDLNVRF++PGS
Sbjct: 616 SSNTPRSRNLAEPGSLMKVHTP-------PEVLIGGKASWQGLPQRIPPDLNVRFQAPGS 668

Query: 586 PNSSR---VDSTQPDLALQL 602
           P+SS      S QPDLALQL
Sbjct: 669 PSSSTTPIASSQQPDLALQL 688

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132440|ref|XP_002328271.1| bromodomain protein [Populus trichocarpa] gi|222837786|gb|EEE76151.1| bromodomain protein [Populus trichocarpa]

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/288 (64%), Positives = 219/288 (76%), Gaps = 21/288 (7%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D  ELPDY EVIEHPMDFGTVR KL NGAYA+LEQFEKDVFLIC+NAMQYNAPDTIYFR
Sbjct: 214 VDLNELPDYLEVIEHPMDFGTVRKKLLNGAYASLEQFEKDVFLICTNAMQYNAPDTIYFR 273

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QARSI ELA+KNFENLRQD+DDNE E KVV+RGRPP++N KK  GRPSL+ A S+F S  
Sbjct: 274 QARSIQELARKNFENLRQDTDDNEAEHKVVKRGRPPSENLKKSPGRPSLDPAGSEFPSGA 333

Query: 176 TLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEV-- 233
           TLA+G EN               EK GF DSS +F GS N+ Y+  L +N+ ER+DE   
Sbjct: 334 TLATGGENRP------------SEKPGFADSSEQFHGSRNEAYS--LTDNRFERHDETAG 379

Query: 234 SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSL--RESSVLTTFDADKKQLMTVGLHSEHG 291
           S+ KG   KH KK + +DENRRNTYKQFH S   R  SVLTTFDA++KQL+ VGL +EHG
Sbjct: 380 SVLKG---KHSKKPLAIDENRRNTYKQFHPSAGGRVPSVLTTFDAERKQLVAVGLLTEHG 436

Query: 292 YTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQR 339
           Y RS+ARFAAN+GP +W IA ++IER L  G++FGPGWV END+ PQR
Sbjct: 437 YARSIARFAANIGPFSWTIAVKKIERSLAPGIKFGPGWVGENDITPQR 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745559|emb|CBI40724.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 237/556 (42%), Positives = 298/556 (53%), Gaps = 127/556 (22%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DPEELPDY ++IEHPMDFGTVR KL  G Y+ LEQFE D+FLICSNAMQYNAPDT+YFR
Sbjct: 197 VDPEELPDYHDIIEHPMDFGTVRKKLDGGLYSNLEQFESDIFLICSNAMQYNAPDTVYFR 256

Query: 116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDV 175
           QAR+I ELAK++F NLRQ+ DD EP+ K+VRRGRPPTK+ KK LG   LE    + SS+ 
Sbjct: 257 QARTIQELAKRDFANLRQEGDDGEPQPKIVRRGRPPTKHLKKSLGSSPLEHVAPETSSEA 316

Query: 176 TLASGAENTALTNR-DLGNG-TPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDE- 232
           TLA+G +N+  +N  +L  G TP   +        ++    +D Y+  L+E     N+E 
Sbjct: 317 TLATGGDNSISSNSYNLRKGPTPCKFRPADISVKAQYGSRNSDNYSSWLSE----WNNEF 372

Query: 233 -VSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHG 291
             S+ KG S KHGKK   LDENRR+TYK    S  E SVLTT   + KQLM+VGLHS+HG
Sbjct: 373 PASILKGVSTKHGKKPFELDENRRDTYKHPLASNHEPSVLTTLHGELKQLMSVGLHSDHG 432

Query: 292 YTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLP 351
           Y RSLARFAA+LG   WKIAA++I   LP GV FGPGWV EN+   QRP           
Sbjct: 433 YARSLARFAADLGQDVWKIAAKKIANVLPVGVEFGPGWVGENEALAQRP----------- 481

Query: 352 SSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLDGHFKKPNTSS 411
                SL+ EN  S++                           ++           + SS
Sbjct: 482 -----SLLCENQKSSN---------------------------NSTPPHPQPPPTTSGSS 509

Query: 412 LLVVNRFSEPAKEKA-EIIEGLKSQLNLVNSSMGAINTRP-PFQIHQNSVIRPGMNGFNG 469
           L V NR S P KE++ E + GL SQ+ L         +RP P +IHQ   I PG+NGF+G
Sbjct: 510 LFVANRSSLPCKEESGEAVRGLNSQIELT--------SRPAPPEIHQTLGIHPGLNGFSG 561

Query: 470 TYGFNMPSQMGKLIGAAGPAGFSFQSPQMVDRISRTDTNFVQPVTASSLNSDDPKLDCSR 529
             GF                GF+  S   + R++                          
Sbjct: 562 --GF----------------GFNPSSQMGMARLAM------------------------- 578

Query: 530 SLQNLESLGSAPSLPGNHQPTWQVSPHPKPDLGLTPQQKPDAVPPDLNVRFRSPGSPNSS 589
                        L GN   + +  P  K  +GL     P  +PPDLNVRF++PGSP+SS
Sbjct: 579 -------------LAGNS--STESMPSQKLGMGL-----PQRIPPDLNVRFQAPGSPSSS 618

Query: 590 R---VDSTQPDLALQL 602
                 S QPDLALQL
Sbjct: 619 TTPIASSQQPDLALQL 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744477|emb|CBI37739.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/356 (56%), Positives = 243/356 (68%), Gaps = 17/356 (4%)

Query: 45   SYCCSSSIDFK----MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLIC 100
            S+ C+  +  K    +DP  LP  C ++ + + F ++  K+    Y       KDVFLIC
Sbjct: 4259 SFVCNLWVWTKSIVNVDPLTLPSVC-IVRYELRFLSIFIKMYRIVYRKFLTIMKDVFLIC 4317

Query: 101  SNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLG 160
            SNAMQYNAPDTIYF+QARSI ELAKKNFENLRQDSDDNEPE K  RRGRPPTKN KKPLG
Sbjct: 4318 SNAMQYNAPDTIYFKQARSIQELAKKNFENLRQDSDDNEPEPK--RRGRPPTKNIKKPLG 4375

Query: 161  RPSLERARSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDS-SRRFSGS-WNDLY 218
            RPSLER  S+FSSD TLA+G ENT  +N DL  G    +KSG  DS  R   G+ ++D  
Sbjct: 4376 RPSLERPGSEFSSDATLATGGENTMWSNHDLRKGALISDKSGPADSFGRSLHGTRYSDGN 4435

Query: 219  TGCLAENKLERNDEV--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSL--RESSVLTTF 274
            TG  A+ KLER+DE   S+ KG S+KH KK  VLDENRRNTYKQ       RE SVLTTF
Sbjct: 4436 TGWSADQKLERHDEFTGSILKGISLKHAKKPFVLDENRRNTYKQSSSIAVGREPSVLTTF 4495

Query: 275  DADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVEND 334
            D +KKQLM VGL++E+GY RSLARFA+NLGPVAWKIAA++IE+ LP GV+FGPGWV END
Sbjct: 4496 DGEKKQLMPVGLNAEYGYARSLARFASNLGPVAWKIAAKKIEKSLPPGVKFGPGWVGEND 4555

Query: 335  LAPQRPLLLSSATVGLPSSSQPS-LIPENLSSASTHSTIELKGDKLTERPEAEDSS 389
            + P +PL + S+T   P SS P   IP ++ S     + +  G  L ER + +  S
Sbjct: 4556 VIPPKPLFVPSST---PLSSLPGDSIPCSMDSQEDKPSQKTGGIGLPERNQWKHGS 4608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
TAIR|locus:2151948	916	AT5G55040 "AT5G55040" [Arabido	0.531	0.349	0.444	2e-75
TAIR|locus:2030422	652	AT1G20670 "AT1G20670" [Arabido	0.569	0.526	0.435	2.5e-75
TAIR|locus:2014594	580	AT1G76380 "AT1G76380" [Arabido	0.463	0.481	0.493	5.3e-73
UNIPROTKB|F1N3J5	596	BRD9 "Uncharacterized protein"	0.199	0.201	0.356	8.6e-11
MGI|MGI:2145317	596	Brd9 "bromodomain containing 9	0.161	0.162	0.396	1.4e-10
MGI|MGI:1888520	1400	Brd4 "bromodomain containing 4	0.181	0.077	0.350	1.6e-10
RGD|1307359	597	Brd9 "bromodomain containing 9	0.161	0.162	0.392	1.8e-10
UNIPROTKB|Q9H8M2	597	BRD9 "Bromodomain-containing p	0.161	0.162	0.382	2.4e-10
UNIPROTKB|E9PSF3	821	BRPF3 "Bromodomain and PHD fin	0.136	0.099	0.440	4.9e-10
UNIPROTKB|B7ZLN5	871	BRPF3 "Bromodomain and PHD fin	0.136	0.094	0.440	5.4e-10

TAIR|locus:2151948 AT5G55040 "AT5G55040" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 2.0e-75, Sum P(3) = 2.0e-75
 Identities = 152/342 (44%), Positives = 205/342 (59%)

Query:    56 MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
             +DPEELPDY ++IEHPMDF TVR KLANG+Y+TLE+ E DV LICSNAMQYN+ DT+Y++
Sbjct:   211 VDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELESDVLLICSNAMQYNSSDTVYYK 270

Query:   116 QARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPT---KNFKKPLGRPSLERARSDFS 172
             QAR+I E+ K+ FE  R      E E K   + +P +   K  ++P  R  LE   SDFS
Sbjct:   271 QARTIQEMGKRKFEKARLKIKRAEKELKTDEKVKPDSSVKKQVRQPFSRNGLEAVGSDFS 330

Query:   173 SDVTLASG-AENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERND 231
             S   LASG A      +  +G    H EK  +TD    F G+ +      L ++ LE+ +
Sbjct:   331 SGANLASGGASQNEPVSTQIGG---H-EKHSYTDVL--FEGNTS------LVDS-LEKAE 377

Query:   232 EVSLSKGYSMKHGKKQVVLDENRRNTYKQF-HQSLRESSVLTTFDADKKQLMTVGLHSEH 290
             ++S  KG   K G+K  V++E+RR TY+    Q  R  S+ TTF+++ KQ + VGLH+EH
Sbjct:   378 DLSSGKGLFGKCGRKLSVVEEDRRATYEDSDQQGDRSESIFTTFESEIKQFVAVGLHAEH 437

Query:   291 GYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGL 350
              Y RSLARFAA LGPVAWKIA++RIE+ LPA  +FG GWV E +  P   LL  + T   
Sbjct:   438 AYGRSLARFAATLGPVAWKIASQRIEQALPADFKFGRGWVGEYEPLPTPVLLFETCTPKE 497

Query:   351 PSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKP 392
             P   + S+  +  S+A+T +   L    L   P  E    +P
Sbjct:   498 PPK-KASVFSKRKSNAATKTNETLFKTPL---PAKEQQGSRP 535

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2030422 AT1G20670 "AT1G20670" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
 Identities = 161/370 (43%), Positives = 226/370 (61%)

Query:    56 MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
             +DPEELPDY E+I++PMDF T+RNKL +GAY+TLEQFE+DVFLIC+NAM+YN+ DT+Y+R
Sbjct:   200 VDPEELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFERDVFLICTNAMEYNSADTVYYR 259

Query:   116 QARSIHELAKKNFENLRQDSDDNEPET--------KVVRRGRPPTKNFKKPLGRPSLERA 167
             QAR+I ELAKK+FENLRQDSDD EP++        KV RRGRPP K+  +P    S++R 
Sbjct:   260 QARAIQELAKKDFENLRQDSDDEEPQSQQQQQQQPKVARRGRPPKKH-PEP---SSIDRT 315

Query:   168 RSDFSSDVTLASGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKL 227
              S+ S+D  +   + N      +L    P   K    +SS R + + ++  +G   +   
Sbjct:   316 ASEISADALIPGDSSNKFSGAYNLRKAPPSY-KFRQAESSVRINHN-SETQSGWSVD--W 371

Query:   228 ERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLH 287
             E     S+ K  + K+G K   +D+NRR+TY     S +E SVLTT + + KQL+ VGL+
Sbjct:   372 ESEFPSSVVKAVN-KYGMKHFNVDDNRRDTYNHLSTSTQEPSVLTTLEDELKQLIPVGLN 430

Query:   288 SEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVENDLAPQRP------L 341
              E+GY +SLAR+AANLGPVAWKIA+RRIE  LP+G++FG GWV EN   P+        +
Sbjct:   431 MEYGYAKSLARYAANLGPVAWKIASRRIETVLPSGIKFGQGWVGENPAGPEEDDSQKQNI 490

Query:   342 LLSSATVGLPSSSQPSLIPENLSSASTHSTIELKGDKLTERPEAEDSSEKPGPSTQSSLD 401
             L+SS   G    S   L  ++ S+     T  +    +  R  +  + E+  P     L+
Sbjct:   491 LMSS---GKQKCSN-DLASDDHSNRILSPTASVSSAFIGNRHASSQAIEETTPPPARVLN 546

Query:   402 GHFKKPNTSS 411
                  P++SS
Sbjct:   547 PEIDHPSSSS 556

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014594 AT1G76380 "AT1G76380" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 147/298 (49%), Positives = 199/298 (66%)

Query:    57 DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             DPEELPDY E+I++PMDF T+R KL +GAY TLEQFE+DVFLIC+NAM+YN+ DT+Y+RQ
Sbjct:   171 DPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLICTNAMEYNSADTVYYRQ 230

Query:   117 ARSIHELAKKNFENLRQDSDDNEP-----ETKVVRRGRPPTKNFKKPLGRPSLERARSDF 171
             AR++ ELAKK+F NLRQ+SD  EP     + KVV+RGRPP    KK L +  ++R  SD 
Sbjct:   231 ARAMLELAKKDFGNLRQESDGEEPVSLSQQPKVVKRGRPPGSGLKKQLEQSLIDRTTSDI 290

Query:   172 SSDVTLASGA-ENTALTNR-DLGNGTPHLEKSGF--TDSSRRFSGSWNDLYTGCLAENKL 227
             S+D    + A +++ L+   +L    P     GF   ++S R + + ++  +G L +   
Sbjct:   291 SADAAAFTYAGDSSRLSGSYNLRKNPPSY---GFRHAETSVRINHN-SENQSGLLID--W 344

Query:   228 ERNDEVSLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLH 287
             E+    S+ K  + K+G K V  DENRR+TY Q   SL++SS+ T  D + KQL  VGL 
Sbjct:   345 EKEFPPSVVKAVN-KYGMKNV--DENRRDTYNQNSASLQDSSIFTLLDDNLKQLTPVGLK 401

Query:   288 SEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWVVEN-DLAPQRPLLLS 344
             +E+GY RSLAR+AAN+GPVAW  A  RIE+ LP G  FGPGWV EN +  PQ+  L+S
Sbjct:   402 AEYGYARSLARYAANIGPVAWTFANVRIEKLLPTGTEFGPGWVGENPENPPQQQNLMS 459

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|F1N3J5 BRD9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 46/129 (35%), Positives = 69/129 (53%)

Query:    62 PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI- 120
             P Y  +I+HPMDFGT+++K+A   Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I 
Sbjct:   171 PGYSMIIKHPMDFGTMKDKIAANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKIL 230

Query:   121 H---ELAKKNFENL-RQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSDVT 176
             H   ++  K    L  +D+   EP  +VV    P      K   RPS E     F  +  
Sbjct:   231 HAGFKMMSKQAALLGNEDTAAEEPVPEVV----PVHVETAKKSKRPSREVISCVFEPEGN 286

Query:   177 LASGAENTA 185
               S  ++TA
Sbjct:   287 ACSLTDSTA 295

GO:0070577 "histone acetyl-lysine binding" evidence=IEA

MGI|MGI:2145317 Brd9 "bromodomain containing 9" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 40/101 (39%), Positives = 58/101 (57%)

Query:    62 PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI- 120
             P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I 
Sbjct:   171 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKIL 230

Query:   121 HELAKKNFENLRQDSDD---NEPETKVVRRGRPPTKNFKKP 158
             H   K   +     S+D    EP  +VV      TK  KKP
Sbjct:   231 HAGFKMMSKAALLGSEDPAAEEPVPEVVPVQVETTKKSKKP 271

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016568 "chromatin modification" evidence=IEA

GO:0070577 "histone acetyl-lysine binding" evidence=ISO

MGI|MGI:1888520 Brd4 "bromodomain containing 4" [Mus musculus (taxid:10090)]

 Score = 174 (66.3 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
 Identities = 40/114 (35%), Positives = 59/114 (51%)

Query:    61 LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
             L DYC++I+HPMD  T+++KL +  Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct:   388 LHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 447

Query:   121 HELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSSD 174
              ++ +  F  +      +EPE  VV    P      K +  PS   + SD SSD
Sbjct:   448 QDVFEMRFAKM-----PDEPEEPVVTVSSPAVPPPTKVVAPPSSSDSSSDSSSD 496

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=ISO;IDA

GO:0001833 "inner cell mass cell proliferation" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IPI

GO:0007059 "chromosome segregation" evidence=IMP

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=ISO

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0043388 "positive regulation of DNA binding" evidence=IDA

GO:0043983 "histone H4-K12 acetylation" evidence=IMP

GO:0044154 "histone H3-K14 acetylation" evidence=IMP

RGD|1307359 Brd9 "bromodomain containing 9" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 40/102 (39%), Positives = 59/102 (57%)

Query:    62 PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI- 120
             P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I 
Sbjct:   171 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKIL 230

Query:   121 H---ELAKKNFENL-RQDSDDNEPETKVVRRGRPPTKNFKKP 158
             H   ++  K    L  +D    EP  +VV      TK  KKP
Sbjct:   231 HAGFKMMSKQAALLGSEDPAVEEPVPEVVPVQVETTKKSKKP 272

GO:0070577 "histone acetyl-lysine binding" evidence=IEA;ISO

UNIPROTKB|Q9H8M2 BRD9 "Bromodomain-containing protein 9" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 39/102 (38%), Positives = 59/102 (57%)

Query:    62 PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI- 120
             P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I 
Sbjct:   171 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKIL 230

Query:   121 H---ELAKKNFENL-RQDSDDNEPETKVVRRGRPPTKNFKKP 158
             H   ++  K    L  +D+   EP  +VV       K  KKP
Sbjct:   231 HAGFKMMSKQAALLGNEDTAVEEPVPEVVPVQVETAKKSKKP 272

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0070577 "histone acetyl-lysine binding" evidence=IDA

UNIPROTKB|E9PSF3 BRPF3 "Bromodomain and PHD finger-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 37/84 (44%), Positives = 53/84 (63%)

Query:    60 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
             E+PDY E I  PMDF T+R KL +  Y TLE+FE+D  LI +N M+YNA DTI+ R A  
Sbjct:   622 EVPDYLEFISKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVR 681

Query:   120 IHELAKKNFENLRQDSDD--NEPE 141
             + +L      + R+ +++   +PE
Sbjct:   682 LRDLGGAILRHARRQAENIGYDPE 705

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B7ZLN5 BRPF3 "Bromodomain and PHD finger-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 37/84 (44%), Positives = 53/84 (63%)

Query:    60 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
             E+PDY E I  PMDF T+R KL +  Y TLE+FE+D  LI +N M+YNA DTI+ R A  
Sbjct:   622 EVPDYLEFISKPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVR 681

Query:   120 IHELAKKNFENLRQDSDD--NEPE 141
             + +L      + R+ +++   +PE
Sbjct:   682 LRDLGGAILRHARRQAENIGYDPE 705

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	602
cd04369	99	cd04369, Bromodomain, Bromodomain	5e-27
smart00297	107	smart00297, BROMO, bromo domain	4e-24
cd05509	101	cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s	2e-22
pfam00439	84	pfam00439, Bromodomain, Bromodomain	6e-22
cd05512	98	cd05512, Bromo_brd1_like, Bromodomain; brd1_like s	6e-20
cd05498	102	cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik	1e-19
cd05513	98	cd05513, Bromo_brd7_like, Bromodomain, brd7_like s	8e-18
cd05528	112	cd05528, Bromo_AAA, Bromodomain; sub-family co-occ	5e-17
cd05511	112	cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf	2e-16
cd05506	99	cd05506, Bromo_plant1, Bromodomain, uncharacterize	4e-16
cd05500	103	cd05500, Bromo_BDF1_2_I, Bromodomain	2e-14
cd05529	128	cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe	1e-13
cd05499	102	cd05499, Bromo_BDF1_2_II, Bromodomain	1e-13
cd05504	115	cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o	6e-13
cd05516	107	cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su	2e-12
cd05496	119	cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I	4e-12
cd05515	105	cd05515, Bromo_polybromo_V, Bromodomain, polybromo	9e-12
cd05507	104	cd05507, Bromo_brd8_like, Bromodomain, brd8_like s	3e-11
cd05510	112	cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s	6e-11
cd05517	103	cd05517, Bromo_polybromo_II, Bromodomain, polybrom	2e-10
cd05502	109	cd05502, Bromo_tif1_like, Bromodomain; tif1_like s	2e-10
cd05503	97	cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA	3e-10
cd05505	97	cd05505, Bromo_WSTF_like, Bromodomain; Williams sy	1e-09
cd05501	102	cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li	1e-09
cd05495	108	cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub	7e-09
COG5076	371	COG5076, COG5076, Transcription factor involved in	1e-08
cd05520	103	cd05520, Bromo_polybromo_III, Bromodomain, polybro	2e-08
cd05497	107	cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like	2e-08
cd05518	103	cd05518, Bromo_polybromo_IV, Bromodomain, polybrom	2e-07
cd05524	113	cd05524, Bromo_polybromo_I, Bromodomain, polybromo	2e-07
cd05522	104	cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i	3e-07
cd05508	99	cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf	4e-07
cd05521	106	cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in	5e-07
cd05519	103	cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam	2e-06
cd05492	109	cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like	3e-04

>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain

 Score =  104 bits (262), Expect = 5e-27
 Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 40  LYQIKSYCCSSSIDFKM--DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVF 97
           L  +K      S  F    DP+E PDY EVI++PMD  T++ KL NG Y +LE+FE DV 
Sbjct: 9   LDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVR 68

Query: 98  LICSNAMQYNAPDTIYFRQARSIHELAKK 126
           LI SNA  YN P +  ++ A+ + +L +K
Sbjct: 69  LIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97

Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99

>gnl|CDD|197636 smart00297, BROMO, bromo domain

 Score = 97.0 bits (242), Expect = 4e-24
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query: 42  QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICS 101
           ++ S+  S      +  +E PDY ++I+ PMD  T++ KL NG Y+++E+F  D  L+ S
Sbjct: 18  KLDSHPLSWPFLKPVSRKEAPDYYDIIKKPMDLKTIKKKLENGKYSSVEEFVADFNLMFS 77

Query: 102 NAMQYNAPDTIYFRQARSIHELAKKNFENL 131
           NA  YN PD+  ++ A+ + +  +K    L
Sbjct: 78  NARTYNGPDSEVYKDAKKLEKFFEKKLREL 107

Length = 107

>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily

 Score = 91.8 bits (229), Expect = 2e-22
 Identities = 34/75 (45%), Positives = 44/75 (58%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           D EE PDY +VI+ PMD  T+  KL NG Y TLE+F  D+ LI  N   YN PDT Y++ 
Sbjct: 27  DKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKC 86

Query: 117 ARSIHELAKKNFENL 131
           A  + +   K  + L
Sbjct: 87  ANKLEKFFWKKLKEL 101

Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 101

>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain

 Score = 89.8 bits (223), Expect = 6e-22
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           DPEE PDY EVI+ PMD  T+R KL +G Y +L +F KDV LI SNA+ YN  D+  ++ 
Sbjct: 22  DPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDIYKD 81

Query: 117 AR 118
           A+
Sbjct: 82  AK 83

Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 84

>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily

 Score = 84.8 bits (210), Expect = 6e-20
 Identities = 32/68 (47%), Positives = 43/68 (63%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           D  E+PDY + I+ PMDF T+R KL +  Y TLE FE D  LI +N + YNA DTI++R 
Sbjct: 27  DLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRA 86

Query: 117 ARSIHELA 124
           A  + +  
Sbjct: 87  AVRLRDQG 94

BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98

>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 57  DPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           DPE   L DY ++I+HPMD  T++ KL N  YA  ++F  DV L+ SN  +YN PD    
Sbjct: 29  DPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDH--- 85

Query: 115 RQARSIHELAKK 126
                +H +A+K
Sbjct: 86  ----PVHAMARK 93

Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102

>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup

 Score = 78.6 bits (194), Expect = 8e-18
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           P Y  +I+HPMDF T++ K+ N  Y ++E+F+ D  L+C NAM+YN PDTIY++ A+ +
Sbjct: 32  PGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKL 90

The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 98

>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains

 Score = 77.0 bits (190), Expect = 5e-17
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 14  RERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMD 73
           RE RLFL   + +            RL   K +   ++    +D EE+PDY E+I+ PMD
Sbjct: 2   RELRLFL---RDVLK----------RLASDKRF---NAFTKPVDEEEVPDYYEIIKQPMD 45

Query: 74  FGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
             T+  KL    Y T + F KD+ LI +NA++YN       +  RS
Sbjct: 46  LQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIRS 91

Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver. Length = 112

>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 26/73 (35%), Positives = 51/73 (69%)

Query: 54  FKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113
             ++ +++PDY ++I+ PMD  T+R K++   Y + E+F +D+ LI  N++ YN PD++Y
Sbjct: 23  TPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVY 82

Query: 114 FRQARSIHELAKK 126
            ++A+ + ELA++
Sbjct: 83  TKKAKEMLELAEE 95

Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112

>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
            LPDY ++I+ PMD GTV+ KL  G Y++ E+F  DV L  +NAM+YN P          
Sbjct: 31  GLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGN-------D 83

Query: 120 IHELAKK 126
           +H +AK+
Sbjct: 84  VHTMAKE 90

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99

>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 51  SIDFK--MDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 106
           +  F   +DP +L  P Y  +I+ PMD GT+  KL +  Y ++E+F  D  L+  N + +
Sbjct: 22  ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81

Query: 107 NAPDTIYFRQARSIHELAKKNFE 129
           N P+    +  + +    +  FE
Sbjct: 82  NGPEHPVSQMGKRL----QAAFE 100

BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103

>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
             PDY   +  PMD  T+R++L N  Y +LE    DV LI SNA  +N P++   ++A+ 
Sbjct: 57  WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKR 116

Query: 120 IHEL 123
           + + 
Sbjct: 117 LSDW 120

WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 128

>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 57  DPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           DP  L  P+Y  +I+ PMD GT+  KL NG Y + ++FE+DV LI  N   +N   T  +
Sbjct: 29  DPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVY 88

Query: 115 RQARSIHELAKK 126
                + E+   
Sbjct: 89  MMGHQLEEVFND 100

BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102

>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 107
           E+PDY ++I+ PMD GT++ KL  G Y   E+F  D+ L+ SN   YN
Sbjct: 41  EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88

Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 115

>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           ELP+Y E+I  P+DF  ++ ++ N  Y +LE  EKDV L+C NA  +N   ++ +  +  
Sbjct: 36  ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIV 95

Query: 120 IHELAK 125
           +  + K
Sbjct: 96  LQSVFK 101

SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107

>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily

 Score = 62.9 bits (153), Expect = 4e-12
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 48  CSSSIDFK--MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 105
           C  S  F+  +D  + PDY ++I+ PMD GTV+  L  G Y    +F KDV LI SN+  
Sbjct: 20  CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKS 79

Query: 106 YN 107
           Y 
Sbjct: 80  YT 81

WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 119

>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQAR 118
            E PDY +VI+ P+D   +R+K+    Y +L+    D  L+  NA +YN PD+  ++ A 
Sbjct: 34  SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDAL 93

Query: 119 SIHEL 123
           ++ ++
Sbjct: 94  TLQKV 98

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 105

>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P Y  V+  PMD  T++  + NG   +  +F++DV L+  NA+ YN+ D   +  A  + 
Sbjct: 34  PGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLMAVEMQ 93

Query: 122 E 122
            
Sbjct: 94  R 94

In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104

>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 40  LYQIKSYCCSSSIDF--KMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVF 97
           L ++K+Y    S  F  K+   E PDY ++I+ PMD GT+  KL N  Y +  +F  D+ 
Sbjct: 16  LNELKTYT-EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLN 74

Query: 98  LICSNAMQYNA-PDTIYFRQARSIHELAKKNFENL 131
           LI  N + YN+ P     R A  + + A+   + +
Sbjct: 75  LIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLKLI 109

SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 112

>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 54  FKMDP--EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111
           F+  P     PDY  VI+ P+D  T+  ++ +G Y ++E  EKD+ L+  NA  +N P +
Sbjct: 27  FQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGS 86

Query: 112 IYFRQARSIHELA 124
             ++ A +I ++ 
Sbjct: 87  QVYKDANAIKKIF 99

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103

>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 46  YCCSSSIDF-KMDPEELPDYCEVIEHPMDFGTVRNKLANGA---YATLEQFEKDVFLICS 101
           YC   S+ F +     +P+Y ++I+ PMD   +R KL   +   Y++ E+F  DV L+  
Sbjct: 17  YCHELSLPFHEPVSPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFK 76

Query: 102 NAMQYNAPDTIYFRQARSIHELAK 125
           N  ++N  D+     A++  EL  
Sbjct: 77  NCYKFNEEDSEV---AQAGKELEL 97

Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 109

>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111
           + + +P Y ++I+ PMDF T+R KL +G Y TLE+F +DV L+  N   +N  D+
Sbjct: 26  NTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDS 80

Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97

>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like)

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 19/53 (35%), Positives = 35/53 (66%)

Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 111
           +E  DY +VI +PMD  T++ K + G+Y+++++F  D+ L+ SNA +Y    +
Sbjct: 28  DEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGS 80

The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 97

>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 44  KSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNA 103
           K YC S S  F   P  + DYC+ I+ PM    V+ +L    Y T+E F +D+ LI  N 
Sbjct: 13  KVYCMSKSGFFISKPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNH 72

Query: 104 MQYNAPDTIYFRQARSIHELAKKNFENLRQ 133
             +   D       +    L KK  +N ++
Sbjct: 73  KLFYKDD----DFGQVGITLEKKFEKNFKE 98

The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 102

>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 57  DPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 107
           DP+ L  PDY +++++PMD  T+R KL  G Y    Q+  DV+L+  NA  YN
Sbjct: 30  DPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYN 82

Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 108

>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 110
              E PDY E+I+ PMD  T++ KL NG Y + E+F  D+ L+  N   YN PD
Sbjct: 174 SKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPD 227

Length = 371

>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           PDY + I++P+    +R KL NG Y TLE+ E D+ L+  NA +YN P++  ++ A  + 
Sbjct: 37  PDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQ 96

Query: 122 ELAKK 126
           +L + 
Sbjct: 97  KLMQA 101

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103

>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIYFRQAR 118
            LPDY ++I+ PMD GT++ +L N  Y +  +  +D   + +N   YN P D +    A+
Sbjct: 36  NLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVL-MAQ 94

Query: 119 SIHELAKK 126
           ++ +L  +
Sbjct: 95  TLEKLFLQ 102

Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 107

>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 107
           + PDY ++I  P+D  T+ + + N  YAT E+   D  L+  NA  YN
Sbjct: 35  DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 103

>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           P+Y EV+ +P+D   ++ KL    Y  ++    D  L+ +NA  Y  PD+   + A  + 
Sbjct: 39  PEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLW 98

Query: 122 ELAKKNFENLRQDSDDNE 139
           EL    F + R +     
Sbjct: 99  EL----FLSARNEVLSGG 112

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. Length = 113

>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           D    P+Y + I +P+    ++ K+    Y + +QF  D+ L+  NA  YN  D+  ++ 
Sbjct: 33  DKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKD 92

Query: 117 A----RSIHELA 124
           A    +    LA
Sbjct: 93  AVLLEKEARLLA 104

Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 104

>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D E+ PDY + +  PMD  T+   +   AY + + F  D   I  NA+ YN  D    +
Sbjct: 27  VDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQ 86

Query: 116 QARSIHELAK 125
            A++I ++ +
Sbjct: 87  AAKAIVKICE 96

RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99

>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 117
           + PDY ++I++P+   TV+ +L +  Y   ++F  D+  I  NA  YN   ++ ++ A
Sbjct: 36  DYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYA 91

Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 106

>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
           PDY  +I+ P+    ++ ++   AY +LE+F +D  L+ +NA  YN   +I +  A  + 
Sbjct: 37  PDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEME 96

Query: 122 ELAKKNF 128
           +  KK +
Sbjct: 97  KAFKKKY 103

SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 103

>gnl|CDD|99924 cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like sub-family

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 17/99 (17%)

Query: 39  RLYQIKSYCCSSS----IDFKMDPEELPDYCEV--IEHPMDFGTVRNKLANGAYATLEQF 92
            + ++KS+    +    I      +          I   +D   ++ K+ +  Y +LE+F
Sbjct: 8   IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEF 67

Query: 93  EKDVFLICSN--------AMQYNAPDTIYFRQARSIHEL 123
           + D  L+  N        + QY+A   +Y     + H+L
Sbjct: 68  KADALLLLHNTAIFHGADSEQYDAARWLY---RDTCHDL 103

ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	602
cd05505	97	Bromo_WSTF_like Bromodomain; Williams syndrome tra	99.92
cd05497	107	Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily	99.92
cd05496	119	Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub	99.91
cd05495	108	Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb	99.91
cd05503	97	Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s	99.91
cd05507	104	Bromo_brd8_like Bromodomain, brd8_like subgroup. I	99.91
cd05504	115	Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li	99.91
KOG1474	640	consensus Transcription initiation factor TFIID, s	99.9
cd05509	101	Bromo_gcn5_like Bromodomain; Gcn5_like subfamily.	99.9
cd05508	99	Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC	99.9
cd05510	112	Bromo_SPT7_like Bromodomain; SPT7_like subfamily.	99.9
cd05513	98	Bromo_brd7_like Bromodomain, brd7_like subgroup. T	99.9
cd05502	109	Bromo_tif1_like Bromodomain; tif1_like subfamily.	99.89
cd05506	99	Bromo_plant1 Bromodomain, uncharacterized subfamil	99.89
cd05499	102	Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam	99.89
cd05498	102	Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil	99.89
cd05512	98	Bromo_brd1_like Bromodomain; brd1_like subfamily.	99.89
cd05500	103	Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami	99.89
cd05511	112	Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum	99.88
cd05501	102	Bromo_SP100C_like Bromodomain, SP100C_like subfami	99.88
cd05528	112	Bromo_AAA Bromodomain; sub-family co-occurring wit	99.88
cd05516	107	Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s	99.87
cd05524	113	Bromo_polybromo_I Bromodomain, polybromo repeat I.	99.86
cd05529	128	Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like	99.86
cd05519	103	Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci	99.86
smart00297	107	BROMO bromo domain.	99.85
cd05520	103	Bromo_polybromo_III Bromodomain, polybromo repeat	99.85
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	99.85
cd05515	105	Bromo_polybromo_V Bromodomain, polybromo repeat V.	99.84
cd05518	103	Bromo_polybromo_IV Bromodomain, polybromo repeat I	99.84
cd05517	103	Bromo_polybromo_II Bromodomain, polybromo repeat I	99.83
cd05525	106	Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1	99.83
PF00439	84	Bromodomain: Bromodomain; InterPro: IPR001487 Brom	99.83
cd04369	99	Bromodomain Bromodomain. Bromodomains are found in	99.82
cd05522	104	Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l	99.81
cd05492	109	Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	99.79
cd05521	106	Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik	99.79
COG5076	371	Transcription factor involved in chromatin remodel	99.64
cd05526	110	Bromo_polybromo_VI Bromodomain, polybromo repeat V	99.62
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	99.61
KOG1472	720	consensus Histone acetyltransferase SAGA/ADA, cata	99.4
cd05494	114	Bromodomain_1 Bromodomain; uncharacterized subfami	99.13
cd05491	119	Bromo_TBP7_like Bromodomain; TBP7_like subfamily,	98.91
KOG0008	1563	consensus Transcription initiation factor TFIID, s	98.83
KOG0386	1157	consensus Chromatin remodeling complex SWI/SNF, co	98.65
KOG1827	629	consensus Chromatin remodeling complex RSC, subuni	98.62
KOG1472	720	consensus Histone acetyltransferase SAGA/ADA, cata	98.46
KOG1828	418	consensus IRF-2-binding protein CELTIX-1, contains	98.46
KOG0008	1563	consensus Transcription initiation factor TFIID, s	98.44
PF12024	245	DUF3512: Domain of unknown function (DUF3512); Int	98.41
KOG1474	640	consensus Transcription initiation factor TFIID, s	98.21
KOG1828	418	consensus IRF-2-binding protein CELTIX-1, contains	98.15
COG5076	371	Transcription factor involved in chromatin remodel	96.59
cd05493	131	Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-	95.91
KOG0644	1113	consensus Uncharacterized conserved protein, conta	91.0
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	84.27

>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like)

Probab=99.92  E-value=6e-25  Score=193.54  Aligned_cols=93  Identities=26%  Similarity=0.357  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|.++|.+|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.++
T Consensus         4 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~   83 (97)
T cd05505           4 KCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL   83 (97)
T ss_pred             HHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            57799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 007472          115 RQARSIHELAKKN  127 (602)
Q Consensus       115 k~Ak~L~e~fek~  127 (602)
                      .+|.+|++.|...
T Consensus        84 ~~a~~le~~f~~~   96 (97)
T cd05505          84 SCMRKTEQCCVNL   96 (97)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999765

The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I

Probab=99.92  E-value=8.7e-25  Score=195.54  Aligned_cols=94  Identities=23%  Similarity=0.383  Sum_probs=90.7

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           38 QRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        38 eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      .+|.+|++++.+++|.+|||+.  .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+++
T Consensus        12 ~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~   91 (107)
T cd05497          12 VVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVL   91 (107)
T ss_pred             HHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            6789999999999999999987  69999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 007472          116 QARSIHELAKKNFENL  131 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL  131 (602)
                      +|..|++.|++.++++
T Consensus        92 ~A~~l~~~f~~~l~~~  107 (107)
T cd05497          92 MAQTLEKLFLQKLAQM  107 (107)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999998764

Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily

Probab=99.91  E-value=1.9e-24  Score=197.01  Aligned_cols=100  Identities=26%  Similarity=0.394  Sum_probs=95.0

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC-CCHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIY  113 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p-dS~V  113 (602)
                      .|..+|..|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.+
T Consensus         9 ~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i   88 (119)
T cd05496           9 QCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRI   88 (119)
T ss_pred             HHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Confidence            367889999999999999999999999999999999999999999999999999999999999999999999985 8999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCC
Q 007472          114 FRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~e  134 (602)
                      |.+|..|+..|++.+.++...
T Consensus        89 ~~~a~~L~~~F~~~~~~l~~~  109 (119)
T cd05496          89 YSMTLRLSALFEEHIKKIISD  109 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888643

WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily

Probab=99.91  E-value=2.5e-24  Score=192.71  Aligned_cols=97  Identities=26%  Similarity=0.460  Sum_probs=92.2

Q ss_pred             hHHHHHHHHhC-CCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           36 DPQRLYQIKSY-CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        36 ~~eiL~kLk~~-~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      +..+|.+|+++ +.+++|.+||+++  ++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||++++.
T Consensus         8 ~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~   87 (108)
T cd05495           8 LMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSR   87 (108)
T ss_pred             HHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            45788999999 9999999999998  69999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 007472          113 YFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      +|++|.+|++.|++.++.+.
T Consensus        88 i~~~a~~l~~~F~~~~~~~~  107 (108)
T cd05495          88 VYKYCTKLAEVFEQEIDPVM  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988753

Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily

Probab=99.91  E-value=1.8e-24  Score=189.76  Aligned_cols=95  Identities=27%  Similarity=0.442  Sum_probs=91.8

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      .+|..+|.+|.+++.+++|.+||++..+|+|+++|++||||+||++||+++.|+++++|..||+|||.||+.||++++.+
T Consensus         3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i   82 (97)
T cd05503           3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEV   82 (97)
T ss_pred             HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007472          114 FRQARSIHELAKKNF  128 (602)
Q Consensus       114 yk~Ak~L~e~fek~~  128 (602)
                      +++|..|++.|++.|
T Consensus        83 ~~~a~~l~~~f~~~~   97 (97)
T cd05503          83 GRAGHNMRKFFEKRW   97 (97)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998865

Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup

Probab=99.91  E-value=2.7e-24  Score=191.17  Aligned_cols=96  Identities=23%  Similarity=0.362  Sum_probs=91.8

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..+|.+|++++.+++|.+||+++.+|||+++|++||||+||++||+++.|.+++||.+||+|||.||+.||++++.+|.
T Consensus         8 ~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~   87 (104)
T cd05507           8 ILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYL   87 (104)
T ss_pred             HHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 007472          116 QARSIHELAKKNFENL  131 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL  131 (602)
                      +|..|++.+.+.++.+
T Consensus        88 ~A~~l~~~~~~~~~~~  103 (104)
T cd05507          88 MAVEMQREVMSQIQQL  103 (104)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999998887653

In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily

Probab=99.91  E-value=3.3e-24  Score=194.04  Aligned_cols=99  Identities=29%  Similarity=0.426  Sum_probs=95.6

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      .+|..+|.+|++++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+
T Consensus        15 ~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i   94 (115)
T cd05504          15 SALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSV   94 (115)
T ss_pred             HHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 007472          114 FRQARSIHELAKKNFENLR  132 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~  132 (602)
                      |++|..|++.|++.++++.
T Consensus        95 ~~~A~~l~~~f~~~~~~~~  113 (115)
T cd05504          95 YKAGTRLQRFFIKRCRKLG  113 (115)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999999999999998874

Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]

Probab=99.90  E-value=4.9e-24  Score=239.97  Aligned_cols=107  Identities=27%  Similarity=0.484  Sum_probs=100.1

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           34 NWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        34 ~~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      ..|..||.+|+.|..+|+|.+|||+.  .+||||+||++||||+||++||+++.|.++.+|..||+|||.|||+||++++
T Consensus       225 k~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~  304 (640)
T KOG1474|consen  225 KQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGS  304 (640)
T ss_pred             HHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            35789999999999999999999998  6999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCCCCCCc
Q 007472          112 IYFRQARSIHELAKKNFENLRQDSDDNEP  140 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~~ekL~~e~e~~E~  140 (602)
                      +||.+|+.|+++|+.+|+.+....+....
T Consensus       305 dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~  333 (640)
T KOG1474|consen  305 DVYAMAKKLQEVFEERWASMPLEIEESES  333 (640)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccc
Confidence            99999999999999999998776554433

>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily

Probab=99.90  E-value=9.9e-24  Score=185.47  Aligned_cols=97  Identities=37%  Similarity=0.545  Sum_probs=93.5

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|..+++++.+++|.+||++..+|+|+++|++||||+||++||+++.|.++++|..||+|||+||+.||++++.++
T Consensus         5 ~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~   84 (101)
T cd05509           5 QLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY   84 (101)
T ss_pred             HHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 007472          115 RQARSIHELAKKNFENL  131 (602)
Q Consensus       115 k~Ak~L~e~fek~~ekL  131 (602)
                      ++|..|++.|++.++++
T Consensus        85 ~~a~~l~~~f~~~~~~~  101 (101)
T cd05509          85 KCANKLEKFFWKKLKEL  101 (101)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999998864

Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily

Probab=99.90  E-value=7.8e-24  Score=187.30  Aligned_cols=89  Identities=26%  Similarity=0.402  Sum_probs=85.0

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472           38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA  117 (602)
Q Consensus        38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A  117 (602)
                      .++.+++ ++.+++|.+||++..+|||+++|++||||+||++||+++.|+++++|.+||+|||.||+.||++++.++.+|
T Consensus        10 ~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A   88 (99)
T cd05508          10 FALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAA   88 (99)
T ss_pred             HHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence            5677888 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 007472          118 RSIHELAKKN  127 (602)
Q Consensus       118 k~L~e~fek~  127 (602)
                      +.|.+.|+..
T Consensus        89 ~~l~~~~~~e   98 (99)
T cd05508          89 KAIVKICEQE   98 (99)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily

Probab=99.90  E-value=1.1e-23  Score=190.12  Aligned_cols=98  Identities=30%  Similarity=0.432  Sum_probs=93.1

Q ss_pred             ChHHHHHHHHhC-CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC-H
Q 007472           35 WDPQRLYQIKSY-CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT-I  112 (602)
Q Consensus        35 ~~~eiL~kLk~~-~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS-~  112 (602)
                      .|.++|.+|+++ +.+++|.+||+++.+||||++|++||||+||++||+++.|+++++|.+||+|||.||+.||++++ .
T Consensus        11 ~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~   90 (112)
T cd05510          11 SLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHP   90 (112)
T ss_pred             HHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            467899999999 89999999999999999999999999999999999999999999999999999999999999865 7


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 007472          113 YFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      ++++|..|++.|++.++.++
T Consensus        91 ~~~~A~~l~~~~~~~~~~~~  110 (112)
T cd05510          91 LRRHANFMKKKAEHLLKLIP  110 (112)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
Confidence            88999999999999998875

SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup

Probab=99.90  E-value=1.1e-23  Score=186.13  Aligned_cols=92  Identities=35%  Similarity=0.621  Sum_probs=87.6

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      +.++|.+|+.++.+++|..||+.+.+|||+++|++||||+||++||+++.|.++++|++||+|||.||+.||++++.+|+
T Consensus         6 l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~   85 (98)
T cd05513           6 LEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYK   85 (98)
T ss_pred             HHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 007472          116 QARSIHELAKKN  127 (602)
Q Consensus       116 ~Ak~L~e~fek~  127 (602)
                      +|.+|.+...++
T Consensus        86 ~A~~L~~~~~~~   97 (98)
T cd05513          86 AAKKLLHSGMKI   97 (98)
T ss_pred             HHHHHHHhhhhh
Confidence            999998876554

The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily

Probab=99.89  E-value=2.6e-23  Score=185.87  Aligned_cols=97  Identities=22%  Similarity=0.391  Sum_probs=93.0

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~---g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      +|.+||.+|++++.+++|.+||++ .+|+|+++|++||||+||++||++   +.|.++++|.+||+|||+||+.||++++
T Consensus         8 ~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s   86 (109)
T cd05502           8 KCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDS   86 (109)
T ss_pred             HHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence            477899999999999999999999 899999999999999999999998   5999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 007472          112 IYFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      .++++|+.|++.|++.++++.
T Consensus        87 ~i~~~a~~l~~~f~~~~~~~~  107 (109)
T cd05502          87 EVAQAGKELELFFEEQLKEIL  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999998864

Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants

Probab=99.89  E-value=2.3e-23  Score=182.39  Aligned_cols=94  Identities=31%  Similarity=0.495  Sum_probs=90.7

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      .|.++|.+|++++.+++|.+||++.  .+|+|+++|++||||+||++||+++.|.++++|.+|++|||.||+.||++++.
T Consensus         4 ~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~   83 (99)
T cd05506           4 QCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGND   83 (99)
T ss_pred             HHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            4789999999999999999999987  69999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 007472          113 YFRQARSIHELAKKNF  128 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~  128 (602)
                      ++++|.+|++.|++.|
T Consensus        84 i~~~a~~l~~~fe~~w   99 (99)
T cd05506          84 VHTMAKELLKIFETRW   99 (99)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999875

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05499 Bromo_BDF1_2_II Bromodomain

Probab=99.89  E-value=2e-23  Score=184.26  Aligned_cols=95  Identities=27%  Similarity=0.514  Sum_probs=89.6

Q ss_pred             CChHHHHHHHHh---CCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472           34 NWDPQRLYQIKS---YCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA  108 (602)
Q Consensus        34 ~~~~eiL~kLk~---~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~  108 (602)
                      .+|.+||.+|++   ++.+++|.+|||+.  .+|||+++|++||||++|++||+++.|+++++|..||+|||.||+.||+
T Consensus         3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~   82 (102)
T cd05499           3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP   82 (102)
T ss_pred             HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence            467788888887   46799999999998  8999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 007472          109 PDTIYFRQARSIHELAKKNF  128 (602)
Q Consensus       109 pdS~Vyk~Ak~L~e~fek~~  128 (602)
                      +++.++.+|..|++.|++.|
T Consensus        83 ~~s~~~~~a~~l~~~fe~~~  102 (102)
T cd05499          83 EGTDVYMMGHQLEEVFNDKW  102 (102)
T ss_pred             CCCHHHHHHHHHHHHHHHhC
Confidence            99999999999999998865

BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II

Probab=99.89  E-value=3.9e-23  Score=182.03  Aligned_cols=94  Identities=33%  Similarity=0.545  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHhC---CCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           35 WDPQRLYQIKSY---CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        35 ~~~eiL~kLk~~---~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      .|.+||.+|+++   +.+++|.+||++.  .+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus         4 ~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~   83 (102)
T cd05498           4 FCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPP   83 (102)
T ss_pred             HHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence            578999999999   8899999999987  59999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 007472          110 DTIYFRQARSIHELAKKNF  128 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~  128 (602)
                      ++.++.+|..|++.|++.|
T Consensus        84 ~s~i~~~a~~l~~~fe~~~  102 (102)
T cd05498          84 DHPVHAMARKLQDVFEDRW  102 (102)
T ss_pred             CCHHHHHHHHHHHHHHHhC
Confidence            9999999999999999875

Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily

Probab=99.89  E-value=2.9e-23  Score=183.10  Aligned_cols=89  Identities=38%  Similarity=0.611  Sum_probs=85.6

Q ss_pred             HHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHH
Q 007472           37 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ  116 (602)
Q Consensus        37 ~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~  116 (602)
                      ..+|.+|++++.+++|.+|||...+|||+++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|++
T Consensus         7 ~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~   86 (98)
T cd05512           7 RKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRA   86 (98)
T ss_pred             HHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 007472          117 ARSIHELAK  125 (602)
Q Consensus       117 Ak~L~e~fe  125 (602)
                      |.+|++..+
T Consensus        87 A~~l~~~~~   95 (98)
T cd05512          87 AVRLRDQGG   95 (98)
T ss_pred             HHHHHHhhc
Confidence            999988653

BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05500 Bromo_BDF1_2_I Bromodomain

Probab=99.89  E-value=4.6e-23  Score=182.53  Aligned_cols=94  Identities=23%  Similarity=0.482  Sum_probs=90.0

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           34 NWDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        34 ~~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      .+|.++|.+|++++.+++|.+|||+.  .+|||+++|++||||+||++||+++.|.++++|..||+|||.||+.||++++
T Consensus         7 ~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s   86 (103)
T cd05500           7 KFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEH   86 (103)
T ss_pred             HHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence            35778999999999999999999987  7999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 007472          112 IYFRQARSIHELAKKN  127 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~  127 (602)
                      .++.+|+.|++.|++.
T Consensus        87 ~~~~~A~~l~~~fe~~  102 (103)
T cd05500          87 PVSQMGKRLQAAFEKH  102 (103)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999875

BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily

Probab=99.88  E-value=5.4e-23  Score=185.28  Aligned_cols=98  Identities=29%  Similarity=0.556  Sum_probs=94.6

Q ss_pred             HHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHH
Q 007472           37 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ  116 (602)
Q Consensus        37 ~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~  116 (602)
                      .+++.+|++++.+++|.+||++..+|+||++|++||||+||++||+++.|+++++|..||+|||.||+.||++++.++++
T Consensus         6 ~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~   85 (112)
T cd05511           6 DEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKK   85 (112)
T ss_pred             HHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhCC
Q 007472          117 ARSIHELAKKNFENLRQD  134 (602)
Q Consensus       117 Ak~L~e~fek~~ekL~~e  134 (602)
                      |+.|.+.|++.++.++++
T Consensus        86 A~~l~~~~~~~~~~~~~~  103 (112)
T cd05511          86 AKEMLELAEELLAEREEK  103 (112)
T ss_pred             HHHHHHHHHHHHHHhHHH
Confidence            999999999999988654

Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily

Probab=99.88  E-value=1.8e-22  Score=179.85  Aligned_cols=95  Identities=24%  Similarity=0.324  Sum_probs=89.0

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|.+|..++.+++|..  ++..+|||+++|++||||+||++||.++.|.++++|.+||+|||.||+.||+++ .++
T Consensus         6 ~ce~il~~l~~~~~s~~f~~--~p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~   82 (102)
T cd05501           6 KCEFLLLKVYCMSKSGFFIS--KPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFG   82 (102)
T ss_pred             HHHHHHHHHHhCcccccccC--CCCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHH
Confidence            37789999999999999966  356899999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 007472          115 RQARSIHELAKKNFENLR  132 (602)
Q Consensus       115 k~Ak~L~e~fek~~ekL~  132 (602)
                      ++|..|++.|++.|+++-
T Consensus        83 ~~a~~L~~~Fek~~~~~f  100 (102)
T cd05501          83 QVGITLEKKFEKNFKEVF  100 (102)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998753

The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains

Probab=99.88  E-value=1.4e-22  Score=182.86  Aligned_cols=97  Identities=30%  Similarity=0.409  Sum_probs=92.1

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCC----C
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD----T  111 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pd----S  111 (602)
                      +.+++.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++    +
T Consensus         8 L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s   87 (112)
T cd05528           8 LRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADK   87 (112)
T ss_pred             HHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCcccc
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999995    6


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 007472          112 IYFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      .++.+|..|++.|++.++.+.
T Consensus        88 ~i~~~A~~L~~~~~~~~~~~~  108 (112)
T cd05528          88 LIRSRACELRDEVHAMIEAEL  108 (112)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999988653

Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver

>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals

Probab=99.87  E-value=2.5e-22  Score=179.49  Aligned_cols=94  Identities=26%  Similarity=0.508  Sum_probs=86.4

Q ss_pred             HHHHHHHhCCC------CCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           38 QRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        38 eiL~kLk~~~~------A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      .+|..++++..      +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++
T Consensus         8 ~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s   87 (107)
T cd05516           8 KIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGS   87 (107)
T ss_pred             HHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence            45555555554      899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 007472          112 IYFRQARSIHELAKKNFENL  131 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~~ekL  131 (602)
                      .+|.+|..|++.|++.++++
T Consensus        88 ~i~~~a~~l~~~f~~~~~~~  107 (107)
T cd05516          88 LIYEDSIVLQSVFKSARQKI  107 (107)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999988753

SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I

Probab=99.86  E-value=6.3e-22  Score=178.71  Aligned_cols=100  Identities=22%  Similarity=0.320  Sum_probs=91.4

Q ss_pred             ChHHHHHHHHhC------CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472           35 WDPQRLYQIKSY------CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA  108 (602)
Q Consensus        35 ~~~eiL~kLk~~------~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~  108 (602)
                      .|.+++..|+++      ..+.+|.++++...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus         6 ~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~   85 (113)
T cd05524           6 VCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYK   85 (113)
T ss_pred             HHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence            466777777753      44578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhCC
Q 007472          109 PDTIYFRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       109 pdS~Vyk~Ak~L~e~fek~~ekL~~e  134 (602)
                      +++.+|++|..|++.|++.++++...
T Consensus        86 ~~s~~~~~A~~L~~~f~~~~~~~~~~  111 (113)
T cd05524          86 PDSPEHKDACKLWELFLSARNEVLSG  111 (113)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999888654

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.

>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily

Probab=99.86  E-value=1.4e-21  Score=179.93  Aligned_cols=94  Identities=27%  Similarity=0.439  Sum_probs=88.7

Q ss_pred             HHHHHHHH---hCCCCCCCcCCCCCC-CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           37 PQRLYQIK---SYCCSSSIDFKMDPE-ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        37 ~eiL~kLk---~~~~A~~F~ePVDp~-~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      +.+|.+|.   +++.+++|..||++. .+|+|+++|++||||+||++||+++.|+++++|+.||+|||.||+.||++++.
T Consensus        30 ~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~  109 (128)
T cd05529          30 ISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSE  109 (128)
T ss_pred             HHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            35567777   899999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 007472          113 YFRQARSIHELAKKNFEN  130 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ek  130 (602)
                      ++++|++|++.|.+.+..
T Consensus       110 i~~~A~~l~~~~~~~l~~  127 (128)
T cd05529         110 IAKKAKRLSDWLLRILSS  127 (128)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999999888753

WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi

Probab=99.86  E-value=1.1e-21  Score=173.79  Aligned_cols=93  Identities=24%  Similarity=0.380  Sum_probs=84.6

Q ss_pred             hHHHHHHHH------hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           36 DPQRLYQIK------SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        36 ~~eiL~kLk------~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      |.+++..++      .+..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus         5 ~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~   84 (103)
T cd05519           5 MLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQE   84 (103)
T ss_pred             HHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence            345555555      45568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 007472          110 DTIYFRQARSIHELAKKNF  128 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~  128 (602)
                      ++.+|.+|+.|++.|++.+
T Consensus        85 ~s~i~~~A~~l~~~f~~~~  103 (103)
T cd05519          85 GSIVYEDAVEMEKAFKKKY  103 (103)
T ss_pred             CCHHHHHHHHHHHHHHHhC
Confidence            9999999999999998753

SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>smart00297 BROMO bromo domain

Probab=99.85  E-value=2.9e-21  Score=169.05  Aligned_cols=95  Identities=34%  Similarity=0.570  Sum_probs=90.9

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..++..+.+++.+++|.+||+...+|+|+++|++||||++|++||+++.|.++++|..||++||.||+.||++++.+++
T Consensus        12 ~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~   91 (107)
T smart00297       12 LKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYK   91 (107)
T ss_pred             HHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            45778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 007472          116 QARSIHELAKKNFEN  130 (602)
Q Consensus       116 ~Ak~L~e~fek~~ek  130 (602)
                      +|..|++.|++.+++
T Consensus        92 ~a~~l~~~f~~~~~~  106 (107)
T smart00297       92 DAKKLEKFFEKKLRE  106 (107)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998875

>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III

Probab=99.85  E-value=2.1e-21  Score=172.77  Aligned_cols=82  Identities=29%  Similarity=0.541  Sum_probs=78.4

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      +..+++|.++|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|++|..|+++|+
T Consensus        21 ~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~  100 (103)
T cd05520          21 QLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQ  100 (103)
T ss_pred             CCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HH
Q 007472          126 KN  127 (602)
Q Consensus       126 k~  127 (602)
                      +.
T Consensus       101 ~~  102 (103)
T cd05520         101 AK  102 (103)
T ss_pred             Hh
Confidence            63

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=99.85  E-value=2.6e-21  Score=224.59  Aligned_cols=312  Identities=27%  Similarity=0.311  Sum_probs=206.5

Q ss_pred             hhhHHHHHHHHHHHH-HHHHHH-hccCCcCChH--HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHh
Q 007472            7 LAVLTVKRERRLFLV-RIQQIT-TKGLSWNWDP--QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLA   82 (602)
Q Consensus         7 lA~l~~krErRk~~~-rl~~i~-~~~L~~~~~~--eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~   82 (602)
                      +-++.++||+.+... .++... ..++......  .+|.+++..+....|.+|||+.++|||.++|++||||.||+.+++
T Consensus       537 l~e~~r~r~~lk~~~~~~~~~~~~~~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~  616 (1051)
T KOG0955|consen  537 LVELTRKREKLKRILVKSQKEALELGLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLE  616 (1051)
T ss_pred             HHHhhhhHHHHHHHHhchhhhhhcccCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhcc
Confidence            455666666665442 222222 2233333222  567899999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHHHhhhCCCCCCC-cccc--------cccCCCCCCC
Q 007472           83 NGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE-PETK--------VVRRGRPPTK  153 (602)
Q Consensus        83 ~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~ekL~~e~e~~E-~e~k--------v~rr~Rpp~k  153 (602)
                      ++.|+++++|++|+.||+.||+.||..++.+|++|.++++...+.+.+.+.+.+... .+..        +.+..++...
T Consensus       617 s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~  696 (1051)
T KOG0955|consen  617 SGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRP  696 (1051)
T ss_pred             ccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCcc
Confidence            999999999999999999999999999999999999999999999999888766544 2211        1122333333


Q ss_pred             CCCCCCCCCccccccCCCCCccccccCCCCcc--cccc-ccCCCCCCCCCCcccccccccCCCCCCccccccccccccc-
Q 007472          154 NFKKPLGRPSLERARSDFSSDVTLASGAENTA--LTNR-DLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLER-  229 (602)
Q Consensus       154 ~~KK~~~rps~e~~~sd~Ss~atlA~g~e~~~--~s~~-d~~~~~~~~~k~g~~~~~~~~~g~~~~~~~~~~~~~~~e~-  229 (602)
                      ..............-...+.+.-+...-+...  .+.. +.++.    . .+..  .+ ++-++   ..-|.+ ...|. 
T Consensus       697 ~~~~~e~~~v~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~----~-~~~~--~~-~~~s~---~r~~~~-~~~e~~  764 (1051)
T KOG0955|consen  697 NLWAPEEPQVDLETFINLSKEHDLKIPLDKNEKKKATKLSIPRN----R-DSRI--IR-KEKSR---LRKCGI-VDTETS  764 (1051)
T ss_pred             ccccccccccccccccccChhhhhccccccchhhhhhhcccccc----c-cccc--ch-hhHHH---HhhccC-cCcccc
Confidence            33333222211111222222211111100000  0000 00000    0 0000  00 00000   000111 00010 


Q ss_pred             -cccc--ccccCCccCCCCcccccccccccccccccccccCCceeccccccccceeEeccCCcchhHHHHHHHHHhhChH
Q 007472          230 -NDEV--SLSKGYSMKHGKKQVVLDENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPV  306 (602)
Q Consensus       230 -~~e~--s~~~g~~~k~G~k~~~~dE~RR~TY~~~~~s~~~~svft~~~~e~K~Lv~VG~~~e~~YArSLarFaa~lGp~  306 (602)
                       ..+.  +..+++ .|+|.+.    .+++.+|.+..++-.++++++.+..+.|++-|+++-.+.+|+||+++.+++.+++
T Consensus       765 ~~~~~p~~~~~~~-~~~~~~~----~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~  839 (1051)
T KOG0955|consen  765 GSPSIPSGGEKTV-KKDGLNS----KNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTAS  839 (1051)
T ss_pred             CCCCCCCccccch-hcccccc----cccccccchhhcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcc
Confidence             0000  112232 3455543    6899999998777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCCccCCcccccCCC
Q 007472          307 AWKIAARRIERCLPAGVRFGPGWVVENDL  335 (602)
Q Consensus       307 aw~iAs~rI~~~Lp~g~~FG~GWVge~e~  335 (602)
                      ||.+|+.+++..++.+..||.||+++...
T Consensus       840 ~~~~~~~~~~~~~~~~~~~g~g~~~~tP~  868 (1051)
T KOG0955|consen  840 ANNLASTSCSVTKATFTGNGVGGDVKTPK  868 (1051)
T ss_pred             cccccccccccccCCccCCCCCccccCCC
Confidence            99999999999999999999999666544

>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V

Probab=99.84  E-value=3.9e-21  Score=171.21  Aligned_cols=85  Identities=26%  Similarity=0.471  Sum_probs=80.5

Q ss_pred             hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472           45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA  124 (602)
Q Consensus        45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f  124 (602)
                      .++.+++|.+||+.+++||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++.+|++|..|++.|
T Consensus        20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~   99 (105)
T cd05515          20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVL   99 (105)
T ss_pred             CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 007472          125 KKNFE  129 (602)
Q Consensus       125 ek~~e  129 (602)
                      .+..+
T Consensus       100 ~~~~~  104 (105)
T cd05515         100 LETKR  104 (105)
T ss_pred             HHHHc
Confidence            77653

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.

>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV

Probab=99.84  E-value=8e-21  Score=169.09  Aligned_cols=83  Identities=25%  Similarity=0.410  Sum_probs=79.5

Q ss_pred             HhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHH
Q 007472           44 KSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL  123 (602)
Q Consensus        44 k~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~  123 (602)
                      ..+..+.+|..+|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.+|.+|..|+.+
T Consensus        19 ~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~   98 (103)
T cd05518          19 SGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKV   98 (103)
T ss_pred             CCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 007472          124 AKK  126 (602)
Q Consensus       124 fek  126 (602)
                      |++
T Consensus        99 ~~~  101 (103)
T cd05518          99 LKE  101 (103)
T ss_pred             HHh
Confidence            875

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.

>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II

Probab=99.83  E-value=9.4e-21  Score=168.55  Aligned_cols=81  Identities=27%  Similarity=0.484  Sum_probs=77.4

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      +..+++|.++++...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|++.|+
T Consensus        21 r~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~  100 (103)
T cd05517          21 RLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFT  100 (103)
T ss_pred             CChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             H
Q 007472          126 K  126 (602)
Q Consensus       126 k  126 (602)
                      .
T Consensus       101 ~  101 (103)
T cd05517         101 A  101 (103)
T ss_pred             h
Confidence            4

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.

>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family

Probab=99.83  E-value=1.1e-20  Score=168.99  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=78.2

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      +..+++|.++++...+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++.+|++|..|++.|+
T Consensus        23 ~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~  102 (106)
T cd05525          23 QSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYY  102 (106)
T ss_pred             CcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HH
Q 007472          126 KN  127 (602)
Q Consensus       126 k~  127 (602)
                      +.
T Consensus       103 ~~  104 (106)
T cd05525         103 QA  104 (106)
T ss_pred             Hc
Confidence            53

ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []

Probab=99.83  E-value=9.6e-21  Score=159.04  Aligned_cols=84  Identities=42%  Similarity=0.686  Sum_probs=79.9

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |.++|.+|++++.+++|.+||+...+|+|+++|++||||++|++||+++.|+++++|..||++||.||+.||++++.+|+
T Consensus         1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~   80 (84)
T PF00439_consen    1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK   80 (84)
T ss_dssp             HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred             CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 007472          116 QARS  119 (602)
Q Consensus       116 ~Ak~  119 (602)
                      +|++
T Consensus        81 ~A~~   84 (84)
T PF00439_consen   81 AAEK   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9974

Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....

>cd04369 Bromodomain Bromodomain

Probab=99.82  E-value=2.3e-20  Score=157.62  Aligned_cols=93  Identities=41%  Similarity=0.610  Sum_probs=88.6

Q ss_pred             ChHHHHHHHHhC--CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           35 WDPQRLYQIKSY--CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        35 ~~~eiL~kLk~~--~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      .|..++..++.+  +.+.+|..||++..+|+|+++|++||||.+|++||+++.|.++++|..||++||.||+.||+.++.
T Consensus         4 ~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~   83 (99)
T cd04369           4 KLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSP   83 (99)
T ss_pred             HHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            356788889888  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007472          113 YFRQARSIHELAKKN  127 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~  127 (602)
                      ++++|..|+..|++.
T Consensus        84 ~~~~a~~l~~~~~~~   98 (99)
T cd04369          84 IYKDAKKLEKLFEKL   98 (99)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998875

Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi

Probab=99.81  E-value=5.2e-20  Score=163.84  Aligned_cols=82  Identities=22%  Similarity=0.376  Sum_probs=79.0

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      ++.+++|.++|+.+.+||||++|++||||+||++||+++.|.++++|+.|++|||.||+.||++++.+|.+|..|++.|+
T Consensus        22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~  101 (104)
T cd05522          22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEAR  101 (104)
T ss_pred             CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HH
Q 007472          126 KN  127 (602)
Q Consensus       126 k~  127 (602)
                      +.
T Consensus       102 ~l  103 (104)
T cd05522         102 LL  103 (104)
T ss_pred             Hh
Confidence            64

Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family

Probab=99.79  E-value=3.1e-19  Score=160.80  Aligned_cols=94  Identities=20%  Similarity=0.341  Sum_probs=84.3

Q ss_pred             HHHHHHh-CCCCCCCcCCCCCC-----CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           39 RLYQIKS-YCCSSSIDFKMDPE-----ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        39 iL~kLk~-~~~A~~F~ePVDp~-----~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      ++.++++ .+.+.+|..||.++     .+|+|+++|++||||+||++||+++.|++++||..||.|||+||+.||++++.
T Consensus         8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~   87 (109)
T cd05492           8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSE   87 (109)
T ss_pred             HHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            4566666 56679999999733     49999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 007472          113 YFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      ++.+|+.|.+.....+.++.
T Consensus        88 ~~~~A~~l~~d~~~el~Ei~  107 (109)
T cd05492          88 QYDAARWLYRDTCHDLRELR  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999888877777664

ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi

Probab=99.79  E-value=3.5e-19  Score=159.48  Aligned_cols=82  Identities=21%  Similarity=0.382  Sum_probs=76.6

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      +..+.+|...++.+.+||||++|++||||+||++||++  |.++++|+.|+.|||+||+.||++++.+|++|..|++.|.
T Consensus        22 ~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~   99 (106)
T cd05521          22 IEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYIN   99 (106)
T ss_pred             CCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            34567999999999999999999999999999999998  9999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 007472          126 KNFE  129 (602)
Q Consensus       126 k~~e  129 (602)
                      +.+.
T Consensus       100 ~~~~  103 (106)
T cd05521         100 DVII  103 (106)
T ss_pred             Hhhc
Confidence            7653

Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]

Probab=99.64  E-value=2.8e-16  Score=166.89  Aligned_cols=91  Identities=32%  Similarity=0.496  Sum_probs=85.7

Q ss_pred             hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472           45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA  124 (602)
Q Consensus        45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f  124 (602)
                      ......+|..+|+...+|+||.||+.||||.+|++||+.+.|+++++|..|+.|||.||..||++++.+|.+|+.|++.|
T Consensus       162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~  241 (371)
T COG5076         162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF  241 (371)
T ss_pred             ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCC
Q 007472          125 KKNFENLRQDS  135 (602)
Q Consensus       125 ek~~ekL~~e~  135 (602)
                      .+.++.+....
T Consensus       242 ~~~i~~~~~~~  252 (371)
T COG5076         242 LKLIEEIPEEM  252 (371)
T ss_pred             HHHHHhccccc
Confidence            99999886543

>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI

Probab=99.62  E-value=8.4e-16  Score=138.90  Aligned_cols=84  Identities=19%  Similarity=0.339  Sum_probs=76.7

Q ss_pred             CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHH
Q 007472           47 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK  126 (602)
Q Consensus        47 ~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek  126 (602)
                      ..+.+|.+.+.  ..++|+.+|++||||.+|++||++|.|+++++|.+||.|||.||++||.++|.+|++|..|+.+|.+
T Consensus        25 ~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~  102 (110)
T cd05526          25 CYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIK  102 (110)
T ss_pred             CchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHH
Confidence            45678888766  4578889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhh
Q 007472          127 NFENLR  132 (602)
Q Consensus       127 ~~ekL~  132 (602)
                      ...++.
T Consensus       103 ~rd~~~  108 (110)
T cd05526         103 IRDELC  108 (110)
T ss_pred             HHHHHh
Confidence            877664

Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=99.61  E-value=6e-16  Score=185.83  Aligned_cols=95  Identities=26%  Similarity=0.459  Sum_probs=91.8

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..||.+|..|+.||+|.+||++..+||||+||++||||+||+.|+..+.|.+.++|..||.|||.||.+||.. +.+++
T Consensus      1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred             HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 007472          116 QARSIHELAKKNFENL  131 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL  131 (602)
                      +...|..+|++.|...
T Consensus      1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred             hcchHHHHHHHHHHhh
Confidence            9999999999977654

>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]

Probab=99.40  E-value=1.9e-13  Score=154.51  Aligned_cols=96  Identities=29%  Similarity=0.494  Sum_probs=91.4

Q ss_pred             HHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHH
Q 007472           37 PQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ  116 (602)
Q Consensus        37 ~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~  116 (602)
                      ..+|.+|.+|..+|+|.+||+..++||||++|++||||.||+.+|.++.|...+.|+.|+.+||.||+.||+.++.+|+.
T Consensus       612 ~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~  691 (720)
T KOG1472|consen  612 QNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKC  691 (720)
T ss_pred             HhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheec
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 007472          117 ARSIHELAKKNFENLR  132 (602)
Q Consensus       117 Ak~L~e~fek~~ekL~  132 (602)
                      |..|...|...+....
T Consensus       692 ~~~le~~~~~k~~~~i  707 (720)
T KOG1472|consen  692 AQALEKFFLFKLNELI  707 (720)
T ss_pred             ccchhhhhcchhhhhh
Confidence            9999999877776553

>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily

Probab=99.13  E-value=1.9e-11  Score=111.04  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCC--CCCCcccccccCccCHHHHHHHHhcC-------CCCCHHHHHHHHHHHHHHhch
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDP--EELPDYCEVIEHPMDFGTVRNKLANG-------AYATLEQFEKDVFLICSNAMQ  105 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp--~~lPDY~dIIK~PMDLsTIkkKL~~g-------~Y~SveEF~~DV~LIfsNA~~  105 (602)
                      +|.++|+++.+++.+++|.+||++  ..+|||+++||+||||+||++||.+.       .|..-+.+.+++..++.||..
T Consensus         7 ~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (114)
T cd05494           7 RVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSP   86 (114)
T ss_pred             HHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCc
Confidence            456777888888899999999999  78999999999999999999999987       345555566777777777777


Q ss_pred             hcCC
Q 007472          106 YNAP  109 (602)
Q Consensus       106 YN~p  109 (602)
                      +|..
T Consensus        87 ~~~~   90 (114)
T cd05494          87 SNIY   90 (114)
T ss_pred             cccc
Confidence            7754

Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi

Probab=98.91  E-value=1e-09  Score=100.61  Aligned_cols=43  Identities=33%  Similarity=0.408  Sum_probs=40.3

Q ss_pred             cCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           69 EHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        69 K~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      -.||||+||++||.+|.|.++++|+.||+|||.||+.||.++.
T Consensus        62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr  104 (119)
T cd05491          62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER  104 (119)
T ss_pred             EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence            3689999999999999999999999999999999999998753

TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]

Probab=98.83  E-value=2.3e-09  Score=126.41  Aligned_cols=93  Identities=28%  Similarity=0.457  Sum_probs=86.3

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472           38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA  117 (602)
Q Consensus        38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A  117 (602)
                      .++.++++.+.+|+|.+||+.+.+|+||.+|++||||.+|.+++....|.+..||.+||++|+.||..||+.++.+.+-|
T Consensus      1389 ~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~ 1468 (1563)
T KOG0008|consen 1389 NIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKA 1468 (1563)
T ss_pred             hHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHH
Confidence            55668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 007472          118 RSIHELAKKNFEN  130 (602)
Q Consensus       118 k~L~e~fek~~ek  130 (602)
                      +++-++....+.+
T Consensus      1469 ~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1469 RKIGEVGLANLLE 1481 (1563)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988877655543

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]

Probab=98.65  E-value=3.1e-08  Score=115.00  Aligned_cols=89  Identities=24%  Similarity=0.423  Sum_probs=83.4

Q ss_pred             hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472           45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA  124 (602)
Q Consensus        45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f  124 (602)
                      .+..+..|...+....+||||+||++||++..|+++|++..|.+..+...|+.++|.||+.||..+|.+|..|..|+.++
T Consensus      1044 ~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~ 1123 (1157)
T KOG0386|consen 1044 GRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVF 1123 (1157)
T ss_pred             ccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHH
Confidence            34556899999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhC
Q 007472          125 KKNFENLRQ  133 (602)
Q Consensus       125 ek~~ekL~~  133 (602)
                      ......+..
T Consensus      1124 ~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1124 KSARQEISK 1132 (1157)
T ss_pred             hhhHHHHhc
Confidence            988888765

>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]

Probab=98.62  E-value=6.9e-08  Score=108.70  Aligned_cols=81  Identities=23%  Similarity=0.489  Sum_probs=76.0

Q ss_pred             CCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHH
Q 007472           49 SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNF  128 (602)
Q Consensus        49 A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~  128 (602)
                      ...|.+..+....|+||.+|..||.|..|++|+..+.|.+++.|+.|++||++||..||.+++.+|+++..|+..|....
T Consensus        76 ~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~  155 (629)
T KOG1827|consen   76 FDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLE  155 (629)
T ss_pred             chhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence            46788888899999999999999999999999999999999999999999999999999999999999999999887655


Q ss_pred             H
Q 007472          129 E  129 (602)
Q Consensus       129 e  129 (602)
                      .
T Consensus       156 ~  156 (629)
T KOG1827|consen  156 D  156 (629)
T ss_pred             c
Confidence            3

>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]

Probab=98.46  E-value=1.2e-07  Score=108.21  Aligned_cols=73  Identities=30%  Similarity=0.487  Sum_probs=67.1

Q ss_pred             hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472           45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA  117 (602)
Q Consensus        45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A  117 (602)
                      ++..+++|.++|+.+..|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||...+...+.-
T Consensus       300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~  372 (720)
T KOG1472|consen  300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEF  372 (720)
T ss_pred             ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhh
Confidence            4678999999999999999999999999999999999999999999999999999999999999866544433

>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]

Probab=98.46  E-value=2.1e-08  Score=106.82  Aligned_cols=94  Identities=27%  Similarity=0.281  Sum_probs=85.8

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      |..++++++-+.+.-..|..||...-.|+|.+||+.|||+.|++.|++.++|.++.+|..|.++|+.||..||..++.++
T Consensus        23 ~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~  102 (418)
T KOG1828|consen   23 DAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPI  102 (418)
T ss_pred             hHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccc
Confidence            34467778878888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 007472          115 RQARSIHELAKKNF  128 (602)
Q Consensus       115 k~Ak~L~e~fek~~  128 (602)
                      ..|++|..+.-..+
T Consensus       103 ~aaKrL~~v~~~~~  116 (418)
T KOG1828|consen  103 VAAKRLCPVRLGMT  116 (418)
T ss_pred             ccccccchhhcchh
Confidence            99999987764444

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]

Probab=98.44  E-value=2.6e-07  Score=109.61  Aligned_cols=87  Identities=29%  Similarity=0.413  Sum_probs=81.5

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472           38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA  117 (602)
Q Consensus        38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A  117 (602)
                      .++.++...+...+|..||+..+++|||.||+.||||.++|+.+....|.+-++|.+|+.||++|..+||++.+.+..++
T Consensus      1268 ~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~ 1347 (1563)
T KOG0008|consen 1268 TIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQ 1347 (1563)
T ss_pred             HHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHH
Confidence            56778888999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHH
Q 007472          118 RSIHELA  124 (602)
Q Consensus       118 k~L~e~f  124 (602)
                      ..+...+
T Consensus      1348 q~mls~~ 1354 (1563)
T KOG0008|consen 1348 QSMLSLC 1354 (1563)
T ss_pred             HHHHHHH
Confidence            8775554

>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised

Probab=98.41  E-value=1.1e-07  Score=96.66  Aligned_cols=126  Identities=19%  Similarity=0.248  Sum_probs=90.6

Q ss_pred             cccCCCCCCCCCCcccccccccCCCCCCccccccccccccccccc----ccccCCccCCCCccc-cccccccccccccc-
Q 007472          189 RDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEV----SLSKGYSMKHGKKQV-VLDENRRNTYKQFH-  262 (602)
Q Consensus       189 ~d~~~~~~~~~k~g~~~~~~~~~g~~~~~~~~~~~~~~~e~~~e~----s~~~g~~~k~G~k~~-~~dE~RR~TY~~~~-  262 (602)
                      ++..++..+..++||...-.  +|+...... ...++..+.+++.    +.+.|+ +..|-..+ +|.|+||+..+|.. 
T Consensus        43 r~rl~~~~~~~k~gFlr~~~--DGtt~l~vl-n~~~~~~~~~~~~pV~Lg~l~gk-L~~G~~tL~gfkEdrrnkvtpv~y  118 (245)
T PF12024_consen   43 RDRLNRRLPNSKMGFLRRKK--DGTTTLNVL-NPVDPEAGEEEYRPVDLGSLSGK-LQSGTNTLQGFKEDRRNKVTPVSY  118 (245)
T ss_pred             HHHHhhcccccccchhcccC--CCCEEEEEe-ecCCCCCCCCCCceeeHHHhhcc-ccCCcccccccchhhccceeeecc
Confidence            33444455677899986543  676422111 1123332222222    788898 45887777 89999999988842 


Q ss_pred             -----cc---ccCCceeccccccccceeEeccCCcch--hHHHHHHHHHhhChHHHHHHHHHHhhh
Q 007472          263 -----QS---LRESSVLTTFDADKKQLMTVGLHSEHG--YTRSLARFAANLGPVAWKIAARRIERC  318 (602)
Q Consensus       263 -----~s---~~~~svft~~~~e~K~Lv~VG~~~e~~--YArSLarFaa~lGp~aw~iAs~rI~~~  318 (602)
                           .+   -..+|.|+++..|.-+||+..|+.+++  ||.||.+|++++|-++.+||...|...
T Consensus       119 l~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~~~~~y~~~~vd~LLD~l  184 (245)
T PF12024_consen  119 LNYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVKDCGSYAYKMVDDLLDVL  184 (245)
T ss_pred             cccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhhcCchHHHHHHhhhhhhh
Confidence                 12   345588888888889999999999998  999999999999999999999888765

This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.

>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]

Probab=98.21  E-value=3.5e-07  Score=104.41  Aligned_cols=95  Identities=24%  Similarity=0.374  Sum_probs=86.4

Q ss_pred             HhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472           44 KSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH  121 (602)
Q Consensus        44 k~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~  121 (602)
                      ..|.++|.|..||+..  .+++||.+|++|||++||+.++++..|.+..+..+|+..+|.||..||.+...++.++..++
T Consensus         5 ~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~   84 (640)
T KOG1474|consen    5 RKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLE   84 (640)
T ss_pred             ccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccch
Confidence            4577899999999976  68999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCCC
Q 007472          122 ELAKKNFENLRQDSDDN  138 (602)
Q Consensus       122 e~fek~~ekL~~e~e~~  138 (602)
                      ..|.+....+..+..+.
T Consensus        85 ~~~~~~~~~~~~~~~d~  101 (640)
T KOG1474|consen   85 KLFPKKLRSMPSDEEDK  101 (640)
T ss_pred             hhcccccccccccccCC
Confidence            99988888776655443

>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]

Probab=98.15  E-value=1e-06  Score=94.11  Aligned_cols=82  Identities=17%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             HHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHH
Q 007472           40 LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS  119 (602)
Q Consensus        40 L~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~  119 (602)
                      ..++..-+...+|..++....+|.|..+|++++|+.|+++|..++.|.| -+|..|+.|||.||++||.++..+|++|+.
T Consensus       217 ~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank  295 (418)
T KOG1828|consen  217 EDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK  295 (418)
T ss_pred             HHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence            3456666778899999999999999999999999999999999999999 899999999999999999999999999998


Q ss_pred             HHH
Q 007472          120 IHE  122 (602)
Q Consensus       120 L~e  122 (602)
                      +..
T Consensus       296 ~lh  298 (418)
T KOG1828|consen  296 QLH  298 (418)
T ss_pred             hhh
Confidence            877

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]

Probab=96.59  E-value=0.00083  Score=72.17  Aligned_cols=90  Identities=28%  Similarity=0.401  Sum_probs=81.7

Q ss_pred             HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472           42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH  121 (602)
Q Consensus        42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~  121 (602)
                      ....+-.+|+|..++.....|+|+++|..+|+++|.+.++..+.|+..++|+.|..++++||..||+....+++.+..+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (371)
T COG5076         274 NSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE  353 (371)
T ss_pred             ccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhh
Q 007472          122 ELAKKNFENL  131 (602)
Q Consensus       122 e~fek~~ekL  131 (602)
                      ..+.+.+...
T Consensus       354 ~~~~~~~~~~  363 (371)
T COG5076         354 DFVIKKTRLI  363 (371)
T ss_pred             hhHhhhhhhh
Confidence            8876666544

>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins

Probab=95.91  E-value=0.015  Score=54.89  Aligned_cols=64  Identities=20%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             CccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHHHHhhhC
Q 007472           70 HPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus        70 ~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      .|-||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+...++-++-..++-+|-+.++.+..
T Consensus        58 ~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~  121 (131)
T cd05493          58 PPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP  121 (131)
T ss_pred             CcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence            3899999999999999999999999999999988877666555556555566677777777654

ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=91.00  E-value=0.18  Score=59.37  Aligned_cols=63  Identities=17%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             cccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHHH
Q 007472           65 CEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN  127 (602)
Q Consensus        65 ~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek~  127 (602)
                      ..--.-|..|+.|+.||++..|++.+.|.+|+..|.+||.+|.+.+.-+-..+..|...|.+.
T Consensus      1047 ~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1047 DNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred             CCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence            333456899999999999999999999999999999999999998775555556666555443

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=84.27  E-value=0.71  Score=56.23  Aligned_cols=63  Identities=21%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CCCCCcCCCCCCC-----CCcccccccCccCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHhchhcCCC
Q 007472           48 CSSSIDFKMDPEE-----LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEK--DVFLICSNAMQYNAPD  110 (602)
Q Consensus        48 ~A~~F~ePVDp~~-----lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~--DV~LIfsNA~~YN~pd  110 (602)
                      ....|..|+++..     +++|..+|+.+||+...-.|+....|.++.+|+.  ++.|||.|++.||+..
T Consensus       532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~  601 (1080)
T KOG0732|consen  532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK  601 (1080)
T ss_pred             cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence            3578888888653     5689999999999999999999999999999999  9999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	602
3hme_A	123	Crystal Structure Of Human Bromodomain Containing 9		3e-12
3rcw_A	135	Crystal Structure Of The Bromodomain Of Human Brd1		1e-11
2i7k_A	117	Solution Structure Of The Bromodomain Of Human Brd7		1e-10
2d9e_A	121	Solution Structure Of The Bromodomain Of Peregrin L		3e-10
2i8n_A	114	Solution Structure Of The Second Bromodomain Of Brd		2e-09
3jvl_A	120	Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le		4e-09
3dai_A	130	Crystal Structure Of The Bromodomain Of The Human A		1e-08
3lxj_A	136	Crystal Structure Of The Bromodomain Of Human Aaa D		1e-08
2lsp_B	128	Solution Structures Of Brd4 Second Bromodomain With		3e-08
2ouo_A	130	Crystal Structure Of The Bromo Domain 2 In Human Br		3e-08
2grc_A	129	1.5 A Structure Of Bromodomain From Human Brg1 Prot		3e-08
3uvd_A	124	Crystal Structure Of The Bromodomain Of Human Trans		8e-08
2h60_A	128	Solution Structure Of Human Brg1 Bromodomain Length		8e-08
3aad_A	292	Structure Of The Histone Chaperone Cia/asf1-double		1e-07
3uv5_A	265	Crystal Structure Of The Tandem Bromodomains Of Hum		1e-07
1eqf_A	280	Crystal Structure Of The Double Bromodomain Module		1e-07
2g4a_A	116	Solution Structure Of A Bromodomain From Ring3 Prot		1e-07
3uv4_A	158	Crystal Structure Of The Second Bromodomain Of Huma		2e-07
2e7n_A	117	Solution Structure Of The Second Bromodomain From H		2e-07
2dvv_A	112	Crystal Structure Of The Second Bromodomain Of The		2e-07
3oni_A	114	Crystal Structure Of The Second Bromodomain Of Huma		2e-07
2dww_A	114	Crystal Structure Of Bromodomain-Containing Protein		2e-07
2oo1_A	113	Crystal Structure Of The Bromo Domain 2 Of Human Br		2e-07
3hmf_A	116	Crystal Structure Of The Second Bromodomain Of Huma		2e-07
3ljw_A	120	Crystal Structure Of The Second Bromodomain Of Huma		2e-07
2dat_A	123	Solution Structure Of The Bromodomain Of Human SwiS		3e-07
2ktb_B	121	Solution Structure Of The Second Bromodomain Of Hum		3e-07
2dkw_A	131	Solution Structure Of The Bromodomain Of Human Prot		7e-07
2e7o_A	112	Solution Structure Of The Bromodomain From Human Br		1e-06
3g0l_A	117	Crystal Structure Of Human Bromodomain Adjacent To		1e-06
3hmh_A	155	Crystal Structure Of The Second Bromodomain Of Huma		1e-06
3q2e_A	123	Crystal Structure Of The Second Bromodomain Of Huma		1e-06
3d7c_A	112	Crystal Structure Of The Bromodomain Of Human Gcn5,		1e-06
1e6i_A	121	Bromodomain From Gcn5 Complexed With Acetylated H4		2e-06
3dwy_A	119	Crystal Structure Of The Bromodomain Of Human Crebb		2e-06
1jsp_B	121	Nmr Structure Of Cbp Bromodomain In Complex With P5		2e-06
2wp1_A	126	Structure Of Brdt Bromodomain 2 Bound To An Acetyla		2e-06
1f68_A	103	Nmr Solution Structure Of The Bromodomain From Huma		4e-06
3i3j_A	124	Crystal Structure Of The Bromodomain Of Human Ep300		4e-06
2r10_A	361	Structure Of An Acetylated Rsc4 Tandem Bromodomain		9e-06
3k2j_A	130	Crystal Structure Of The 3rd Bromodomain Of Human P		1e-05
2r0v_A	346	Structure Of The Rsc4 Tandem Bromodomain Acetylated		1e-05
3mb3_A	135	Crystal Structure Of The Second Bromodomain Of Plec		2e-05
3g0j_A	124	Crystal Structure Of The Fifth Bromodomain Of Human		2e-05
2yqd_A	120	Solution Structure Of The Fifth Bromodomain From Mo		3e-05
3gg3_A	119	Crystal Structure Of The Bromodomain Of Human Pcaf		3e-05
3fkm_X	166	Plasmodium Falciparum Bromodomain-Containing Protei		4e-05
1n72_A	118	Structure And Ligand Of A Histone Acetyltransferase		4e-05
3o33_A	184	Crystal Structure Of Trim24 Phd-Bromo In The Free S		4e-05
3qzv_A	174	Crystal Structure Of Bptf Phd-Linker-Bromo In Compl		7e-05
2ri7_A	174	Crystal Structure Of Phd Finger-Linker-Bromodomain		7e-05
2rfj_A	119	Crystal Structure Of The Bromo Domain 1 In Human Br		1e-04
3qzs_A	115	Crystal Structure Of Bptf Bromo In Complex With His		1e-04
2yyn_A	135	Crystal Sturcture Of Human Bromodomain Protein Leng		1e-04
3qzt_A	115	Crystal Structure Of Bptf Bromo In Complex With His		1e-04
2r0y_A	311	Structure Of The Rsc4 Tandem Bromodomain In Complex		2e-04
2r0s_A	285	Crystal Structure Of The Rsc4 Tandem Bromodomain Le		2e-04
3uv2_A	126	Crystal Structure Of The Bromodomain Of Human Nucle		2e-04
2l5e_A	128	Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt		4e-04
2ydw_A	153	Crystal Structure Of The First Bromodomain Of Human		4e-04
4a9e_A	154	N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-		4e-04
2nxb_A	123	Crystal Structure Of Human Bromodomain Containing P		5e-04
2yw5_A	138	Solution Structure Of The Bromodomain From Human Br		6e-04
3nxb_A	116	Crystal Structure Of The Bromodomain Of Human Cecr2		7e-04
3tlp_A	150	Crystal Structure Of The Fourth Bromodomain Of Huma		8e-04

>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ A+ I
Sbjct: 44  PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 102

>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQAR 118
           +E+PDY + I+HPMDF T+R +L    Y  L +FE+D  LI  N M+YNA DT+++R A 
Sbjct: 41  KEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAV 100
Query: 119 SIHELAKKNFENLRQDSD 136
            + +         R++ D
Sbjct: 101 RLRDQGGVVLRQARREVD 118

>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 38  QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVF 97
           Q + Q++    S+   F +     P Y  +I+HPMDF T++ K+ N  Y ++E+ + +  
Sbjct: 15  QLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFK 74
Query: 98  LICSNAMQYNAPDTIYFRQARSI 120
           L+C+NAM YN P+TIY++ A+ +
Sbjct: 75  LMCTNAMIYNKPETIYYKAAKKL 97

>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           E+PDY + I+ PMDF T++  L    Y   + FE+D  LI SN ++YNA DTI++R A  
Sbjct: 36  EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVR 95
Query: 120 IHE 122
           + E
Sbjct: 96  LRE 98

>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DYC++I+HPMD  T+++KL    Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 36  LHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 95
Query: 121 HELAKKNFENLRQ 133
            ++ +  F  + Q
Sbjct: 96  QDVFEMRFAKMLQ 108

>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DYC++I+HPMD  T+++KL +  Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 44  LHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 103
Query: 121 HELAKKNFENLRQDSDDNEPE 141
            ++ +  F  +      +EPE
Sbjct: 104 QDVFEMRFAKM-----PDEPE 119

>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 110
           +DP+E+PDY  VI+ PMD  +V +K+    Y T++ + +D+ LICSNA++YN PD
Sbjct: 35  VDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN-PD 88

>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 110
           +D EE+ DY EVI+ PMD  TV  K+    Y T + F KD+ LICSNA++YN PD
Sbjct: 37  VDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN-PD 90

>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DYC++I+HPMD  T+++KL    Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 55  LHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 114
Query: 121 HELAKKNFENL 131
            ++ +  F  +
Sbjct: 115 QDVFEMRFAKM 125

>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DYC++I+HPMD  T+++KL    Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 57  LHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 116
Query: 121 HELAKKNFENL 131
            ++ +  F  +
Sbjct: 117 QDVFEMRFAKM 127

>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQAR 118
           +ELP+Y E+I  P+DF  ++ ++ N  Y +L   EKDV L+C NA  +N   ++ +  + 
Sbjct: 46  KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI 105
Query: 119 SIHELAKKNFENLRQ---DSDDNEPE 141
            +  +    F ++RQ     DD+E E
Sbjct: 106 VLQSV----FTSVRQKIEKEDDSEGE 127

>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           +ELP+Y E+I  P+DF  ++ ++ N  Y +L   EKDV L+C NA  +N   ++ +
Sbjct: 47  KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 102

>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           +ELP+Y E+I  P+DF  ++ ++ N  Y +L   EKDV L+C NA  +N   ++ +
Sbjct: 42  KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 97

>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + A+ I
Sbjct: 200 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 259

>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + A+ I
Sbjct: 167 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 226

>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + A+ I
Sbjct: 179 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 238

>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DY ++I+HPMD  TV+ K+ N  Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 36  LHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKL 95
Query: 121 HEL 123
            ++
Sbjct: 96  QDV 98

>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + A+ I
Sbjct: 60  VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 119

>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           EL DY ++I+HPMD  TV+ K+    Y   + F  DV L+ SN  +YN PD      AR 
Sbjct: 46  ELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARK 105
Query: 120 IHELAKKNFENL 131
           + ++ +  F  +
Sbjct: 106 LQDVFEMRFAKM 117

>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DY ++I+HPMD  TV+ K+ N  Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 40  LHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKL 99
Query: 121 HEL 123
            ++
Sbjct: 100 QDV 102

>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DY ++I+HPMD  TV+ K+ N  Y   ++F  DV L+ SN  +YN PD      AR +
Sbjct: 42  LHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKL 101
Query: 121 HEL 123
            ++
Sbjct: 102 QDV 104

>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L DYC++I+HP D  T+++KL +  Y   ++F  DV L  SN  +YN PD      AR +
Sbjct: 42  LHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKL 101
Query: 121 HELAKKNF 128
            ++ +  F
Sbjct: 102 QDVFEXRF 109

>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           EL DY ++I+HPMD  TV+ K+    Y   + F  DV L+ SN  +YN PD      AR 
Sbjct: 41  ELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARK 100
Query: 120 IHELAKKNFENL 131
           + ++ +  F  +
Sbjct: 101 LQDVFEMRFAKM 112

>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           + PDY  +I+ P+D  T+  ++ NG+Y ++    KD+ L+  NA  YN P +  F+ A S
Sbjct: 41  QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 100
Query: 120 IHEL 123
           I ++
Sbjct: 101 IKKI 104

>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           + PDY  +I+ P+D  T+  ++ NG+Y ++    KD+ L+  NA  YN P +  F+ A S
Sbjct: 43  QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 102
Query: 120 IHEL 123
           I ++
Sbjct: 103 IKKI 106

>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 107
           +ELP+Y E+I  P+DF  ++ ++ N  Y +L   EKDV L+C NA  +N
Sbjct: 47  KELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 95

>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           + PDY  +I+ P+D  T+  ++ NG+Y ++    KD+ L+  NA  YN P +  F+ A S
Sbjct: 44  QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 103
Query: 120 IHEL 123
           I ++
Sbjct: 104 IKKI 107

>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 54  FKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 110
           F +  + + DY EVI+ PMD  TV  K+    Y T + F KD+ LICSNA++YN PD
Sbjct: 30  FNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYN-PD 85

>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +P Y +VI+ PMDF T+R KL++G Y  LE F  DV L+  N   +N  D+   R   ++
Sbjct: 40  VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNM 99
Query: 121 HELAKKNFEN 130
            +  +K + +
Sbjct: 100 RKYFEKKWTD 109

>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +P Y +VI+ PMDF T+R KL++G Y  LE F  DV L+  N   +N  D+   R   ++
Sbjct: 43  VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNM 102
Query: 121 HELAKKNFEN 130
            +  +K + +
Sbjct: 103 RKYFEKKWTD 112

>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           +PDY ++I +P+D  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + A+ I
Sbjct: 57  VPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 116

>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 46  YCCSSSIDFK--MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNA 103
           + C  S  F+  +D  E PDY ++I+ PMDFGTVR  L  G Y +  +F KD+ LI SNA
Sbjct: 23  FQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNA 82
Query: 104 MQY 106
             Y
Sbjct: 83  KAY 85

>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 36  DPQRLY--------QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA 87
           DP +LY        QIKS+  +      +   E PDY EVI  P+D  T+  +L +  Y 
Sbjct: 4   DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYV 63
Query: 88  TLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 123
           T + F  D+  + +N  +YN PD+ Y R A ++ + 
Sbjct: 64  TRKLFVADLQRVIANCREYNPPDSEYCRCASALEKF 99

>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           ++ EE+PDY + I+ PMD  T+  KL +  Y  +E F  D  L+ +N   YN  +T Y++
Sbjct: 38  VNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYK 97
Query: 116 QARSIHEL 123
            A  + + 
Sbjct: 98  YANRLEKF 105

>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 56  MDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113
           +DP+ L  PDY +++++PMD  T++ KL  G Y    Q+  DV+L+ +NA  YN      
Sbjct: 37  VDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYN------ 90
Query: 114 FRQARSIHELAKKNFENLRQDSD 136
            R+   +++   K  E   Q+ D
Sbjct: 91  -RKTSRVYKFCSKLAEVFEQEID 112

>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 56  MDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113
           +DP+ L  PDY +++++PMD  T++ KL  G Y    Q+  DV+L+ +NA  YN      
Sbjct: 39  VDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYN------ 92
Query: 114 FRQARSIHELAKKNFENLRQDSD 136
            R+   +++   K  E   Q+ D
Sbjct: 93  -RKTSRVYKFCSKLAEVFEQEID 114

>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           L +Y +V+++PMD GT++ K+ N  Y    +F  DV L+  N  +YN PD      AR++
Sbjct: 49  LHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTL 108
Query: 121 HELAKKNFENL 131
            ++ + +F  +
Sbjct: 109 QDVFELHFAKI 119

>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 40  LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLI 99
           L QIKS+  +      +   E PDY EVI  P+D  T+  +L +  Y T + F  D+  +
Sbjct: 12  LAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRV 71
Query: 100 CSNAMQYNAPDTIYFRQARSIHEL 123
            +N  +YN PD+ Y R A ++ + 
Sbjct: 72  IANCREYNPPDSEYCRCASALEKF 95

>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 56  MDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113
           +DP+ L  PDY ++++ PMD  T++ KL  G Y    Q+  D++L+ +NA  YN   +  
Sbjct: 42  VDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRV 101
Query: 114 FRQARSIHELAKKNFENLRQ 133
           ++    + E+ ++  + + Q
Sbjct: 102 YKYCSKLSEVFEQEIDPVMQ 121

>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D +ELP+Y E++  PM    V+  L  G Y+ +  F  D+ L+  NA  +N P  + ++
Sbjct: 238 VDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYK 297
Query: 116 QARSI 120
            A ++
Sbjct: 298 DATTL 302

>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 130

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQAR 118
           ++ PDY + I+ P+    +R KL N  Y TL+  E D+ L+  NA +YN P++  +++  
Sbjct: 51  KKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVL 110
Query: 119 SIHELAKKNFENLRQDSD 136
            + ++ +   + L +  D
Sbjct: 111 KLQQVMQAKKKELARRDD 128

>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D +ELP+Y E++  PM    V+  L  G Y+ +  F  D+ L+  NA  +N P  + ++
Sbjct: 223 VDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYK 282
Query: 116 QARSI 120
            A ++
Sbjct: 283 DATTL 287

>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 48  CSSSIDFK--MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 105
           C  S  F+  +D  E PDY ++I+ PMDF TVR  L  G Y +  +  KDV LI SN+  
Sbjct: 36  CEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95
Query: 106 Y 106
           Y
Sbjct: 96  Y 96

>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           ELPDY   I+ PMD   +R+ +    Y  ++   +D  ++ +NA  YN P+++ ++ A  
Sbjct: 50  ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALV 109
Query: 120 IHELAKKNFENLRQD 134
           +H++  +   +L  D
Sbjct: 110 LHKVLLETRRDLEGD 124

>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           ELPDY   I+ PMD   +R+ +    Y  ++   +D  ++ +NA  YN P+++ ++ A  
Sbjct: 50  ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALV 109
Query: 120 IHEL 123
           +H++
Sbjct: 110 LHKV 113

>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 36  DPQRLY--------QIKSYCCSSSIDFKMDP---EELPDYCEVIEHPMDFGTVRNKLANG 84
           DP +LY        Q+KS+   S+  F M+P    E P Y EVI  PMD  T+  +L N 
Sbjct: 12  DPDQLYSTLKSILQQVKSH--QSAWPF-MEPVKRTEAPGYYEVIRFPMDLKTMSERLKNR 68
Query: 85  AYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 123
            Y + + F  D+  + +N  +YN P++ Y++ A  + + 
Sbjct: 69  YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKF 107

>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 59  EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 112
           +  PDY +VI++P  F  ++ KL  G YA   +F KDV LI  N   YN  +++
Sbjct: 51  QNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSV 104

>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 36  DPQRLY--------QIKSYCCSSSIDFKMDP---EELPDYCEVIEHPMDFGTVRNKLANG 84
           DP +LY        Q+KS+   S+  F M+P    E P Y EVI  PMD  T+  +L N 
Sbjct: 10  DPDQLYSTLKSILQQVKSH--QSAWPF-MEPVKRTEAPGYYEVIRFPMDLKTMSERLKNR 66
Query: 85  AYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 123
            Y + + F  D+  + +N  +YN P++ Y++ A  + + 
Sbjct: 67  YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKF 105

>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 46  YCCSSSIDFKMDPEEL--PDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICS 101
           YC   S+ F+ DP  L  PDY ++I++PMD  T++ +L      Y+  E F  D  LI  
Sbjct: 94  YCHEMSLAFQ-DPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 152
Query: 102 NAMQYNAPDT 111
           N  ++N PD+
Sbjct: 153 NCAEFNEPDS 162

>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP + PDY  VI+ PMD  T+  ++    Y  L +F  D+  I  N   YN  D+ +++
Sbjct: 97  VDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 156
Query: 116 QA 117
            A
Sbjct: 157 CA 158

>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP + PDY  VI+ PMD  T+  ++    Y  L +F  D+  I  N   YN  D+ +++
Sbjct: 97  VDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 156
Query: 116 QA 117
            A
Sbjct: 157 CA 158

>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 60  ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 119
           +LPDY  +I++PMD  T++ +L N  YA   +  +D   + SN   YN P       A++
Sbjct: 44  QLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQA 103
Query: 120 IHELAKKNFENLRQD 134
           + +L  +    + Q+
Sbjct: 104 LEKLFMQKLSQMPQE 118

>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP + PDY  VI+ PMD  T+  ++    Y  L +F  D+  I  N   YN  D+ +++
Sbjct: 38  VDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTAIFDNCRYYNPSDSPFYQ 97
Query: 116 QA 117
            A
Sbjct: 98  CA 99

>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 46  YCCSSSIDFKMDPEEL--PDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICS 101
           YC   S+ F+ DP  L  PDY ++I++PMD  T++ +L      Y+  E F  D  LI  
Sbjct: 33  YCHEMSLAFQ-DPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 91
Query: 102 NAMQYNAPDT 111
           N  ++N PD+
Sbjct: 92  NCAEFNEPDS 101

>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP + PDY  VI+ PMD  T+  ++    Y  L +F  D+  I  N   YN  D+ +++
Sbjct: 38  VDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 97
Query: 116 QA 117
            A
Sbjct: 98  CA 99

>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D +ELP+Y E++  P     V+  L  G Y+ +  F  D  L+  NA  +N P  + ++
Sbjct: 188 VDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYK 247
Query: 116 QARSI 120
            A ++
Sbjct: 248 DATTL 252

>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D +ELP+Y E++  P     V+  L  G Y+ +  F  D  L+  NA  +N P  + ++
Sbjct: 182 VDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYK 241
Query: 116 QARSI 120
            A ++
Sbjct: 242 DATTL 246

>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +DP + PDY  VI+ PMD  T+  ++    Y  L +F  D+  I  N   YN  D+ +++
Sbjct: 45  VDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 104
Query: 116 QARSIHELAKKNFENLR 132
            A  +     +  +  +
Sbjct: 105 CAEVLESFFVQKLKGFK 121

>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP--DTIYFRQA 117
           LPDY ++I++PMD GT++ +L N  Y +  +  +D   + +N   YN P  D +   QA
Sbjct: 51  LPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQA 109

>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           LPDY ++I+ PMD GT++ +L N  Y    +  +D   + +N   YN P       A+++
Sbjct: 64  LPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTL 123
Query: 121 HELAKKNFENLRQDSDD 137
            ++  +   ++ Q+  +
Sbjct: 124 EKIFLQKVASMPQEEQE 140

>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 120
           LPDY ++I+ PMD GT++ +L N  Y    +  +D   + +N   YN P       A+++
Sbjct: 64  LPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTL 123
Query: 121 HELAKKNFENLRQDSDD 137
            ++  +   ++ Q+  +
Sbjct: 124 EKIFLQKVASMPQEEQE 140

>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP--DTIYFRQA 117
           LPDY ++I++PMD GT++ +L N  Y +  +  +D   + +N   YN P  D +   QA
Sbjct: 49  LPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQA 107

>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 61  LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP--DTIYFRQA 117
           LPDY ++I++PMD GT++ +L N  Y +  +  +D   + +N   YN P  D +   QA
Sbjct: 53  LPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQA 111

>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 56  MDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 115
           +D    P+Y ++I+ PMD  ++  KL  G Y T E+F  D+  +  N  +YN   + Y +
Sbjct: 41  VDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTK 100
Query: 116 QARSI 120
            + ++
Sbjct: 101 MSDNL 105

>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 55  KMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           K   ++ PDY ++I  PMD   + + + N  YA  E   +D+ L+  NA  YN   +  +
Sbjct: 55  KPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVY 114
Query: 115 RQARSIHELAKKNFENLRQDSDDNE 139
             A  + +L K+  + L    DD++
Sbjct: 115 NDAHILEKLLKEKRKELGPLPDDDD 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	602
2d9e_A	121	Peregrin; four-helix bundle, transcription activat	2e-34
2i7k_A	117	Bromodomain-containing protein 7; helix, LEFT-hand	5e-34
3rcw_A	135	Bromodomain-containing protein 1; transcription, s	1e-33
3hme_A	123	Bromodomain-containing protein 9; BRD9, bromodomai	9e-33
2grc_A	129	Probable global transcription activator SNF2L4; br	8e-31
3g0l_A	117	Hwalp4, bromodomain adjacent to zinc finger domain	1e-30
3uv4_A	158	Second bromodomain of human transcription initiat	4e-30
1e6i_A	121	Transcriptional activator GCN5; gene regulation, b	4e-30
3dai_A	130	ATPase family AAA domain-containing protein 2; anc	6e-29
3uv5_A	265	Transcription initiation factor TFIID subunit 1; t	1e-28
3uv5_A	265	Transcription initiation factor TFIID subunit 1; t	4e-22
3aad_A	292	Transcription initiation factor TFIID subunit 1; p	6e-28
3aad_A	292	Transcription initiation factor TFIID subunit 1; p	8e-22
3mb4_A	124	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	8e-28
3iu5_A	116	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	8e-28
3p1f_A	119	CREB-binding protein; structural genomics consorti	1e-27
3q2e_A	123	Bromodomain and WD repeat-containing protein 1; st	6e-27
2dat_A	123	Possible global transcription activator SNF2L2; br	1e-26
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	2e-26
3d7c_A	112	General control of amino acid synthesis protein 5;	3e-26
3k2j_A	130	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	4e-26
3ljw_A	120	Protein polybromo-1; alpha helix, alternative spli	8e-26
3jvl_A	120	Bromodomain-containing protein 4; alpha helical, N	3e-25
3nxb_A	116	CAT eye syndrome critical region protein 2; struct	4e-25
3tlp_A	150	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	8e-25
3mb3_A	135	PH-interacting protein; PHIP, pleckstrin homology	8e-25
2ouo_A	130	HUNK1 protein, bromodomain-containing protein 4; B	2e-24
3mqm_A	126	Probable histone-lysine N-methyltransferase ASH1L;	2e-24
2dkw_A	131	Hypothetical protein KIAA1240; bromodomain-like, f	3e-24
2r0y_A	311	Chromatin structure-remodeling complex protein RSC	8e-23
2r0y_A	311	Chromatin structure-remodeling complex protein RSC	1e-18
2oss_A	127	HUNK1 protein, bromodomain-containing protein 4; B	2e-22
4alg_A	154	Bromodomain-containing protein 2; signaling protei	2e-22
3fkm_X	166	Signaling protein; bromodomain, malaria, structura	4e-22
2r10_A	361	Chromatin structure-remodeling complex protein RSC	4e-22
2r10_A	361	Chromatin structure-remodeling complex protein RSC	2e-16
2yyn_A	135	Transcription intermediary factor 1-alpha; bromo d	1e-21
3iu6_A	147	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	2e-21
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	3e-21
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	3e-16
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	5e-11
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121

 Score =  125 bits (317), Expect = 2e-34
 Identities = 29/85 (34%), Positives = 44/85 (51%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
              E+PDY + I+ PMDF T++  L    Y   + FE+D  LI SN ++YNA DTI++R 
Sbjct: 33  PLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRA 92

Query: 117 ARSIHELAKKNFENLRQDSDDNEPE 141
           A  + E         R+ ++     
Sbjct: 93  AVRLREQGGAVLRQARRQAEKMGSG 117

>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117

 Score =  124 bits (313), Expect = 5e-34
 Identities = 27/83 (32%), Positives = 46/83 (55%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
                P Y  +I+HPMDF T++ K+ N  Y ++E+ + +  L+C+NAM YN P+TIY++ 
Sbjct: 34  TDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKA 93

Query: 117 ARSIHELAKKNFENLRQDSDDNE 139
           A+ +     K     R +   + 
Sbjct: 94  AKKLLHSGMKILSQERLEHHHHH 116

>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135

 Score =  124 bits (312), Expect = 1e-33
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             +E+PDY + I+HPMDF T+R +L    Y  L +FE+D  LI  N M+YNA DT+++R 
Sbjct: 39  SLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRA 98

Query: 117 ARSIHELAKKNFENLRQDSDDN--EPETKVVRRGRP 150
           A  + +         R++ D    E  + +    RP
Sbjct: 99  AVRLRDQGGVVLRQARREVDSIGLEEASGMHLPERP 134

>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123

 Score =  121 bits (305), Expect = 9e-33
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
                P Y  +I+HPMDFGT+++K+    Y ++ +F+ D  L+C NAM YN PDT+Y++ 
Sbjct: 39  TDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKL 98

Query: 117 ARSIHELAKKNFENLR 132
           A+ I     K     R
Sbjct: 99  AKKILHAGFKMMSKER 114

>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129

 Score =  115 bits (291), Expect = 8e-31
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             +ELP+Y E+I  P+DF  ++ ++ N  Y +L   EKDV L+C NA  +N   ++ +  
Sbjct: 44  SRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYED 103

Query: 117 ARSIHELAKKNFENLRQDSDDNEPET 142
           +  +  +     + + ++ D    E+
Sbjct: 104 SIVLQSVFTSVRQKIEKEDDSEGEES 129

>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117

 Score =  115 bits (289), Expect = 1e-30
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + + +P Y +VI+ PMDF T+R KL++G Y  LE F  DV L+  N   +N  D+   R 
Sbjct: 39  NLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRA 98

Query: 117 ARSIHELAKKNFENLRQDS 135
             ++ +  +K + +  + S
Sbjct: 99  GHNMRKYFEKKWTDTFKVS 117

>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158

 Score =  114 bits (288), Expect = 4e-30
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + + +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + 
Sbjct: 56  NKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKT 115

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRR 147
           A+ I  +  +      +     E +    + 
Sbjct: 116 AQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 146

>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121

 Score =  113 bits (285), Expect = 4e-30
 Identities = 24/83 (28%), Positives = 42/83 (50%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + EE+PDY + I+ PMD  T+  KL +  Y  +E F  D  L+ +N   YN  +T Y++ 
Sbjct: 39  NKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKY 98

Query: 117 ARSIHELAKKNFENLRQDSDDNE 139
           A  + +      + + + S   +
Sbjct: 99  ANRLEKFFNNKVKEIPEYSHLID 121

>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130

 Score =  110 bits (278), Expect = 6e-29
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP----DTI 112
           DP+E+PDY  VI+ PMD  +V +K+    Y T++ + +D+ LICSNA++YN      D +
Sbjct: 36  DPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRL 95

Query: 113 YFRQARSIHELAKKNFENLRQDSDDNEPETKVVRR 147
              +A ++ + A    +    +  +   E     R
Sbjct: 96  IRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 130

>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265

 Score =  114 bits (286), Expect = 1e-28
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + + +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + 
Sbjct: 163 NKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKT 222

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRR 147
           A+ I  +  +      +     E +    + 
Sbjct: 223 AQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 253

>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265

 Score = 95.4 bits (237), Expect = 4e-22
 Identities = 21/116 (18%), Positives = 43/116 (37%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + + + DY ++I  PMD  T+R  +    Y + E+F + + LI  N+  YN P     + 
Sbjct: 40  NAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQI 99

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFS 172
           ++S+ +L  +  +         E     +                 + +      S
Sbjct: 100 SQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDS 155

>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292

 Score =  112 bits (282), Expect = 6e-28
 Identities = 25/91 (27%), Positives = 47/91 (51%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + + +PDY +VI +PMD  T+R  ++   Y + E F  DV LI +N+++YN P++ Y + 
Sbjct: 196 NKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKT 255

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRR 147
           A+ I  +  +      +     E +    + 
Sbjct: 256 AQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 286

>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292

 Score = 95.1 bits (236), Expect = 8e-22
 Identities = 20/101 (19%), Positives = 40/101 (39%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           + + + DY ++I  PMD  T+R  +    Y + E+F + + LI  N+  YN P     + 
Sbjct: 73  NAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQI 132

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKK 157
           ++S+ +L  +  +         E     +            
Sbjct: 133 SQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFI 173

>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124

 Score =  107 bits (269), Expect = 8e-28
 Identities = 21/78 (26%), Positives = 41/78 (52%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
              ELPDY   I+ PMD   +R+ +    Y  ++   +D  ++ +NA  YN P+++ ++ 
Sbjct: 47  SRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKD 106

Query: 117 ARSIHELAKKNFENLRQD 134
           A  +H++  +   +L  D
Sbjct: 107 ALVLHKVLLETRRDLEGD 124

>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116

 Score =  107 bits (268), Expect = 8e-28
 Identities = 20/80 (25%), Positives = 34/80 (42%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
                PDY EV+  P+D   ++ KL    Y  +     D  L+ +NA  Y  PD+  ++ 
Sbjct: 37  KRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKA 96

Query: 117 ARSIHELAKKNFENLRQDSD 136
           A  + +L  +      Q  +
Sbjct: 97  ACKLWDLYLRTRNEFVQKGE 116

>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119

 Score =  106 bits (267), Expect = 1e-27
 Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 57  DPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           DP+   +PDY +++++PMD  T++ KL  G Y    Q+  DV+L+ +NA  YN   +  +
Sbjct: 38  DPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY 97

Query: 115 RQARSIHELAKKNFENLRQ 133
           +    + E+ ++  + + Q
Sbjct: 98  KFCSKLAEVFEQEIDPVMQ 116

>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123

 Score =  104 bits (262), Expect = 6e-27
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA-PDTIYFR 115
           D  E PDY ++I+ PMDFGTVR  L  G Y +  +F KD+ LI SNA  Y     +  + 
Sbjct: 36  DLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYS 95

Query: 116 QARSIHELAKKNFENLRQD 134
               +  L ++  + +  D
Sbjct: 96  MTLRLSALFEEKMKKISSD 114

>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score =  103 bits (259), Expect = 1e-26
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             +ELP+Y E+I  P+DF  ++ ++ N  Y +L   EKDV L+C NA  +N   +  +  
Sbjct: 45  SRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYED 104

Query: 117 ARSIHELAKKNFENLRQDSDDN 138
           +  +  +    F++ RQ    +
Sbjct: 105 SIVLQSV----FKSARQSGPSS 122

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174

 Score =  104 bits (262), Expect = 2e-26
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           DP + PDY  VI+ PMD  T+  ++    Y  L +F  D+  I  N   YN  D+ +++ 
Sbjct: 98  DPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQC 157

Query: 117 ARSIHELAKKNFENLR 132
           A  +     +  +  +
Sbjct: 158 AEVLESFFVQKLKGFK 173

>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112

 Score =  102 bits (256), Expect = 3e-26
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
              E PDY EVI  P+D  T+  +L +  Y T + F  D+  + +N  +YN PD+ Y R 
Sbjct: 33  KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRC 92

Query: 117 ARSIHELAKKNFENL 131
           A ++ +      +  
Sbjct: 93  ASALEKFFYFKLKEG 107

>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130

 Score =  102 bits (256), Expect = 4e-26
 Identities = 22/80 (27%), Positives = 43/80 (53%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             ++ PDY + I+ P+    +R KL N  Y TL+  E D+ L+  NA +YN P++  +++
Sbjct: 49  SKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKR 108

Query: 117 ARSIHELAKKNFENLRQDSD 136
              + ++ +   + L +  D
Sbjct: 109 VLKLQQVMQAKKKELARRDD 128

>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120

 Score =  101 bits (253), Expect = 8e-26
 Identities = 22/78 (28%), Positives = 39/78 (50%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
              + PDY  +I+ P+D  T+  ++ NG+Y ++    KD+ L+  NA  YN P +  F+ 
Sbjct: 40  SKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKD 99

Query: 117 ARSIHELAKKNFENLRQD 134
           A SI ++       +   
Sbjct: 100 ANSIKKIFYMKKAEIEHH 117

>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120

 Score =  100 bits (250), Expect = 3e-25
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 57  DPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           D E L   DYC++I+HPMD  T+++KL +  Y   ++F  DV L+ SN  +YN PD    
Sbjct: 38  DVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVV 97

Query: 115 RQARSIHELAKKNFENLRQDSDD 137
             AR + ++ +  F  +  + ++
Sbjct: 98  AMARKLQDVFEMRFAKMPDEPEE 120

>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116

 Score = 99.3 bits (248), Expect = 4e-25
 Identities = 19/70 (27%), Positives = 35/70 (50%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           D    P+Y ++I+ PMD  ++  KL  G Y T E+F  D+  +  N  +YN   + Y + 
Sbjct: 42  DESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKM 101

Query: 117 ARSIHELAKK 126
           + ++     +
Sbjct: 102 SDNLERCFHR 111

>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150

 Score = 99.9 bits (249), Expect = 8e-25
 Identities = 23/86 (26%), Positives = 42/86 (48%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             ++ PDY ++I  PMD   + + + N  YA  E   +D+ L+  NA  YN   +  +  
Sbjct: 57  SKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYND 116

Query: 117 ARSIHELAKKNFENLRQDSDDNEPET 142
           A  + +L K+  + L    DD++  +
Sbjct: 117 AHILEKLLKEKRKELGPLPDDDDMAS 142

>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135

 Score = 99.0 bits (247), Expect = 8e-25
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD-TIYFR 115
           D  E PDY ++I+ PMDF TVR  L  G Y +  +  KDV LI SN+  Y     +  + 
Sbjct: 47  DLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYS 106

Query: 116 QARSIHELAKKNFENLRQD 134
            +  +    +++  ++  D
Sbjct: 107 MSLRLSAFFEEHISSVLSD 125

>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 57  DPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           D E L   DYC++I+HPMD  T+++KL    Y   ++F  DV L+ SN  +YN PD    
Sbjct: 51  DVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV 110

Query: 115 RQARSIHELAKKNFENLRQD 134
             AR + ++ +  F  +  +
Sbjct: 111 AMARKLQDVFEMRFAKMPDE 130

>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             ++  DY E I  P+D  T+  ++  G Y T+E F+ D+  +  NA +Y    +   R 
Sbjct: 41  PKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRD 100

Query: 117 ARSIHELAKKNFENLRQDSDDNEPET 142
              + +             D+   ET
Sbjct: 101 VCRLRKAYYNARHEASAQIDEIVGET 126

>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 62  PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 121
            DY EVI+ PMD  TV  K+    Y T + F KD+ LICSNA++YN       +  R   
Sbjct: 38  SDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRH-- 95

Query: 122 ELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKK 157
             A    ++        E + +  +      ++   
Sbjct: 96  -RACT-LKDTAHAIIAAELDPEFNKLCEEIKESGPS 129

>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311

 Score = 98.6 bits (245), Expect = 8e-23
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           D +ELP+Y E++  PM    V+  L  G Y+ +  F  D+ L+  NA  +N P  + ++ 
Sbjct: 189 DKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKD 248

Query: 117 ARSIHELAKKNFE--------------NLRQDSDDNEPETKVVRRGRPPTKNFKKPL 159
           A ++        +               +  + D  E E  +   G  P       +
Sbjct: 249 ATTLTNYFNYLIQKEFFPELQDLNERGEINLEFDKFEFENYLAIGGGGPAAAGALAI 305

>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311

 Score = 86.3 bits (213), Expect = 1e-18
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 1/112 (0%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             +  P Y   I+ PM    ++++           F  DV L+  N   YN  D++  + 
Sbjct: 56  SRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKN 114

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERAR 168
           +  +  L +      +    +    ++V  +             +   +   
Sbjct: 115 SMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALL 166

>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 57  DPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           D     LPDY ++I+ PMD GT++ +L N  Y   ++  +D   + +N   YN P     
Sbjct: 47  DAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 106

Query: 115 RQARSIHELAKKNFENLRQD 134
             A ++ +L  +    L  +
Sbjct: 107 LMAEALEKLFLQKINELPTE 126

>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 57  DPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 114
           D  +L  PDY ++I+ PMD GT++ +L N  Y    +  +D   + +N   YN P     
Sbjct: 58  DAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIV 117

Query: 115 RQARSIHELAKKNFENLRQDSDDNEPETKVVRRGR 149
             A+++ ++  +   ++ Q+  +           +
Sbjct: 118 LMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHKK 152

>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166

 Score = 92.6 bits (230), Expect = 4e-22
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 46  YCCSSSIDFKM--DPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICS 101
                   F+   D +    PDY +VI++PM F  ++ KL  G YA   +F KDV LI  
Sbjct: 34  SKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFD 93

Query: 102 NAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGR 161
           N   YN  +++     ++I          +  ++   + +           +N K    +
Sbjct: 94  NCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNNFILKEKKINDMLKLVEEENIKWSKEK 153

Query: 162 PSLERARSDFSSD 174
                   +  ++
Sbjct: 154 EDQIEEIDELENN 166

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361

 Score = 97.2 bits (241), Expect = 4e-22
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
           D +ELP+Y E++  PM    V+  L  G Y+ +  F  D+ L+  NA  +N P  + ++ 
Sbjct: 239 DKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKD 298

Query: 117 ARSIHELAKKNFEN--------------LRQDSDDNEPETKVVRRGRPPTKNFKKPL 159
           A ++        +               +  + D  E E  +   G  P       +
Sbjct: 299 ATTLTNYFNYLIQKEFFPELQDLNERGEINLEFDKFEFENYLAIGGGGPAAAGALAI 355

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361

 Score = 80.2 bits (197), Expect = 2e-16
 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 57  DPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 116
             +  P Y   I+ PM    ++++           F  DV L+  N   YN  D++  + 
Sbjct: 106 SRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKN 164

Query: 117 ARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLE 165
           +  +  L +      +    +    ++V  +             +   +
Sbjct: 165 SMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQ 213

>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 46  YCCSSSIDFKMDP--EELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICS 101
           YC   S+ F  DP    +PDY ++I++PMD  T++ +L      Y+  E F  D  LI  
Sbjct: 33  YCHEMSLAF-QDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 91

Query: 102 NAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETK 143
           N  ++N PD+        +    ++  +NL  +    +    
Sbjct: 92  NCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPKSGPS 133

>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 7/121 (5%)

Query: 54  FKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY 113
               P   P++    + P+ F  +R  + N  Y  L+ F++ +F +   A + N  D+  
Sbjct: 34  LAEIPAVDPNF--PNKPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEI 91

Query: 114 FRQARSIHELAKKNFENLRQDSDDNEPETKVVRRGRPPTKNFKKPLGRPSLERARSDFSS 173
           +  A  + +   K  + L ++ +               TK+    + +   E+   +   
Sbjct: 92  YEDAVELQQFFIKIRDELCKNGEILLSPAL-----SYTTKHLHNDVEKERKEKLPKEIEE 146

Query: 174 D 174
           D
Sbjct: 147 D 147

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184

 Score = 90.4 bits (224), Expect = 3e-21
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 33  WNWDPQRLYQI--KSYCCSSSIDFKMD-PEELPDYCEVIEHPMDFGTVRNKLAN--GAYA 87
              D ++  ++    YC   S+ F+   P  +PDY ++I++PMD  T++ +L      Y+
Sbjct: 79  TPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYS 138

Query: 88  TLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 131
             E F  D  LI  N  ++N PD+        +    ++  +NL
Sbjct: 139 KPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207

 Score = 76.9 bits (188), Expect = 3e-16
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 32  SWNWDPQRLYQIKSYCCSSSIDF-KMDPEELPDYCEVIEHPMDFGTVRNKL---ANGAYA 87
             +        +  YC   SI+F +  P  +P+Y ++I+ PMD  TV+ KL    +  Y 
Sbjct: 80  PVDQRKCERLLLYLYCHELSIEFQEPVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQ 139

Query: 88  TLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFE 129
             + F  DV LI  N  ++N    +    A +     K + E
Sbjct: 140 IPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSE 181

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189

 Score = 61.4 bits (148), Expect = 5e-11
 Identities = 9/94 (9%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 44  KSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKL---ANGAYATLEQFEKDVFLIC 100
             +C            +     +     +D   +R +L    +  Y++ ++F +DV  + 
Sbjct: 87  ALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMF 146

Query: 101 SNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD 134
               +         +    +    +        D
Sbjct: 147 KQFNKLTEDKADV-QSIIGLQRFFETRMNEAFGD 179

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183

 Score = 60.8 bits (146), Expect = 6e-11
 Identities = 12/108 (11%), Positives = 30/108 (27%)

Query: 34  NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFE 93
            W      +++                        + P+D   V+ K+  G Y ++ +F 
Sbjct: 67  EWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFS 126

Query: 94  KDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPE 141
            D+  I   A+  +       +    +     +  E +       +  
Sbjct: 127 DDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 69/491 (14%), Positives = 131/491 (26%), Gaps = 158/491 (32%)

Query: 46  YCCSSSI-----DFK--MDPEELPDYC----------EVIEHPMD-------FGTVRNKL 81
           Y     +      F    D +++ D             +I            F T+ +K 
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 82  ANGAYATLEQ-FEKDV-FLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD-SDDN 138
                  +E+    +  FL+     +   P             +  + +   R    +DN
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQP------------SMMTRMYIEQRDRLYNDN 123

Query: 139 EPETKV-VRRGRPPTKNFKKPLGRPSLERARSDFSSDVTL--ASGAENTALTNRDLGNGT 195
           +   K  V R +P  K     L R +L   R   + +V +    G+  T +      +  
Sbjct: 124 QVFAKYNVSRLQPYLK-----L-RQALLELRP--AKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 196 PHLE--------KSGFTDSSRRFSGSWNDLYTGCLAENKLERNDEVSLSKGYSMKHGKKQ 247
              +             +S          L        +++ N         ++K     
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY------QIDPNWTSRSDHSSNIKLRIHS 229

Query: 248 VVLDENRRNTYKQFHQSL------RESSVLTTFDADKKQLMTVGLHSEHGYTR--SLARF 299
           +  +  R    K +   L      + +     F+   K L+T         TR   +  F
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---------TRFKQVTDF 280

Query: 300 AANLGPVAWKIAARRIERCL-PAGVRFGPG----------WVVENDLAPQ----RPLLLS 344
            +         AA      L    +   P                DL  +     P  L 
Sbjct: 281 LS---------AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL- 330

Query: 345 SATVGLPSSSQPSLIPENLSSASTHSTIE----LKGDKLTERPEAEDSSEKPGPSTQSSL 400
                       S+I E++      +T +    +  DKLT   E+  +  +P     +  
Sbjct: 331 ------------SIIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEP-----AEY 371

Query: 401 DGHFKKPNTSSLLVVNRFSE----PAK---------EKAEIIEGLKSQLNLVNSSMGAIN 447
              F +      L V  F      P            K++++  +     L   S+  + 
Sbjct: 372 RKMFDR------LSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSL--VE 418

Query: 448 TRPP---FQIH 455
            +P      I 
Sbjct: 419 KQPKESTISIP 429

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	602
1e6i_A	121	Transcriptional activator GCN5; gene regulation, b	99.93
3g0l_A	117	Hwalp4, bromodomain adjacent to zinc finger domain	99.93
4alg_A	154	Bromodomain-containing protein 2; signaling protei	99.92
3d7c_A	112	General control of amino acid synthesis protein 5;	99.92
2d9e_A	121	Peregrin; four-helix bundle, transcription activat	99.92
2oss_A	127	HUNK1 protein, bromodomain-containing protein 4; B	99.92
3nxb_A	116	CAT eye syndrome critical region protein 2; struct	99.92
2grc_A	129	Probable global transcription activator SNF2L4; br	99.92
3jvl_A	120	Bromodomain-containing protein 4; alpha helical, N	99.92
2dat_A	123	Possible global transcription activator SNF2L2; br	99.92
2i7k_A	117	Bromodomain-containing protein 7; helix, LEFT-hand	99.92
2ouo_A	130	HUNK1 protein, bromodomain-containing protein 4; B	99.91
3rcw_A	135	Bromodomain-containing protein 1; transcription, s	99.91
2yyn_A	135	Transcription intermediary factor 1-alpha; bromo d	99.91
3hme_A	123	Bromodomain-containing protein 9; BRD9, bromodomai	99.91
3q2e_A	123	Bromodomain and WD repeat-containing protein 1; st	99.91
3mb4_A	124	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	99.91
3mb3_A	135	PH-interacting protein; PHIP, pleckstrin homology	99.91
3iu5_A	116	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	99.91
3p1f_A	119	CREB-binding protein; structural genomics consorti	99.91
3k2j_A	130	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	99.9
3ljw_A	120	Protein polybromo-1; alpha helix, alternative spli	99.9
3fkm_X	166	Signaling protein; bromodomain, malaria, structura	99.9
3mqm_A	126	Probable histone-lysine N-methyltransferase ASH1L;	99.9
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	99.89
3tlp_A	150	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	99.89
3uv4_A	158	Second bromodomain of human transcription initiat	99.89
3dai_A	130	ATPase family AAA domain-containing protein 2; anc	99.87
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.87
3uv5_A	265	Transcription initiation factor TFIID subunit 1; t	99.85
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.85
2dkw_A	131	Hypothetical protein KIAA1240; bromodomain-like, f	99.85
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.84
3uv5_A	265	Transcription initiation factor TFIID subunit 1; t	99.84
3aad_A	292	Transcription initiation factor TFIID subunit 1; p	99.83
3aad_A	292	Transcription initiation factor TFIID subunit 1; p	99.82
2r0y_A	311	Chromatin structure-remodeling complex protein RSC	99.81
2r10_A	361	Chromatin structure-remodeling complex protein RSC	99.81
2r10_A	361	Chromatin structure-remodeling complex protein RSC	99.73
2r0y_A	311	Chromatin structure-remodeling complex protein RSC	99.73
3iu6_A	147	Protein polybromo-1; PB1, polybromo 1 isoform 1, B	99.6
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	99.38

>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1

Probab=99.93  E-value=1e-25  Score=203.33  Aligned_cols=101  Identities=24%  Similarity=0.413  Sum_probs=96.8

Q ss_pred             cCChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           33 WNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        33 ~~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      ...|..+|.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus        15 ~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~   94 (121)
T 1e6i_A           15 DAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTS   94 (121)
T ss_dssp             HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred             HHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            34577999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhC
Q 007472          113 YFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      +|++|..|++.|++.+++++.
T Consensus        95 i~~~A~~L~~~f~~~~~~~p~  115 (121)
T 1e6i_A           95 YYKYANRLEKFFNNKVKEIPE  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHHHHHHHccc
Confidence            999999999999999998854

>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A

Probab=99.93  E-value=1.5e-25  Score=200.56  Aligned_cols=99  Identities=26%  Similarity=0.412  Sum_probs=95.8

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|..|.+++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|
T Consensus        17 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~   96 (117)
T 3g0l_A           17 LCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG   96 (117)
T ss_dssp             HHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH
T ss_pred             HHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhC
Q 007472          115 RQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       115 k~Ak~L~e~fek~~ekL~~  133 (602)
                      ++|..|++.|++.|+++..
T Consensus        97 ~~A~~L~~~f~~~~~~~~~  115 (117)
T 3g0l_A           97 RAGHNMRKYFEKKWTDTFK  115 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999998754

>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A

Probab=99.92  E-value=1.4e-25  Score=210.68  Aligned_cols=102  Identities=21%  Similarity=0.360  Sum_probs=96.1

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      |..+|..|++++.+++|.+|||+.  .+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||++++.|
T Consensus        37 ~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i  116 (154)
T 4alg_A           37 HKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDI  116 (154)
T ss_dssp             HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred             HHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            346788999999999999999998  699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCCC
Q 007472          114 FRQARSIHELAKKNFENLRQDSDD  137 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~e~e~  137 (602)
                      |++|+.|++.|++.|+++..+..+
T Consensus       117 ~~~A~~L~~~f~~~~~~l~~~~~e  140 (154)
T 4alg_A          117 VLMAQTLEKIFLQKVASMPQEEQE  140 (154)
T ss_dssp             HHHHHHHHHHHHHHHTTSCSSCCB
T ss_pred             HHHHHHHHHHHHHHHHHCCchhcc
Confidence            999999999999999999866443

>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A

Probab=99.92  E-value=1.7e-25  Score=199.02  Aligned_cols=98  Identities=29%  Similarity=0.360  Sum_probs=94.5

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+|
T Consensus        11 ~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~   90 (112)
T 3d7c_A           11 TLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC   90 (112)
T ss_dssp             HHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred             HHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 007472          115 RQARSIHELAKKNFENLR  132 (602)
Q Consensus       115 k~Ak~L~e~fek~~ekL~  132 (602)
                      ++|+.|++.|++.++++.
T Consensus        91 ~~A~~L~~~f~~~~~~~~  108 (112)
T 3d7c_A           91 RCASALEKFFYFKLKEGG  108 (112)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCC
Confidence            999999999999999875

>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=2.5e-25  Score=200.98  Aligned_cols=100  Identities=31%  Similarity=0.487  Sum_probs=95.7

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|.+|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.+|
T Consensus        11 ~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~   90 (121)
T 2d9e_A           11 LLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY   90 (121)
T ss_dssp             HHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred             HHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCC
Q 007472          115 RQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       115 k~Ak~L~e~fek~~ekL~~e  134 (602)
                      ++|..|++.|++.|++++..
T Consensus        91 ~~A~~L~~~~~~~l~~~~~~  110 (121)
T 2d9e_A           91 RAAVRLREQGGAVLRQARRQ  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988753

>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...

Probab=99.92  E-value=3.5e-25  Score=201.57  Aligned_cols=99  Identities=23%  Similarity=0.359  Sum_probs=94.0

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      |..+|..|++++.+++|.+|||+.  .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++++.+
T Consensus        26 ~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i  105 (127)
T 2oss_A           26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDI  105 (127)
T ss_dssp             HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            346788999999999999999986  799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCC
Q 007472          114 FRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~e  134 (602)
                      |++|..|++.|++.|++++.+
T Consensus       106 ~~~A~~L~~~f~~~~~~lp~~  126 (127)
T 2oss_A          106 VLMAEALEKLFLQKINELPTE  126 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
Confidence            999999999999999998754

>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0

Probab=99.92  E-value=4.3e-25  Score=197.25  Aligned_cols=96  Identities=23%  Similarity=0.328  Sum_probs=92.8

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.++
T Consensus        20 ~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~   99 (116)
T 3nxb_A           20 AMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT   99 (116)
T ss_dssp             HHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 007472          115 RQARSIHELAKKNFEN  130 (602)
Q Consensus       115 k~Ak~L~e~fek~~ek  130 (602)
                      ++|..|++.|++.|.+
T Consensus       100 ~~A~~L~~~f~~~~~k  115 (116)
T 3nxb_A          100 KMSDNLERCFHRAMMK  115 (116)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998874

>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A

Probab=99.92  E-value=2.8e-25  Score=202.54  Aligned_cols=105  Identities=23%  Similarity=0.463  Sum_probs=95.0

Q ss_pred             hHHHHHHHHhCC-------CCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472           36 DPQRLYQIKSYC-------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA  108 (602)
Q Consensus        36 ~~eiL~kLk~~~-------~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~  108 (602)
                      |..+|..|+++.       .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus        16 ~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~   95 (129)
T 2grc_A           16 MKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNL   95 (129)
T ss_dssp             HHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence            567788888765       5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhCCCCCCCc
Q 007472          109 PDTIYFRQARSIHELAKKNFENLRQDSDDNEP  140 (602)
Q Consensus       109 pdS~Vyk~Ak~L~e~fek~~ekL~~e~e~~E~  140 (602)
                      +++.+|++|..|++.|++.++++..+.+.+++
T Consensus        96 ~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~~  127 (129)
T 2grc_A           96 EGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE  127 (129)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHccCCCccccc
Confidence            99999999999999999999999876554443

>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*

Probab=99.92  E-value=1.4e-25  Score=201.59  Aligned_cols=101  Identities=29%  Similarity=0.494  Sum_probs=94.3

Q ss_pred             ChHHHHHHHHhCCC---CCCCcCCCCCCC--CCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           35 WDPQRLYQIKSYCC---SSSIDFKMDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        35 ~~~eiL~kLk~~~~---A~~F~ePVDp~~--lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      +|..+|.+|.+++.   +++|.+|||+..  +||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus        13 ~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~   92 (120)
T 3jvl_A           13 CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP   92 (120)
T ss_dssp             HHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence            46688888888777   899999999987  9999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhhCCC
Q 007472          110 DTIYFRQARSIHELAKKNFENLRQDS  135 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~ekL~~e~  135 (602)
                      ++.+|++|+.|++.|++.|++++.+.
T Consensus        93 ~s~~~~~A~~L~~~f~~~~~~~p~~~  118 (120)
T 3jvl_A           93 DHEVVAMARKLQDVFEMRFAKMPDEP  118 (120)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            99999999999999999999998654

>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=5.5e-25  Score=198.96  Aligned_cols=98  Identities=24%  Similarity=0.430  Sum_probs=92.9

Q ss_pred             hHHHHHHHHhCC------CCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           36 DPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        36 ~~eiL~kLk~~~------~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      |..+|..|+++.      .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||++
T Consensus        18 ~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~   97 (123)
T 2dat_A           18 MNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE   97 (123)
T ss_dssp             HHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence            567788888875      68999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhhC
Q 007472          110 DTIYFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      ++.+|++|..|++.|++.+++++.
T Consensus        98 ~s~i~~~A~~L~~~f~~~~~~~ps  121 (123)
T 2dat_A           98 GSQIYEDSIVLQSVFKSARQSGPS  121 (123)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999998864

>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}

Probab=99.92  E-value=6e-25  Score=197.78  Aligned_cols=99  Identities=31%  Similarity=0.562  Sum_probs=94.4

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..+|..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus        13 l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~   92 (117)
T 2i7k_A           13 LNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYK   92 (117)
T ss_dssp             HHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHH
T ss_pred             HHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            55788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCC
Q 007472          116 QARSIHELAKKNFENLRQD  134 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL~~e  134 (602)
                      +|+.|++.|++.++...-+
T Consensus        93 ~A~~L~~~f~~~~~~~~~~  111 (117)
T 2i7k_A           93 AAKKLLHSGMKILSQERLE  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999876543

>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*

Probab=99.91  E-value=4.7e-25  Score=201.49  Aligned_cols=99  Identities=29%  Similarity=0.486  Sum_probs=93.5

Q ss_pred             ChHHHHHHHHhCCC---CCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           35 WDPQRLYQIKSYCC---SSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        35 ~~~eiL~kLk~~~~---A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      +|..+|.+|.+++.   +++|.+|||+.  .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus        26 ~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~  105 (130)
T 2ouo_A           26 CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP  105 (130)
T ss_dssp             HHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            47789999988764   79999999987  49999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhhC
Q 007472          110 DTIYFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      ++.+|++|..|++.|++.|++++.
T Consensus       106 ~s~i~~~A~~L~~~f~~~~~~lp~  129 (130)
T 2ouo_A          106 DHEVVAMARKLQDVFEMRFAKMPD  129 (130)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999874

>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=198.39  Aligned_cols=99  Identities=32%  Similarity=0.537  Sum_probs=95.2

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..+|..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus        18 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~   97 (135)
T 3rcw_A           18 LRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYR   97 (135)
T ss_dssp             HHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred             HHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCC
Q 007472          116 QARSIHELAKKNFENLRQD  134 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL~~e  134 (602)
                      +|..|++.|++.++.++.+
T Consensus        98 ~A~~L~~~~~~~~~~~~~~  116 (135)
T 3rcw_A           98 AAVRLRDQGGVVLRQARRE  116 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987654

>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=199.40  Aligned_cols=103  Identities=22%  Similarity=0.343  Sum_probs=96.8

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~--g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      .+|..+|..|++++.+++|.+||+. .+||||++|++||||+||++||++  +.|.++++|.+||+|||.||++||++++
T Consensus        23 ~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s  101 (135)
T 2yyn_A           23 RKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDS  101 (135)
T ss_dssp             HHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred             HHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence            3577999999999999999999998 799999999999999999999998  5899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCCCC
Q 007472          112 IYFRQARSIHELAKKNFENLRQDSDD  137 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~~ekL~~e~e~  137 (602)
                      .+|++|..|++.|++.++++..+.+-
T Consensus       102 ~i~~~A~~L~~~f~~~~~~~~~~~~~  127 (135)
T 2yyn_A          102 EVANAGIKLENYFEELLKNLYPEKRF  127 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCC
Confidence            99999999999999999999766543

>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=196.65  Aligned_cols=96  Identities=32%  Similarity=0.580  Sum_probs=92.4

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..+|..|++++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus        18 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~   97 (123)
T 3hme_A           18 LEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYK   97 (123)
T ss_dssp             HHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred             HHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 007472          116 QARSIHELAKKNFENL  131 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL  131 (602)
                      +|+.|++.|++.|++.
T Consensus        98 ~A~~L~~~~~~~~~~~  113 (123)
T 3hme_A           98 LAKKILHAGFKMMSKE  113 (123)
T ss_dssp             HHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988654

>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=196.06  Aligned_cols=101  Identities=30%  Similarity=0.427  Sum_probs=96.1

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC-CCHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIY  113 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p-dS~V  113 (602)
                      .|..+|..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.+
T Consensus        14 ~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i   93 (123)
T 3q2e_A           14 QCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKI   93 (123)
T ss_dssp             HHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHH
T ss_pred             HHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Confidence            366889999999999999999999999999999999999999999999999999999999999999999999996 8999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCC
Q 007472          114 FRQARSIHELAKKNFENLRQDS  135 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~e~  135 (602)
                      |++|..|++.|++.++++..+.
T Consensus        94 ~~~A~~L~~~f~~~~~~~~~~~  115 (123)
T 3q2e_A           94 YSMTLRLSALFEEKMKKISSDF  115 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887543

>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A

Probab=99.91  E-value=1.3e-24  Score=196.71  Aligned_cols=98  Identities=22%  Similarity=0.407  Sum_probs=91.8

Q ss_pred             hHHHHHHHHh------CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           36 DPQRLYQIKS------YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        36 ~~eiL~kLk~------~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      |.++|..|++      ++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus        20 ~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~   99 (124)
T 3mb4_A           20 LNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEP   99 (124)
T ss_dssp             HHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence            4467777777      5667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhhC
Q 007472          110 DTIYFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      ++.+|++|..|++.|++.|+++..
T Consensus       100 ~s~i~~~A~~L~~~f~~~~~~l~~  123 (124)
T 3mb4_A          100 ESLIYKDALVLHKVLLETRRDLEG  123 (124)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999864

>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=198.16  Aligned_cols=100  Identities=28%  Similarity=0.394  Sum_probs=95.5

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCC-CCHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP-DTIY  113 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~p-dS~V  113 (602)
                      .|..+|..|.+++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++ ++.|
T Consensus        25 ~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i  104 (135)
T 3mb3_A           25 QCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRI  104 (135)
T ss_dssp             HHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHH
T ss_pred             HHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999997 8999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCC
Q 007472          114 FRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~e  134 (602)
                      |++|..|++.|++.|+++..+
T Consensus       105 ~~~A~~L~~~f~~~~~~~~~~  125 (135)
T 3mb3_A          105 YSMSLRLSAFFEEHISSVLSD  125 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887543

>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=193.67  Aligned_cols=100  Identities=22%  Similarity=0.335  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHhCC------CCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcC
Q 007472           35 WDPQRLYQIKSYC------CSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA  108 (602)
Q Consensus        35 ~~~eiL~kLk~~~------~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~  108 (602)
                      .|.++|..|+++.      .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus         9 ~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   88 (116)
T 3iu5_A            9 VCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYK   88 (116)
T ss_dssp             HHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence            4667888888774      5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhCC
Q 007472          109 PDTIYFRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       109 pdS~Vyk~Ak~L~e~fek~~ekL~~e  134 (602)
                      +++.+|++|..|++.|++.++++.+.
T Consensus        89 ~~s~~~~~A~~L~~~f~~~~~~l~~~  114 (116)
T 3iu5_A           89 PDSPEYKAACKLWDLYLRTRNEFVQK  114 (116)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998764

>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A

Probab=99.91  E-value=2.4e-24  Score=193.24  Aligned_cols=98  Identities=26%  Similarity=0.447  Sum_probs=91.1

Q ss_pred             hHHHHHHHHh-CCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           36 DPQRLYQIKS-YCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        36 ~~eiL~kLk~-~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      |..+|.+|.+ ++.+++|.+|||+.  ++||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus        16 l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~   95 (119)
T 3p1f_A           16 LMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSR   95 (119)
T ss_dssp             HHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred             HHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3466777776 67999999999998  79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhC
Q 007472          113 YFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      +|++|..|++.|++.++++.+
T Consensus        96 i~~~A~~L~~~f~~~~~~~~~  116 (119)
T 3p1f_A           96 VYKFCSKLAEVFEQEIDPVMQ  116 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988753

>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}

Probab=99.90  E-value=3.9e-24  Score=195.65  Aligned_cols=91  Identities=24%  Similarity=0.474  Sum_probs=86.4

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      +..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|++.|+
T Consensus        38 ~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~  117 (130)
T 3k2j_A           38 QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQ  117 (130)
T ss_dssp             CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCC
Q 007472          126 KNFENLRQDSD  136 (602)
Q Consensus       126 k~~ekL~~e~e  136 (602)
                      +.|+++....+
T Consensus       118 ~~~~~l~~~~e  128 (130)
T 3k2j_A          118 AKKKELARRDD  128 (130)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHhccc
Confidence            99999876543

>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A

Probab=99.90  E-value=5e-24  Score=191.76  Aligned_cols=97  Identities=27%  Similarity=0.446  Sum_probs=90.2

Q ss_pred             HHHHHHHHhCCC------CCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCC
Q 007472           37 PQRLYQIKSYCC------SSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD  110 (602)
Q Consensus        37 ~eiL~kLk~~~~------A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pd  110 (602)
                      ..+|..|.++..      +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus        14 ~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~   93 (120)
T 3ljw_A           14 EQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPG   93 (120)
T ss_dssp             HHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence            355666666655      99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhC
Q 007472          111 TIYFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       111 S~Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      +.+|++|..|++.|++.|+++..
T Consensus        94 s~~~~~A~~L~~~f~~~~~~i~~  116 (120)
T 3ljw_A           94 SQVFKDANSIKKIFYMKKAEIEH  116 (120)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999998853

>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}

Probab=99.90  E-value=7.7e-24  Score=201.01  Aligned_cols=98  Identities=27%  Similarity=0.459  Sum_probs=91.1

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      .|..+|..|++++.+++|.+|||+.  .+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++++.
T Consensus        25 ~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~  104 (166)
T 3fkm_X           25 LANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSV  104 (166)
T ss_dssp             HHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSH
T ss_pred             HHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3568899999999999999999987  69999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 007472          113 YFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      ||++|+.|++.|++.|+++.
T Consensus       105 i~~~A~~L~~~f~~~l~~~~  124 (166)
T 3fkm_X          105 VAITGKNIETYFNNQLIVMG  124 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999998764

>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}

Probab=99.90  E-value=7.8e-24  Score=191.82  Aligned_cols=96  Identities=21%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             HHHHHHHhC------CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCC
Q 007472           38 QRLYQIKSY------CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT  111 (602)
Q Consensus        38 eiL~kLk~~------~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS  111 (602)
                      .++..|+++      ..+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++
T Consensus        16 ~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s   95 (126)
T 3mqm_A           16 EICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKS   95 (126)
T ss_dssp             HHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence            555555554      45899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhC
Q 007472          112 IYFRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       112 ~Vyk~Ak~L~e~fek~~ekL~~  133 (602)
                      .+|++|..|++.|++.++++..
T Consensus        96 ~~~~~A~~L~~~f~~~~~~~~~  117 (126)
T 3mqm_A           96 PVGRDVCRLRKAYYNARHEASA  117 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=99.89  E-value=9.1e-24  Score=199.76  Aligned_cols=97  Identities=23%  Similarity=0.418  Sum_probs=93.6

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      +..+|..|++++.+++|.+|||+..+|||+++|++||||+||++||+++.|.++++|.+||+|||.||++||++++.+|+
T Consensus        77 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~  156 (174)
T 2ri7_A           77 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ  156 (174)
T ss_dssp             HHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 007472          116 QARSIHELAKKNFENLR  132 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL~  132 (602)
                      +|+.|++.|++.+++++
T Consensus       157 ~A~~L~~~f~~~~~~~~  173 (174)
T 2ri7_A          157 CAEVLESFFVQKLKGFK  173 (174)
T ss_dssp             HHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999998875

>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}

Probab=99.89  E-value=4.1e-23  Score=192.23  Aligned_cols=92  Identities=26%  Similarity=0.398  Sum_probs=85.5

Q ss_pred             CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           46 YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        46 ~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      +..+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++++.||++|+.|++.|+
T Consensus        46 ~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~  125 (150)
T 3tlp_A           46 RRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLK  125 (150)
T ss_dssp             CBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence            33489999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCCC
Q 007472          126 KNFENLRQDSDD  137 (602)
Q Consensus       126 k~~ekL~~e~e~  137 (602)
                      +.|+++....++
T Consensus       126 ~~~~~l~~~pd~  137 (150)
T 3tlp_A          126 EKRKELGPLPDD  137 (150)
T ss_dssp             HHHHHHCCC---
T ss_pred             HHHHHccCCCCh
Confidence            999999765443

>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A

Probab=99.89  E-value=2.3e-23  Score=196.47  Aligned_cols=93  Identities=27%  Similarity=0.498  Sum_probs=88.8

Q ss_pred             HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472           42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH  121 (602)
Q Consensus        42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~  121 (602)
                      +++.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++++.||++|..|+
T Consensus        41 kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~  120 (158)
T 3uv4_A           41 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV  120 (158)
T ss_dssp             TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCC
Q 007472          122 ELAKKNFENLRQD  134 (602)
Q Consensus       122 e~fek~~ekL~~e  134 (602)
                      +.|++.++++...
T Consensus       121 ~~~~~~l~e~~~~  133 (158)
T 3uv4_A          121 NVCYQTLTEYDEH  133 (158)
T ss_dssp             HHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887644

>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A

Probab=99.87  E-value=2.3e-22  Score=183.39  Aligned_cols=94  Identities=28%  Similarity=0.409  Sum_probs=88.0

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH--
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY--  113 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V--  113 (602)
                      |..+|..|..++.+++|.+|||+..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+  
T Consensus        15 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~   94 (130)
T 3dai_A           15 LRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDR   94 (130)
T ss_dssp             HHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred             HHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHH
Confidence            457788999999999999999999999999999999999999999999999999999999999999999999998865  


Q ss_pred             --HHHHHHHHHHHHHHHH
Q 007472          114 --FRQARSIHELAKKNFE  129 (602)
Q Consensus       114 --yk~Ak~L~e~fek~~e  129 (602)
                        +..|..|++.+...++
T Consensus        95 ~i~~~A~~L~~~~~~~i~  112 (130)
T 3dai_A           95 LIRHRACALRDTAYAIIK  112 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence              7888999888888875

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.87  E-value=2.3e-22  Score=192.30  Aligned_cols=96  Identities=24%  Similarity=0.387  Sum_probs=91.1

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~--g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      |..+|..|++++.+++|.+||+.. +||||++|++||||+||++||++  +.|.++++|.+||+|||.||+.||++++.|
T Consensus        86 c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v  164 (184)
T 3o36_A           86 CERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEV  164 (184)
T ss_dssp             HHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            557899999999999999999965 89999999999999999999998  789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 007472          114 FRQARSIHELAKKNFENLR  132 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~  132 (602)
                      |++|+.|++.|++.++++.
T Consensus       165 ~~~a~~L~~~f~~~~~~~~  183 (184)
T 3o36_A          165 ANAGIKLENYFEELLKNLY  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999999999999998763

>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A

Probab=99.85  E-value=1.7e-21  Score=196.58  Aligned_cols=97  Identities=20%  Similarity=0.391  Sum_probs=94.0

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      |..+|..|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||++++.+|+
T Consensus        19 l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~   98 (265)
T 3uv5_A           19 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQ   98 (265)
T ss_dssp             HHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 007472          116 QARSIHELAKKNFENLR  132 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL~  132 (602)
                      +|+.|++.|++.++++.
T Consensus        99 ~A~~l~~~~~~~~~~~~  115 (265)
T 3uv5_A           99 ISQSMLDLCDEKLKEKE  115 (265)
T ss_dssp             HHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.85  E-value=2.4e-21  Score=188.78  Aligned_cols=99  Identities=22%  Similarity=0.353  Sum_probs=93.8

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhchhcC---
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYNA---  108 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~---g~Y~SveEF~~DV~LIfsNA~~YN~---  108 (602)
                      .|..+|..|++++.+++|.+||+. .+||||+||++||||+||++||++   +.|.++++|..||+|||.||++||+   
T Consensus        85 ~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s  163 (207)
T 3u5n_A           85 KCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMK  163 (207)
T ss_dssp             HHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcc
Confidence            356889999999999999999987 799999999999999999999997   7999999999999999999999999   


Q ss_pred             --------------CCCHHHHHHHHHHHHHHHHHHhhhCC
Q 007472          109 --------------PDTIYFRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       109 --------------pdS~Vyk~Ak~L~e~fek~~ekL~~e  134 (602)
                                    +++.++++|.+|+..|++.|+++..+
T Consensus       164 ~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~  203 (207)
T 3u5n_A          164 VVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD  203 (207)
T ss_dssp             HHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence                          99999999999999999999998755

>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=179.39  Aligned_cols=90  Identities=29%  Similarity=0.397  Sum_probs=84.2

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCH--
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI--  112 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~--  112 (602)
                      +|..+|..|+.++.+++|.+|     +||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++|.  
T Consensus        16 ~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~   90 (131)
T 2dkw_A           16 FLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD   90 (131)
T ss_dssp             HHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred             HHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence            366889999999999999998     8999999999999999999999999999999999999999999999999984  


Q ss_pred             --HHHHHHHHHHHHHHHHH
Q 007472          113 --YFRQARSIHELAKKNFE  129 (602)
Q Consensus       113 --Vyk~Ak~L~e~fek~~e  129 (602)
                        ++.+|..|++.|...++
T Consensus        91 ~~i~~~A~~L~~~~~~~l~  109 (131)
T 2dkw_A           91 KIIRHRACTLKDTAHAIIA  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence              67899999999988874

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.84  E-value=9.9e-22  Score=189.91  Aligned_cols=97  Identities=10%  Similarity=0.116  Sum_probs=90.0

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCccccccc--CccCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHhchhcCC
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIE--HPMDFGTVRNKLANG---AYATLEQFEKDVFLICSNAMQYNAP  109 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK--~PMDLsTIkkKL~~g---~Y~SveEF~~DV~LIfsNA~~YN~p  109 (602)
                      .|..+|.+|+.|+.+++|.+||+    |+||+||+  +||||+||++||+++   .|.++++|+.||+|||+||++|| +
T Consensus        80 ~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~  154 (189)
T 2ro1_A           80 KCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-E  154 (189)
T ss_dssp             HHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-C
T ss_pred             HHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-C
Confidence            35688999999999999999998    67999998  899999999999999   99999999999999999999999 5


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhhCCCC
Q 007472          110 DTIYFRQARSIHELAKKNFENLRQDSD  136 (602)
Q Consensus       110 dS~Vyk~Ak~L~e~fek~~ekL~~e~e  136 (602)
                      ++.+|++|+.|++.|++.|+++..+.+
T Consensus       155 ~s~~~~~a~~L~~~Fe~~~~~~~~~~~  181 (189)
T 2ro1_A          155 DKADVQSIIGLQRFFETRMNEAFGDTK  181 (189)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            888899999999999999999976543

>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A

Probab=99.84  E-value=3.2e-21  Score=194.47  Aligned_cols=93  Identities=27%  Similarity=0.498  Sum_probs=89.0

Q ss_pred             HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472           42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH  121 (602)
Q Consensus        42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~  121 (602)
                      +++.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+
T Consensus       148 ~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~  227 (265)
T 3uv5_A          148 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV  227 (265)
T ss_dssp             TTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCC
Q 007472          122 ELAKKNFENLRQD  134 (602)
Q Consensus       122 e~fek~~ekL~~e  134 (602)
                      +.|++.++++...
T Consensus       228 ~~~~~~~~~~~~~  240 (265)
T 3uv5_A          228 NVCYQTLTEYDEH  240 (265)
T ss_dssp             HHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}

Probab=99.83  E-value=3.9e-21  Score=196.66  Aligned_cols=98  Identities=19%  Similarity=0.381  Sum_probs=93.2

Q ss_pred             ChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHH
Q 007472           35 WDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF  114 (602)
Q Consensus        35 ~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vy  114 (602)
                      .|..+|.+|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||+||++||++++.+|
T Consensus        51 ~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~  130 (292)
T 3aad_A           51 ILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT  130 (292)
T ss_dssp             HHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred             HHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 007472          115 RQARSIHELAKKNFENLR  132 (602)
Q Consensus       115 k~Ak~L~e~fek~~ekL~  132 (602)
                      .+|..|++.|++.++++.
T Consensus       131 ~~A~~L~~~~~~~~~~~~  148 (292)
T 3aad_A          131 QISQSMLDLCDEKLKEKE  148 (292)
T ss_dssp             HHHTHHHHTTTTTGGGSH
T ss_pred             HHHHHHHHHHHhhhhcch
Confidence            999999999988877653

>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}

Probab=99.82  E-value=9.8e-21  Score=193.74  Aligned_cols=92  Identities=27%  Similarity=0.502  Sum_probs=88.5

Q ss_pred             HHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHH
Q 007472           42 QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH  121 (602)
Q Consensus        42 kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~  121 (602)
                      +|++++.+++|.+|||...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|++|..|+
T Consensus       181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~  260 (292)
T 3aad_A          181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV  260 (292)
T ss_dssp             TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred             hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhC
Q 007472          122 ELAKKNFENLRQ  133 (602)
Q Consensus       122 e~fek~~ekL~~  133 (602)
                      +.|++.++++..
T Consensus       261 ~~~~~~~~~~~~  272 (292)
T 3aad_A          261 NVCYQTLTEYDE  272 (292)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A

Probab=99.81  E-value=1.5e-20  Score=194.14  Aligned_cols=87  Identities=24%  Similarity=0.464  Sum_probs=83.9

Q ss_pred             hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472           45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA  124 (602)
Q Consensus        45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f  124 (602)
                      .|..+++|.+|||+..+||||+||++||||+||++||+++.|.++++|..||+|||.||++||++++.||++|..|++.|
T Consensus       177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f  256 (311)
T 2r0y_A          177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF  256 (311)
T ss_dssp             SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred             CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 007472          125 KKNFENL  131 (602)
Q Consensus       125 ek~~ekL  131 (602)
                      ++.+++.
T Consensus       257 ~~~~~~~  263 (311)
T 2r0y_A          257 NYLIQKE  263 (311)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999873

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*

Probab=99.81  E-value=2.3e-20  Score=196.12  Aligned_cols=86  Identities=24%  Similarity=0.481  Sum_probs=83.6

Q ss_pred             hCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHH
Q 007472           45 SYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA  124 (602)
Q Consensus        45 ~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~f  124 (602)
                      .|..+++|.+|||+..+||||+||++||||+||++||+++.|.++++|+.||+|||.||+.||++++.||++|..|++.|
T Consensus       227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f  306 (361)
T 2r10_A          227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF  306 (361)
T ss_dssp             SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred             CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 007472          125 KKNFEN  130 (602)
Q Consensus       125 ek~~ek  130 (602)
                      ++.+++
T Consensus       307 ~~~~~~  312 (361)
T 2r10_A          307 NYLIQK  312 (361)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*

Probab=99.73  E-value=1.4e-18  Score=182.69  Aligned_cols=95  Identities=17%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             hHHHHHHHHh--CCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhchhcCCCCH
Q 007472           36 DPQRLYQIKS--YCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYNAPDTI  112 (602)
Q Consensus        36 ~~eiL~kLk~--~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~-SveEF~~DV~LIfsNA~~YN~pdS~  112 (602)
                      |..+|..+.+  ...+++|.+||+...+||||+||++||||+||++||  ..|. ++++|+.||+|||.||+.||++++.
T Consensus        83 ~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~  160 (361)
T 2r10_A           83 ISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSL  160 (361)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSH
T ss_pred             HHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCH
Confidence            3455555543  345799999999999999999999999999999998  5555 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 007472          113 YFRQARSIHELAKKNFENLR  132 (602)
Q Consensus       113 Vyk~Ak~L~e~fek~~ekL~  132 (602)
                      ||++|..|+++|++.|.+.+
T Consensus       161 i~~~a~~l~~~~~~~~~k~k  180 (361)
T 2r10_A          161 IVKNSMQVVMLIEFEVLKAK  180 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999888653

>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A

Probab=99.73  E-value=2.3e-18  Score=178.00  Aligned_cols=84  Identities=18%  Similarity=0.212  Sum_probs=78.6

Q ss_pred             CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHH
Q 007472           47 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK  125 (602)
Q Consensus        47 ~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~-SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fe  125 (602)
                      ..+++|.+||+...+||||+||++||||+||++||  ..|. ++++|..||+|||.||++||++++.||++|++|+++|+
T Consensus        46 ~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~  123 (311)
T 2r0y_A           46 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIE  123 (311)
T ss_dssp             HHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             chhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999  5565 89999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 007472          126 KNFENLR  132 (602)
Q Consensus       126 k~~ekL~  132 (602)
                      +.|.+.+
T Consensus       124 ~~~~k~k  130 (311)
T 2r0y_A          124 FEVLKAK  130 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhcc
Confidence            9988763

>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}

Probab=99.60  E-value=1.7e-15  Score=141.69  Aligned_cols=86  Identities=21%  Similarity=0.440  Sum_probs=79.4

Q ss_pred             CCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHHHHHHHHH
Q 007472           47 CCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK  126 (602)
Q Consensus        47 ~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~L~e~fek  126 (602)
                      ..+.+|.+.++..  |+||.  ++||+|.+|++||+.+.|+++++|..||.|||.||++||.++|.||.+|..|+.+|.+
T Consensus        29 ~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~  104 (147)
T 3iu6_A           29 CYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIK  104 (147)
T ss_dssp             BGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred             cchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            3567899987777  89998  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCC
Q 007472          127 NFENLRQDSD  136 (602)
Q Consensus       127 ~~ekL~~e~e  136 (602)
                      .++++..+.+
T Consensus       105 ~r~eL~~~g~  114 (147)
T 3iu6_A          105 IRDELCKNGE  114 (147)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHhhCCC
Confidence            9998866543

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=99.38  E-value=4e-13  Score=129.74  Aligned_cols=87  Identities=16%  Similarity=0.221  Sum_probs=78.1

Q ss_pred             HHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHH
Q 007472           38 QRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA  117 (602)
Q Consensus        38 eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~A  117 (602)
                      ++|..|..++.+++|.+.           .++.||||.||++||+.+.|.++++|..||.|||.||..||.+++++.+++
T Consensus        82 ~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag  150 (183)
T 3lqh_A           82 QVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKAN  150 (183)
T ss_dssp             HHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhh
Confidence            677888889999999773           259999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhCCC
Q 007472          118 RSIHELAKKNFENLRQDS  135 (602)
Q Consensus       118 k~L~e~fek~~ekL~~e~  135 (602)
                      ..|+.+|++.++++..-.
T Consensus       151 ~~l~~~f~~~l~~vfpwf  168 (183)
T 3lqh_A          151 SMVKSFFIRQMERVFPWF  168 (183)
T ss_dssp             HHHHHHHHHHHHHHCTTS
T ss_pred             hHHHHHHHHHHHHHCCCC
Confidence            999999999999987554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	602
d3dwya1	114	a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {	1e-22
d1eqfa2	128	a.29.2.1 (A:1498-1625) TAFII250 double bromodomain	1e-22
d1eqfa1	139	a.29.2.1 (A:1359-1497) TAFII250 double bromodomain	1e-21
d3d7ca1	102	a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T	2e-21
d1wuma1	118	a.29.2.1 (A:715-832) P300/CAF histone acetyltransf	1e-20
d1e6ia_	111	a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c	3e-20

>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: CREB-binding protein, CBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (226), Expect = 1e-22
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 35  WDPQRLYQ---------IKSYCCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLAN 83
           + P+ L Q          +    S      +DP+   +PDY +++++PMD  T++ KL  
Sbjct: 2   FKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT 61

Query: 84  GAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD 134
           G Y    Q+  DV+L+ +NA  YN   +  ++    + E+ ++  + + Q 
Sbjct: 62  GQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 112

>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 1e-22
 Identities = 28/118 (23%), Positives = 55/118 (46%)

Query: 29  KGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYAT 88
              S+  D     ++ +   S      ++ + +PDY +VI +PMD  T+R  ++   Y +
Sbjct: 8   VAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQS 67

Query: 89  LEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNEPETKVVR 146
            E F  DV LI +N+++YN P++ Y + A+ I  +  +      +     E +    +
Sbjct: 68  RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAK 125

>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 1e-21
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 9/131 (6%)

Query: 11  TVKRERRLFLVRIQQITTKGLSWNWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEH 70
           ++ R R   +V +  I    ++          ++    +      ++ + + DY ++I  
Sbjct: 15  SIHRRRTDPMVTLSSILESIIN---------DMRDLPNTYPFHTPVNAKVVKDYYKIITR 65

Query: 71  PMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 130
           PMD  T+R  +    Y + E+F + + LI  N+  YN P     + ++S+ +L  +  + 
Sbjct: 66  PMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE 125

Query: 131 LRQDSDDNEPE 141
                   E  
Sbjct: 126 KEDKLARLEKA 136

>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 40  LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLI 99
           L QIKS+  +      +   E PDY EVI  P+D  T+  +L +  Y T + F  D+  +
Sbjct: 11  LAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRV 70

Query: 100 CSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD 134
            +N  +YN PD+ Y R A ++    +K F    ++
Sbjct: 71  IANCREYNPPDSEYCRCASAL----EKFFYFKLKE 101

>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: P300/CAF histone acetyltransferase bromodomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 1e-20
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 35  WDPQRLY--------QIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAY 86
            DP +LY        Q+KS+  +      +   E P Y EVI  PMD  T+  +L N  Y
Sbjct: 9   RDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYY 68

Query: 87  ATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 131
            + + F  D+  + +N  +YN P++ Y++ A  + +      +  
Sbjct: 69  VSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113

>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.2 bits (208), Expect = 3e-20
 Identities = 25/97 (25%), Positives = 49/97 (50%)

Query: 40  LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLI 99
           L +++++  +      ++ EE+PDY + I+ PMD  T+  KL +  Y  +E F  D  L+
Sbjct: 12  LTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLV 71

Query: 100 CSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 136
            +N   YN  +T Y++ A  + +      + + + S 
Sbjct: 72  FNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSH 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	602
d1e6ia_	111	GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d3d7ca1	102	GCN5 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1eqfa1	139	TAFII250 double bromodomain module {Human (Homo sa	99.9
d1wuma1	118	P300/CAF histone acetyltransferase bromodomain {Hu	99.9
d1eqfa2	128	TAFII250 double bromodomain module {Human (Homo sa	99.9
d3dwya1	114	CREB-binding protein, CBP {Human (Homo sapiens) [T	99.9

>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-25  Score=196.90  Aligned_cols=101  Identities=24%  Similarity=0.421  Sum_probs=96.5

Q ss_pred             CChHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           34 NWDPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        34 ~~~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      .++..+|.+|++|+.+++|.+|||++.+|+|+++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+
T Consensus         6 ~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~i   85 (111)
T d1e6ia_           6 AAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSY   85 (111)
T ss_dssp             HHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred             HHHHHHHHHHHhCCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCC
Q 007472          114 FRQARSIHELAKKNFENLRQD  134 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~e  134 (602)
                      +++|..|++.|++.++++++-
T Consensus        86 ~~~A~~l~~~f~~~~~~ipe~  106 (111)
T d1e6ia_          86 YKYANRLEKFFNNKVKEIPEY  106 (111)
T ss_dssp             HHHHHHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999988643

>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-25  Score=192.56  Aligned_cols=95  Identities=29%  Similarity=0.402  Sum_probs=91.3

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      +..+|.+|++|+.+++|..||++..+|||+++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++|.+|+
T Consensus         7 l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~   86 (102)
T d3d7ca1           7 LKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCR   86 (102)
T ss_dssp             HHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred             HHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 007472          116 QARSIHELAKKNFEN  130 (602)
Q Consensus       116 ~Ak~L~e~fek~~ek  130 (602)
                      +|..|++.|++.+++
T Consensus        87 ~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          87 CASALEKFFYFKLKE  101 (102)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988764

>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-24  Score=195.90  Aligned_cols=98  Identities=19%  Similarity=0.390  Sum_probs=94.0

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      +..+|..|++++.+++|.+|||++.+||||++|++||||.||++||+++.|.++++|..||+|||.||+.||++++.+++
T Consensus        31 l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~  110 (139)
T d1eqfa1          31 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQ  110 (139)
T ss_dssp             HHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhC
Q 007472          116 QARSIHELAKKNFENLRQ  133 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL~~  133 (602)
                      +|..|++.|++.|+++..
T Consensus       111 ~A~~L~~~~~~~~~~~~~  128 (139)
T d1eqfa1         111 ISQSMLDLCDEKLKEKED  128 (139)
T ss_dssp             HHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999988754

>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: P300/CAF histone acetyltransferase bromodomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=192.14  Aligned_cols=97  Identities=26%  Similarity=0.387  Sum_probs=93.0

Q ss_pred             hHHHHHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHH
Q 007472           36 DPQRLYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR  115 (602)
Q Consensus        36 ~~eiL~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk  115 (602)
                      +..+|..+++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.+|+
T Consensus        18 l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~~s~~~~   97 (118)
T d1wuma1          18 LKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYK   97 (118)
T ss_dssp             HHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCTTSSHHH
T ss_pred             HHHHHHHHHhCCCcCcccCCCChhhCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 007472          116 QARSIHELAKKNFENLR  132 (602)
Q Consensus       116 ~Ak~L~e~fek~~ekL~  132 (602)
                      +|..|++.|++.++++.
T Consensus        98 ~A~~l~~~f~~~~~e~~  114 (118)
T d1wuma1          98 CANILEKFFFSKIKEAG  114 (118)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcc
Confidence            99999999999998763

>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: TAFII250 double bromodomain module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-24  Score=194.12  Aligned_cols=94  Identities=27%  Similarity=0.481  Sum_probs=89.5

Q ss_pred             HHHHHhCCCCCCCcCCCCCCCCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHHHHHHHH
Q 007472           40 LYQIKSYCCSSSIDFKMDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS  119 (602)
Q Consensus        40 L~kLk~~~~A~~F~ePVDp~~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~Vyk~Ak~  119 (602)
                      +.+++.++.||+|.+|||++.+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.++++|+.
T Consensus        19 ~~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~   98 (128)
T d1eqfa2          19 TQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQE   98 (128)
T ss_dssp             HHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCCCCChhcCCCCcccCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhC
Q 007472          120 IHELAKKNFENLRQ  133 (602)
Q Consensus       120 L~e~fek~~ekL~~  133 (602)
                      |++.|++.+.++..
T Consensus        99 L~~~~~~~l~~~~~  112 (128)
T d1eqfa2          99 IVNVCYQTLTEYDE  112 (128)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHhHH
Confidence            99999999987753

>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: CREB-binding protein, CBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-24  Score=188.26  Aligned_cols=97  Identities=26%  Similarity=0.469  Sum_probs=90.7

Q ss_pred             HHHHHHHHhC-CCCCCCcCCCCCC--CCCcccccccCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhchhcCCCCHH
Q 007472           37 PQRLYQIKSY-CCSSSIDFKMDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIY  113 (602)
Q Consensus        37 ~eiL~kLk~~-~~A~~F~ePVDp~--~lPDY~dIIK~PMDLsTIkkKL~~g~Y~SveEF~~DV~LIfsNA~~YN~pdS~V  113 (602)
                      ..+|.+|+++ +.+++|.+|||+.  ++|||+++|++||||+||++||+++.|.++++|.+||+|||+||+.||++++.+
T Consensus        12 ~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~   91 (114)
T d3dwya1          12 MPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRV   91 (114)
T ss_dssp             HHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred             HHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            4667888876 5899999999987  799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhC
Q 007472          114 FRQARSIHELAKKNFENLRQ  133 (602)
Q Consensus       114 yk~Ak~L~e~fek~~ekL~~  133 (602)
                      |++|..|++.|++.++++.+
T Consensus        92 ~~~A~~L~~~f~~~~~~i~~  111 (114)
T d3dwya1          92 YKFCSKLAEVFEQEIDPVMQ  111 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988754