Citrus Sinensis ID: 007530
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LZ19 | 635 | Pentatricopeptide repeat- | yes | no | 0.975 | 0.921 | 0.595 | 0.0 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.931 | 0.883 | 0.418 | 1e-138 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.981 | 0.823 | 0.379 | 1e-127 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.868 | 0.667 | 0.408 | 1e-126 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.958 | 0.912 | 0.404 | 1e-126 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.941 | 0.824 | 0.388 | 1e-125 | |
| Q0WSH6 | 684 | Pentatricopeptide repeat- | no | no | 0.941 | 0.826 | 0.411 | 1e-124 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.943 | 0.635 | 0.388 | 1e-124 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.938 | 0.896 | 0.393 | 1e-123 | |
| Q9LTF4 | 588 | Putative pentatricopeptid | no | no | 0.93 | 0.948 | 0.419 | 1e-123 |
| >sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/594 (59%), Positives = 452/594 (76%), Gaps = 9/594 (1%)
Query: 15 SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
S+ ++ + + + + LQ CAR A + K CH KII + L D N+L
Sbjct: 43 SYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVL 102
Query: 75 INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
IN YSKCG + AR+VFD M +R +VSWNT+IG YT N E EA+ +F+ M EG +S
Sbjct: 103 INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFS 161
Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
EFT+SSVL AC D ECK+LH ++K +D N++VGTALLD+YAKCG+I DA +VFE
Sbjct: 162 EFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFE 221
Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
SM +++ VTWSSMVAG+VQN+ YEEAL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+
Sbjct: 222 SMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 281
Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
GKQ+HAV+CK+GFGSN+F ASS VDMYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++
Sbjct: 282 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAK 341
Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
HAR EVMILFEKMQQ G+HPNE T+ S+LS C H G+VE+G+ +F LM + + PNV
Sbjct: 342 HARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVV 401
Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
HYSCM+DILGRAGL+ EAY+LI ++PFD TAS+WGSLLASCR Y+NLELAE+AA++LF +
Sbjct: 402 HYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFEL 461
Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRN 486
EP+NAGNH+LLSNIYAAN++WEE+A++RKL+RD +VKK + KSW++IK G+
Sbjct: 462 EPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESG 521
Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
HPRI EI S L+ LV + +K GYKP EH+LHDVE +K+ELL+ HSEKLAL FGLMCL
Sbjct: 522 HPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLP 581
Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
P+RIMKNLRIC DCH FMK AS R IVRD+NRFHHF++G CSC DFW
Sbjct: 582 ESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/569 (41%), Positives = 372/569 (65%), Gaps = 10/569 (1%)
Query: 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
L+ C + ++G++ HA I+ +D + N L+N Y+KCG + ARKVF++MPQR
Sbjct: 67 LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126
Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
V+W T+I Y+ + R +A+ F MLR G +P +EFT+SSV+ A AA+R QLH
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSP-NEFTLSSVIKAAAAERRGCCGHQLHG 185
Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
F +K D NV VG+ALLD+Y + GL+ DA VF+++ RN+V+W++++AG + E+
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245
Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
AL LF+ G + F+ +S+ AC+ L QGK VHA + K+G FA ++L+D
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305
Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
MYAK G + DA +F + +++VV WN++++ +++H E + FE+M++ G+ PNE +
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEIS 365
Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
++SVL+ACSH G++++G Y++LM K+ ++P +HY ++D+LGRAG ++ A I M
Sbjct: 366 FLSVLTACSHSGLLDEGWHYYELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEM 424
Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
P + TA++W +LL +CR ++N EL AA+ +F ++PD+ G H++L NIYA+ RW + A
Sbjct: 425 PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAA 484
Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
R RK +++S VKKE + SWVEI+ HP+ EI K E+++ ++K+LGY P
Sbjct: 485 RVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVP 544
Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
+T H + V+ ++ L +HSEK+AL F L+ PG I I KN+R+CGDCH+ +K AS
Sbjct: 545 DTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLAS 604
Query: 572 RIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
++ GRE IVRD NRFHHF +G+CSC D+W
Sbjct: 605 KVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/637 (37%), Positives = 380/637 (59%), Gaps = 48/637 (7%)
Query: 11 FYYKSFSSSAIAS---ASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND 67
F +S S A+AS A+ + + + L+SC G+ H I+ +G++ D
Sbjct: 80 FTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCD 139
Query: 68 TLTSNILINFYSKC-GL-----------------------------------ISGARKVF 91
T N L+N Y+K G+ I R+VF
Sbjct: 140 LYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVF 199
Query: 92 DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
+ MP++ +VS+NTII Y +G ++A+ + M P S FT+SSVL + DV
Sbjct: 200 EVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDS-FTLSSVLPIFSEYVDV 258
Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
+ K++H + ++ +D +V++G++L+D+YAK I D+ RVF + R+ ++W+S+VAG+
Sbjct: 259 IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318
Query: 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM 271
VQN Y EAL LFR+ ++ SSVI ACA LA L GKQ+H + + GFGSN+
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378
Query: 272 FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
F AS+LVDMY+KCG + A +F + + V W +I G + H E + LFE+M++
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438
Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
G+ PN+ +++VL+ACSH+G+V++ YF+ M K + + + HY+ + D+LGRAG + E
Sbjct: 439 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 498
Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
AY+ I M + T S+W +LL+SC ++NLELAE A+++F ++ +N G ++L+ N+YA+
Sbjct: 499 AYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYAS 558
Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
N RW+E+A+ R +R ++K+ + SW+E+K G R+HP + +I L+ ++E+
Sbjct: 559 NGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQ 618
Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
M+K GY +T LHDV++ K+ELL HSE+LA+ FG++ PG IR+ KN+RIC DC
Sbjct: 619 MEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDC 678
Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
H +KF S+I RE IVRD +RFHHF G+CSC D+W
Sbjct: 679 HVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/546 (40%), Positives = 340/546 (62%), Gaps = 25/546 (4%)
Query: 67 DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
D ++ N +I Y++ G I AR++FDE P + + +W ++ Y N +EA LF M
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308
Query: 127 REGKTPYSEFTVSSV----LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182
+ ++ V + DV C RNV ++ YA+
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKELFDVMPC-------------RNVSTWNTMITGYAQ 355
Query: 183 CGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242
CG IS+A +F+ MP+R+ V+W++M+AG+ Q+ EAL LF + + G N+ + SS
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415
Query: 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302
+ CA + AL GKQ+H L K G+ + F ++L+ MY KCG + +A +F + K++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 475
Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362
V WNTMI+G+SRH + FE M++ GL P++ T ++VLSACSH G+V+KG+ YF
Sbjct: 476 VSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535
Query: 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLE 422
M + + V+PN HY+CM+D+LGRAGL+ +A++L+ NMPF+ A++WG+LL + R + N E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595
Query: 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482
LAE AA ++F MEP+N+G ++LLSN+YA++ RW +V + R +RD VKK SW+EI+
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655
Query: 483 GKRN--------HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSE 534
K + HP EI++ LE+L MKK GY +T LHDVE+ K+ ++ +HSE
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSE 715
Query: 535 KLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSC 594
+LA+ +G+M + G PIR++KNLR+C DCH+ +K+ +RI GR I+RD NRFHHF +GSC
Sbjct: 716 RLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSC 775
Query: 595 SCWDFW 600
SC D+W
Sbjct: 776 SCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/589 (40%), Positives = 353/589 (59%), Gaps = 14/589 (2%)
Query: 20 AIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYS 79
A+ S ++ + +T ++ C RA G + + G N+LIN Y
Sbjct: 48 AMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYV 107
Query: 80 KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139
K L++ A ++FD+MPQR ++SW T+I +Y+ Q+A+ L + MLR+ P + +T S
Sbjct: 108 KFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP-NVYTYS 166
Query: 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199
SVL +C DV + LH +K ++ +VFV +AL+DV+AK G DA VF+ M
Sbjct: 167 SVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG 223
Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259
+ + W+S++ GF QN + AL LF+R + G Q T++SV+ AC GLA L G Q H
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 283
Query: 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319
+ K + ++ ++LVDMY KCG + DA VF+ ++E++V+ W+TMISG +++ S
Sbjct: 284 VHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQ 341
Query: 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379
E + LFE+M+ +G PN T + VL ACSH G++E G YF M K + + P HY CM
Sbjct: 342 EALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCM 401
Query: 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439
ID+LG+AG + +A L+ M + A W +LL +CR RN+ LAE AAK++ ++P++A
Sbjct: 402 IDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDA 461
Query: 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIA 491
G + LLSNIYA +++W+ V R +RD +KKE SW+E+ G +HP+I
Sbjct: 462 GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIV 521
Query: 492 EIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPI 551
E+ KL +L+ + +GY PET L D+E + ++ L HHSEKLAL FGLM L I
Sbjct: 522 EVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVI 581
Query: 552 RIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
RI KNLRICGDCH F K AS++ R ++RD R+HHF +G CSC D+W
Sbjct: 582 RIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/574 (38%), Positives = 347/574 (60%), Gaps = 9/574 (1%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
T L++C R + G H+ ++ G N+D L++ YS G ++ A K+FDE+
Sbjct: 113 TFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEI 172
Query: 95 PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
P R +V+W + YTT+GR +EA+ LF M+ G P S F V VL AC D+
Sbjct: 173 PDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQ-VLSACVHVGDLDSG 231
Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
+ + + + M +N FV T L+++YAKCG + A VF+SM E++ VTWS+M+ G+ N
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
+E + LF + L+ +QF+I + +CA L AL G+ +++ + F +N+F A
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMA 351
Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
++L+DMYAKCG + + VF ++EK++V+ N ISG +++ +F + ++ G+
Sbjct: 352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411
Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
P+ T++ +L C H G+++ G +F+ + + + V HY CM+D+ GRAG++ +AY
Sbjct: 412 PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471
Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
LI +MP A +WG+LL+ CR ++ +LAE K+L +EP NAGN++ LSNIY+ R
Sbjct: 472 LICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGR 531
Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKK 506
W+E A R ++ +KK SW+E++GK ++HP +IY+KLE L EM+
Sbjct: 532 WDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRL 591
Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
+G+ P TE DVE+ K+ +L +HSEKLA+ GL+ G IR++KNLR+CGDCH
Sbjct: 592 MGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEV 651
Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
MK S+I RE +VRD NRFH FTNGSCSC D+W
Sbjct: 652 MKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/576 (41%), Positives = 331/576 (57%), Gaps = 11/576 (1%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
T ++ A R PV GK HA + G D + Y K L ARK+FDE+
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 95 PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
P+R + +WN I + T+GR +EA+ FI R P S T + L AC+ +
Sbjct: 170 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNS-ITFCAFLNACSDWLHLNLG 228
Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
QLH L++ D +V V L+D Y KC I + +F M +N V+W S+VA +VQN
Sbjct: 229 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 288
Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
E+A +L+ R++ +E + F ISSV+ ACAG+A L G+ +HA K +F
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 348
Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM--QQAG 332
S+LVDMY KCGC+ D+ F + EKN+V N++I G++ + + LFE+M + G
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCG 408
Query: 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
PN T++S+LSACS G VE G FD M + + P HYSC++D+LGRAG++ A
Sbjct: 409 PTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERA 468
Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
Y+ I MP T S+WG+L +CR + +L +AA+ LF ++P ++GNH+LLSN +AA
Sbjct: 469 YEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAA 528
Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEM 504
RW E R+ ++ +KK SW+ +K + R+H EI + L KL EM
Sbjct: 529 GRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEM 588
Query: 505 KKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
+ GYKP+ + L+D+E+ K + HHSEKLAL FGL+ L VPIRI KNLRICGDCH
Sbjct: 589 EAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCH 648
Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
SF KF S RE IVRD NRFH F +G CSC D+W
Sbjct: 649 SFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
|
Acts as a regulatory factor of isoprenoid biosynthesis. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/587 (38%), Positives = 345/587 (58%), Gaps = 21/587 (3%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
T+ + L +C+ GK HA + G L+ ++ + L++ Y C + R+VFD
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363
Query: 94 MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
M R I WN +I Y+ N ++EA+ LFI M + T++ V+ AC
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
+ +H F +K +DR+ FV L+D+Y++ G I A R+F M +R+ VTW++M+ G+V
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 214 NELYEEALILFRRAQVL-----------GLEYNQFTISSVICACAGLAALIQGKQVHAVL 262
+E +E+AL+L + Q L L+ N T+ +++ +CA L+AL +GK++HA
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543
Query: 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVM 322
K +++ S+LVDMYAKCGC+ + VF I +KNV+ WN +I + H E +
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603
Query: 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382
L M G+ PNE T+ISV +ACSH GMV++G F +M + V P+ HY+C++D+
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 663
Query: 383 LGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441
LGRAG I EAY L+ MP D A W SLL + R + NLE+ EIAA+ L +EP+ A +
Sbjct: 664 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 723
Query: 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVE--------IKGKRNHPRIAEI 493
++LL+NIY++ W++ R+ +++ V+KE SW+E + G +HP+ ++
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783
Query: 494 YSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRI 553
LE L E M+K GY P+T LH+VE+ K+ LL HSEKLA+ FG++ PG IR+
Sbjct: 784 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 843
Query: 554 MKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
KNLR+C DCH KF S+I RE I+RD+ RFH F NG+CSC D+W
Sbjct: 844 AKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 11/574 (1%)
Query: 37 QATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96
A L +C +RA G+ HA +I T L+ FY KC + ARKV DEMP+
Sbjct: 56 DALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPE 115
Query: 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156
+ +VSW +I Y+ G EA+ +F M+R P +EFT ++VL +C + KQ
Sbjct: 116 KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKP-NEFTFATVLTSCIRASGLGLGKQ 174
Query: 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL 216
+H +K D ++FVG++LLD+YAK G I +A +FE +PER+ V+ ++++AG+ Q L
Sbjct: 175 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGL 234
Query: 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASS 276
EEAL +F R G+ N T +S++ A +GLA L GKQ H + + +S
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294
Query: 277 LVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHP 335
L+DMY+KCG + A +F + E+ + WN M+ G+S+H EV+ LF M+ + + P
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 354
Query: 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
+ T ++VLS CSH M + G + FD MV ++ P HY C++D+LGRAG I EA++
Sbjct: 355 DAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFE 414
Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
I MP TA + GSLL +CR + ++++ E ++L +EP+NAGN+++LSN+YA+ R
Sbjct: 415 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474
Query: 455 WEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKK 506
W +V R ++ V KE +SW++ + R HPR E+ +K++++ +MK+
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 534
Query: 507 LGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
GY P+ L+DV++ +K+++L+ HSEKLALTFGL+ G+PIR+ KNLRIC DCH+F
Sbjct: 535 AGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNF 594
Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
K S++ RE +RD NRFH +G CSC D+W
Sbjct: 595 AKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/570 (41%), Positives = 357/570 (62%), Gaps = 12/570 (2%)
Query: 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
L S AR R+ ++G H ++ GL+ L +N LINFYSK L +R+ F++ PQ+
Sbjct: 22 LLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSS 81
Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLH 158
+W++II + N ++ M+ P S+ CA ++ D+ + +H
Sbjct: 82 TTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDI--GRSVH 139
Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
++K D +VFVG++L+D+YAKCG I A ++F+ MP+RN VTWS M+ G+ Q E
Sbjct: 140 CLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENE 199
Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
EAL LF+ A L N ++ SSVI CA L G+Q+H + K+ F S+ F SSLV
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259
Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
+Y+KCG AY VF+ + KN+ +WN M+ +++H+ + +V+ LF++M+ +G+ PN
Sbjct: 260 SLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFI 319
Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
T+++VL+ACSH G+V++G+ YFD M K+ + P HY+ ++D+LGRAG + EA ++I N
Sbjct: 320 TFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITN 378
Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
MP D T S+WG+LL SC ++N ELA AA ++F + P ++G H+ LSN YAA+ R+E+
Sbjct: 379 MPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDA 438
Query: 459 ARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYK 510
A+ARKL+RD KKE SWVE + G+R H + EIY KL +L EEM+K GY
Sbjct: 439 AKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYI 498
Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
+T + L +V+ K + + +HSE+LA+ FGL+ PIR+MKNLR+CGDCH+ +KF
Sbjct: 499 ADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFM 558
Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
S R IVRD NRFH F +G CSC D+W
Sbjct: 559 SVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| 296084465 | 621 | unnamed protein product [Vitis vinifera] | 0.95 | 0.917 | 0.720 | 0.0 | |
| 225464414 | 594 | PREDICTED: pentatricopeptide repeat-cont | 0.95 | 0.959 | 0.720 | 0.0 | |
| 449494221 | 638 | PREDICTED: pentatricopeptide repeat-cont | 0.98 | 0.921 | 0.647 | 0.0 | |
| 147864762 | 641 | hypothetical protein VITISV_010661 [Viti | 0.903 | 0.845 | 0.725 | 0.0 | |
| 449446466 | 638 | PREDICTED: pentatricopeptide repeat-cont | 0.98 | 0.921 | 0.646 | 0.0 | |
| 356575510 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.917 | 0.636 | 0.0 | |
| 334187432 | 635 | pentatricopeptide repeat-containing prot | 0.975 | 0.921 | 0.595 | 0.0 | |
| 297806459 | 637 | binding protein [Arabidopsis lyrata subs | 0.951 | 0.896 | 0.605 | 0.0 | |
| 356534396 | 632 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.943 | 0.895 | 0.600 | 0.0 | |
| 7413540 | 864 | putative protein [Arabidopsis thaliana] | 0.908 | 0.630 | 0.617 | 0.0 |
| >gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/579 (72%), Positives = 479/579 (82%), Gaps = 9/579 (1%)
Query: 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
AT +S LQ LQS AR RA + G CHA+II +GL DT+TSN+L+N YSKCGL+ ARK
Sbjct: 44 ATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARK 103
Query: 90 VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
+FDEMP R +VSWNT++GS+T NG ++A+ LF+ M +EG T SEFTVSSV+CACAAK
Sbjct: 104 LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCACAAKC 162
Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
VFECKQLH FALK A+D NVFVGTALLDVYAKCGL+ DA+ VFE MPER++VTWSSMVA
Sbjct: 163 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 222
Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
G+VQNELYEEAL+LF RAQ +GLE+NQFTISS + ACA AALI+GKQV AV CKTG GS
Sbjct: 223 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGS 282
Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
N+F SSL+DMYAKCG + +AY VFS +EEKNVVLWN ++SGFSRH RS+E MI FEKMQ
Sbjct: 283 NIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQ 342
Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
Q G+ PN+ TYISVLSACSH+G+VEKG+ YFDLM++ HNV PNV HYSCM+DILGRAGL+
Sbjct: 343 QMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLL 402
Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
HEA D I MPFDATASMWGSLLASCR YRNLELAE+AAK LF +EP NAGNH+LLSNIY
Sbjct: 403 HEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIY 462
Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
AAN RWEEVARAR L+++S+ KKE+ KSW+EIK G+RNHPRI EIY KLE LV
Sbjct: 463 AANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 522
Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
EMKK+GYK +TEHDLHDVE+SRKQELL HHSEKLALTFG+M L G PIRIMKNLRICG
Sbjct: 523 GEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICG 582
Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
DCHSFMK AS I RE IVRD NRFHHF NG CSC +FW
Sbjct: 583 DCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/579 (72%), Positives = 479/579 (82%), Gaps = 9/579 (1%)
Query: 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
AT +S LQ LQS AR RA + G CHA+II +GL DT+TSN+L+N YSKCGL+ ARK
Sbjct: 17 ATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARK 76
Query: 90 VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
+FDEMP R +VSWNT++GS+T NG ++A+ LF+ M +EG T SEFTVSSV+CACAAK
Sbjct: 77 LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCACAAKC 135
Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
VFECKQLH FALK A+D NVFVGTALLDVYAKCGL+ DA+ VFE MPER++VTWSSMVA
Sbjct: 136 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVA 195
Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
G+VQNELYEEAL+LF RAQ +GLE+NQFTISS + ACA AALI+GKQV AV CKTG GS
Sbjct: 196 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGS 255
Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
N+F SSL+DMYAKCG + +AY VFS +EEKNVVLWN ++SGFSRH RS+E MI FEKMQ
Sbjct: 256 NIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQ 315
Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
Q G+ PN+ TYISVLSACSH+G+VEKG+ YFDLM++ HNV PNV HYSCM+DILGRAGL+
Sbjct: 316 QMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLL 375
Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
HEA D I MPFDATASMWGSLLASCR YRNLELAE+AAK LF +EP NAGNH+LLSNIY
Sbjct: 376 HEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIY 435
Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
AAN RWEEVARAR L+++S+ KKE+ KSW+EIK G+RNHPRI EIY KLE LV
Sbjct: 436 AANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 495
Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
EMKK+GYK +TEHDLHDVE+SRKQELL HHSEKLALTFG+M L G PIRIMKNLRICG
Sbjct: 496 GEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICG 555
Query: 562 DCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
DCHSFMK AS I RE IVRD NRFHHF NG CSC +FW
Sbjct: 556 DCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/602 (64%), Positives = 483/602 (80%), Gaps = 14/602 (2%)
Query: 12 YYKSFSSSAI-----ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN 66
++ S SSS+ + + NAT +S + L+ CA+ + ++GK CHA+I+ MGL
Sbjct: 38 FFASLSSSSCIVECEKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKT 97
Query: 67 DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
D LTSNILIN YSKCG + AR+VFDEMP R +VSWNT+IGS T NG E EA+ L + M
Sbjct: 98 DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157
Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
REG TP+SEFT+SSVLCACAAK + EC+ LH FA+KAAMD NVFV TALLDVYAKCGL+
Sbjct: 158 REG-TPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLM 216
Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
DA VFESMP+R+ VTWSSM AG+VQNE+YE+AL LFR+A GL+++QF +SSVICAC
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICAC 276
Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
AGLAA+I+GKQV+A+L K+GF SN+F ASSL+DMYAKCG + ++Y VF +E++NVVLWN
Sbjct: 277 AGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWN 336
Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
MISG SRHARS+EVMILFEKMQQ GL PN+ T++SVLSAC H+G+V+KG+ YFDLM K+
Sbjct: 337 AMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKE 396
Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
H++ PNVFHYSCM+D L RAG I EAYDLI +PF+A+ASMWGSLLASCR + NLELAE+
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEV 456
Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
AAK+LF +EP N+GN+LLLSN+YAAN +W+EVA+ RKL+++S+VKKE+ KSW+EIK
Sbjct: 457 AAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516
Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
G+RNHP+I EIYSKL ++++E++KLGYK ET+HDLH V +S KQELL HHSEKLA
Sbjct: 517 LFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAF 576
Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
T GL+ L P PIRIMKNLRICGDCHSFMK AS+ R+ IVRD NRFHHF NG CSC D
Sbjct: 577 TMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGD 636
Query: 599 FW 600
FW
Sbjct: 637 FW 638
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/551 (72%), Positives = 459/551 (83%), Gaps = 9/551 (1%)
Query: 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARK 89
AT +S LQ LQS AR RA + G CHA+II +GL DT+TSN+L+N YSKCGL+ ARK
Sbjct: 44 ATHVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARK 103
Query: 90 VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR 149
+FDEMP R +VSWNT++GS+T NG ++A+ LF+ M +EG SEFTVSSV+CACAAK
Sbjct: 104 LFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEG-ISCSEFTVSSVVCACAAKC 162
Query: 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVA 209
VFECKQLH FALK A+D NVFVGTALLDVYAKCGL+ DAS VFE MPER++VTWSSMVA
Sbjct: 163 CVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVA 222
Query: 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269
G+VQNELYEEAL+LF RAQ +GLE+NQFTISS + ACA AALI+GKQV AVLCKTG GS
Sbjct: 223 GYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGS 282
Query: 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
N+F SSL+DMYAKCG + +AY VFS +EEKNVVLWN M+SGFSRH RS+E MI FEKMQ
Sbjct: 283 NIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQ 342
Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
Q G+ PNE TYISVL+ACSH+G+VEKG+ YFDLM++ HNV PNV HYSCM+DILGRAGL+
Sbjct: 343 QMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLL 402
Query: 390 HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
HEA DLI MPFDATASMWGSLLASCR YRNLE AE+AAK LF +EP NAGNH+LLSNIY
Sbjct: 403 HEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIY 462
Query: 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLV 501
AAN RWEEVARAR L+++S+ KKE+ KSW+EIK G+RNHPRI EIY KLE LV
Sbjct: 463 AANNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 522
Query: 502 EEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICG 561
EMKK+GYK +TEHDLHDVE+SRKQELL HHSEKLALTFG+M L G PIRIMKNLRICG
Sbjct: 523 GEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICG 582
Query: 562 DCHSFMKFASR 572
DCHSFMK ASR
Sbjct: 583 DCHSFMKLASR 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/602 (64%), Positives = 482/602 (80%), Gaps = 14/602 (2%)
Query: 12 YYKSFSSSAI-----ASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN 66
++ S SSS+ + + NAT +S + L+ CA+ + ++GK CHA+I+ MGL
Sbjct: 38 FFASLSSSSCIVECEKPTTKDFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKT 97
Query: 67 DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126
D LTSNILIN YSKCG + AR+VFDEMP R +VSWNT+IGS T NG E EA+ L + M
Sbjct: 98 DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQ 157
Query: 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186
REG TP+SEFT+SSVLCACAAK + EC+ LH FA+KAAMD NVFV TALLDVYAKCGL+
Sbjct: 158 REG-TPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLM 216
Query: 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246
DA VFESMP+R+ VTWSSM AG+VQNE+YE+AL LFR+A GL+++QF +SSVICAC
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICAC 276
Query: 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWN 306
AGLAA+I+GKQ++A+L K+GF SN+F ASSL+DMYAKCG + ++Y VF +E++NVVLWN
Sbjct: 277 AGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWN 336
Query: 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366
MISG SRHARS+EVMILFEKMQQ GL PN+ T++SVLSAC H+G+V KG+ YFDLM K+
Sbjct: 337 AMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKE 396
Query: 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426
H++ PNVFHYSCM+D L RAG I EAYDLI +PF+A+ASMWGSLLASCR + NLELAE+
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEV 456
Query: 427 AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK---- 482
AAK+LF +EP N+GN+LLLSN+YAAN +W+EVA+ RKL+++S+VKKE+ KSW+EIK
Sbjct: 457 AAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516
Query: 483 ----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLAL 538
G+RNHP+I EIYSKL ++++E++KLGYK ET+HDLH V +S KQELL HHSEKLA
Sbjct: 517 LFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAF 576
Query: 539 TFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWD 598
T GL+ L P PIRIMKNLRICGDCHSFMK AS+ R+ IVRD NRFHHF NG CSC D
Sbjct: 577 TMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGD 636
Query: 599 FW 600
FW
Sbjct: 637 FW 638
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/577 (63%), Positives = 466/577 (80%), Gaps = 10/577 (1%)
Query: 33 LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
+S L LQ CA+ R+ + G+ CHA+II +GL D LTSN+LIN YSKC L+ ARK F+
Sbjct: 43 VSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFN 102
Query: 93 EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
EMP + +VSWNT+IG+ T N ++EA+ L I M REG TP++EFT+SSVLC CA K +
Sbjct: 103 EMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREG-TPFNEFTISSVLCNCAFKCAIL 161
Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
EC QLH F++KAA+D N FVGTALL VYAKC I DAS++FESMPE+N VTWSSM+AG+V
Sbjct: 162 ECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYV 221
Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
QN +EEAL++FR AQ++G + + F ISS + ACAGLA LI+GKQVHA+ K+GFGSN++
Sbjct: 222 QNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIY 281
Query: 273 AASSLVDMYAKCGCVVDAYFVFSGI-EEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
+SSL+DMYAKCGC+ +AY VF G+ E +++VLWN MISGF+RHAR+ E MILFEKMQQ
Sbjct: 282 VSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQR 341
Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
G P++ TY+ VL+ACSH+G+ E+G+ YFDLMV+QHN+ P+V HYSCMIDILGRAGL+H+
Sbjct: 342 GFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHK 401
Query: 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451
AYDLI MPF+AT+SMWGSLLASC+ Y N+E AEIAAK LF MEP+NAGNH+LL+NIYAA
Sbjct: 402 AYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAA 461
Query: 452 NRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEE 503
N++W+EVARARKL+R+++V+KE+ SW+EIK G+RNHP+I +IY+KL+ LV E
Sbjct: 462 NKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVE 521
Query: 504 MKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDC 563
+KKL YK +T +DLHDVE++RKQ LL HHSEKLA+TFGLMCL +PIRI+KNLRICGDC
Sbjct: 522 LKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDC 581
Query: 564 HSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
H+FMK S+ RE IVRD NRFHHF +G CSC +FW
Sbjct: 582 HTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/594 (59%), Positives = 452/594 (76%), Gaps = 9/594 (1%)
Query: 15 SFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNIL 74
S+ ++ + + + + LQ CAR A + K CH KII + L D N+L
Sbjct: 43 SYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVL 102
Query: 75 INFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS 134
IN YSKCG + AR+VFD M +R +VSWNT+IG YT N E EA+ +F+ M EG +S
Sbjct: 103 INAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFS 161
Query: 135 EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFE 194
EFT+SSVL AC D ECK+LH ++K +D N++VGTALLD+YAKCG+I DA +VFE
Sbjct: 162 EFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFE 221
Query: 195 SMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254
SM +++ VTWSSMVAG+VQN+ YEEAL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+
Sbjct: 222 SMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIE 281
Query: 255 GKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR 314
GKQ+HAV+CK+GFGSN+F ASS VDMYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++
Sbjct: 282 GKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAK 341
Query: 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374
HAR EVMILFEKMQQ G+HPNE T+ S+LS C H G+VE+G+ +F LM + + PNV
Sbjct: 342 HARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVV 401
Query: 375 HYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434
HYSCM+DILGRAGL+ EAY+LI ++PFD TAS+WGSLLASCR Y+NLELAE+AA++LF +
Sbjct: 402 HYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFEL 461
Query: 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRN 486
EP+NAGNH+LLSNIYAAN++WEE+A++RKL+RD +VKK + KSW++IK G+
Sbjct: 462 EPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESG 521
Query: 487 HPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLC 546
HPRI EI S L+ LV + +K GYKP EH+LHDVE +K+ELL+ HSEKLAL FGLMCL
Sbjct: 522 HPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLP 581
Query: 547 PGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
P+RIMKNLRIC DCH FMK AS R IVRD+NRFHHF++G CSC DFW
Sbjct: 582 ESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/580 (60%), Positives = 448/580 (77%), Gaps = 9/580 (1%)
Query: 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGAR 88
N + S LQ CAR A + K CH K + M L D SN+LIN YSKCG + AR
Sbjct: 59 NVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELAR 118
Query: 89 KVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAK 148
+VFD M +R +VSWNT+IG YT N E EA+ +F M EG +SEFT+SSVL AC A
Sbjct: 119 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEG-FKFSEFTISSVLSACGAN 177
Query: 149 RDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMV 208
D ECK+LH ++K ++D N++VGTALLD+YAKCG+I+DA +VFESM +++ VTWSSMV
Sbjct: 178 CDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMV 237
Query: 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268
AG+VQ++ YEEAL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+GKQ+HAV+ K+GFG
Sbjct: 238 AGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFG 297
Query: 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKM 328
SN+F ASS VDMYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++HAR EVMILFEKM
Sbjct: 298 SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKM 357
Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
QQ G+HPNE T+ S+LS C H G+VE+G+ +F LM + + PNV HYSCM+DILGRAGL
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 417
Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
+ EAY+LI ++PF+ TAS+WGSLLASCR +NLELAE+AAK+LF +EP+NAGNH+LLSNI
Sbjct: 418 LSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNI 477
Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKL 500
YAAN++WEE+A++RKL+RD +VKK + +SW++IK G+ +HPRI EI + L+ L
Sbjct: 478 YAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNL 537
Query: 501 VEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRIC 560
V E++K GYKP EH+LHDVE +K+ELL+ HSEKLAL FGLMCL G +RIMKNLRIC
Sbjct: 538 VIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRIC 597
Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
DCH FMK AS R IVRD NRFHHF++G CSC +FW
Sbjct: 598 VDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g04780-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/583 (60%), Positives = 449/583 (77%), Gaps = 17/583 (2%)
Query: 33 LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD 92
+S L LQ CA+ + + G+ CHA+II +GL D LTS +LIN YSKC L+ RK D
Sbjct: 50 VSNLHYLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXD 109
Query: 93 EMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF 152
EM + ++ NT IG+ T N +++A+ L I M RE TP++EFT+SSVLC CA K +
Sbjct: 110 EMLVKSLILXNTRIGALTQNAEDRKALKLLIRMQRE-VTPFNEFTISSVLCNCAFKCAIL 168
Query: 153 ECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
EC QLH F++KAA+D N FV TALL VYAKC I DAS++FESMPE+N VTWSSM+AG+V
Sbjct: 169 ECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYV 228
Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
QN ++EAL+LF AQ++G + + F ISS + ACAGLA L++GKQVHA+ K+GFGSN++
Sbjct: 229 QNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIY 288
Query: 273 AASSLVDMYAKCGCVVDAYFVFSG-IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331
ASSL+DMYAKCGC+ +AY VF G +E +++VLWN MISGF+RHA + E MILFEKMQQ
Sbjct: 289 VASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQR 348
Query: 332 GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
G P++ TY+SVL+ACSH+G+ E+G+ YFDLMV+QHN+ P+V HYSCMIDILGRAGL+ +
Sbjct: 349 GFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQK 408
Query: 392 AYDLILNMPFDATASMWGS-------LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444
AYDLI M F+AT+SMWGS + ASCR Y N+E AEIAAK LF MEP+NAGNH+L
Sbjct: 409 AYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHIL 468
Query: 445 LSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSK 496
L+NIYAAN++ +EVARARKL+R+++V+KE+ SW+EIK G+RNHP+I + Y+K
Sbjct: 469 LANIYAANKKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAK 528
Query: 497 LEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKN 556
L+ LV E+KKL YK +T +DLHDVE+SRK LL HHSEKLA+TFGL+CL +PIRI+KN
Sbjct: 529 LDNLVVELKKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKN 588
Query: 557 LRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDF 599
LRICGDCH+FMK S+ A RE IVRD NRFHHF +G CSC +F
Sbjct: 589 LRICGDCHTFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana] gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/554 (61%), Positives = 431/554 (77%), Gaps = 9/554 (1%)
Query: 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
LQ CAR A + K CH KII + L D N+LIN YSKCG + AR+VFD M +R +
Sbjct: 60 LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 119
Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159
VSWNT+IG YT N E EA+ +F+ M EG +SEFT+SSVL AC D ECK+LH
Sbjct: 120 VSWNTMIGLYTRNRMESEALDIFLEMRNEG-FKFSEFTISSVLSACGVNCDALECKKLHC 178
Query: 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219
++K +D N++VGTALLD+YAKCG+I DA +VFESM +++ VTWSSMVAG+VQN+ YEE
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238
Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
AL+L+RRAQ + LE NQFT+SSVICAC+ LAALI+GKQ+HAV+CK+GFGSN+F ASS VD
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 298
Query: 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339
MYAKCG + ++Y +FS ++EKN+ LWNT+ISGF++HAR EVMILFEKMQQ G+HPNE T
Sbjct: 299 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 358
Query: 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399
+ S+LS C H G+VE+G+ +F LM + + PNV HYSCM+DILGRAGL+ EAY+LI ++
Sbjct: 359 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 418
Query: 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459
PFD TAS+WGSLLASCR Y+NLELAE+AA++LF +EP+NAGNH+LLSNIYAAN++WEE+A
Sbjct: 419 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIA 478
Query: 460 RARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511
++RKL+RD +VKK + KSW++IK G+ HPRI EI S L+ LV + +K GYKP
Sbjct: 479 KSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKP 538
Query: 512 ETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFAS 571
EH+LHDVE +K+ELL+ HSEKLAL FGLMCL P+RIMKNLRIC DCH FMK AS
Sbjct: 539 SVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAAS 598
Query: 572 RIAGRETIVRDLNR 585
R IVRD+NR
Sbjct: 599 MATRRFIIVRDVNR 612
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| TAIR|locus:2149664 | 588 | MEF1 "mitochondrial RNA editin | 0.93 | 0.948 | 0.396 | 4.1e-113 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.935 | 0.890 | 0.394 | 4.9e-108 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.711 | 0.543 | 0.396 | 5.7e-107 | |
| TAIR|locus:2130389 | 684 | LOI1 "lovastatin insensitive 1 | 0.941 | 0.826 | 0.394 | 1.2e-106 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.898 | 0.690 | 0.384 | 1.5e-106 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.941 | 0.824 | 0.369 | 2.5e-106 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.936 | 0.894 | 0.380 | 4e-106 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.94 | 0.647 | 0.369 | 2.2e-105 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.941 | 0.634 | 0.370 | 4.6e-105 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.941 | 0.567 | 0.387 | 7.5e-105 |
| TAIR|locus:2149664 MEF1 "mitochondrial RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 226/570 (39%), Positives = 341/570 (59%)
Query: 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI 99
L S AR R+ ++G H ++ GL+ L +N LINFYSK L +R+ F++ PQ+
Sbjct: 22 LLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSS 81
Query: 100 VSWNTIIGSYTTNGREQEAVAL-FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLH 158
+W++II + N E ++L F+ + G + + S +CA + +H
Sbjct: 82 TTWSSIISCFAQN--ELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVH 139
Query: 159 VFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218
++K D +VFVG++L+D+YAKCG I A ++F+ MP+RN VTWS M+ G+ Q E
Sbjct: 140 CLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENE 199
Query: 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV 278
EAL LF+ A L N ++ SSVI CA L G+Q+H + K+ F S+ F SSLV
Sbjct: 200 EALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLV 259
Query: 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338
+Y+KCG AY VF+ + KN+ +WN M+ +++H+ + +V+ LF++M+ +G+ PN
Sbjct: 260 SLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFI 319
Query: 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398
T+++VL+ACSH G+V++G+ YFD M K+ + P HY+ ++D+LGRAG + EA ++I N
Sbjct: 320 TFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEALEVITN 378
Query: 399 MPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458
MP D T S+WG+LL SC ++N ELA AA ++F + P ++G H+ LSN YAA+ R+E+
Sbjct: 379 MPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDA 438
Query: 459 ARARKLIRDXXXXXXXXXX--------XXXXXGKRNHPRIAEIYSXXXXXXXXXXXXGYK 510
A+ARKL+RD G+R H + EIY GY
Sbjct: 439 AKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYI 498
Query: 511 PETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFA 570
+T + L +V+ K + + +HSE+LA+ FGL+ PIR+MKNLR+CGDCH+ +KF
Sbjct: 499 ADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFM 558
Query: 571 SRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
S R IVRD NRFH F +G CSC D+W
Sbjct: 559 SVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
Identities = 227/575 (39%), Positives = 331/575 (57%)
Query: 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
+T ++ C RA G + + G N+LIN Y K L++ A ++FD+
Sbjct: 62 ATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQ 121
Query: 94 MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
MPQR ++SW T+I +Y+ Q+A+ L + MLR+ P + +T SSVL +C DV
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP-NVYTYSSVLRSCNGMSDV-- 178
Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
+ LH +K ++ +VFV +AL+DV+AK G DA VF+ M + + W+S++ GF Q
Sbjct: 179 -RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237
Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
N + AL LF+R + G Q T++SV+ AC GLA L G Q H + K + ++
Sbjct: 238 NSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLIL 295
Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
++LVDMY KCG + DA VF+ ++E++V+ W+TMISG +++ S E + LFE+M+ +G
Sbjct: 296 NNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355
Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
PN T + VL ACSH G++E G YF M K + + P HY CMID+LG+AG + +A
Sbjct: 356 KPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAV 415
Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
L+ M + A W +LL +CR RN+ LAE AAK++ ++P++AG + LLSNIYA ++
Sbjct: 416 KLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQ 475
Query: 454 RWEEVARARKLIRDXXXXXX--------XXXXXXXXXGKRNHPRIAEIYSXXXXXXXXXX 505
+W+ V R +RD G +HP+I E+
Sbjct: 476 KWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLT 535
Query: 506 XXGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
GY PET L D+E + ++ L HHSEKLAL FGLM L IRI KNLRICGDCH
Sbjct: 536 GIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHV 595
Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
F K AS++ R ++RD R+HHF +G CSC D+W
Sbjct: 596 FCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
Identities = 173/436 (39%), Positives = 263/436 (60%)
Query: 174 TALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233
TALLD Y K G ++ A +F S+ +R+ V W++M+ G+ Q+ Y EA+ LFR G
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410
Query: 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293
N +T+++++ + LA+L GKQ+H K+G ++ +++L+ MYAK G + A
Sbjct: 411 PNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRA 470
Query: 294 FSGIE-EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352
F I E++ V W +MI ++H + E + LFE M GL P+ TY+ V SAC+H G+
Sbjct: 471 FDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGL 530
Query: 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLL 412
V +G+ YFD+M ++P + HY+CM+D+ GRAGL+ EA + I MP + WGSLL
Sbjct: 531 VNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590
Query: 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDXXXXX 472
++CR ++N++L ++AA++L +EP+N+G + L+N+Y+A +WEE A+ RK ++D
Sbjct: 591 SACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKK 650
Query: 473 XXXXXXXXXXGKRN--------HPRIAEIYSXXXXXXXXXXXXGYKPETEHDLHDVEDSR 524
K + HP EIY GY P+T LHD+E+
Sbjct: 651 EQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEV 710
Query: 525 KQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDLN 584
K+++L HHSEKLA+ FGL+ +RIMKNLR+C DCH+ +KF S++ GRE IVRD
Sbjct: 711 KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTT 770
Query: 585 RFHHFTNGSCSCWDFW 600
RFHHF +G CSC D+W
Sbjct: 771 RFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2130389 LOI1 "lovastatin insensitive 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 227/576 (39%), Positives = 316/576 (54%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
T ++ A R PV GK HA + G D + Y K L ARK+FDE+
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 95 PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
P+R + +WN I + T+GR +EA+ FI R P S T + L AC+ +
Sbjct: 170 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNS-ITFCAFLNACSDWLHLNLG 228
Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
QLH L++ D +V V L+D Y KC I + +F M +N V+W S+VA +VQN
Sbjct: 229 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 288
Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
E+A +L+ R++ +E + F ISSV+ ACAG+A L G+ +HA K +F
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 348
Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
S+LVDMY KCGC+ D+ F + EKN+V N++I G++ + + LFE+M G
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCG 408
Query: 335 P--NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392
P N T++S+LSACS G VE G FD M + + P HYSC++D+LGRAG++ A
Sbjct: 409 PTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERA 468
Query: 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452
Y+ I MP T S+WG+L +CR + +L +AA+ LF ++P ++GNH+LLSN +AA
Sbjct: 469 YEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAA 528
Query: 453 RRWEEVARARKLIRDXXXXXXXXXXXXXXXGK--------RNHPRIAEIYSXXXXXXXXX 504
RW E R+ ++ + R+H EI +
Sbjct: 529 GRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEM 588
Query: 505 XXXGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCH 564
GYKP+ + L+D+E+ K + HHSEKLAL FGL+ L VPIRI KNLRICGDCH
Sbjct: 589 EAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCH 648
Query: 565 SFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
SF KF S RE IVRD NRFH F +G CSC D+W
Sbjct: 649 SFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 214/557 (38%), Positives = 334/557 (59%)
Query: 53 KVCHAKIIGMGLN-NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
K+ A+ +N D ++ N +I Y++ G I AR++FDE P + + +W ++ Y
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293
Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
N +EA LF M +E + +++L + K+L F + RNV
Sbjct: 294 NRMVEEARELFDKMPER-----NEVSWNAMLAGYVQGERMEMAKEL--FDVMPC--RNVS 344
Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
++ YA+CG IS+A +F+ MP+R+ V+W++M+AG+ Q+ EAL LF + + G
Sbjct: 345 TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREG 404
Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
N+ + SS + CA + AL GKQ+H L K G+ + F ++L+ MY KCG + +A
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
+F + K++V WNTMI+G+SRH + FE M++ GL P++ T ++VLSACSH G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
+V+KG+ YF M + + V+PN HY+CM+D+LGRAGL+ +A++L+ NMPF+ A++WG+L
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL 584
Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDXXXX 471
L + R + N ELAE AA ++F MEP+N+G ++LLSN+YA++ RW +V + R +RD
Sbjct: 585 LGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644
Query: 472 XX--------XXXXXXXXXGKRNHPRIAEIYSXXXXXXXXXXXXGYKPETEHDLHDVEDS 523
G HP EI++ GY +T LHDVE+
Sbjct: 645 KVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE 704
Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
K+ ++ +HSE+LA+ +G+M + G PIR++KNLR+C DCH+ +K+ +RI GR I+RD
Sbjct: 705 EKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDN 764
Query: 584 NRFHHFTNGSCSCWDFW 600
NRFHHF +GSCSC D+W
Sbjct: 765 NRFHHFKDGSCSCGDYW 781
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| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 212/574 (36%), Positives = 330/574 (57%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
T L++C R + G H+ ++ G N+D L++ YS G ++ A K+FDE+
Sbjct: 113 TFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEI 172
Query: 95 PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
P R +V+W + YTT+GR +EA+ LF M+ G P S F V VL AC D+
Sbjct: 173 PDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQ-VLSACVHVGDLDSG 231
Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
+ + + + M +N FV T L+++YAKCG + A VF+SM E++ VTWS+M+ G+ N
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
+E + LF + L+ +QF+I + +CA L AL G+ +++ + F +N+F A
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMA 351
Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
++L+DMYAKCG + + VF ++EK++V+ N ISG +++ +F + ++ G+
Sbjct: 352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411
Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394
P+ T++ +L C H G+++ G +F+ + + + V HY CM+D+ GRAG++ +AY
Sbjct: 412 PDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471
Query: 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454
LI +MP A +WG+LL+ CR ++ +LAE K+L +EP NAGN++ LSNIY+ R
Sbjct: 472 LICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGR 531
Query: 455 WEEVARARKLIRDXXXXXXXXXXXXXXXGK--------RNHPRIAEIYSXXXXXXXXXXX 506
W+E A R ++ GK ++HP +IY+
Sbjct: 532 WDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRL 591
Query: 507 XGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSF 566
G+ P TE DVE+ K+ +L +HSEKLA+ GL+ G IR++KNLR+CGDCH
Sbjct: 592 MGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEV 651
Query: 567 MKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
MK S+I RE +VRD NRFH FTNGSCSC D+W
Sbjct: 652 MKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
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| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
Identities = 218/573 (38%), Positives = 328/573 (57%)
Query: 38 ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97
A L +C +RA G+ HA +I T L+ FY KC + ARKV DEMP++
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116
Query: 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157
+VSW +I Y+ G EA+ +F M+R P +EFT ++VL +C + KQ+
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKP-NEFTFATVLTSCIRASGLGLGKQI 175
Query: 158 HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELY 217
H +K D ++FVG++LLD+YAK G I +A +FE +PER+ V+ ++++AG+ Q L
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLD 235
Query: 218 EEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277
EEAL +F R G+ N T +S++ A +GLA L GKQ H + + +SL
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295
Query: 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ-QAGLHPN 336
+DMY+KCG + A +F + E+ + WN M+ G+S+H EV+ LF M+ + + P+
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 337 EQTYISVLSACSHIGMVEKGKSYFDLMVK-QHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395
T ++VLS CSH M + G + FD MV ++ P HY C++D+LGRAG I EA++
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEF 415
Query: 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455
I MP TA + GSLL +CR + ++++ E ++L +EP+NAGN+++LSN+YA+ RW
Sbjct: 416 IKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRW 475
Query: 456 EEVARARKLIRDXXXXXX--------XXXXXXXXXGKRNHPRIAEIYSXXXXXXXXXXXX 507
+V R ++ R HPR E+ +
Sbjct: 476 ADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQA 535
Query: 508 GYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFM 567
GY P+ L+DV++ +K+++L+ HSEKLALTFGL+ G+PIR+ KNLRIC DCH+F
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFA 595
Query: 568 KFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
K S++ RE +RD NRFH +G CSC D+W
Sbjct: 596 KIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
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| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 215/582 (36%), Positives = 338/582 (58%)
Query: 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVF 91
+L+T+ + CA R G+ H+ + + + N L++ YSKCG + A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354
Query: 92 DEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV 151
EM R +VS+ ++I Y G EAV LF M EG +P +TV++VL CA R +
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISP-DVYTVTAVLNCCARYRLL 413
Query: 152 FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGF 211
E K++H + + + ++FV AL+D+YAKCG + +A VF M ++ ++W++++ G+
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473
Query: 212 VQNELYEEALILFRRAQVLGLEYNQF-----TISSVICACAGLAALIQGKQVHAVLCKTG 266
+N EAL LF L LE +F T++ V+ ACA L+A +G+++H + + G
Sbjct: 474 SKNCYANEALSLFN----LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNG 529
Query: 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFE 326
+ S+ A+SLVDMYAKCG ++ A+ +F I K++V W MI+G+ H E + LF
Sbjct: 530 YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFN 589
Query: 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386
+M+QAG+ +E +++S+L ACSH G+V++G +F++M + + P V HY+C++D+L R
Sbjct: 590 QMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLART 649
Query: 387 GLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446
G + +AY I NMP A++WG+LL CR + +++LAE A+++F +EP+N G ++L++
Sbjct: 650 GDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMA 709
Query: 447 NIYAANRRWEEVARARKLIRDXXXXXXXXXXXXXXXGKRN--------HPRIAEIYSXXX 498
NIYA +WE+V R RK I G+ N +P I +
Sbjct: 710 NIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLR 769
Query: 499 XXXXXXXXXGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLR 558
GY P T++ L D E+ K+E L HSEKLA+ G++ G IR+ KNLR
Sbjct: 770 KVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLR 829
Query: 559 ICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
+CGDCH KF S++ RE ++RD NRFH F +G CSC FW
Sbjct: 830 VCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
Identities = 218/588 (37%), Positives = 332/588 (56%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMG-LNNDTLTSNILINFYSKCGLISGARKVFDE 93
T+ + L +C+ GK HA + G L+ ++ + L++ Y C + R+VFD
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363
Query: 94 MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
M R I WN +I Y+ N ++EA+ LFI M + T++ V+ AC + F
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV-RSGAFS 422
Query: 154 CKQ-LHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212
K+ +H F +K +DR+ FV L+D+Y++ G I A R+F M +R+ VTW++M+ G+V
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482
Query: 213 QNELYEEALILFRRAQVL-----------GLEYNQFTISSVICACAGLAALIQGKQVHAV 261
+E +E+AL+L + Q L L+ N T+ +++ +CA L+AL +GK++HA
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542
Query: 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321
K +++ S+LVDMYAKCGC+ + VF I +KNV+ WN +I + H E
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602
Query: 322 MILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
+ L M G+ PNE T+ISV +ACSH GMV++G F +M + V P+ HY+C++D
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662
Query: 382 ILGRAGLIHEAYDLILNMPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
+LGRAG I EAY L+ MP D A W SLL + R + NLE+ EIAA+ L +EP+ A
Sbjct: 663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVAS 722
Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDXXXXXX--------XXXXXXXXXGKRNHPRIAE 492
+++LL+NIY++ W++ R+ +++ G +HP+ +
Sbjct: 723 HYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEK 782
Query: 493 IYSXXXXXXXXXXXXGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIR 552
+ GY P+T LH+VE+ K+ LL HSEKLA+ FG++ PG IR
Sbjct: 783 LSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIR 842
Query: 553 IMKNLRICGDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
+ KNLR+C DCH KF S+I RE I+RD+ RFH F NG+CSC D+W
Sbjct: 843 VAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
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| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 225/580 (38%), Positives = 332/580 (57%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
TL ++L SCA + G+ H + + +G++ + SN L+ Y++ G ++ RK+F M
Sbjct: 417 TLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSM 476
Query: 95 PQRCIVSWNTIIGSYTTNGRE-QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
P+ VSWN+IIG+ + R EAV F+N R G+ + T SSVL A ++
Sbjct: 477 PEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQK-LNRITFSSVLSAVSSLSFGEL 535
Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE-VTWSSMVAGFV 212
KQ+H ALK + AL+ Y KCG + ++F M ER + VTW+SM++G++
Sbjct: 536 GKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYI 595
Query: 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272
NEL +AL L G + F ++V+ A A +A L +G +VHA + S++
Sbjct: 596 HNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVV 655
Query: 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332
S+LVDMY+KCG + A F+ + +N WN+MISG++RH + E + LFE M+ G
Sbjct: 656 VGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG 715
Query: 333 LHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391
P + T++ VLSACSH G++E+G +F+ M + + P + H+SCM D+LGRAG + +
Sbjct: 716 QTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDK 775
Query: 392 AYDLILNMPFDATASMWGSLL-ASCR-NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449
D I MP +W ++L A CR N R EL + AA+ LF +EP+NA N++LL N+Y
Sbjct: 776 LEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMY 835
Query: 450 AANRRWEEVARARKLIRDXXXXXXXXXXXXXX--------XGKRNHPRIAEIYSXXXXXX 501
AA RWE++ +ARK ++D G ++HP IY
Sbjct: 836 AAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELN 895
Query: 502 XXXXXXGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPG-VPIRIMKNLRIC 560
GY P+T L+D+E K+E+L +HSEKLA+ F L +PIRIMKNLR+C
Sbjct: 896 RKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVC 955
Query: 561 GDCHSFMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
GDCHS K+ S+I GR+ I+RD NRFHHF +G+CSC DFW
Sbjct: 956 GDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LZ19 | PP364_ARATH | No assigned EC number | 0.5959 | 0.975 | 0.9212 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013819001 | SubName- Full=Chromosome undetermined scaffold_100, whole genome shotgun sequence; (665 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 600 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-173 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-150 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-64 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-54 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-36 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 509 bits (1311), Expect = e-173
Identities = 220/575 (38%), Positives = 338/575 (58%), Gaps = 9/575 (1%)
Query: 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93
ST A +++C ++ K + + G D N ++ + KCG++ AR++FDE
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183
Query: 94 MPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153
MP+R + SW TIIG G +EA ALF M +G T +L A A
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARA 242
Query: 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQ 213
+QLH LK + + FV AL+D+Y+KCG I DA VF+ MPE+ V W+SM+AG+
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273
+ EEAL L+ + G+ +QFT S +I + LA L KQ HA L +TGF ++ A
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
++LVD+Y+K G + DA VF + KN++ WN +I+G+ H R + + +FE+M G+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393
PN T+++VLSAC + G+ E+G F M + H + P HY+CMI++LGR GL+ EAY
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
Query: 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453
+I PF T +MW +LL +CR ++NLEL +AA++L+GM P+ N+++L N+Y ++
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542
Query: 454 RWEEVARARKLIRDSEVKKEKSKSWVEIK--------GKRNHPRIAEIYSKLEKLVEEMK 505
R E A+ + ++ + + +W+E+K G R HP+ EIY KL++L++E+
Sbjct: 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602
Query: 506 KLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHS 565
+ GY E L DV++ ++ +HSEKLA+ FGL+ P++I ++ RIC DCH
Sbjct: 603 EYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHK 662
Query: 566 FMKFASRIAGRETIVRDLNRFHHFTNGSCSCWDFW 600
+KF + + RE +VRD +RFHHF G CSC D+W
Sbjct: 663 VIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
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Score = 453 bits (1167), Expect = e-150
Identities = 214/555 (38%), Positives = 339/555 (61%), Gaps = 12/555 (2%)
Query: 52 GKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111
G+ H ++ G D N LI Y G A KVF M + VSW +I Y
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF 171
NG +A+ + M ++ +P E T++SVL ACA D+ +LH A + + V
Sbjct: 367 NGLPDKALETYALMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 172 VGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231
V AL+++Y+KC I A VF ++PE++ ++W+S++AG N EALI FR+ +L
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-MLLT 484
Query: 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291
L+ N T+ + + ACA + AL+ GK++HA + +TG G + F ++L+D+Y +CG + A+
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544
Query: 292 FVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351
F+ EK+VV WN +++G+ H + + LF +M ++G++P+E T+IS+L ACS G
Sbjct: 545 NQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSL 411
MV +G YF M +++++ PN+ HY+C++D+LGRAG + EAY+ I MP ++WG+L
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663
Query: 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471
L +CR +R++EL E+AA+ +F ++P++ G ++LL N+YA +W+EVAR RK +R++ +
Sbjct: 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723
Query: 472 KEKSKSWVEIKGK--------RNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDS 523
+ SWVE+KGK +HP+I EI + LE E+MK G + ++E S
Sbjct: 724 VDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVS 783
Query: 524 RKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETIVRDL 583
K ++ HSE+LA+ FGL+ PG+PI + KNL +C +CH+ +KF S+I RE VRD
Sbjct: 784 -KDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDT 842
Query: 584 NRFHHFTNGSCSCWD 598
+FHHF +G CSC D
Sbjct: 843 EQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (574), Expect = 6e-64
Identities = 109/323 (33%), Positives = 173/323 (53%), Gaps = 2/323 (0%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
T L++C RG+ HA ++ G D N LI Y KCG + AR VFD M
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 95 PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
P+R +SWN +I Y NG E + LF M P T++SV+ AC D
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLG 307
Query: 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN 214
+++H + +K +V V +L+ +Y G +A +VF M ++ V+W++M++G+ +N
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274
L ++AL + + + ++ TI+SV+ ACA L L G ++H + + G S + A
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH 334
++L++MY+KC C+ A VF I EK+V+ W ++I+G + R E +I F +M L
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLK 486
Query: 335 PNEQTYISVLSACSHIGMVEKGK 357
PN T I+ LSAC+ IG + GK
Sbjct: 487 PNSVTLIAALSACARIGALMCGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 2e-54
Identities = 108/352 (30%), Positives = 187/352 (53%), Gaps = 4/352 (1%)
Query: 72 NILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT 131
N +++ + + G + A VF +MP+R + SWN ++G Y G EA+ L+ ML G
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191
P +T VL C D+ +++H ++ + +V V AL+ +Y KCG + A
Sbjct: 185 P-DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 192 VFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251
VF+ MP R+ ++W++M++G+ +N E L LF + L ++ + TI+SVI AC L
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISG 311
G+++H + KTGF ++ +SL+ MY G +A VFS +E K+ V W MISG
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371
+ ++ + + + M+Q + P+E T SVLSAC+ +G ++ G +L ++ +
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS- 422
Query: 372 NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLAS-CRNYRNLE 422
V + +I++ + I +A ++ N+P S W S++A N R E
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS-WTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-36
Identities = 85/305 (27%), Positives = 156/305 (51%), Gaps = 3/305 (0%)
Query: 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170
++G+ ++A+ L + ++E + P E ++ C KR V E ++ AL + V
Sbjct: 63 SHGQLEQALKL-LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV 121
Query: 171 FVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230
+G A+L ++ + G + A VF MPER+ +W+ +V G+ + ++EAL L+ R
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181
Query: 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290
G+ + +T V+ C G+ L +G++VHA + + GF ++ ++L+ MY KCG VV A
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 291 YFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350
VF + ++ + WN MISG+ + +E + LF M++ + P+ T SV+SAC +
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410
G G+ +VK + +V + +I + G EA + M S W +
Sbjct: 302 GDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-WTA 359
Query: 411 LLASC 415
+++
Sbjct: 360 MISGY 364
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-20
Identities = 48/125 (38%), Positives = 66/125 (52%), Gaps = 23/125 (18%)
Query: 477 SWVEIK----GKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQE----- 527
W E K G +HP E +L + +K G PET+ HDV+ ++
Sbjct: 4 VWSEGKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKG 57
Query: 528 -LLIHHSEKLALTFGLMCLCPGVPIRIMKNL-RICGDCHSFMKFASRIAGRETIVRDLNR 585
LL H+EK AL +GL+ RI+K L R+CGDCH F ++ ++ GRE IVRD +R
Sbjct: 58 KLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSR 111
Query: 586 FHHFT 590
FHHF
Sbjct: 112 FHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-12
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Query: 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM 94
TL A L +CAR A + GK HA ++ G+ D N L++ Y +CG ++ A F+
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-S 549
Query: 95 PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154
++ +VSWN ++ Y +G+ AV LF M+ G P E T S+LCAC+ V +
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQG 608
Query: 155 KQL-HVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197
+ H K ++ N+ ++D+ + G +++A MP
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349
+VV +NT+I G+ + + E + LF +M++ G+ PN TY ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381
P+ TY +++ G VE+ F+ M K + PNV+ YS +ID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 303 VLWNTMISGFSRHARSVEVMI-LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361
L+ T+IS ++ + V+ M +F +M AG+ N T+ +++ C+ G V K +
Sbjct: 473 KLYTTLISTCAK-SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-----PFDATASMWGSLLASCR 416
+M + NV P+ ++ +I G++G + A+D++ M P D G+L+ +C
Sbjct: 532 IMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 417 N 417
N
Sbjct: 591 N 591
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 52/254 (20%), Positives = 105/254 (41%), Gaps = 49/254 (19%)
Query: 220 ALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279
AL + R Q GL+ + +++I CA + +V + G +N+ +L+D
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 280 MYAKCGCVVDAYFVFSGIEEKNV----VLWNTMISGFSRH---ARSVEVMI--------- 323
A+ G V A+ + + KNV V++N +IS + R+ +V+
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 324 -------------------------LFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358
+++ + + + + Y +++CS G + S
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT---ASMWGSLLASC 415
+D M K+ V P+ +S ++D+ G AG + +A++++ + + SL+ +C
Sbjct: 636 IYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 416 RNYRN----LELAE 425
N +N LEL E
Sbjct: 695 SNAKNWKKALELYE 708
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146
+V++NT+I Y G+ +EA+ LF M + G P + +T S ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP-NVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGL 333
V +N++ISG+ + + E + LF++M++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 169 NVFVGTALLDVYAKCGLISDASRVFESMPER----NEVTWSSMVAGF 211
+V L+D Y K G + +A ++F M +R N T+S ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACA 247
+ VT+++++ G+ + EEAL LF + G++ N +T S +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 67 DTLTSNILINFYSKCGLISGARKVFDEMPQRCI----VSWNTIIGSY 109
D +T N LI+ Y K G + A K+F+EM +R I +++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 100 VSWNTIIGSYTTNGREQEAVALFINMLREG 129
V++N++I Y G+ +EA+ LF M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.83 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.57 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.34 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.25 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.25 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.19 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.98 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.97 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.84 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.79 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.77 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.58 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.42 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.41 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.36 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.33 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.31 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.29 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.24 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.21 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.13 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.04 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.98 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.6 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.57 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.19 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.13 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.09 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.99 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.71 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.49 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.47 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.99 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.9 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.86 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.73 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.59 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.37 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.78 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.64 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.55 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.53 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.32 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.03 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.98 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.62 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.44 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.28 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.62 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.88 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.22 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.05 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.67 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.59 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.53 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.47 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.4 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.22 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.34 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.08 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.86 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.68 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.62 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.39 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.37 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.06 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.79 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.38 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.86 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.69 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.64 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.79 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.74 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.69 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.33 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.84 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-117 Score=967.23 Aligned_cols=572 Identities=38% Similarity=0.682 Sum_probs=564.8
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 107 (600)
+..||..+|+.++.+|++.++++.|.++|..|.+.|+.||+.+||.|+++|+++|++++|+++|++|++||+++||++|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 187 (600)
+|++.|++++|+++|++|.+.| +.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|..++|+|+++|+++|+++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 007530 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF 267 (600)
Q Consensus 188 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 267 (600)
+|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|.++|..|.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
+||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc--------ccCcchHHHHHHHHH
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHPRIAEIYSKLEK 499 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~l~~ 499 (600)
++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.|++||+++.+. ..||+.+++++.+.+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 579999999999999
Q ss_pred HHHHHHHCCCccCCcccccccchhHHhhHhhHHHHHHHHHHccccCCCCCcEEEEecccccCCchhHHHHHhhhcCCcEE
Q 007530 500 LVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAGRETI 579 (600)
Q Consensus 500 l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~ 579 (600)
+..+|++.||.||+..++|++++++++..+.+|||+||++|||+.+|+|.||||+||+|+|+|||+|+|+||++.+|+||
T Consensus 597 l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 676 (697)
T PLN03081 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIV 676 (697)
T ss_pred HHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCCCC
Q 007530 580 VRDLNRFHHFTNGSCSCWDFW 600 (600)
Q Consensus 580 ~~d~~~~h~~~~g~csc~~~w 600 (600)
|||.+|||||+||+|||+|||
T Consensus 677 ~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 677 VRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EecCCccccCCCCcccccccC
Confidence 999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-113 Score=954.29 Aligned_cols=578 Identities=37% Similarity=0.692 Sum_probs=565.4
Q ss_pred chhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC
Q 007530 17 SSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ 96 (600)
Q Consensus 17 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 96 (600)
+......|...|..||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||.||.+|+++|++++|.++|++|.+
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 34556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (600)
||+++||++|.+|++.|++++|+++|++|.+.| +.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 007530 177 LDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 256 (600)
+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCR 416 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 416 (600)
..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc--------ccCc
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK--------RNHP 488 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~--------~~~~ 488 (600)
.+++.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+|++||+++++. .+||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 6899
Q ss_pred chHHHHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHhhHHHHHHHHHHccccCCCCCcEEEEecccccCCchhHHH
Q 007530 489 RIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELLIHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMK 568 (600)
Q Consensus 489 ~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~ 568 (600)
+.++|+..|+++..+|++.||.||+..++ +.++++|+..|++|||+||++|||+++|++.||||+||+|+|+|||+|+|
T Consensus 749 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 827 (857)
T PLN03077 749 QIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827 (857)
T ss_pred chHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHH
Confidence 99999999999999999999999998877 55788999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEecCCcccccccccccCCC
Q 007530 569 FASRIAGRETIVRDLNRFHHFTNGSCSCWD 598 (600)
Q Consensus 569 ~~~~~~~~~~~~~d~~~~h~~~~g~csc~~ 598 (600)
+||++.+|+|||||.+|||||+||+|||+|
T Consensus 828 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-74 Score=645.10 Aligned_cols=560 Identities=23% Similarity=0.396 Sum_probs=498.3
Q ss_pred hhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC
Q 007530 18 SSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR 97 (600)
Q Consensus 18 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 97 (600)
......+...|.+|+..+|..++++|.+.+.++.|.++|+.+.+.|..++..++|+||.+|+++|+++.|+++|++|++|
T Consensus 71 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~ 150 (857)
T PLN03077 71 LKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER 150 (857)
T ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC
Confidence 34455666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
|+++||++|++|++.|++++|+++|++|...| +.||.+||++++++|+..+++..+.+++..+++.|+.||..++|+|+
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 337 (600)
+|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
.||+.++.+|++.|++++|.++++.|. +.|+.|+..+|++||++|+++|++++|.++|++|+ +||..+|++++.+|..
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRL 467 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999996 57999999999999999999999999999999997 6899999999999999
Q ss_pred cCChHHHHHHHHHHhc-CCCCCcchHHHHH-----------------------------------HHHHhcCChHHHHHH
Q 007530 418 YRNLELAEIAAKQLFG-MEPDNAGNHLLLS-----------------------------------NIYAANRRWEEVARA 461 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~-----------------------------------~~~~~~g~~~~a~~~ 461 (600)
.|+.++|..+|++|.+ ..|+ ..+|..++ ++|.++|++++|.++
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd-~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPN-SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCC-HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 9999999999999986 3444 44555554 555555555555555
Q ss_pred HHHhhhCCCccCCceEE-EEEcCcccCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHh---hHHHHHHH
Q 007530 462 RKLIRDSEVKKEKSKSW-VEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL---IHHSEKLA 537 (600)
Q Consensus 462 ~~~m~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l---~~h~~~~a 537 (600)
|+.| . ++. .+| .++.++..|++.+++. +++++|.+.|+.||..++..-+..+.+.+.+ ....+.+.
T Consensus 547 f~~~-~----~d~-~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 547 FNSH-E----KDV-VSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHhc-C----CCh-hhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 5554 1 222 344 5577778899988887 6888999999999988876655555444333 23455566
Q ss_pred HHHccccCCCCCcEEEEecccccCCchhHHHHHhhhcC-Cc-----EEEecCCcccccccc
Q 007530 538 LTFGLMCLCPGVPIRIMKNLRICGDCHSFMKFASRIAG-RE-----TIVRDLNRFHHFTNG 592 (600)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~-~~-----~~~~d~~~~h~~~~g 592 (600)
..+|+.+....+. ++|+.+.++|+.++|.++|.+|+- ++ .++..|+.+.+.+.|
T Consensus 617 ~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 617 EKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 6788877666666 689999999999999999999973 33 233445444444444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=537.97 Aligned_cols=484 Identities=16% Similarity=0.162 Sum_probs=428.8
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHHHHH
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP----QRCIVSWNTII 106 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li 106 (600)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHHcC
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK--AAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g 184 (600)
.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999 999999999999999999999999999999987 578999999999999999999
Q ss_pred CHHHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 185 LISDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 185 ~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|.
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999986 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
.|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999995 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH----hcC-------------------CHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILG----RAG-------------------LIHEAY 393 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~ 393 (600)
..||+.++.+|++.|++++|.++|+.|. +.|+.||..+|++|+.++. +++ ..++|.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999996 5799999999999997643 222 246799
Q ss_pred HHHHcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 394 DLILNM---PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG-MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 394 ~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..|++++.+ ..++|..++++|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcC
Confidence 999999 7899999999999877788888888888877653 334456789999998732 2368999999999999
Q ss_pred CccCCc--eEEEEEcCc-ccCcchHHHHHHHHHHHHHHHHCC-CccCCccccc
Q 007530 470 VKKEKS--KSWVEIKGK-RNHPRIAEIYSKLEKLVEEMKKLG-YKPETEHDLH 518 (600)
Q Consensus 470 ~~~~~~--~~~~~i~~~-~~~~~~~~~~~~l~~l~~~m~~~g-~~pd~~~~~~ 518 (600)
+.|+.. .+-..++.. -+-+-.+-++..+-.-+++..+.| -.|.....++
T Consensus 911 i~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~ 963 (1060)
T PLN03218 911 VVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLP 963 (1060)
T ss_pred CCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeec
Confidence 998874 221223322 222333333333333333444556 3455443333
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=536.71 Aligned_cols=479 Identities=11% Similarity=0.132 Sum_probs=426.9
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGL-NNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII 106 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 106 (600)
+..++...|..++..|.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+||.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4445677899999999999999999999999999995 578888899999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (600)
.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 187 SDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQV--LGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 187 ~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
++|.++|+.|.+ ||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999964 8999999999999999999999999999986 6799999999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
.|.+.|+.|+..+|++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999998 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCCHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM---PFDATASMWGSLLA 413 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~ 413 (600)
..+|+.++.+|++.|++++|.++|+.|. ..|+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999995 5799999999999999999999999999999988 68899999999999
Q ss_pred HHHHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHH----hcCC-------------------hHHHHHHHHHhhhC
Q 007530 414 SCRNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYA----ANRR-------------------WEEVARARKLIRDS 468 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~----~~g~-------------------~~~a~~~~~~m~~~ 468 (600)
+|.+.|+++.|.++++++.+ +.|+ ..+|..|..+|. +++. .++|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999998 4554 567888877643 2221 24566666666666
Q ss_pred CCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCccCC
Q 007530 469 EVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPET 513 (600)
Q Consensus 469 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 513 (600)
|+.|+..+....+.+....... .....+++.|...|..|+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~----~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDA----TLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccH----HHHHHHHHHhccCCCCcch
Confidence 6666654433333322211111 2223445555555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=525.66 Aligned_cols=486 Identities=22% Similarity=0.342 Sum_probs=433.6
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007530 96 QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA 175 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (600)
.++..+|+.+|.+|.+.|++++|+++|+.|...+...||..||+.++.+|++.++++.+.++|..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45778999999999999999999999999998754789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 007530 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415 (600)
Q Consensus 336 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 415 (600)
|..||+.++.+|++.|++++|.+++..|. +.|+.||..+|++||++|+++|++++|.++|++|. +||..+|++|+.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999996 56999999999999999999999999999999997 68999999999999
Q ss_pred HHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-CCCccCCceEEEEEcCcccCcchHH
Q 007530 416 RNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD-SEVKKEKSKSWVEIKGKRNHPRIAE 492 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 492 (600)
+++|+.++|.+++++|.+ ..|+ ..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+...+..+++.+.+.++.++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999999999987 5665 57999999999999999999999999986 6998888888888999999999999
Q ss_pred HHHHHHHHHHHHHHCCCccCCcccccccchhHHhhHh---hHHHHHHHHHHccccCCCCCcEEEEecccccCCchhHHHH
Q 007530 493 IYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRKQELL---IHHSEKLALTFGLMCLCPGVPIRIMKNLRICGDCHSFMKF 569 (600)
Q Consensus 493 ~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~l---~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~ 569 (600)
+.+. + ++.++.|+..++..-+..+.+.+.+ ....++ .+++.+...+..+.+++.|..+|+..+|.++
T Consensus 481 A~~~----~---~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 481 AYAM----I---RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHH----H---HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 8753 3 3468889876543323222221111 111121 2355444444555578899999999999999
Q ss_pred HhhhcCCcEEEe-------cCCcccccccccc
Q 007530 570 ASRIAGRETIVR-------DLNRFHHFTNGSC 594 (600)
Q Consensus 570 ~~~~~~~~~~~~-------d~~~~h~~~~g~c 594 (600)
+..|..+.+-.. -.+..|.|-.|..
T Consensus 551 ~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999998865321 2245677765543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=269.46 Aligned_cols=418 Identities=11% Similarity=0.060 Sum_probs=230.3
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhH
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQE 117 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 117 (600)
..+.+.|+++.|..++..+.+. .++++.++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 233444455555555555555555555554321 233344445555555555555
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 118 A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
|.+.|+++... .|.+..++..+...+...|+.++|..++..+.+.++ .+...+..++..|.+.|++++|..+++.+.
T Consensus 518 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 518 AIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555544 233444555555555555555555555555554432 234445555555555555555555555543
Q ss_pred C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHH
Q 007530 198 E---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAA 274 (600)
Q Consensus 198 ~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 274 (600)
+ .+...|..+...|.+.|++++|+..|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+...+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 2 244555555666666666666666665555432 2234445555555555666666666665555543 3345555
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG 351 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 351 (600)
..+...+.+.|++++|.++++.+.+ .+...|..+...+...|++++|+..|+++... .|+..++..+..++.+.|
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 5566666666666666666655542 24445555556666666666666666666553 344455555666666666
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 007530 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAK 429 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 429 (600)
++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ ++|...++
T Consensus 751 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 666666666666532 2334556666666666666666666666665 122345566666666666666 55666666
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 430 QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 430 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666666666666666666666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-26 Score=262.72 Aligned_cols=428 Identities=12% Similarity=0.029 Sum_probs=378.7
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHH
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTI 105 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 105 (600)
.+++..++..+...+...|+++.|.+.+..+++.. +.+...+..+...|...|++++|.+.|+.+.+ .+..+++.+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34566788889999999999999999999998764 55677888899999999999999999998753 467789999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...+.+.|++++|...|+++...+ +.+...+..+...+...|+.++|..+++.+.+.. +.+..++..+...|.+.|+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998874 6677888899999999999999999999998765 4478899999999999999
Q ss_pred HHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 186 ISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 186 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
+++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|++++|..++..+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998754 367789999999999999999999999998753 445788889999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY 340 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 340 (600)
.+.+ +.+...+..+...|.+.|++++|.+.|+.+.. |+..++..++..+.+.|+.++|.+.++++.+.. +.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 8876 56778888999999999999999999998763 556778889999999999999999999998863 4567888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNY 418 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 418 (600)
..+...|...|+.++|.+.|+.+.+.. +++...+..+...+.+.|+ .+|..+++++ ...| +..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 889999999999999999999997542 4578889999999999999 8899999876 3334 467888899999999
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
|++++|...++++++.+|.++.++..++.+|.+.|++++|.++++.|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999886
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-27 Score=189.24 Aligned_cols=102 Identities=57% Similarity=1.037 Sum_probs=89.4
Q ss_pred ceEEEE----EcCcccCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhHH--------hhHhhHHHHHHHHHHcc
Q 007530 475 SKSWVE----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDLHDVEDSRK--------QELLIHHSEKLALTFGL 542 (600)
Q Consensus 475 ~~~~~~----i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~l~~h~~~~a~~~~~ 542 (600)
+++|+. +.+-.+||+. ++..++...||.|++..+.|+++++++ +..+.+|||+||++||+
T Consensus 2 ~~~w~~~h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgl 73 (116)
T PF14432_consen 2 GCSWIEVHSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGL 73 (116)
T ss_pred CCCccceEEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcc
Confidence 567766 3455889987 456677889999999999998876655 67889999999999999
Q ss_pred ccCCCCCcEEEEecc-cccCCchhHHHHHhhhcCCcEEEecCCcccccc
Q 007530 543 MCLCPGVPIRIMKNL-RICGDCHSFMKFASRIAGRETIVRDLNRFHHFT 590 (600)
Q Consensus 543 ~~~~~~~~~~~~~~~-~~c~~~~~a~~~~~~~~~~~~~~~d~~~~h~~~ 590 (600)
+++ |||||+ |+|+|||+++|+||++.+|+|||||++|||||+
T Consensus 74 i~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 74 INT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred cce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 988 789999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-18 Score=200.23 Aligned_cols=411 Identities=10% Similarity=0.035 Sum_probs=316.3
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCc---chHHHH----------
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCI---VSWNTI---------- 105 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 105 (600)
..+...|+++.|...+...++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34567789999999999888764 45778888888999999999999999987653 321 223322
Q ss_pred --HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 106 --IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 106 --i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
...+.+.|++++|+..|+++++. .|.+...+..+...+...|++++|.+.++++++..+. +...+..+...|. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence 33567889999999999999887 4556777888888899999999999999999887543 5566777777774 4
Q ss_pred CCHHHHHHHHccCCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 007530 184 GLISDASRVFESMPERN------------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-NQFTISSVICACAGLA 250 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 250 (600)
++.++|..+++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 67899999888776421 223555677788899999999999998875 44 4556677888899999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc----CH---------hHHHHHHHHHHhcCC
Q 007530 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK----NV---------VLWNTMISGFSRHAR 317 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~ 317 (600)
++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988754 345555555666677889999999999987642 11 112344567888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLIL 397 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (600)
.++|+.+++. .+++...+..+...+.+.|++++|+..|+.+.+.. +.+...+..++..|...|++++|++.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999872 24455566778888899999999999999987542 3357788889999999999999999998
Q ss_pred cCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 398 NMP-FDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG------NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 398 ~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
... ..| +...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|...++...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 773 344 4567777888888999999999999999987765442 45567889999999999999988775
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-18 Score=197.66 Aligned_cols=451 Identities=11% Similarity=0.017 Sum_probs=263.9
Q ss_pred ccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc------ch-----------------
Q 007530 45 RERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI------VS----------------- 101 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~----------------- 101 (600)
..|+.++|...++.+++.. +.++..+..+...+...|+.++|+..|+++.+.+. ..
T Consensus 159 ~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 4577888888888887764 45666777778888888888888888876532100 00
Q ss_pred HH----------------------------------HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 007530 102 WN----------------------------------TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147 (600)
Q Consensus 102 ~~----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~ 147 (600)
+. .....+...|++++|+..|++.++. -|.+...+..+..++.+
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 00 1123345667777888888777775 34566777777777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCCh-hHH------------HHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHH
Q 007530 148 KRDVFECKQLHVFALKAAMDRNV-FVG------------TALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGF 211 (600)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~-~~~------------~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 211 (600)
.|+.++|...++++++..+.... ..+ ..+...+.+.|++++|+..|++..+ .+...+..+...+
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA 395 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888888877777776443211 111 1223456677778888777777654 2455666777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHH
Q 007530 212 VQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAVLCKTGF--------GSNMFAASSLVDMYA 282 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~y~ 282 (600)
.+.|++++|++.|++..+. .|+ ...+..+...+. .++.++|..++..+..... ......+..+...+.
T Consensus 396 ~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7778888888887777654 232 223333322221 1223333333222111000 000111222333444
Q ss_pred hhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH------------------
Q 007530 283 KCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTY------------------ 340 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~------------------ 340 (600)
..|++++|.+.|++..+ | +...+..+...|.+.|++++|+..++++.+. .|+ ...+
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555555555554432 1 2334444444555555555555555554432 121 1111
Q ss_pred --------------------------HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 341 --------------------------ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 341 --------------------------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
......+...|+.++|.++++. .+++...+..+...|.+.|++++|++
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 1233445555666666665541 13344566677888888888888888
Q ss_pred HHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 395 LILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 395 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
.|++. ...| +...+..+...+...|++++|+..++++.+..|+++..+..++.++...|++++|.++++.+....-..
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 88876 3334 467888888888888888888888888888888888888888888888888888888888877643221
Q ss_pred CCceEEEE-----EcCcccCcchHHHHHHHHHHHHHHHHCCCccC
Q 007530 473 EKSKSWVE-----IKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPE 512 (600)
Q Consensus 473 ~~~~~~~~-----i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 512 (600)
.+.....+ ..-....++.+++...++.. |...|+.|.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~ 746 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDA---MVASGITPT 746 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCC
Confidence 22111111 11124456667776654444 344566554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=177.19 Aligned_cols=419 Identities=12% Similarity=0.089 Sum_probs=310.5
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcC
Q 007530 36 LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTN 112 (600)
Q Consensus 36 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 112 (600)
...+..-.-..|++.+|..-...+-... +.+....-.+-..|.+..+.+....--....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4445555667889988886544332221 22222222233556666666654433322222 2456788888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHcCCHHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~ 191 (600)
|++.+|+.+|+.|++. -|.....|..+..++...|+.+.|.+.+...++.. |+.. +.+.+.......|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888886 34567788888888888888888888888887753 3333 33445555666788888888
Q ss_pred HHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 007530 192 VFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAVLCKTGF 267 (600)
Q Consensus 192 ~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 267 (600)
.+.+..+ | =.+.|+.|...+..+|+...|++.|++... +.|+ ...|..+...|...+.++.|...+..+....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 8877654 3 246788888888888888888888888765 3554 3577888888888888888888888777653
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISV 343 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 343 (600)
+....++..+...|...|.++.|+..+++..+ | =...||.|..++-..|+..+|...+.+.... .|+ ....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 44567777788888888888888888887764 3 3468888888888888888888888888774 444 4577788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCC
Q 007530 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRN 420 (600)
Q Consensus 344 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 420 (600)
...+...|.+++|..+|.... .+.|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 888888888888888888775 34454 456778888888888888888888876 77787 4688888888888888
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+.|.+.+.+++..+|.-...+..|+.+|...|+..+|+.-++...+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888887764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=175.38 Aligned_cols=388 Identities=14% Similarity=0.127 Sum_probs=329.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHH
Q 007530 66 NDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSV 141 (600)
Q Consensus 66 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~l 141 (600)
.-..+|+.+.+.+-..|++++|+.+++.+.+ ..+..|-.+..++...|+.+.|...|.+.++. .|+.+.. +.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhcch
Confidence 3467899999999999999999999998764 36789999999999999999999999999885 4555443 334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCC---HHHHHHHHHHHHhCCCHH
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERN---EVTWSSMVAGFVQNELYE 218 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~ 218 (600)
.......|++.+|...+.++++..+. -..+|+.|...+-..|++..|+.-|++..+-| ..+|-.|...|-..+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 44455679999999999988887442 45679999999999999999999999988744 458899999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 219 EALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
+|+..|.+.... .|+ ...+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|...+.+.
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999887764 665 4677778888899999999999999999864 344778999999999999999999999987
Q ss_pred CC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-
Q 007530 298 EE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN- 372 (600)
Q Consensus 298 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 372 (600)
.. ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..+++.+ .+.|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 64 3567889999999999999999999999887 5665 4578899999999999999999999887 66786
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...+...|+..+|++.++.+++++|+.+..|-.++.+..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 568899999999999999999999876 66776 5788999999999999999999999999999999999998888877
Q ss_pred hcCChHHHHHHHHHh
Q 007530 451 ANRRWEEVARARKLI 465 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m 465 (600)
--.+|.+-.+.++++
T Consensus 502 ~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 502 IVCDWTDYDKRMKKL 516 (966)
T ss_pred HHhcccchHHHHHHH
Confidence 667777644444333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=184.84 Aligned_cols=290 Identities=11% Similarity=0.088 Sum_probs=173.5
Q ss_pred hccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC-C------cchHHHHHHHHHcCCChh
Q 007530 44 ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR-C------IVSWNTIIGSYTTNGREQ 116 (600)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~ 116 (600)
...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...|+.+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 45566777777777776653 334556666777777777777777777665431 1 134566667777777777
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHH
Q 007530 117 EAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV----FVGTALLDVYAKCGLISDASRV 192 (600)
Q Consensus 117 ~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~ 192 (600)
+|..+|+++.+. .+++..++..++..+...|++++|.+.+..+.+.+..+.. ..+..+...+.+.|++++|.+.
T Consensus 125 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777664 2445666677777777777777777777777665433221 1344556666666777777777
Q ss_pred HccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC
Q 007530 193 FESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269 (600)
Q Consensus 193 f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 269 (600)
|+++.+ .+...+..+...|.+.|++++|+++|+++...+......++..+..++...|++++|...+..+.+.. |
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 666543 23445666666666777777777777766654222223445556666666666666666666665542 3
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSR---HARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
+...+..++..|.+.|++++|..+|+++.+ |+...++.++..+.. .|+.++++.+|++|.+.++.|+..
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 334445566666666666666666654432 555555555555443 345556666666666555444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-17 Score=178.65 Aligned_cols=388 Identities=12% Similarity=-0.014 Sum_probs=265.8
Q ss_pred HHHHHHHhcCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCC
Q 007530 73 ILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD 150 (600)
Q Consensus 73 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~ 150 (600)
.+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+...++. -|.+...+..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 34455556666666666666543 255556666666666666666666666666664 23345566666666666666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----------------------------CCH
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-----------------------------RNE 201 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------------------------~d~ 201 (600)
+++|...+..+...+...+..... ++.-+.+......+...++.-+. .+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 666666555443332111111111 11111110011112222211111 000
Q ss_pred ---HHHHHHHHH---HHhCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhH
Q 007530 202 ---VTWSSMVAG---FVQNELYEEALILFRRAQVLG-LEY-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA 273 (600)
Q Consensus 202 ---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 273 (600)
..+..+... ....+++++|++.|++....+ ..| +...+..+...+...|++++|...+..+++.. +.+...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 011111111 123468999999999998765 334 34567777778889999999999999998864 445668
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSH 349 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 349 (600)
+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHH
Confidence 88899999999999999999987653 46788999999999999999999999999885 44 45667778888999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-H-------HHHHHHHHHHHcCC
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA-S-------MWGSLLASCRNYRN 420 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~~~ 420 (600)
.|++++|+..|+...+.. +.+...+..+...+...|++++|.+.|++. ...|+. . .++..+..+...|+
T Consensus 446 ~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 999999999999987532 335678889999999999999999999885 333321 1 12222233344699
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999888999999999999999999999888654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=176.22 Aligned_cols=299 Identities=14% Similarity=0.098 Sum_probs=158.6
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHcC
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN---VFVGTALLDVYAKCG 184 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 184 (600)
.+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4456677777777777777653 44555666666667777777777777776665432211 234566677777777
Q ss_pred CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 185 LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 185 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
++++|.++|+++.+ .+..+++.++..+.+.|++++|++.++++...+..++....
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------------- 179 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI---------------------- 179 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH----------------------
Confidence 77777777776654 34556677777777777777777777776654322111000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
...+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+ |+.
T Consensus 180 ---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~- 247 (389)
T PRK11788 180 ---------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEY- 247 (389)
T ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhh-
Confidence 00112233333334444444433333321 122333444444444455555555555444321 211
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRN 417 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 417 (600)
....+..++.+|.+.|++++|...++++ ...|+...+..+...+..
T Consensus 248 ---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~ 294 (389)
T PRK11788 248 ---------------------------------LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEE 294 (389)
T ss_pred ---------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 1223344444444445555554444443 223444444555555566
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHhhhCCCccCCce
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA---NRRWEEVARARKLIRDSEVKKEKSK 476 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 476 (600)
.|++++|..+++++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|.+
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 6666666666666666666654 33333333332 3466777777777776666666653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-16 Score=174.90 Aligned_cols=402 Identities=9% Similarity=-0.013 Sum_probs=261.9
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHH
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTI 105 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 105 (600)
.+.+.....-.+......|+.+.|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456667777888888999999999998887633 4556678889999999999999999999853 3456678888
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...+...|++++|+..+++..+. .|.+.. +..+..++...|+.++|...++.+++..+. +..++..+..++.+.|.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 89999999999999999999887 455666 888888899999999999999999998655 66667778888889999
Q ss_pred HHHHHHHHccCCCCCHH--------HHHHHHHHHH-----hCCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----HHH
Q 007530 186 ISDASRVFESMPERNEV--------TWSSMVAGFV-----QNELY---EEALILFRRAQVL-GLEYNQF-TIS----SVI 243 (600)
Q Consensus 186 ~~~A~~~f~~m~~~d~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll 243 (600)
.+.|.+.++.... ++. ....++..+. ..+++ ++|++.++.+... ...|+.. .+. ..+
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9999999988776 211 1222222222 12233 6777778777753 2223221 111 113
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC-------HhHHHHHHHHHHhc
Q 007530 244 CACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN-------VVLWNTMISGFSRH 315 (600)
Q Consensus 244 ~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~ 315 (600)
.++...|++++|...|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+ ...+..+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667777788777777776522 22 122224566777777777777777654321 22344455566677
Q ss_pred CChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAG-----------LHPNE---QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
|++++|+.+++++.... -.|+. ..+..+...+...|+.++|++.++++.... +.+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 77777777777766531 01221 123334445555666666666666665322 223445555666
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+...|++++|++.+++. ...|+ ...+..+.......|++++|+.+++++++..|+++
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 666666666666666654 33343 34445555555556666666666666666666655
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-17 Score=176.10 Aligned_cols=398 Identities=10% Similarity=-0.002 Sum_probs=303.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 141 (600)
+.++....-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++.++. .|.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44555556667778889999999999998764 34445899999999999999999999999886 46667778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHH
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYE 218 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~ 218 (600)
..++...|+.++|...++.+++..+. +.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 88999999999999999999998543 556 88899999999999999999998875 3 5667777888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHH------HHHHHHHHHH-----ccCch---HHHHHHHHHHHHh-CCCCchh-H-HHH---HH
Q 007530 219 EALILFRRAQVLGLEYNQF------TISSVICACA-----GLAAL---IQGKQVHAVLCKT-GFGSNMF-A-ASS---LV 278 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---l~ 278 (600)
+|++.++.... .|+.. .....+.... ..+++ +.|...++.+++. ...|+.. . ..+ .+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999886653 33320 1111222221 12233 6778888888764 2223221 1 111 12
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcC---H-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccC
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKN---V-VLWNTMISGFSRHARSVEVMILFEKMQQAGLHP---NEQTYISVLSACSHIG 351 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g 351 (600)
..+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++....... .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34457799999999999988532 1 112224668999999999999999987643111 1344566777889999
Q ss_pred CHHHHHHHHHHHHHhcC----------CCcc---HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 007530 352 MVEKGKSYFDLMVKQHN----------VLPN---VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCR 416 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 416 (600)
++++|.++++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999975321 1123 234566778899999999999999987 3334 5788999999999
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..|+.++|++.++++++++|+++..+..++..+...|++++|..+++.+.+..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-17 Score=174.51 Aligned_cols=351 Identities=12% Similarity=-0.015 Sum_probs=265.4
Q ss_pred hcCChHHHHHHHccCCC------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHH
Q 007530 80 KCGLISGARKVFDEMPQ------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~ 153 (600)
+..+++.---+|..-++ -+....-.++..+.+.|++++|+.+++..+.. .|-+...+..++.++...|+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHH
Confidence 44555555555555543 12334455677788889999999999888887 45556667777777778899999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
|...++.+++..+. +...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...++++...
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999887544 667788888899999999999999888765 35678888888999999999999999887665
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHH
Q 007530 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNT 307 (600)
Q Consensus 231 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 307 (600)
... +...+.. +..+...|++++|...+..+++....++......+...+.+.|+.++|...|++... .+...+..
T Consensus 174 ~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPP-RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCC-CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 322 2222322 334778899999999988887765334444555667788889999999999887653 45677888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 308 MISGFSRHARSVE----VMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 308 li~~~~~~g~~~~----A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
+...|.+.|++++ |+..|++..+. .| +...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 8888999999885 79999998875 44 45677888888999999999999999987532 2245567778889
Q ss_pred HHhcCCHHHHHHHHHcC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 383 LGRAGLIHEAYDLILNM-PFDATASM-WGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
|.+.|++++|...++++ ...|+... +..+..++...|+.++|...++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999887 34566544 33456678889999999999999999988753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-15 Score=167.25 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=127.8
Q ss_pred HHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVE 354 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 354 (600)
...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. |+. ..+..+.......|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 3334466777777777765442 333445555666667777777777777776643 332 22223333444557788
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 355 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
+|...++..++ +.|+...|..+..++.+.|+.++|+..+++. ...|+ ...+..+..++...|+.++|+..+++++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887777763 3456677777778888888888888888776 34443 5667777777888888888888888888
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 433 GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 433 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+++|+++..+..++.+|...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888887776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-15 Score=158.54 Aligned_cols=432 Identities=10% Similarity=0.007 Sum_probs=314.7
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHH-H
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDT--LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN-T 104 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~ 104 (600)
+..|+. .|..++ ...+.|++..|...+.+.++.. |+. .++ .++..+...|+.++|+..+++...|+...+. .
T Consensus 31 p~~~~~-~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 31 PAMADT-QYDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccchhH-HHHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 334442 244333 3467899999999999998764 442 344 8889999999999999999998877444444 3
Q ss_pred H--HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 007530 105 I--IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182 (600)
Q Consensus 105 l--i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 182 (600)
+ ...|...|++++|+++|+++.+. .|.|...+..++..+...++.++|.+.+..+.+.. |+...+-.++..+..
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~ 181 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHh
Confidence 3 45778889999999999999998 46667778888889999999999999999998863 445555555555555
Q ss_pred cCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-----Hc
Q 007530 183 CGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI------SSVICAC-----AG 248 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-----~~ 248 (600)
.++..+|.+.++++.+ | +...+..+..+..+.|-...|+++..+-... +.|...-. ...+..- ..
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 6667669999999875 3 5677888889999999999999877653211 11111111 1111000 01
Q ss_pred cCch---HHHHHHHHHHHHh-C-CCCchhH-HHHH---HHHHHhhCCHHHHHHHHhcCCCc----CHhHHHHHHHHHHhc
Q 007530 249 LAAL---IQGKQVHAVLCKT-G-FGSNMFA-ASSL---VDMYAKCGCVVDAYFVFSGIEEK----NVVLWNTMISGFSRH 315 (600)
Q Consensus 249 ~g~~---~~a~~~~~~~~~~-~-~~~~~~~-~~~l---~~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~ 315 (600)
..++ +.|..-++.+... + .++.... ..+. +-++.+.|+..++++.|+.+... -..+--++..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 1223 3344444444431 2 2322222 2333 34567889999999999999843 234566788999999
Q ss_pred CChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC----------Cc--c-HHHHH
Q 007530 316 ARSVEVMILFEKMQQAG-----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV----------LP--N-VFHYS 377 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~p--~-~~~~~ 377 (600)
+++++|+.+++.+.... ..++......|..++...+++++|..+++.+.+.... .| | ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999987642 1223344578899999999999999999999752220 12 2 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 378 CMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
.++..+.-.|++.+|++.++++ .. +-|...+..+...+...|...+|++.++.+..++|++..+....+.++...|+|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 5677888999999999999988 22 347889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
++|..+.+...+..
T Consensus 501 ~~A~~~~~~l~~~~ 514 (822)
T PRK14574 501 HQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999988887654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-16 Score=167.22 Aligned_cols=312 Identities=12% Similarity=0.000 Sum_probs=156.2
Q ss_pred HHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHH
Q 007530 78 YSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154 (600)
Q Consensus 78 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a 154 (600)
+.+.|++++|..+++.... .+...+..++.+....|++++|+..|+++... .|.+...+..+...+...|+.+.|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHH
Confidence 3344555555555544321 12333334444444455555555555555554 233444455555555555555555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007530 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231 (600)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 231 (600)
...++.+++..+. +..++..+...|...|+.++|...++.+.. | +...+..+ ..+.+.|++++|+..++.+....
T Consensus 130 i~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 130 ADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555554222 344455555555555555555555544321 1 22222222 22455555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH----HHHHHhcCCC---cCHhH
Q 007530 232 LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD----AYFVFSGIEE---KNVVL 304 (600)
Q Consensus 232 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~----A~~~~~~~~~---~~~~~ 304 (600)
..++......+..++...|++++|...+..+++.. +.+...+..+...|...|++++ |...|++..+ .+...
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a 286 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI 286 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence 22233333333445555555566655555555543 3345555555666666666553 4555554432 23445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDI 382 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~ 382 (600)
+..+...+.+.|++++|+..+++.... .|+ ......+..++...|++++|...++.+.+. .|+. ..+..+..+
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~a 361 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 556666666666666666666666553 233 334444555566666666666666665432 2322 222233445
Q ss_pred HHhcCCHHHHHHHHHcC
Q 007530 383 LGRAGLIHEAYDLILNM 399 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m 399 (600)
+...|+.++|...|++.
T Consensus 362 l~~~G~~deA~~~l~~a 378 (656)
T PRK15174 362 LLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 56666666666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-15 Score=161.25 Aligned_cols=387 Identities=9% Similarity=-0.044 Sum_probs=286.1
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCC
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGR 114 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 114 (600)
..-..+...|+++.|...+...++. .|++..|..+..+|.+.|++++|++.++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4455667889999999999998864 57888899999999999999999999997654 356689999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC----------------------------
Q 007530 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM---------------------------- 166 (600)
Q Consensus 115 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------------- 166 (600)
+++|+.-|......+ +.+......++..... ..+........+...
T Consensus 210 ~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 210 YADALLDLTASCIID--GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 999999887765543 1111111111111110 001111111111100
Q ss_pred -CCChhHHHHHHHHH------HHcCCHHHHHHHHccCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 007530 167 -DRNVFVGTALLDVY------AKCGLISDASRVFESMPE------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233 (600)
Q Consensus 167 -~~~~~~~~~li~~y------~~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 233 (600)
..+......++..+ ...+++++|.+.|+...+ .+...|+.+...+...|++++|+..|++.... .
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~ 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--D 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 00000011111111 123678999999987764 24567888899999999999999999998875 4
Q ss_pred CC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHH
Q 007530 234 YN-QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMI 309 (600)
Q Consensus 234 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 309 (600)
|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 54 5578888888999999999999999998875 55688899999999999999999999998764 3567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH--------HHHHHHHH
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV--------FHYSCMID 381 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~ 381 (600)
..+.+.|++++|+..|++..+. .+-+...+..+...+...|++++|+..|+...+. .|+. ..++....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHH
Confidence 8999999999999999999875 2334678888899999999999999999998643 2321 11222233
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+...
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 344579999999999885 44554 56789999999999999999999999999877543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-14 Score=159.74 Aligned_cols=432 Identities=8% Similarity=-0.040 Sum_probs=305.7
Q ss_pred CCCCCCHhHHHHH-HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHccCCCCCcchHHH
Q 007530 27 NANATELSTLQAT-LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSK-CGLISGARKVFDEMPQRCIVSWNT 104 (600)
Q Consensus 27 ~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~ 104 (600)
....|+..++... .+.+...++++.+..++..+.+.+ +.+......|-.+|.. .++ +.+..+++...+.|...+..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~a 252 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRIT 252 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHH
Confidence 3344445545554 788888899888999998888876 3444445555566666 355 77777766544456777777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHH--------------------------------------------
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSS-------------------------------------------- 140 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~-------------------------------------------- 140 (600)
+...|.+.|+.++|.++++++...-.-.|...++..
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777777776442100011111110
Q ss_pred -------------------------------------------------HHHHHhcCCChHHHHHHHHHHHHh-C-CCCC
Q 007530 141 -------------------------------------------------VLCACAAKRDVFECKQLHVFALKA-A-MDRN 169 (600)
Q Consensus 141 -------------------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~ 169 (600)
+.-.....|+.++|.+++...... + -..+
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 001112234444555555554442 1 1123
Q ss_pred hhHHHHHHHHHHHcCC---HHHHHHHHc-------------------------cCCC---C--CHHHHHHHHHHHHhCCC
Q 007530 170 VFVGTALLDVYAKCGL---ISDASRVFE-------------------------SMPE---R--NEVTWSSMVAGFVQNEL 216 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~---~~~A~~~f~-------------------------~m~~---~--d~~~~~~li~~~~~~g~ 216 (600)
....+-|+..|.+.+. ..+|..+-. .... + +...|..+...+.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 4455577788877766 233322211 1111 2 55677777777776 78
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
.++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|...|++
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88999988877664 477665555566667899999999999987654 44445566778889999999999999988
Q ss_pred CCCcCHhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-c
Q 007530 297 IEEKNVVLWNT---MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-N 372 (600)
Q Consensus 297 ~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 372 (600)
..+.++..++. +.......|++++|+..+++..+. .|+...+..+..++.+.|++++|+..++...+. .| +
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~ 642 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNN 642 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC
Confidence 77543333333 333344559999999999999874 678888999999999999999999999999743 44 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++..+....++...
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 678888888999999999999999987 4445 57889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCC
Q 007530 451 ANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~~ 470 (600)
+..+++.|.+.+++.-.-++
T Consensus 723 ~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHhhcCc
Confidence 99999999998877665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-13 Score=145.96 Aligned_cols=387 Identities=13% Similarity=0.061 Sum_probs=280.2
Q ss_pred HHhcCChHHHHHHHccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHH
Q 007530 78 YSKCGLISGARKVFDEMPQRCIV---SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFEC 154 (600)
Q Consensus 78 y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a 154 (600)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... .+.+......+...+...|+++.|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999998753332 2348889999999999999999998732 233344444446688889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007530 155 KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNE--VTWSSMVAGFVQNELYEEALILFRRAQVLGL 232 (600)
Q Consensus 155 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 232 (600)
.++++.+++..+. +..++..++..|.+.++.++|++.++++...+. ..+-.++..+...++..+|++.++++.+..
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 9999999998765 577788889999999999999999999987443 344333333334566666999999999863
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHH-----HhhCC---HHHHHHHHhcCCC
Q 007530 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN-----MFAASSLVDMY-----AKCGC---VVDAYFVFSGIEE 299 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~y-----~~~g~---~~~A~~~~~~~~~ 299 (600)
+-+...+.....+..+.|....|.++...-...--+.+ ......++..- ....+ .+.|..-++.+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 33566667888888999988888776554221100000 00000111100 01112 2233333333221
Q ss_pred -----cCH-h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC-
Q 007530 300 -----KNV-V----LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN- 368 (600)
Q Consensus 300 -----~~~-~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 368 (600)
|.. . ..--.+.++...|+..++++.|+.|...|.+.-..+-..+..+|...+.+++|..+++.+....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 211 1 22234667888999999999999999988664455778899999999999999999999875432
Q ss_pred ---CCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCC--------------CC--CHH-HHHHHHHHHHHcCChHHHHHHH
Q 007530 369 ---VLPNVFHYSCMIDILGRAGLIHEAYDLILNMPF--------------DA--TAS-MWGSLLASCRNYRNLELAEIAA 428 (600)
Q Consensus 369 ---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~ 428 (600)
..++......|..+|...+++++|..+++++.- .| |-. ....++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233555567899999999999999999988721 12 222 3344566677899999999999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
++++...|.|+.....++.++...|...+|...++.....
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999776544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-12 Score=123.45 Aligned_cols=390 Identities=14% Similarity=0.119 Sum_probs=254.8
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCChHHH-HHHHccC-----------------
Q 007530 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINF--YSKCGLISGA-RKVFDEM----------------- 94 (600)
Q Consensus 35 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--y~~~g~~~~A-~~~~~~~----------------- 94 (600)
+=+.+++. ...|.+.++--+++.|...|.+.+..+--.|+.. |....++.-| ++-|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44445543 3467888999999999999988777776666543 2222222111 2222223
Q ss_pred ------CCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 007530 95 ------PQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR 168 (600)
Q Consensus 95 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (600)
..+...+|..||.|+++--..+.|.++|++-.... .+.+..+||.++.+-+- ..++++..+|....+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 23466789999999999999999999999998877 78899999999987553 34488999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHc----cCC----CCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc--C--CCC-
Q 007530 169 NVFVGTALLDVYAKCGLISDASRVFE----SMP----ERNEVTWSSMVAGFVQNELYEE-ALILFRRAQVL--G--LEY- 234 (600)
Q Consensus 169 ~~~~~~~li~~y~~~g~~~~A~~~f~----~m~----~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~p- 234 (600)
|..++|++++..++.|+++.|.+.+- +|. +|...+|..+|..+.+.++..+ |..++.++++. | ++|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999999988776544 343 4788899999998888877644 45555555432 2 333
Q ss_pred ---CHHHHHHHHHHHHccCchHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhhCCHHHHHHHHhcCCC----c
Q 007530 235 ---NQFTISSVICACAGLAALIQGKQVHAVLCKTG----FGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEE----K 300 (600)
Q Consensus 235 ---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~ 300 (600)
|..-|.+.++.|.+..+.+.|.+++..+.... +.|+ ..-|..+....+....++.-...|+.|.. |
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 45667888889999999999999887765421 2332 33456677777888888888888888764 5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-C-------------------HHHHHH-H
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG-M-------------------VEKGKS-Y 359 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~-------------------~~~a~~-~ 359 (600)
+..+-..++.+..-.|.++-.-++|.+|+..|..-+...-.-++...++.. . +.++.+ -
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666677777777877777777777777664333333333333333322 0 000000 0
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDATASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 360 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
-.++ +...+ .....++..-.+.|.|..++|.+++.-. |..|.......|+.+....++...|..+++-+.
T Consensus 512 ~~R~-r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 512 PIRQ-RAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHH-HhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0111 11122 2335566666667777777776666433 333333334445555555555555555555554
Q ss_pred c
Q 007530 433 G 433 (600)
Q Consensus 433 ~ 433 (600)
.
T Consensus 589 ~ 589 (625)
T KOG4422|consen 589 A 589 (625)
T ss_pred H
Confidence 3
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-13 Score=138.34 Aligned_cols=430 Identities=13% Similarity=0.040 Sum_probs=258.6
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHccCCC--CC--cchHHHHHH
Q 007530 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNND--TLTSNILINFYSKCGLISGARKVFDEMPQ--RC--IVSWNTIIG 107 (600)
Q Consensus 34 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~ 107 (600)
+.++.|..-+--.|+.+.+..+...++....... ...|=-+.++|...|+++.|...|.+..+ +| +..+--|..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 3444455555555555555555555554431111 12233445555555666666655554432 11 223334555
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
.|.+.|+.+.|...|+...+. .|.+..|...+...|+..+ ..+.|..+....++.- +.|...|-.+..+|-..
T Consensus 351 m~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 556666666666666655554 3444455555555555443 3344444444444443 22444555554444433
Q ss_pred CCH------HHHHHHHcc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHH------HHHHHHHHHH
Q 007530 184 GLI------SDASRVFES-MPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL---GLEYNQF------TISSVICACA 247 (600)
Q Consensus 184 g~~------~~A~~~f~~-m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~a~~ 247 (600)
.-+ ..|..++.. +...-+...|.+...+...|++++|...|...... ...+|.. +--.+....-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 222 222222211 11234556666666677777777777777766543 1223321 1122333445
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
..++.+.|.++|..+++.. +.-+..|--|.-+.-..+...+|...+....+ .++..|+.+...+.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 5667777777777777653 22222222233233333556677777776553 5677787777788888888888887
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 325 FEKMQQAG-LHPNEQTYISVLSACSH------------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 325 ~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
|....+.- ..+|.....+|.+.|.. .+..++|++.|.++++.. +.+...-|-+.-.++..|++.+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchH
Confidence 76665542 33677777777776542 245678888888887432 3477777778888999999999
Q ss_pred HHHHHHcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 392 AYDLILNMP--FDATASMWGSLLASCRNYRNLELAEIAAKQLFG--MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 392 A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
|.++|.+.. ......+|-.+...|...|++..|.++|+..++ ...+++.....|+.++.++|++.+|.+.......
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999872 233567899999999999999999999999987 3345677888999999999999999998877665
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
..
T Consensus 745 ~~ 746 (1018)
T KOG2002|consen 745 LA 746 (1018)
T ss_pred hC
Confidence 43
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-12 Score=133.96 Aligned_cols=452 Identities=11% Similarity=0.043 Sum_probs=300.6
Q ss_pred HHHHHHHHh--ccCCchhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---------------
Q 007530 36 LQATLQSCA--RERAPVRGKVCHAKIIGM--GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--------------- 96 (600)
Q Consensus 36 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------- 96 (600)
+..+.+||. ..+++..|..+|...+.. ...||+.+... ..+.++|+.+.|+..|.+..+
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV 242 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 444556665 456788888888876554 34566544322 445567777777666665543
Q ss_pred -------------------------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCC-CCChhhHHHHHHHHhcCCC
Q 007530 97 -------------------------RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKT-PYSEFTVSSVLCACAAKRD 150 (600)
Q Consensus 97 -------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~p~~~t~~~ll~~~~~~~~ 150 (600)
.|++..|.|..-|.-.|+++.+..+...+...-.. +.-..+|..+.+++-..|+
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 35556677777777778888888888777664200 1123457788888888888
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCC----CHHHHHHH
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNE----LYEEALIL 223 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g----~~~~A~~~ 223 (600)
++.|.++|.+..+.....-+..+--|..+|.+.|+++.+...|+.+.+ | +..+...+...|+..+ ..++|..+
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 888888888777764332244455678888888888888888888764 2 4556666777777665 44566666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 007530 224 FRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL----CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE 299 (600)
Q Consensus 224 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 299 (600)
+.+....- +-|...|..+...+-...-+ .....+..+ ...+..+.+.+.|.+...+...|+++.|...|.....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 65555432 33556666666555443332 225444443 3456667888899999999999999999988876542
Q ss_pred -------cCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 300 -------KNV------VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 300 -------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+|. .+-..+...+-..++.+.|.+.+..+.+. .|+-+ .|..++......+...+|...+.....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 222 12222344555667888999999998885 46544 344444233345778889999988875
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHH----HHcCCCCCCHHHHHHHHHHHHH------------cCChHHHHHHHH
Q 007530 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDL----ILNMPFDATASMWGSLLASCRN------------YRNLELAEIAAK 429 (600)
Q Consensus 366 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~ 429 (600)
...-.|+ .++.+...+.+...+..|.+- +.+....+|+.+.-+|.+.|.. .+..+.|++.|.
T Consensus 559 ~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 559 IDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred cccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 4444444 566667778887777777763 4444345788888888876643 245789999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc-ccCcchHHHHHHH
Q 007530 430 QLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK-RNHPRIAEIYSKL 497 (600)
Q Consensus 430 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l 497 (600)
++++.+|.|..+-+.++-+++..|++.+|..+|.+.++....- .-.|+-+.++ .-.++...+.+..
T Consensus 637 kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 637 KVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999998865421 2245544433 3345555555433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-13 Score=126.98 Aligned_cols=411 Identities=10% Similarity=0.020 Sum_probs=270.1
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHccCCC--CC------cchHHHHHHH
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTS-NILINFYSKCGLISGARKVFDEMPQ--RC------IVSWNTIIGS 108 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~ 108 (600)
.+.+-|.......+|...++.+++...-|+.-.. -.+-+.|.+.+.+..|+++++.... |+ +...|.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555555667788888888887766664332 2344667788888999988864432 22 2356666677
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------------CChhHHHHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD------------RNVFVGTAL 176 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~l 176 (600)
|.+.|+++.|+..|+...+. .||-.+-..++-++...|+.++.++.|..++..-.. |+....|--
T Consensus 286 fiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred EEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 89999999999999998885 477776666666666789999999999998875322 222222221
Q ss_pred H-----HHHHHcCC--HHHHH----HHHccCCCCCHH---HHH----------H--------HHHHHHhCCCHHHHHHHH
Q 007530 177 L-----DVYAKCGL--ISDAS----RVFESMPERNEV---TWS----------S--------MVAGFVQNELYEEALILF 224 (600)
Q Consensus 177 i-----~~y~~~g~--~~~A~----~~f~~m~~~d~~---~~~----------~--------li~~~~~~g~~~~A~~~~ 224 (600)
| .-+-+... -++++ ++..-...||-. -|. - -...|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1 11222111 12221 222222222211 011 0 123478999999999999
Q ss_pred HHHHHcCCCCCHHHHH--HHHHH---------------------------H-------HccCchHHHHHHHHHHHHhCCC
Q 007530 225 RRAQVLGLEYNQFTIS--SVICA---------------------------C-------AGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 225 ~~m~~~g~~p~~~t~~--~ll~a---------------------------~-------~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
+-.....-+.-...-+ +++.. . ...|++++|...+.+.+...-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876543222111111 11111 1 1245677777777777765433
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
-....|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...++..|++++.+.... ++-|...+.-|..
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 3333343 3345667788888888876654 345666666677777778888888888766553 4445677778888
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHH-cCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRN-YRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~-~~~~~~ 423 (600)
.|-+.|+-.+|.+.+-.-- .-++.+.++..-|...|....-+++|..+|++. -++|+..-|..++..|.+ .|++..
T Consensus 601 lydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 8888888888887765432 123447788888888888888899999999887 468999999988887754 799999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
|..+++.+.+..|.+....-.|..++...|.-
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999888888888888877753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-10 Score=110.50 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=299.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (600)
.+|+.-...|.+.+.++-|..+|...++. .|-+...|......--..|..+....+++.++..-+. ....|-....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence 46777777788888888888888888886 6667778888887777888888888899888887443 55667777777
Q ss_pred HHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 007530 180 YAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256 (600)
Q Consensus 180 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 256 (600)
+...|++..|+.++++.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---+++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHH
Confidence 8888999999988776654 3667888888888999999999999988776 4567766666666666788999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 333 (600)
+++++.++. ++.-...|-.+.+.+-+.++++.|++.|..-.+ | .+..|-.+...--+.|...+|..+|++....+
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 999888876 355567788888999999999999999887654 3 45678888877788889999999999988764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007530 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413 (600)
Q Consensus 334 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 413 (600)
+-|...|...+..-.+.|+.+.|..+..+..++ .+.+...|..-|.+..+.++-..+.+.+++-. .|+.+.-++..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHH
Confidence 346778888999999999999999999888764 35567788888888888888888888888764 45566667777
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEc
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK 482 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~ 482 (600)
.+....+++.|..-|.++++.+|++..++..+-..+...|.-++-.++++...... |..|-.|..+.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 78888999999999999999999999999999999999999999999998876543 55566776554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-10 Score=110.50 Aligned_cols=414 Identities=10% Similarity=0.066 Sum_probs=314.6
Q ss_pred HhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHH
Q 007530 79 SKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (600)
...+++..|+.+|+.... ++...|---+..=.++.+...|..++++.+.. +|--...|.--+-.--..|++..|+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345678889999998764 68888999999999999999999999999885 3322334444555556789999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 007530 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP--ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE 233 (600)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 233 (600)
++|+.-.+ ..|+...|++.|+.=.+-..++.|..+++... .|++.+|--....=.++|+...|..+|....+. -
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 99998876 58899999999999999999999999999854 699999999999999999999999999887653 1
Q ss_pred CCHHHHHHHHHHH----HccCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHH---hcC-----CC
Q 007530 234 YNQFTISSVICAC----AGLAALIQGKQVHAVLCKTGFGSN--MFAASSLVDMYAKCGCVVDAYFVF---SGI-----EE 299 (600)
Q Consensus 234 p~~~t~~~ll~a~----~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~---~~~-----~~ 299 (600)
.|...-..+..++ .....++.|.-++..+++.= +.+ ...|..+...--+-|+......+. +++ ..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2233333333344 45667899999999988762 333 556666666656666654444332 222 22
Q ss_pred ---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCCHHHHHHHHHHHHHh
Q 007530 300 ---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-------TYISVLSAC---SHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 300 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 366 (600)
-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.+.++++..++
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 25567888888888889999999999999886 666321 232222222 347899999999999874
Q ss_pred cCCCc-cHHHHHHHHHHHH----hcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 367 HNVLP-NVFHYSCMIDILG----RAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 367 ~~~~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+.| ...++..+--+|+ ++.++..|.+++... +..|...++...+..-.+.++++....++++.++..|.+..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 445 5566666655554 678999999999765 88899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEE-EEEcCcccCcchHHHHHHHHHHHHH
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW-VEIKGKRNHPRIAEIYSKLEKLVEE 503 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~l~~~ 503 (600)
++.-.+..-...|+++.|..+|+...+....-.|...| ..|+--...++.+.+.+..+++++.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999998876655555555 2344445556666666555555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-12 Score=126.62 Aligned_cols=287 Identities=12% Similarity=0.003 Sum_probs=189.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
.|++++|.+.+....+.. +-....+.....+....|+.+.+.+.+.++.+...++...........+...|+.++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777655542 111223333345557788888888888888775433333333344678888889988888
Q ss_pred HHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 192 VFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 192 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
.++...+ .+......+...|.+.|+|++|.+++..+.+.+..++. ....+-.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 8888765 35677888888888889999999888888877644322 1111000
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
..+..++....+..+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .||.... ++.
T Consensus 230 ---~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 230 ---QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 0111122222222334444555555542 46667777778888888888888888887763 4444221 233
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 424 (600)
+....++.+++.+..+...+.+ +-|...+.++...+.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3345588888888888876543 234556777888888888888888888876 5668888888888888888888888
Q ss_pred HHHHHHHhcC
Q 007530 425 EIAAKQLFGM 434 (600)
Q Consensus 425 ~~~~~~~~~~ 434 (600)
.+.+++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 8888888764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-10 Score=111.95 Aligned_cols=419 Identities=14% Similarity=0.046 Sum_probs=344.4
Q ss_pred hchhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHcc
Q 007530 16 FSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNN--DTLTSNILINFYSKCGLISGARKVFDE 93 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 93 (600)
.....+.+.+.+|...+...|..=..+|-+.|.+-.++.+...++.-|+.. -..+++.-...|.+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 445667888889999999999999999999999999999999999888753 356888888999999999999999987
Q ss_pred CCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh
Q 007530 94 MPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV 170 (600)
Q Consensus 94 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 170 (600)
..+ .+...|...+..--..|..++-..+|++.... .|-....|....+-.-..|++..|+.++..+.+..+. +.
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 764 46678888887777789999999999999987 6767777777778888899999999999999998655 78
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF-TISSVICACA 247 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~ 247 (600)
..|-+-+..-.....++.|+.+|.+... ++...|..-+..---.++.++|++++++..+. -|+-. .|..+...+-
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 8899999999999999999999998764 56777877777777789999999999988774 45544 5666777788
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
+.++++.|+..|..-.+. ++..+..|-.|.+.--+.|.+-.|+.+|++..- .|...|-..|..-.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 888888888887765554 355677888999999999999999999997763 4778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC
Q 007530 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA 403 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 403 (600)
..+..+. .+-+...|..-|....+.++-......+.+. .-|..+.-++..++-...++++|.+.|.+. ...|
T Consensus 776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9988876 4556677777777666666644444444333 345667777888899999999999999887 5556
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 404 T-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 404 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
| ..+|.-+...+..+|.-+.-.+++.+...-+|.....+...+.
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 5 5799999999999999999999999999999988776665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=139.24 Aligned_cols=254 Identities=14% Similarity=0.102 Sum_probs=110.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISS-VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
...+.+.|++++|++++++-.....+|+...|-. +...+...++.+.|...+..+...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 3444455555555555543332221233333322 22333445556666666666655442 244455556665 57777
Q ss_pred HHHHHHHHhcCC--CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 287 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
+++|.+++...- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888877776553 2456677788888889999999999999977543 3456677888888899999999999999999
Q ss_pred HHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 364 VKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 364 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
++. .| +......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 854 45 4677888999999999999988777665 12345678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
....++.++...|+.++|.+++.+.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-11 Score=124.22 Aligned_cols=330 Identities=15% Similarity=0.147 Sum_probs=191.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRV 192 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 192 (600)
|+.++|.+++.+.++. .|-+...|.+|...+-..|+.+++...+-.+--.. +.|...|-.+.....+.|.+++|.-.
T Consensus 153 g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 6666666666666655 34455556666666666666555554433222222 22445555555655666666666666
Q ss_pred HccCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 193 FESMPERNE---VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF----TISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 193 f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|.+..+.++ ...---+..|-+.|+...|++.|.++.+...+.|.. +.-.++..+...+.-+.|.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 655544222 222222344555566666666666555432111111 1112222333333334444433333331
Q ss_pred -CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------
Q 007530 266 -GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA------------- 331 (600)
Q Consensus 266 -~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------- 331 (600)
+-..+ ...+|.++..|.....++.|......+...
T Consensus 310 ~~~~~~-------------------------------~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 310 EKDEAS-------------------------------LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred cccccc-------------------------------ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 11122 234445555555555555555555554441
Q ss_pred --------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCHHHHHHH
Q 007530 332 --------------GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLIHEAYDL 395 (600)
Q Consensus 332 --------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 395 (600)
++.++... .-+.-+..+....+....+..... ...+.| +...|.-+.++|...|++.+|.++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 12222222 122223344444444444444443 335333 577889999999999999999999
Q ss_pred HHcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 396 ILNM---PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 396 ~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
|..+ +...+...|--+...+...|.+++|.+.+++++.+.|++..+...|+.+|.+.|+.++|.+++..+..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9988 2233578999999999999999999999999999999999999999999999999999999998876333222
Q ss_pred CCceEE
Q 007530 473 EKSKSW 478 (600)
Q Consensus 473 ~~~~~~ 478 (600)
.+.+.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 344555
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=110.67 Aligned_cols=350 Identities=11% Similarity=0.063 Sum_probs=222.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--hhHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN--VFVGTA 175 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 175 (600)
|...+....-.+-+.|....|.+.|...... .|.+-..|..|...+. +.+.+. .... |.+.| ...---
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit---~~e~~~----~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELIT---DIEILS----ILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhc---hHHHHH----HHHh-cCcccchHHHHHH
Confidence 4333333334455667777777777776654 4444444444443332 222221 1111 12211 111122
Q ss_pred HHHHHHHcCCHHHHHHHHccCCC---C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHcc
Q 007530 176 LLDVYAKCGLISDASRVFESMPE---R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGL-E-YNQFTISSVICACAGL 249 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~---~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~t~~~ll~a~~~~ 249 (600)
+..+|-.....+++..-.+.... + +...-+....+.-.+.++++|+.+|+++.+... + -|..||+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34455555555555544443332 1 112222223334456778888888888776521 1 1556777776543322
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007530 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFE 326 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 326 (600)
..+.---+....+- +--+.+...+.+-|+-.++.++|...|++..+ .....|+.|..-|....+...|++-++
T Consensus 313 skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22211111111111 22344566677778888888888888887664 356789989899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC
Q 007530 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMP--FDA 403 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 403 (600)
..++-. +-|-..|-.|..+|.-.+...-|.-+|++.. .++| |...|.+|.+.|.+.++.++|.+-|++.- ...
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 988752 3477788999999999999999999999886 3455 78899999999999999999999998872 233
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFG-------MEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
+...+..|...+...++.++|.+.+++-++ .+|....+...|+.-+.+.+++++|...-...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 557888899999999999999999998876 44444455667888899999999998765544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=124.82 Aligned_cols=291 Identities=12% Similarity=0.019 Sum_probs=194.5
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYS-EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
...|+++.|.+.+.+..+. .|+ ...+.....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3578999999988877664 233 334455566777789999999998888776544444455556778888888888
Q ss_pred HHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 189 ASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 189 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|...++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.++......-..+.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------------------
Confidence 8888888765 256677888888888888888888888888776432221111111110
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY-- 340 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-- 340 (600)
..+++.-......+...+.+...++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 233 ---------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 233 ---------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 0011111111223334444444443 37777888888888888888888888888875 3444321
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHH
Q 007530 341 -ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN---MPFDATASMWGSLLASCR 416 (600)
Q Consensus 341 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~~~ 416 (600)
..........++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 1111222345777888888888776544444325666788888889999999998883 255788888888888888
Q ss_pred HcCChHHHHHHHHHHhc
Q 007530 417 NYRNLELAEIAAKQLFG 433 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~ 433 (600)
..|+.++|.+++++.+.
T Consensus 382 ~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 89999999999888765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-10 Score=109.57 Aligned_cols=353 Identities=10% Similarity=0.009 Sum_probs=227.8
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC----CCCcchHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP----QRCIVSWN 103 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~ 103 (600)
-.|-+..|++.++.+.++-...+.|++++..-.......+..++|.+|.+-+-.-. .++..+|. .||..|+|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 33445678888998888888888888888877766667888888888865433222 45555554 48999999
Q ss_pred HHHHHHHcCCChhH----HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHH-HHHHHHHHHHh--C--C----CCCh
Q 007530 104 TIIGSYTTNGREQE----AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE-CKQLHVFALKA--A--M----DRNV 170 (600)
Q Consensus 104 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~--g--~----~~~~ 170 (600)
+++++.++.|+++. |++++.+|++-| +.|...+|..++..+.+.++..+ +..+...+... | + +.|.
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 99999999888764 566778888888 88999999888888887777644 44444444432 2 2 2244
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPER-----------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 239 (600)
..+..-++.|....+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 55667777888888888888775443321 2234556677778888888888888888877777888888
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHh--cCC
Q 007530 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR--HAR 317 (600)
Q Consensus 240 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~ 317 (600)
..++.|....+.++...+++..++..|.........-++..+++..- .|+...-.-+=..+++ ..-
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHH
Confidence 88999888888888888888888887754444443333333333220 1221111111111111 001
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH---HHHHHhcCCHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM---IDILGRAGLIHEAYD 394 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~ 394 (600)
.+.....-.+|.+..+. ....+.++-.+.+.|..++|.++|..+.++.+-.|.....++| ++.-.+......|..
T Consensus 505 ~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 11112223344444333 3445555556778888888888888886555544544455544 444456667777777
Q ss_pred HHHcC
Q 007530 395 LILNM 399 (600)
Q Consensus 395 ~~~~m 399 (600)
.++-|
T Consensus 583 ~lQ~a 587 (625)
T KOG4422|consen 583 VLQLA 587 (625)
T ss_pred HHHHH
Confidence 77666
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-10 Score=116.73 Aligned_cols=286 Identities=11% Similarity=-0.074 Sum_probs=171.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--CC--HHHHHHHHHHHHhCCCHHHHHH
Q 007530 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RN--EVTWSSMVAGFVQNELYEEALI 222 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d--~~~~~~li~~~~~~g~~~~A~~ 222 (600)
..|+++.|++.+....+....| ...+-....++.+.|+.+.|.+.|.+..+ |+ ....-.....+.+.|+++.|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3466666666666555543221 22223334555566666666666665422 22 1222233555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH
Q 007530 223 LFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV 302 (600)
Q Consensus 223 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 302 (600)
.++++.+.. +-+...+..+...+...|+++.+.+++..+.+.+..+.......-.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~------------------------ 229 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ------------------------ 229 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH------------------------
Confidence 666666543 2233445555555666666666666666665554221111111000
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH-HH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAG---LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SC 378 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~ 378 (600)
..| .++...+..+++.+.+..+.... .+.+...+..+...+...|+.++|.+.+++..+.. |+.... -.
T Consensus 230 ~a~----~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~ 302 (409)
T TIGR00540 230 KAE----IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLP 302 (409)
T ss_pred HHH----HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhH
Confidence 111 11122233333444555554432 11377788888899999999999999999998643 433210 01
Q ss_pred HHHHH--HhcCCHHHHHHHHHcC-CCCCC-H--HHHHHHHHHHHHcCChHHHHHHHH--HHhcCCCCCcchHHHHHHHHH
Q 007530 379 MIDIL--GRAGLIHEAYDLILNM-PFDAT-A--SMWGSLLASCRNYRNLELAEIAAK--QLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 379 li~~~--~~~g~~~~A~~~~~~m-~~~p~-~--~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~ 450 (600)
++..+ ...++.+.+.+.+++. ...|+ + ....++...+.+.|++++|.+.++ ...+..|++. .+..++.++.
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~ 381 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFD 381 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHH
Confidence 33333 3357788888888765 33343 3 567789999999999999999999 5777888754 5779999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007530 451 ANRRWEEVARARKLIR 466 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~ 466 (600)
+.|+.++|.+++++..
T Consensus 382 ~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSL 397 (409)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-11 Score=121.28 Aligned_cols=274 Identities=9% Similarity=-0.001 Sum_probs=196.3
Q ss_pred cCCHHHHHHHHccCCCC--CHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCchHHHHH
Q 007530 183 CGLISDASRVFESMPER--NEVTWSSM-VAGFVQNELYEEALILFRRAQVLGLEYNQFTIS--SVICACAGLAALIQGKQ 257 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~~--d~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~ 257 (600)
.|+++.|++.+...++. ++..+..+ .....+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765543 22223222 34446778888888888887653 45543332 23456677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC---H--------hHHHHHHHHHHhcCChHHHHHHHH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN---V--------VLWNTMISGFSRHARSVEVMILFE 326 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~ 326 (600)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 5567778888888888888888888887776421 1 133344444444555666677777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-C
Q 007530 327 KMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-T 404 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 404 (600)
.+.+. .+.+......+..++...|+.++|.+.++...+ ..|+.... ++.+....++.+++.+.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345677888889999999999999999998874 24554322 233334559999999988877 3345 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+....++...|...+++++|...++++++..|++ ..+..++.++.+.|+.++|...+++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6678889999999999999999999999999986 467899999999999999999988654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-12 Score=124.74 Aligned_cols=243 Identities=13% Similarity=0.069 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHH-HHH
Q 007530 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGSNMFAASSLVDMYAKCGCVVD-AYF 292 (600)
Q Consensus 216 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~-A~~ 292 (600)
+.++|+..|...... +.-+......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 355666666653322 22233444455566666666666666666665532 11234444444332221111111 111
Q ss_pred HHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 007530 293 VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371 (600)
Q Consensus 293 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 371 (600)
+. .+....+.+|-++...|.-+++.+.|++.|++... +.| ...+|+.+..-+.....+|.|...|+..+ ..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 11 12233456677777777766777777777766665 344 45556555555555666666666666554 23
Q ss_pred cHHHHHHH---HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 372 NVFHYSCM---IDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 372 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
|..+|+++ .-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.|+|++++++++.++|.++-.-..-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 33455543 33456666777776666665 4444 3455555566666666677777777777777776666666666
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 007530 447 NIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 447 ~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.++...+++++|...++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 666666777777766666654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-09 Score=109.68 Aligned_cols=521 Identities=13% Similarity=0.095 Sum_probs=342.6
Q ss_pred HHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccC---CCCCcchHHHHHHHHHcCCChhHH
Q 007530 42 SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM---PQRCIVSWNTIIGSYTTNGREQEA 118 (600)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
.+++ |+++.|..++..+++.. +.....|-.|...|-..|+.+++...+--. ...|..-|-.+-.-..+.|.+++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3444 99999999999999876 667889999999999999999998877543 345778899999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHHcCCHHHHHHHHc
Q 007530 119 VALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA----LLDVYAKCGLISDASRVFE 194 (600)
Q Consensus 119 ~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~ 194 (600)
.-.|.+.++. -|++...+---...|-+.|+...|...+.++....++.|..-... .+..|...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998 477777777778889999999999999999998865444333333 4566777788899999888
Q ss_pred cCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH----------------------H----HHH
Q 007530 195 SMPE--R---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI----------------------S----SVI 243 (600)
Q Consensus 195 ~m~~--~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~----~ll 243 (600)
.... . +...+|.++..|.+...++.|......+......+|..-+ . -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7664 2 4557889999999999999999999888762222222111 1 122
Q ss_pred HHHHccCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC----cCHhHHHHHHHHHHhcCC
Q 007530 244 CACAGLAALIQGKQVHAVLCKTG--FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE----KNVVLWNTMISGFSRHAR 317 (600)
Q Consensus 244 ~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~ 317 (600)
-++.+....+....+.....+.. ...+...|.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33456666677777777777776 344677889999999999999999999998874 367899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH-------HhcCCCccHHHHHHHHHHHHhcCCH
Q 007530 318 SVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMV-------KQHNVLPNVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~~ 389 (600)
.++|++.|+..... .|+. ..-..|-..+.+.|+.++|.+.+..+. +..+..|+.....-..+.|...|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999884 5553 344556667889999999999998853 1223456666666677888889988
Q ss_pred HHHHHHHHcCC--------C-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------hcCCC
Q 007530 390 HEAYDLILNMP--------F-----------------DATASMWGSLLASCRNYRNLELAEIAAKQL--------FGMEP 436 (600)
Q Consensus 390 ~~A~~~~~~m~--------~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~p 436 (600)
++=.+....|- + ........+...+-.+.++....+.....- ..+.-
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 77444333320 1 111112222333333333322222111111 11111
Q ss_pred CCc-chHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCc-----eEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCc
Q 007530 437 DNA-GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKS-----KSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYK 510 (600)
Q Consensus 437 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 510 (600)
++- ..+.-++..+.+.+++++|..+...+.+..+-..+. .-|..+.......+...++..++.++...+.. ..
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~-~~ 701 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY-LD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh-hh
Confidence 111 244467778899999999999988887654321111 11222222233455566665555554432211 11
Q ss_pred cCCccccc-ccc-hhHHhhHhhHHHHHHHHHHccccCCCC-CcEEEE--ecccccCCchhHHHHHhh
Q 007530 511 PETEHDLH-DVE-DSRKQELLIHHSEKLALTFGLMCLCPG-VPIRIM--KNLRICGDCHSFMKFASR 572 (600)
Q Consensus 511 pd~~~~~~-~~~-~~~~~~~l~~h~~~~a~~~~~~~~~~~-~~~~~~--~~~~~c~~~~~a~~~~~~ 572 (600)
|-...... .+. --...+..++|-..++. +.+.+.+ .+++++ -|+-+|+.-..|+..-..
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~---~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRL---LVKNKDDTPPLALIYGHNLFVNASFKHALQEYMR 765 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCccCCcceeeeechhHhhccchHHHHHHHHH
Confidence 11110000 111 01223333566555552 2233333 344433 556777777777765543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-09 Score=105.29 Aligned_cols=421 Identities=10% Similarity=0.011 Sum_probs=279.0
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHc--cCCCCCcchHHHHHHHHHc
Q 007530 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFD--EMPQRCIVSWNTIIGSYTT 111 (600)
Q Consensus 34 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~~~~ 111 (600)
.-+..+++-+.....+..|.-+-+++...+ .|+...--+.++|.-.|..+.|..+.. .+.+.|.........++.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 334445554444555555555555554433 344444445566666666666666654 3445677777777777777
Q ss_pred CCChhHHHHHHH----HHHHc--------CCCCCChhh----HHH-------HHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 007530 112 NGREQEAVALFI----NMLRE--------GKTPYSEFT----VSS-------VLCACAAKRDVFECKQLHVFALKAAMDR 168 (600)
Q Consensus 112 ~g~~~~A~~~~~----~m~~~--------g~~~p~~~t----~~~-------ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 168 (600)
..++++|+.++. .+..- +.+.+|..- -+. -...+....+.++|+..+.+++...
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D--- 171 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD--- 171 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc---
Confidence 777777777776 22110 001111111 001 1123344455666666666655542
Q ss_pred ChhHHHHHHHHHHH--------------------c-CCHHHHHHHHccC----C----------------CCCHHHHHHH
Q 007530 169 NVFVGTALLDVYAK--------------------C-GLISDASRVFESM----P----------------ERNEVTWSSM 207 (600)
Q Consensus 169 ~~~~~~~li~~y~~--------------------~-g~~~~A~~~f~~m----~----------------~~d~~~~~~l 207 (600)
+..+.++...-.. + .+.+.-+.+|+-. . +.++...-.-
T Consensus 172 -~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 172 -AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred -hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 2222222111110 0 0111122222211 0 0133444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 287 (600)
..-+...+++++..+++++..+.. ++....+..-|..+...|+..+-..+-..+++. .|....+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 566778899999999999987652 455555555566777888777666666666665 377788999999999999999
Q ss_pred HHHHHHHhcCCCcC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEEKN---VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 288 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999766433 468999999999999999999999887664 22223334445556888999999999999886
Q ss_pred HhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 365 KQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMP--------FDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 365 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
++-| |+...+-+.-.....+.+.+|..+|+..- ..+ -..+|+.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 5666 56667767666777889999999987651 111 3567899999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999998765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-13 Score=128.02 Aligned_cols=254 Identities=12% Similarity=0.027 Sum_probs=78.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 184 (600)
...+.+.|++++|++++++..... .+|+...| ..+...+...++.+.|.+.++.+.+.+.. ++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 444556666666666664433331 12333333 33333444556666666666666655433 44455555555 5666
Q ss_pred CHHHHHHHHccCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 185 LISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLG-LEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 185 ~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+.++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|......+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777666655432 345556666666777777777777777665432 234555566666666667777777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
+++.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..+.. +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 76654 3345556666666666666665555544433 2344556666666666666666666666666531 23455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
....+..++...|+.++|.++...+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 55566666666666666666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-09 Score=101.89 Aligned_cols=324 Identities=12% Similarity=0.061 Sum_probs=193.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHH-HHHHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVT-WSSMVAGFV 212 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~-~~~li~~~~ 212 (600)
|.+.+.......-..|....|...+...+.. -+..|.+-+....-.-+.+.+..+-...+..+... =--+..++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 4433333334444556666666665555443 12233333333333344444444444443321111 112334555
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhhCCHH-H
Q 007530 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLVDMYAKCGCVV-D 289 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~y~~~g~~~-~ 289 (600)
.....+++++-.......|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.--.+.++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 5556777777777776666655554444444455566777888888888777631 114556655543222222222 1
Q ss_pred HHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 290 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
|..+++ +.+--+.|..++.+-|.-.++.++|...|++..+. .|. ...|+.+..-|....+...|++-++.++ .
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---d 392 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---D 392 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---h
Confidence 222222 22223344555566667777778888888877764 343 3455556667777777888888887776 3
Q ss_pred CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 369 VLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 369 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+.| |-..|-.|.++|.-.+...=|+-+|++. ..+| |...|.+|...|.+.++.++|++.+.+++.....+...+..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 334 6667777778888788877787777776 3444 567788888888888888888888888877666566777788
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 007530 446 SNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 446 ~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+++|.+.++.++|...++.-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888777766654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-09 Score=100.49 Aligned_cols=376 Identities=12% Similarity=0.066 Sum_probs=220.0
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC--CCCcchHHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP--QRCIVSWNTIIGSY 109 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 109 (600)
+...+...+..-.+...+..|+.++++.+..-...|. .|-..+.|=-..|++..|+++|+.-. +|+...|++.|..=
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4455666666666777788888888887765322333 33344445556688888888888643 58999999999998
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHHcCCHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AM-DRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~ 187 (600)
.+...++.|..+|++..- +.|+..+|.--.+.--+.|+...++.++..+++. |- ..+...+.+....=.++..++
T Consensus 185 lRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 5689999988888888899999999999988775 21 112334555555555666777
Q ss_pred HHHHHHc----cCCCC-------------------------------------------CHHHHHHHHHHHHhCCCHHHH
Q 007530 188 DASRVFE----SMPER-------------------------------------------NEVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 188 ~A~~~f~----~m~~~-------------------------------------------d~~~~~~li~~~~~~g~~~~A 220 (600)
.|.-+|+ .+++. |-.+|--.+..--..|+.+..
T Consensus 262 Rar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~I 341 (677)
T KOG1915|consen 262 RARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRI 341 (677)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHH
Confidence 7776654 23321 222344444444445566666
Q ss_pred HHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hhCC
Q 007530 221 LILFRRAQVLGLEYNQ-------FTISSVICAC---AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA----KCGC 286 (600)
Q Consensus 221 ~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~----~~g~ 286 (600)
.++|++.... ++|-. ..|.-+=.+| ....+.+.++++++..++ =+|....++.-+=-+|+ ++.+
T Consensus 342 re~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~ 419 (677)
T KOG1915|consen 342 RETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLN 419 (677)
T ss_pred HHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcc
Confidence 6666555533 33311 1111111111 234455555666655555 23334444444433333 4455
Q ss_pred HHHHHHHHhcCC--CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIE--EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 287 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
+..|++++.... .|-..++-..|..-.+.++++.+..++++..+-+ +-|..++......-...|+.+.|..+|..++
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 566666655443 2444555555555555566666666666665532 2244455555555555566666666666655
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLAS 414 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 414 (600)
.+..+......|.+.|+-=...|.++.|..+++++ ...+...+|-++...
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 43333333344555555555566666666666554 223444555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-11 Score=119.31 Aligned_cols=273 Identities=11% Similarity=-0.013 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007530 151 VFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE------RNEVTWSSMVAGFVQNELYEEALILF 224 (600)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~ 224 (600)
..+|...|....+. ..-+..+..-+..+|...+++++|+++|+.+.+ .+...|.+.+-.+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45566666663333 233446666777777777777777777777654 2566676666543321 122222
Q ss_pred H-HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh
Q 007530 225 R-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV 303 (600)
Q Consensus 225 ~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~ 303 (600)
. .+... -+-.+.||-++.+.|+-+++.+.|.+.|+++++.+ +...++|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 22221 12334556666655555556666665555555442 224455555555555555555555555555544444
Q ss_pred HHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 007530 304 LWNT---MISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379 (600)
Q Consensus 304 ~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 379 (600)
.||+ +...|.+.++++.|+-.|++..+ +.| |.+....+...+.+.|+.|+|+++++++.. +.|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~-------- 554 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDP-------- 554 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCC--------
Confidence 3333 33345555555555555555444 223 223333334444444555555555554431 122
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 380 IDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
.|+..--.-...+...+++++|.+.++++.++-|++...|.+++.+|.+.|+.+.|.
T Consensus 555 -----------------------kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 555 -----------------------KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -----------------------CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 122222222333334455555555555555555555555555555555555555555
Q ss_pred HHHHHhh
Q 007530 460 RARKLIR 466 (600)
Q Consensus 460 ~~~~~m~ 466 (600)
.-|.-+.
T Consensus 612 ~~f~~A~ 618 (638)
T KOG1126|consen 612 LHFSWAL 618 (638)
T ss_pred HhhHHHh
Confidence 5554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=111.34 Aligned_cols=213 Identities=12% Similarity=0.034 Sum_probs=168.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
-.|+.-.+.+-++.+++.... +...|--+..+|....+.++-.+.|+.... .|..+|..-...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357788888888888887533 333366677789999999999999997763 3556666666666667889999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC
Q 007530 325 FEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD 402 (600)
Q Consensus 325 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 402 (600)
|++.+.. .|+ ...|..+--+..+.+.++++...|++.++++ +-.++.|+-....+...++++.|.+.|+.. ..+
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999874 554 5677777777778999999999999997654 556778999999999999999999999875 334
Q ss_pred CC---------HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 403 AT---------ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 403 p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
|+ +.+-.+++..- -.+++..|..+++++++++|.....|..|+.+-.+.|+.++|+++|+.-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 22223333332 23899999999999999999988999999999999999999999998754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=111.67 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=144.8
Q ss_pred hhhchhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHcc
Q 007530 14 KSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDE 93 (600)
Q Consensus 14 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 93 (600)
+.+....+..++..|+.|+.+||.+++..|+..|+.+.|- +|..|.-..++....+++.++......++.+.+.
T Consensus 6 kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 6 KFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred ccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 3444566788889999999999999999999999999888 9998887777777778888888877777766554
Q ss_pred CCCCCcchHHHHHHHHHcCCChhHHHHHHHH-HHH-------cC----------------CCCCChhhHHH---------
Q 007530 94 MPQRCIVSWNTIIGSYTTNGREQEAVALFIN-MLR-------EG----------------KTPYSEFTVSS--------- 140 (600)
Q Consensus 94 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g----------------~~~p~~~t~~~--------- 140 (600)
+|...+|..|..+|.+.|+... ++.-++ |.. .| ..-||..+...
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6777788888888888887643 222222 211 11 01122222111
Q ss_pred -HHHHHhc------CC-----------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC---
Q 007530 141 -VLCACAA------KR-----------DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER--- 199 (600)
Q Consensus 141 -ll~~~~~------~~-----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--- 199 (600)
+++.... .+ +..-.+++.....+..-.|++.++.++++.-.-.|+++.|..++.+|.++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 1111100 00 01111222222211111467777888888888888888888888888764
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007530 200 -NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251 (600)
Q Consensus 200 -d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 251 (600)
+..-|-.++-+ .++...+..+++-|...|+.|+..|+..-+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 22333344443 67777777777788888888888888877777766444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-10 Score=101.06 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=136.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCC--ChhHHHHHHHHHHHcCCHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA-MDR--NVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~ 188 (600)
+.++++|+++|-+|.+. -+.+..+-.++.+.+.+.|..+.|..+|..+.++. .+- -..+.-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 47889999999999885 34455566778888999999999999999888762 111 12344567888999999999
Q ss_pred HHHHHccCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCchHHHHHHHHH
Q 007530 189 ASRVFESMPERN---EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT----ISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 189 A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
|+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-++..+- |.-+........+.+.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988743 44677789999999999999999999888765554332 33333344445566666666666
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH----hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----VLWNTMISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++.+..+.++.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65543 22222333344444444444444444444433222 1233333444444444444444444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-09 Score=101.65 Aligned_cols=286 Identities=14% Similarity=0.051 Sum_probs=199.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
.|+|.+|.++..+-.+.+ +-....|..-..+.-..||.+.+-.++.++.+....++..+.-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 589999999998877775 223455666777788899999999999999887667788888888889999999999888
Q ss_pred HHccCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 192 VFESMP---ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 192 ~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
-.++.. .++..........|.+.|++.+...++.+|.+.|+-.|...- ++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH----------
Confidence 776654 467888999999999999999999999999988865443211 00
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
...+++.+++-....+..+.-...++..+ +.++..--+++.-+.+.|+.++|.++..+..+.+..|+-. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 01122223332222222233333444443 2345555666777778888888888888888877766622 233
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a 424 (600)
.+.+.++.+.-++..+...+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++...|+..+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 45667777777777777666665555 46667777777777777777777754 5667777777777777777777777
Q ss_pred HHHHHHHhc
Q 007530 425 EIAAKQLFG 433 (600)
Q Consensus 425 ~~~~~~~~~ 433 (600)
.+..++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 777776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=104.33 Aligned_cols=392 Identities=10% Similarity=0.051 Sum_probs=248.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCC----CCcch-HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh----HHH
Q 007530 70 TSNILINFYSKCGLISGARKVFDEMPQ----RCIVS-WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFT----VSS 140 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t----~~~ 140 (600)
+...|..-|.......+|+..++-+.+ ||.-. --.+-..+.+...+.+|+++|+..+.+- ...+..+ .+.
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv-psink~~rikil~n 281 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhh
Confidence 334455666666677777777765543 23221 2234456667777888888887776652 1122223 333
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC----------------CCHHHH
Q 007530 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE----------------RNEVTW 204 (600)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------------~d~~~~ 204 (600)
+.-.+.+.|.++.|...|++..+. .|+..+.-.|+-.+.--|+-++..+.|..|.. ||....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 334466778888888888888775 45666655666667777888888888877642 222333
Q ss_pred HHHH-----HHHHhCC--CHHHHHHHHHHHHHcCCCCCHHH-HH----H--------H--------HHHHHccCchHHHH
Q 007530 205 SSMV-----AGFVQNE--LYEEALILFRRAQVLGLEYNQFT-IS----S--------V--------ICACAGLAALIQGK 256 (600)
Q Consensus 205 ~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-~~----~--------l--------l~a~~~~g~~~~a~ 256 (600)
|.-| .-.-+.+ +.++++-.--++...-+.||-.. +. + + ..-+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 3222 2222221 22333333333333333343211 00 0 0 12256788888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHH------------------------------------HhhCCHHHHHHHHhcCCCc
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMY------------------------------------AKCGCVVDAYFVFSGIEEK 300 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y------------------------------------~~~g~~~~A~~~~~~~~~~ 300 (600)
+++....+..-.......+.|-..+ ...|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 8887776654322222222221111 1346777777777777766
Q ss_pred CHhHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHH
Q 007530 301 NVVLWNTMIS---GFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHY 376 (600)
Q Consensus 301 ~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 376 (600)
|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++.... .+.| |+...
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~il 595 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAIL 595 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHH
Confidence 6554444433 356678899999999887653 34466677788888888899999999987764 4444 78889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
+.|.+.|-+.|+-..|.+..-+- . ++.+..+..-|..-|....-.+.+...|+++.-+.|+.......++..+-+.|+
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 99999999999999998875433 3 234555555566666667778999999999999999876666677778889999
Q ss_pred hHHHHHHHHHhhhC
Q 007530 455 WEEVARARKLIRDS 468 (600)
Q Consensus 455 ~~~a~~~~~~m~~~ 468 (600)
+..|..+++....+
T Consensus 676 yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=123.75 Aligned_cols=264 Identities=14% Similarity=0.135 Sum_probs=199.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC
Q 007530 222 ILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN 301 (600)
Q Consensus 222 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~ 301 (600)
.++-.|...|+.|+.+||.++|.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9999999999999999999999999999887665 788
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..+|+.+..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8999999999999999765 333222 2333455566666666666666654333455566544 556
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 007530 382 ILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
...-.|.++.+.+++..+|..........+++-+.. ...+++-....+...+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 667788899999999988743221122223555544 3445555555555555 44 46788999999999999999999
Q ss_pred HHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCCccCCcccc
Q 007530 461 ARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKPETEHDL 517 (600)
Q Consensus 461 ~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 517 (600)
+...|+++|++..+...|-++-|.... .-++.+.+-|++.|+.|+..+..
T Consensus 226 ll~emke~gfpir~HyFwpLl~g~~~~-------q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLGINAA-------QVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhcCccc-------hHHHHHHHHHHHhcCCCCcchhH
Confidence 999999999999999999887774322 34456788899999999977653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-10 Score=105.13 Aligned_cols=197 Identities=11% Similarity=-0.047 Sum_probs=155.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888888888888888876653 346677888888888999999999999888753 3345667777888
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a 424 (600)
+...|++++|.+.++.+.+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988753222234556777888889999999999998876 3233 466788888888999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888888999999999999998877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.9e-12 Score=85.01 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=47.1
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-12 Score=84.90 Aligned_cols=50 Identities=24% Similarity=0.499 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 199 RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG 248 (600)
Q Consensus 199 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 248 (600)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-09 Score=107.24 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhhCCHHHHHHHHhcCCC----------
Q 007530 237 FTISSVICACAGLAALIQGKQVHAVLCKT-----GF-GSNM-FAASSLVDMYAKCGCVVDAYFVFSGIEE---------- 299 (600)
Q Consensus 237 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~~~~---------- 299 (600)
.|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777888888888877777664 21 1222 2234466778888888888888876642
Q ss_pred c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcC--C
Q 007530 300 K-NVVLWNTMISGFSRHARSVEVMILFEKMQQA-----GLH-PNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHN--V 369 (600)
Q Consensus 300 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 369 (600)
| -..+++.|...|.+.|++++|..++++..+- |.. |.. .-++.+...|...+.+++|..+++...+.+- +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2356777777888889888888887766441 222 222 2456677788899999999999988765443 2
Q ss_pred Cc----cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc--
Q 007530 370 LP----NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG-- 433 (600)
Q Consensus 370 ~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 433 (600)
.+ -..+++.|...|...|++++|++++++. ...+. ...++.|..+|...+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2457899999999999999999999876 11222 45778899999999999999999988765
Q ss_pred --CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 434 --MEP---DNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 434 --~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..| +...+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334 445578899999999999999999987765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-07 Score=89.38 Aligned_cols=367 Identities=13% Similarity=0.031 Sum_probs=236.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHH-HHHHHHHcCC-ChhHHH--------------HHHHHHHHcC---
Q 007530 69 LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN-TIIGSYTTNG-REQEAV--------------ALFINMLREG--- 129 (600)
Q Consensus 69 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g-~~~~A~--------------~~~~~m~~~g--- 129 (600)
..--..+..|...++-++|.....+.+..-...-+ .|+.-+-+.| +-.++. ..+.-..+.+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 34456677888888999999998888764333333 3333333332 211222 2222222211
Q ss_pred -----------CCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 130 -----------KTPYSEFTVSSVLCACA--AKRDVFECKQLHVFALKA-AMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 130 -----------~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
.++|+..+...-+.+++ -.++-..+.+.+..+.+. -++.|+....++.+.|...|+.++|+..|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 02233333333344333 234444444444444333 3666788888999999999999999999988
Q ss_pred CCCCCHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchh
Q 007530 196 MPERNEVTWSSM---VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272 (600)
Q Consensus 196 m~~~d~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (600)
...-|+.+...| .-.+.+.|+++....+...+.... +-....|..-+.......+++.|..+-...++.. +.+..
T Consensus 258 ~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~ 335 (564)
T KOG1174|consen 258 TLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHE 335 (564)
T ss_pred HhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccch
Confidence 765444433332 233457788888888777776432 1222233333333445566777777776666654 33344
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC--C-cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIE--E-KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL-SACS 348 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~ 348 (600)
.+-.-...+...|+.++|.-.|+... . -+..+|..++.+|...|++.+|..+-+...+. +..+..+...+. ..|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 44444566777889999988888654 2 47889999999999999999998887776654 444556655442 2332
Q ss_pred -ccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 007530 349 -HIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 349 -~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~ 425 (600)
....-++|.++++.-. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|...++..+.+.+|.
T Consensus 415 ~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred cCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 2334578888888765 45665 445667778888899999999999876 66789888999999999999999999
Q ss_pred HHHHHHhcCCCCCcch
Q 007530 426 IAAKQLFGMEPDNAGN 441 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~ 441 (600)
..|..++.++|++..+
T Consensus 492 ~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHhcCccchHH
Confidence 9999999999987643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-08 Score=94.78 Aligned_cols=273 Identities=11% Similarity=0.067 Sum_probs=160.4
Q ss_pred CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 184 GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 184 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
|++.+|+++..+-.+ ..+..|..-+.+--+.|+.+.+-.++.+.-+.--.++...+.+........|+++.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 555566555544322 22333444444455556666666655555443222333333344444455555555555555
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc-----------CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-----------NVVLWNTMISGFSRHARSVEVMILFEKMQ 329 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 329 (600)
.+.+.+ +-++.+.......|.+.|++.....+...+.+. -..+|+.++.-....+..+.-...|++.-
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 555544 344555555566666666666666666555542 12356666665555555555455565554
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHcCCCCCCH
Q 007530 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE----AYDLILNMPFDATA 405 (600)
Q Consensus 330 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~p~~ 405 (600)
.. .+-+...-.+++.-+...|+.++|.++..+..+ .+..|+.. .++ ...+-++.+. ++...+..|.. +
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~--p 328 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPED--P 328 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCC--h
Confidence 43 344455556667777788888888888877764 35555511 111 1223344333 33333444433 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..+.+|...|.+++.+.+|...++.++...|+ ...|..++.++.+.|+..+|..++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 77888888888888888888888888888886 4688888888888888888888887665
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-06 Score=84.21 Aligned_cols=92 Identities=10% Similarity=0.126 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC----------------
Q 007530 33 LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---------------- 96 (600)
Q Consensus 33 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------- 96 (600)
...|...++-....+-++.+..++++.++. ++..-+-.|..+++.+++++|-+.+.....
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 345555666666666677777777777643 344467777888888888888877766542
Q ss_pred ----------CC----------------------cchHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 007530 97 ----------RC----------------------IVSWNTIIGSYTTNGREQEAVALFINMLRE 128 (600)
Q Consensus 97 ----------~~----------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 128 (600)
|+ ...|++|.+-|.+.|.++.|.++|++.+..
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 11 125999999999999999999999887764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-07 Score=91.95 Aligned_cols=218 Identities=12% Similarity=0.018 Sum_probs=172.6
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHH
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 290 (600)
+.-.|+...|...|+........++.. |.-+..+|....+.++..+.|..+.+.+ +.+..+|-.-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 455788999999999988764333332 7777778999999999999999999876 56777888888899999999999
Q ss_pred HHHHhcCCCc---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 007530 291 YFVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367 (600)
Q Consensus 291 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 367 (600)
..-|++...- ++..|--+-.+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999987753 4566666666777888999999999999886 555567888889999999999999999999873
Q ss_pred CCCcc---------HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 368 NVLPN---------VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 368 ~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
+.|+ +.+-.+++-.- -.+++..|.+++++. .+.|. ...+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333 11222222222 238999999999987 55554 6789999999999999999999999987754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-06 Score=85.70 Aligned_cols=405 Identities=12% Similarity=0.097 Sum_probs=207.4
Q ss_pred HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHH--HHHHH--HcCCCh
Q 007530 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNT--IIGSY--TTNGRE 115 (600)
Q Consensus 40 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~--~~~g~~ 115 (600)
+.-....+++++|.+....++..+ +-|...+..=+-+..+.+.+++|+++.+.-..- .+++. +=.+| .+.++.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 344555667777777777777655 444555555555556667777777655443211 11222 12333 355667
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHHcCCHHHHHHHHc
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD-RNVFVGTALLDVYAKCGLISDASRVFE 194 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~ 194 (600)
++|+..++-. -+.|..+...-...|-+.++++++..++..+.+.+.+ .+...-..++.+-.. -.+. +.+
T Consensus 96 Dealk~~~~~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLKGL-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ 165 (652)
T ss_pred HHHHHHHhcc-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence 7777666611 2223334555555566677777777777777665432 111111111111000 0110 122
Q ss_pred cCCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHHcC-------------CCCCHHH-HHHHHHHHHccCchHHHHH
Q 007530 195 SMPERNEVTWSS---MVAGFVQNELYEEALILFRRAQVLG-------------LEYNQFT-ISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 195 ~m~~~d~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~a~~ 257 (600)
..+.....+|.. ....++..|++.+|+++++...+.+ +.-+..+ -.-+.-.+-..|+-.+|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 222211112211 1223344444444444444441100 0000000 0111222233444444444
Q ss_pred HHHHHHHhCCCC--------------------------------------------------chhHHHHHHHHHHhhCCH
Q 007530 258 VHAVLCKTGFGS--------------------------------------------------NMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 258 ~~~~~~~~~~~~--------------------------------------------------~~~~~~~l~~~y~~~g~~ 287 (600)
++..+++..... ....-+.++.+|. +..
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~ 323 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKM 323 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhH
Confidence 444444433111 1111223333332 233
Q ss_pred HHHHHHHhcCCCcC-HhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHH-
Q 007530 288 VDAYFVFSGIEEKN-VVLWNTMISGFS--RHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSHIGMVEKGKSYFD- 361 (600)
Q Consensus 288 ~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~- 361 (600)
+.++++-...+... ...+.+++.... +...+.+|.+++...-+. .|.. +.....+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444444444322 233444443322 233467777877776654 3443 333444555677899999999998
Q ss_pred -------HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 007530 362 -------LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--------PFDAT-ASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 362 -------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~ 425 (600)
.+. +.+..|. +..+++.+|.+.++.+.|..++.+. +..+. ..+|.-+...-.++|+-++|.
T Consensus 402 ~~~~~~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 443 3344444 5667888888888766665555443 22222 245555555566789999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
..++++++.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999999876 566666654433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-08 Score=90.20 Aligned_cols=292 Identities=13% Similarity=0.081 Sum_probs=155.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-CC------HHHHHHHHHHHHhCCCHHHH
Q 007530 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RN------EVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~d------~~~~~~li~~~~~~g~~~~A 220 (600)
..+.++|...|-+|.+.... +..+.-+|.+.|-+.|..|.|+++-+.+.+ || ..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35678888888888875432 555667788888888888888888877665 33 22344566778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 221 LILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNM----FAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 221 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
.++|..+.+.| .--......++..|-...+|++|..+-..+.+.+-.+.. ..|.-|...+....+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~---------- 195 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD---------- 195 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh----------
Confidence 88888887654 223345566777777777888888777777776543321 122333333333344
Q ss_pred CCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 007530 297 IEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 297 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--.++
T Consensus 196 ---------------------~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ev 251 (389)
T COG2956 196 ---------------------VDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEV 251 (389)
T ss_pred ---------------------HHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHH
Confidence 44444444444442 12211 1112233344445555555555544322 21222334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH--Hhc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY--AAN 452 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~ 452 (600)
...|..+|...|+.++...++.++ ...+....-..+-.......-.+.|...+.+-+...|+--..|-.+-.-. +..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 444444555555555555544443 22223322233333333333344455555555555554322222222111 233
Q ss_pred CChHHHHHHHHHhhhCCCccCCc
Q 007530 453 RRWEEVARARKLIRDSEVKKEKS 475 (600)
Q Consensus 453 g~~~~a~~~~~~m~~~~~~~~~~ 475 (600)
|++.+-...+..|....++..|.
T Consensus 332 g~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 332 GRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cchhhhHHHHHHHHHHHHhhcCC
Confidence 45666666677776555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=95.42 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=79.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
.+..+...+...|++++|.+.|++..+. .|.+...+..+...+...|+++.|...+...++.... +...+..+...|
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 4444555555555555555555555543 2333444455555555555555555555555554322 334444555555
Q ss_pred HHcCCHHHHHHHHccCCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 181 AKCGLISDASRVFESMPE-----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
...|++++|.+.|++... .....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555432 122344445555555555555555555554431 11233344444444455555555
Q ss_pred HHHHHHHHHh
Q 007530 256 KQVHAVLCKT 265 (600)
Q Consensus 256 ~~~~~~~~~~ 265 (600)
...+....+.
T Consensus 189 ~~~~~~~~~~ 198 (234)
T TIGR02521 189 RAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHh
Confidence 5555444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-08 Score=97.42 Aligned_cols=257 Identities=12% Similarity=0.034 Sum_probs=167.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
..-.-..-+...+++.+..++++...+. .|+....+..-|.++...|+..+-..+-..+++.- +....+|-++.--|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 3344445566788999999999999887 56777777777778888888877777777777764 44778889998888
Q ss_pred HHcCCHHHHHHHHccCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 181 AKCGLISDASRVFESMPERN---EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 88899999999998766533 457999999999999999999888776543 11111122223335677888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc----------CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK----------NVVLWNTMISGFSRHARSVEVMILFEK 327 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 327 (600)
+|.++.... |.|+.+.+-+.-++...+.+.+|...|+....+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 888887764 567777777777777777777777777644310 112234444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 328 MQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 328 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
.... .+-|..|+.++.-.|...|+++.|...|.+.
T Consensus 481 aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 481 ALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4433 1223344444444444444444444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-08 Score=105.94 Aligned_cols=174 Identities=11% Similarity=-0.017 Sum_probs=82.7
Q ss_pred HHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 186 ISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 186 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
+++|...+++..+ .+..+|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+..+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555554433 234455555555555555555555555555432 112334444445555555555555555555
Q ss_pred HHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
++..- .+...+..++..+...|++++|...+++... | +...+..+...|...|+.++|...+.++... .|+..
T Consensus 399 l~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 399 LKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred HhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 55431 1222222233334445556666655554421 2 2334455555555666666666666655432 33333
Q ss_pred HHHH-HHHHHHccCCHHHHHHHHHHHHH
Q 007530 339 TYIS-VLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 339 t~~~-ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+... +...+...| +++...++.+.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3322 222334444 355555555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-08 Score=98.41 Aligned_cols=236 Identities=12% Similarity=0.102 Sum_probs=152.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC----------CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE----------RNEV-TWSSMVAGFVQNELYEEALILFRRAQVL---GLEYN 235 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 235 (600)
..+...|..+|...|+++.|+.+|+...+ +.+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455577777777777777777665432 2222 2334667788889999999998888642 11122
Q ss_pred ----HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC---CCcCHh-HHHH
Q 007530 236 ----QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVV-LWNT 307 (600)
Q Consensus 236 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~---~~~~~~-~~~~ 307 (600)
..++..+..+|.+.|++++|...++.+.+- +... ..+.+. ..+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSE 330 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHH
Confidence 234445555566666666666665554431 1110 012222 2444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhc----C-CCc-cHH
Q 007530 308 MISGFSRHARSVEVMILFEKMQQA---GLHPN----EQTYISVLSACSHIGMVEKGKSYFDLMVKQH----N-VLP-NVF 374 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~ 374 (600)
++..+...+++++|..+++...+. -+.++ ..++..+...|.+.|++++|.++|+.++... + ..+ .-.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 555666777777777777665442 12333 3478888888889999999999888876543 1 122 244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM--------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
.++-|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|.++.+++..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6777888888888888888887764 34555 46899999999999999999999999874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-06 Score=84.72 Aligned_cols=425 Identities=14% Similarity=0.124 Sum_probs=262.5
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChh
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGM-GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQ 116 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 116 (600)
..++.....+++...+..|+..++. .+.....+|...+......|-++-+.+++++-.+-+...-+--|..++..++++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 3344455566677777777766543 233344567777777777788888888888776666666777888888888888
Q ss_pred HHHHHHHHHHHcC-----CCCCChhhHHHHHHHHhcCCChHHH---HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 117 EAVALFINMLREG-----KTPYSEFTVSSVLCACAAKRDVFEC---KQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 117 ~A~~~~~~m~~~g-----~~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
+|-+.+...+... ..+.+...|.-+-...++..+.-.. ..++..+...-.+.--..|++|.+-|.+.|.++.
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 8888887765431 0234445565555555554443332 2333333332122223578999999999999999
Q ss_pred HHHHHccCCCC--CHHHHHHHHHHHHhC----------------CC------HHHHHHHHHHHHHcCC-----------C
Q 007530 189 ASRVFESMPER--NEVTWSSMVAGFVQN----------------EL------YEEALILFRRAQVLGL-----------E 233 (600)
Q Consensus 189 A~~~f~~m~~~--d~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-----------~ 233 (600)
|..+|++.... .+.-++.+..+|++- |+ ++-.+.-|+.+.+.+. +
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 99999875542 222334444443331 11 2222333333332210 0
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC-------
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTG-----FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN------- 301 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~------- 301 (600)
-+..+|..-.. ...|+..+-...+.++++.- ...-...|..+.+.|-..|+++.|+.+|++..+-+
T Consensus 347 ~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 01111211111 23455666677777777642 11224568889999999999999999999887532
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------C-C------HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLH----------P-N------EQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
...|..-...-.++.+++.|+.+.+......-. | . ...|...+..--..|-++....+++.++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 245666666667788999999998877542111 1 1 1234444444455678888888999887
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-C-CCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCC
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P-F-DAT-ASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~ 437 (600)
.-.=..|... -...-.+-....++++.+.+++- + + .|+ ...|++.+.-+.+ ...++.|..+|+++++.-|.
T Consensus 505 dLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 4433334322 22223345677899999999875 2 2 345 4689998877655 34799999999999997774
Q ss_pred Cc--chHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 438 NA--GNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 438 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.. ..|...+..-.+-|.-..|..++++..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 244455555566788888888888754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-08 Score=105.81 Aligned_cols=256 Identities=14% Similarity=0.032 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------ccCchHHHHHHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQ-----NELYEEALILFRRAQVLGLEYNQ-FTISSVICACA---------GLAALIQGKQVHAVLCK 264 (600)
Q Consensus 200 d~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~---------~~g~~~~a~~~~~~~~~ 264 (600)
+...|...+.+-.. .+.+++|+.+|++..+. .|+. ..+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555565555321 13457888888887764 4543 34444433332 22346778888887777
Q ss_pred hCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HH
Q 007530 265 TGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TY 340 (600)
Q Consensus 265 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 340 (600)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 65 45666777777777888888888888877653 2 4556777777788888888888888887774 34422 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHH
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA-SMWGSLLASCRN 417 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~ 417 (600)
..++..+...|++++|...++++.+.. .| +...+..+...|...|+.++|...++++ +..|+. ..++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 233334555677888888887775432 23 3444566677777888888888888776 334443 344444445555
Q ss_pred cCChHHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 418 YRNLELAEIAAKQLFG---MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.| +.|...++++++ ..|.++. .+..+|.-.|+-+.+... +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 55 366666666665 2333332 356666667777776666 555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-07 Score=93.68 Aligned_cols=399 Identities=14% Similarity=0.105 Sum_probs=260.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 007530 63 GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVS 139 (600)
Q Consensus 63 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~ 139 (600)
.+.-|+.+|..|.=+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-.....-++|...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567899999999999999999999999998653 3456899999999999999999999988766532345555566
Q ss_pred HHHHHHhc-CCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHHc-----------CCHHHHHHHHccCCC---CC
Q 007530 140 SVLCACAA-KRDVFECKQLHVFALKA--AM--DRNVFVGTALLDVYAKC-----------GLISDASRVFESMPE---RN 200 (600)
Q Consensus 140 ~ll~~~~~-~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~m~~---~d 200 (600)
..-+.|.. .+..+++..+-.+++.. +. ......|-.+.-+|... ....++.+.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 66666654 57778888777777763 11 11234455555555432 113345555665533 23
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
..+-.-+.--|+..++.+.|++..++....+-.-+...|..+.-.+...+++..|..+.+.....- +.|-.....-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 333333444567788899999999998887666677788877777888889999988887776531 1111100001111
Q ss_pred HHhhCCHHHHHHH-------Hh-------------------cCC----C-cC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007530 281 YAKCGCVVDAYFV-------FS-------------------GIE----E-KN-VVLWNTMISGFSRHARSVEVMILFEKM 328 (600)
Q Consensus 281 y~~~g~~~~A~~~-------~~-------------------~~~----~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 328 (600)
-...++.++|... |+ .+. + .| +.++.-+. +... -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-c
Confidence 1112333333322 11 111 0 01 11221111 1111 00000000000 1
Q ss_pred HHcCCCC--C------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 329 QQAGLHP--N------EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 329 ~~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
...-+.| + ...+......+.+.+..++|...+.+.. ++.| ....|.-....+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111222 2 1234455567788889999988777774 3334 5556777778888999999999988765
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 400 -PFDAT-ASMWGSLLASCRNYRNLELAEI--AAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 400 -~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.+.|+ +.+..++...+...|+...|.. ++..+++++|.++..|..|+.++.+.|+.++|.+.|....+-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 55665 6788999999999999888888 999999999999999999999999999999999999987654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-08 Score=95.05 Aligned_cols=211 Identities=12% Similarity=-0.005 Sum_probs=144.5
Q ss_pred CchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHH
Q 007530 250 AALIQGKQVHAVLCKTG-FGS--NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMI 323 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 323 (600)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666666432 222 245577778888899999999988887653 467889999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-
Q 007530 324 LFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P- 400 (600)
Q Consensus 324 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~- 400 (600)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99998874 554 567777778888899999999999988754 343322222223344567899999888654 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 401 FDATASMWGSLLASCRNYRNLELAEIAAKQLF-------GMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 401 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..|+ .|.. .......|+...+ ..++.+. ++.|+.+..|..++.+|.+.|++++|...|++..+.+
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2233 2321 2222335555443 2444443 3445566789999999999999999999998887655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=92.29 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=157.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 284 (600)
+.|...|.+.|.+.+|...|+.-... .|-..||..+-.+|.+..++..|..++.+-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777778888888888777776654 455556666677777777777777777666654 244444444555566666
Q ss_pred CCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 285 GCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 285 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
++.++|.++++.+.+ .++.+..++..+|.-.++++-|+.+++++...|+. +...|..+.-+|.-.+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 666666666665543 24444555555666666677777777776666643 45556666666666666666655555
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
+.... --.|+ .-..+|..+.......||+..|.+.|+-++..+|++...
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 54321 00111 124567777777778899999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 442 HLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++.|+..-.+.|+.++|..+++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999887654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-06 Score=79.89 Aligned_cols=411 Identities=13% Similarity=0.068 Sum_probs=242.1
Q ss_pred HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCh
Q 007530 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNI-LINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGRE 115 (600)
Q Consensus 40 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 115 (600)
|.-+...+++..|..+++.-...+-+.. ...+. +...|-..|++++|..++..+.+ ++...|-.|.-++.--|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4455567788888888887664432221 12233 33455678999999999986653 5667777777777777888
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
.+|..+-.. .+.++---..+....-+.++-++-..++..+... ..-.-+|.++.-..-.+.+|+.++.+
T Consensus 108 ~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888776443 2334444445555566778877777777766543 22334555655555678899999998
Q ss_pred CCC--CCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--c--CchHH--HHH---------
Q 007530 196 MPE--RNEVTWSS-MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG--L--AALIQ--GKQ--------- 257 (600)
Q Consensus 196 m~~--~d~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~--g~~~~--a~~--------- 257 (600)
+.. |+-...|. |.-.|.+..-++-+.+++.--.+. -||+ |+..-+.+|.. . |+..+ -..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 765 44445554 445677778888888887766654 3443 22222333322 1 11111 111
Q ss_pred -HHHHHHHhCC------CCc-----------hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCC--
Q 007530 258 -VHAVLCKTGF------GSN-----------MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHAR-- 317 (600)
Q Consensus 258 -~~~~~~~~~~------~~~-----------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-- 317 (600)
....+.++++ +.- +..--.|+--|.+.+++++|..+..++...++.-|-.-.-.++..|+
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 1122222211 101 11222345567888889998888888765444433222222333332
Q ss_pred -----hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 318 -----SVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 318 -----~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
..-|.+.|+-.-+.+..-|... --++.+++.-..++++.+.++..+. .+=...|...+| +..+++..|.+.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHH
Confidence 3345555554444443333221 2234444455567888888888773 444444554444 6788888999999
Q ss_pred HHHHHHcCC--CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 392 AYDLILNMP--FDATASMWGSLLASC-RNYRNLELAEIAAKQLFGMEPD-NAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 392 A~~~~~~m~--~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
|+++|-.+. .-.|..+|.+++.-| ...+..+.|..++-++ -.|. .......+++-|.+++.+--|.+.|+.+..
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999987773 123566776666554 4567777776665432 1222 233455678888899999888898988876
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
.+
T Consensus 490 lD 491 (557)
T KOG3785|consen 490 LD 491 (557)
T ss_pred cC
Confidence 54
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-05 Score=82.12 Aligned_cols=412 Identities=12% Similarity=0.063 Sum_probs=252.9
Q ss_pred HHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcch-HHHHHHHHHcC----
Q 007530 40 LQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVS-WNTIIGSYTTN---- 112 (600)
Q Consensus 40 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~---- 112 (600)
...+...|+++.|...+..-.+. +.....+.......|.+.|+.++|..++..+.. |+-.. |..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34456789999999888664432 344466777788999999999999999998875 43333 44555554222
Q ss_pred -CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 113 -GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 113 -g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
...+...++|+++... . |.......+.-.+.....+ ..+..++...++.|++ .+++.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~--y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--Y-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHh--C-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 3567778888888765 2 3433333332222221222 2355666667777754 46777777777665555555
Q ss_pred HHHccCC------------------CCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc
Q 007530 191 RVFESMP------------------ERNEVTW--SSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGL 249 (600)
Q Consensus 191 ~~f~~m~------------------~~d~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 249 (600)
+++.... .|....| .-+...|-..|++++|++++++..+. .|+ ...|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 5544321 1233334 55677888999999999999998875 565 55777888889999
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH----------hHHH--HHHHHHHhcCC
Q 007530 250 AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----------VLWN--TMISGFSRHAR 317 (600)
Q Consensus 250 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~ 317 (600)
|++.+|....+.+.... ..|..+-+-.+..+.++|++++|.+++.....++. ..|- ....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999876 56888888899999999999999999887776541 1343 34567899999
Q ss_pred hHHHHHHHHHHHHc--CCCCC-------------HHHHHHHHHHHHccCC-------HHHHHHHHHHHHHhcCCCc----
Q 007530 318 SVEVMILFEKMQQA--GLHPN-------------EQTYISVLSACSHIGM-------VEKGKSYFDLMVKQHNVLP---- 371 (600)
Q Consensus 318 ~~~A~~l~~~m~~~--g~~p~-------------~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p---- 371 (600)
+..|+.-|....+. .+.-| ..+|..+++..-+... ...|.+++-.+-.......
T Consensus 321 ~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~ 400 (517)
T PF12569_consen 321 YGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQ 400 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 99998887766542 12222 2233333333222111 1223333333321100000
Q ss_pred -------cHHHHHHHHHHH---HhcCCHHHHHHHHH-----------cC----CCCCCHHHHH-HHHHHHHHcCChHHHH
Q 007530 372 -------NVFHYSCMIDIL---GRAGLIHEAYDLIL-----------NM----PFDATASMWG-SLLASCRNYRNLELAE 425 (600)
Q Consensus 372 -------~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m----~~~p~~~~~~-~ll~~~~~~~~~~~a~ 425 (600)
+..--..+-.-- .+...-+++...-. +. +.+.|..... .|+ ....-+++|.
T Consensus 401 ~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~ 477 (517)
T PF12569_consen 401 EADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAM 477 (517)
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHH
Confidence 000000000000 01111111111110 00 1111221111 121 2234578899
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
++++-+.+..|++..+|..--.+|.+.|++--|.+.++.
T Consensus 478 kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 478 KFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999988877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-07 Score=87.44 Aligned_cols=148 Identities=11% Similarity=-0.109 Sum_probs=84.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 113 GREQEAVALFINMLREGKTPYS--EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
+..+.++.-+.+++......|+ ...|..+...+...|+.+.|...+..+++..+. +..+|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 3455666666666643212222 234555555666667777777666666665433 5566677777777777777777
Q ss_pred HHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 007530 191 RVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 191 ~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
..|++..+ | +..+|..+...+...|++++|++.|++.... .|+..........+...++.++|...+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 77766543 2 3556666666677777777777777766653 3433211111222233455666666665443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-05 Score=78.02 Aligned_cols=436 Identities=11% Similarity=0.026 Sum_probs=258.3
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHc
Q 007530 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTT 111 (600)
Q Consensus 35 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 111 (600)
.|-.+++.| ..+....+..+.+.+++ +++....+....--.+...|+.++|......-.. ++-+.|..+.-.+-.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 344455444 45566677777777665 3332222322222223456888888888776554 355678888888888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASR 191 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 191 (600)
..++++|++.|+.....+ +.|...+.-+.-.-++.|+++.....-.+..+..+. ....|..++-++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988864 556777766666666777777777766666665322 45567777778888888888888
Q ss_pred HHccCCC-----CCHHHHHHH------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCchHHHHHHH
Q 007530 192 VFESMPE-----RNEVTWSSM------VAGFVQNELYEEALILFRRAQVLGLEYNQFTIS-SVICACAGLAALIQGKQVH 259 (600)
Q Consensus 192 ~f~~m~~-----~d~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~ 259 (600)
+.+...+ ++...+.-. .....+.|..++|++.+..-... ..|...+. .-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 7665432 333333222 23456778888888777654332 22333332 3345567788888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH-HHHhcCCCcCH--hHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCC
Q 007530 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY-FVFSGIEEKNV--VLWNTMISGFSR-HARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~~~~~~~--~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p 335 (600)
..++..+ +.+..-|..+...+++-.+.-++. .+|....+.-. ..-.-+--...+ ..-.+..-+++..+.+.|++|
T Consensus 243 ~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 243 RRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 8888774 334444444555554333333333 55554432100 000000001111 122334455667777778765
Q ss_pred CHHHHHHHHHHHHccCCHHH----HHHHHHHHHHhcC----------CCccHHHH--HHHHHHHHhcCCHHHHHHHHHcC
Q 007530 336 NEQTYISVLSACSHIGMVEK----GKSYFDLMVKQHN----------VLPNVFHY--SCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 336 ~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m 399 (600)
--. .+.+.|-.-...+- +..+...+ ...| -+|+...| -.++..|-+.|+++.|+.+++..
T Consensus 322 vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 322 VFK---DLRSLYKDPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred hhh---hhHHHHhchhHhHHHHHHHHHHHhhc-ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333 33333322221111 11111111 1111 14555444 45677888999999999999876
Q ss_pred -CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc-----c
Q 007530 400 -PFDATA-SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK-----K 472 (600)
Q Consensus 400 -~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~ 472 (600)
.-.|+. ..|..=.+.+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|.. .
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~ 477 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA 477 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH
Confidence 445653 344445567788899999999999999998765433334566667889999999998877665531 1
Q ss_pred CCceEEEEEc
Q 007530 473 EKSKSWVEIK 482 (600)
Q Consensus 473 ~~~~~~~~i~ 482 (600)
+..|.|..+.
T Consensus 478 ~mqcmWf~~E 487 (700)
T KOG1156|consen 478 EMQCMWFQLE 487 (700)
T ss_pred HhhhHHHhHh
Confidence 2246776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-07 Score=82.90 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMID 381 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 381 (600)
+...+.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+..++ +.| +-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3445667899999999999999999885 454 56888888899999999999999999874 345 5567788888
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 382 ILGRAGLIHEAYDLILNMPFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
-++..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+.+.....+.+...+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999998733332 56899998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 007530 458 VARARKLIRDSEV 470 (600)
Q Consensus 458 a~~~~~~m~~~~~ 470 (600)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=87.63 Aligned_cols=222 Identities=12% Similarity=-0.024 Sum_probs=146.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 007530 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK 182 (600)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 182 (600)
+.|.++|.+-|.+.+|.+.|+.-++. .|-+.||..+-++|.+..+...|..++.+.++. ++-|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 56778888888888888888887775 356678888888888888888888888887776 34466666677778888
Q ss_pred cCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 007530 183 CGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVH 259 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 259 (600)
.++.++|.++++...+ .++.+...+..+|.-.++++-|+.+|+++.+.|+. +...|..+.-.|.-.+++|.+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888887665 25556666677788888888888888888888754 4556666666777777777777777
Q ss_pred HHHHHhCCCCc--hhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007530 260 AVLCKTGFGSN--MFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329 (600)
Q Consensus 260 ~~~~~~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 329 (600)
..+...--.|+ ..+|-.|.......|++..|.+.|+-... .+..++|.|.-.-.+.|+.++|..++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 77665433222 23444444444445555555555443332 122344444444444444444444444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-05 Score=79.38 Aligned_cols=403 Identities=12% Similarity=-0.003 Sum_probs=254.7
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC----CCcchHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ----RCIVSWN 103 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~ 103 (600)
....|...|-.+.-+..+.|.++.+-+.|++....- -.....|..+-..|..+|.-..|..+.+.-.. |+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 334577778777778888888888888888876543 34456788888889999999999999986542 4333333
Q ss_pred HHH-HHHH-cCCChhHHHHHHHHHHHc-----CCCCCChhhHHHHHHHHhcC----C-------ChHHHHHHHHHHHHhC
Q 007530 104 TII-GSYT-TNGREQEAVALFINMLRE-----GKTPYSEFTVSSVLCACAAK----R-------DVFECKQLHVFALKAA 165 (600)
Q Consensus 104 ~li-~~~~-~~g~~~~A~~~~~~m~~~-----g~~~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g 165 (600)
.++ ..|. +-+..+++++.-.+.+.. +.++| ..+..+.-+|... . ...++.+.++..++.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 333 3333 347778888777776652 11333 3344444343322 1 1335667777887776
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHccCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 007530 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMP----ERNEVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTIS 240 (600)
Q Consensus 166 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~ 240 (600)
.. |+.+--.+.--|+..++++.|.....+.. ..+...|..+.-.+...+++.+|+.+.+..... |. |..-..
T Consensus 475 ~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~ 551 (799)
T KOG4162|consen 475 PT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMD 551 (799)
T ss_pred CC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhch
Confidence 54 44444445556888899999888766543 458899999999999999999999999876543 21 110000
Q ss_pred HHHHHHHccCchHHHHHH-------HH----------HHHH----hCC-------CCchhHHHHHHHHHHhh---CCHHH
Q 007530 241 SVICACAGLAALIQGKQV-------HA----------VLCK----TGF-------GSNMFAASSLVDMYAKC---GCVVD 289 (600)
Q Consensus 241 ~ll~a~~~~g~~~~a~~~-------~~----------~~~~----~~~-------~~~~~~~~~l~~~y~~~---g~~~~ 289 (600)
.-+..-...++.+++... |+ +... .|. ...+.++..+....... -..+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 001111112222222111 11 1111 111 11122222222222111 11111
Q ss_pred HHHHHhcCCCcC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 290 AYFVFSGIEEKN------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 290 A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
....+...+.|+ ...|......+...+..++|...+.+.... ..-....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 222222222333 345667777888999999999888887764 2233445555556667789999999999887
Q ss_pred HHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHH--HHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 364 VKQHNVLP-NVFHYSCMIDILGRAGLIHEAYD--LILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 364 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
. -+.| ++....++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-..|..++++++.+
T Consensus 711 l---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 711 L---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred H---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 5 4566 46678899999999998777777 77766 5555 57899999999999999999999999999998877
Q ss_pred cc
Q 007530 439 AG 440 (600)
Q Consensus 439 ~~ 440 (600)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 63
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.5e-08 Score=95.49 Aligned_cols=248 Identities=13% Similarity=0.032 Sum_probs=188.0
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
+.+.|++.+|.-.|+..++.. |.+...|--|.......++-..|+..+.+..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988876 66888999999999999998999998887765 46677778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 323 ILFEKMQQAGLH--------PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 323 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
..|++-+....+ ++..+-.. ........+....++|-.+....+..+|..++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654210 01000000 12222334455667777776777767888899999999999999999999
Q ss_pred HHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 007530 395 LILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 395 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 472 (600)
.|+.. .++| |..+||-|...++...+.++|...|.+++++.|.-.++...|+..|...|.+++|.+.|=......-+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k- 530 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK- 530 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc-
Confidence 99987 5666 57899999999999999999999999999999999999999999999999999999998666532211
Q ss_pred CCceEEEEEcCcccCcchHHHHHHHHHHHHHH
Q 007530 473 EKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEM 504 (600)
Q Consensus 473 ~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m 504 (600)
+.. .....++ .+.+++.|+..+.-|
T Consensus 531 ----s~~--~~~~~~~-se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 531 ----SRN--HNKAPMA-SENIWQTLRLALSAM 555 (579)
T ss_pred ----ccc--cccCCcc-hHHHHHHHHHHHHHc
Confidence 000 0001112 567887777555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-06 Score=87.46 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILG 384 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 384 (600)
-+...|-..|++++|++++++.++. .|+ ...|..-...+-+.|++++|.+..+... .+.+ |...-+..+..+.
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHH
Confidence 3445566677777777777777764 455 3455555666777777777777777764 2233 4445555566667
Q ss_pred hcCCHHHHHHHHHcCCC---CC--CH----HHH--HHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 385 RAGLIHEAYDLILNMPF---DA--TA----SMW--GSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m~~---~p--~~----~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
|+|++++|.+++..... .| |. ..| .....+|.+.|++..|++-+..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777665521 11 11 133 2344566777777777776666654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-06 Score=76.90 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=132.5
Q ss_pred CCHHHHHHHHccCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 184 g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
+++..+..+.++.+. .+..+.+.......+.|++++|++-|+...+-|--.....|+..+ +..+.++.+.|.....++
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEI 204 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHH
Confidence 444445555555542 333343333334445555555555555444332122233344333 223344555555555555
Q ss_pred HHhCCCC-------------c---------------hhHHHHHHHHHHhhCCHHHHHHHHhcCCCc-----CHhHHHHHH
Q 007530 263 CKTGFGS-------------N---------------MFAASSLVDMYAKCGCVVDAYFVFSGIEEK-----NVVLWNTMI 309 (600)
Q Consensus 263 ~~~~~~~-------------~---------------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li 309 (600)
+..|+.. | +..+|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 5443221 1 122344445567889999999999999853 666655443
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhc-C
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL-PNVFHYSCMIDILGRA-G 387 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~-g 387 (600)
-. -..+++.+..+-+.-+..... --..||..++-.|++..-++.|-.++.+-. ..... .+...|+ |++++..+ -
T Consensus 285 l~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT 360 (459)
T KOG4340|consen 285 LM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQT 360 (459)
T ss_pred Hh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCC
Confidence 22 124455555555555555432 345789999999999988888888775431 11110 1222333 33444433 3
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHH--HHHHHcCC---hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 388 LIHEAYDLILNMPFDATASMWGSLL--ASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 388 ~~~~A~~~~~~m~~~p~~~~~~~ll--~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
..++|++-++.+...-....-..-+ .--+..++ ...+.+-+++.+++- ..+...-++.|++..++.-+.+.|
T Consensus 361 ~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHH
Confidence 4556655444431000000000000 00111111 112222233333321 113445667788888888888887
Q ss_pred HHhh
Q 007530 463 KLIR 466 (600)
Q Consensus 463 ~~m~ 466 (600)
..-.
T Consensus 438 r~Sv 441 (459)
T KOG4340|consen 438 RKSV 441 (459)
T ss_pred HHHH
Confidence 6544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-05 Score=79.39 Aligned_cols=216 Identities=11% Similarity=0.041 Sum_probs=143.8
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH----------hHHHHHH
Q 007530 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV----------VLWNTMI 309 (600)
Q Consensus 240 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li 309 (600)
..+.++..+..+++.+.+-+...+... .++.-++....+|...|........-....+..- .+...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556667777777777777665 5666667777778877777666555444332211 1222234
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCC
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF-HYSCMIDILGRAGL 388 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 388 (600)
.+|.+.++++.|+..|.+.......||..+ +....+++........ -+.|... -...=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 456667778888888887666544444222 2233344444433331 2233321 11112456778899
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 389 IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+.+|...|.++ ...| |...|..-..++.+.+++..|..-.+..++++|+....|..=+.++....+|++|.+.|....
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 2234 678888899999999999999999999999999999999988889999999999999998877
Q ss_pred hCC
Q 007530 467 DSE 469 (600)
Q Consensus 467 ~~~ 469 (600)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-06 Score=84.66 Aligned_cols=353 Identities=13% Similarity=0.053 Sum_probs=182.3
Q ss_pred CchhHHHHHH--HHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCC-------C-CCCh
Q 007530 66 NDTLTSNILI--NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-------T-PYSE 135 (600)
Q Consensus 66 ~~~~~~~~li--~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~-~p~~ 135 (600)
-|..+-.+++ +.|.--|+.+.|.+-.+.+ ++...|..|.+.+.+..+.+-|.-.+-.|..... . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 3566667776 4577789999988887766 3567899999999888888877766666543210 1 111
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC-CHHHHHHHHHHHHhC
Q 007530 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQN 214 (600)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~ 214 (600)
.+=.-+.-.....|-+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- =-.||..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222333345677788888888776654 23445666778888888775432221 123555555555667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHH
Q 007530 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVF 294 (600)
Q Consensus 215 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 294 (600)
++.+.|++.|++-... -...+ -++. .++...+++.+. ..|...|.--..-.-..|+++.|+.+|
T Consensus 872 ~Di~~AleyyEK~~~h----afev~-rmL~-----e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVH----AFEVF-RMLK-----EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCCh----HHHHH-HHHH-----hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 7788888887753211 00000 0110 001111111111 122334444444444556666666666
Q ss_pred hcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH---------
Q 007530 295 SGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK--------- 365 (600)
Q Consensus 295 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--------- 365 (600)
.... -|-+++...|-.|+.++|-.+-++- -|......|.+-|-..|++.+|..+|.+...
T Consensus 936 ~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 936 SSAK-----DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred HHhh-----hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 3445555555556666555554431 2334444455556666666666655554421
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHh----------cCC
Q 007530 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLF----------GME 435 (600)
Q Consensus 366 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~ 435 (600)
+++++. ..+|. ....+..+.-+|-.+|++.+..-+ --+..|.+.|.+.+|+++.-+.. .++
T Consensus 1005 End~~d--~L~nl--al~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1005 ENDMKD--RLANL--ALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred hcCHHH--HHHHH--HhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 111100 01110 001112233334444444432111 11223444555555554433221 255
Q ss_pred CC-CcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 436 PD-NAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 436 p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
|. ||.....-++.+....++++|..++-..+
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 53 56667777777888888888888776554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=88.84 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=72.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH---HHHHHHHHHhcCCHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH---YSCMIDILGRAGLIH 390 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~ 390 (600)
..|++++|++++.+- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 345555555544321 233333444445555555555555555553 12222211 112222222223456
Q ss_pred HHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHhhh
Q 007530 391 EAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW-EEVARARKLIRD 467 (600)
Q Consensus 391 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 467 (600)
+|..+|+++ ...+++.+.+.+..+....|++++|+.++.++++.+|+++.+...++.+....|+. +.+.+.+.+++.
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666655 22345566666666666667777777777777777777666666666666666666 555566666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-05 Score=73.25 Aligned_cols=190 Identities=7% Similarity=-0.023 Sum_probs=99.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC---CCcCHhHHHHHHHHHHhcCChHHHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI---EEKNVVLWNTMISGFSRHARSVEVMIL 324 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l 324 (600)
..|+...+......+++.. +-|...+..-..+|...|.+..|+.-++.. ...+....--+-..+..-|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444444444444432 334445555555555566665555444332 234444444555555666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCH
Q 007530 325 FEKMQQAGLHPNEQTYISV-------------LSACSHIGMVEKGKSYFDLMVKQHNVLP--NVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~l-------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 389 (600)
.++-.+ +.||....... +......+.+.++.+-.+...+...-.+ ....+..+-.++...|++
T Consensus 246 iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 666555 35554321110 0112234455555555555443211101 122344455566666777
Q ss_pred HHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 390 HEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.+|++...+. .+.|| +.++..-..+|.....++.|+.-++++.+.+|++..
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 7777666554 44454 566666666777777777777777777777776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-05 Score=75.44 Aligned_cols=287 Identities=12% Similarity=0.040 Sum_probs=202.4
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
+..++...|...+-.+.....++.|......+.+.+...|+.+++...|+......+. ++.......-...+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 3456666666665555444437888899999999999999999999999998775322 121112222234567888877
Q ss_pred HHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 190 SRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 190 ~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
..+...+-. .....|-.-........+++.|+.+-++..+.. +-+...|..-..++...++.++|.-.|..+....
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 776665543 234456555666677889999999988877642 2234455555677788999999999998887764
Q ss_pred CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHH-HH-HHhcCChHHHHHHHHHHHHcCCCCCHH-HH
Q 007530 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMI-SG-FSRHARSVEVMILFEKMQQAGLHPNEQ-TY 340 (600)
Q Consensus 267 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li-~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 340 (600)
+.+...|..|+..|...|++.+|.-.-+... ..+..+.+.+. .. +-...--++|..++++-.. +.|+-. ..
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 5688999999999999999999875544322 12333333221 11 1122235688888887766 567744 55
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT 404 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 404 (600)
+.+...|...|..+.++.+++.... ..||....+.|.+.+...+.+++|.+.|... .+.|+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6677789999999999999998874 3689999999999999999999999998765 44554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00011 Score=68.91 Aligned_cols=383 Identities=11% Similarity=0.046 Sum_probs=213.1
Q ss_pred HHHHHHHHH-hccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH-HHHHcC
Q 007530 35 TLQATLQSC-ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII-GSYTTN 112 (600)
Q Consensus 35 ~~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~ 112 (600)
....-|..| -+.|+.++|...+..+.... .++..++-.|...+--.|.+.+|..+-...++ ....+.|+ ..-.+-
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k--~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK--TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHh
Confidence 455555555 48899999999999887754 45555555565555556888899888777653 22222222 222222
Q ss_pred C------------------------------ChhHHHHHHHHHHHcCCCCCChhhHHHHH-HHHhcCCChHHHHHHHHHH
Q 007530 113 G------------------------------REQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLHVFA 161 (600)
Q Consensus 113 g------------------------------~~~~A~~~~~~m~~~g~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~ 161 (600)
| .+.+|+++|.+.+..+ |+-...+.-+ -+|.+..-.+-+.+++.-.
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn---~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN---PEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3 3444444444444332 2222222222 2223333344444444433
Q ss_pred HHhCCCCChhHHHHHHHHHHHc--CCHHHHH--HHHccCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCC
Q 007530 162 LKAAMDRNVFVGTALLDVYAKC--GLISDAS--RVFESMPERNEVTWSSMVAGFVQN-----ELYEEALILFRRAQVLGL 232 (600)
Q Consensus 162 ~~~g~~~~~~~~~~li~~y~~~--g~~~~A~--~~f~~m~~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~ 232 (600)
++.- +.++..-|.......+. |+..+++ ++-+...+. ...+.-.+++ .+.+.|++++--+.+ +
T Consensus 212 L~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~ 283 (557)
T KOG3785|consen 212 LRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--H 283 (557)
T ss_pred HHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHh--h
Confidence 3331 11222222222222111 1111111 111111100 0112222222 123455555544433 2
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhhCCHHHHHHHHhcCCC-----cCH
Q 007530 233 EYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFA-----ASSLVDMYAKCGCVVDAYFVFSGIEE-----KNV 302 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~ 302 (600)
.|. .-..++--|.+.+++.+|..+...+.- ..|...+ +.++..-......+.-|.+.|+-+-+ ..+
T Consensus 284 IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 232 223444557788899888877655421 1222222 22232222333346678888876543 233
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH-HHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY-SCMID 381 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~ 381 (600)
.--.+|.+.+.-..++++++-.+.....- +.-|...-..+..+.+..|++.+|+++|-.+. .-.+ .+..+| ..|..
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLAR 436 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHH
Confidence 44566777777788899999999988776 33344444457888999999999999998874 2222 344555 45568
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 382 ILGRAGLIHEAYDLILNMPFDATASMWGS-LLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
+|.++|.++-|++++-++....+..+.-. +..-|.+.+.+=-|-++|..+..++|..
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 89999999999999999864445555444 4457888999999999999999999973
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9e-05 Score=75.07 Aligned_cols=391 Identities=12% Similarity=0.051 Sum_probs=232.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHccCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 007530 69 LTSNILINFYSKCGLISGARKVFDEMPQRC---IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCAC 145 (600)
Q Consensus 69 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~ 145 (600)
..+..++..|- .+++...+++.+.+..+. ..|.....-.+...|+-++|....+.-.... +-+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHH
Confidence 34555666663 345555555444443211 1222222223445678888888877766653 34666777777777
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHH
Q 007530 146 AAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALI 222 (600)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~ 222 (600)
....++++|.+.+..+++.+.. |...+.-|.-.-++.|+++.....-....+ .....|..++.++.-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888887644 667777666666677777666655444433 345678888888888888888888
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHH------HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 223 LFRRAQVLG-LEYNQFTISSVICA------CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 223 ~~~~m~~~g-~~p~~~t~~~ll~a------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
+.++..+.. -.|+...|.-.... ....|.++.|.+.+...... +......-..-.+.+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 888887654 24565555533322 24556666666655444332 22233344455677788888888888888
Q ss_pred cCCC--cCHhHHHHH-HHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHhcCCC
Q 007530 296 GIEE--KNVVLWNTM-ISGFSRHARSVEVM-ILFEKMQQAGLHPNEQTYISV-LSACSHIGMVEKGKSYFDLMVKQHNVL 370 (600)
Q Consensus 296 ~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~ 370 (600)
.+.. ||...|+-. ..++.+-.+..+++ .+|....+. .|-...-.-+ ++........+..-.++..+. ..|++
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p 320 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVP 320 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCC
Confidence 7764 444444443 33443333333444 555555443 1211111111 111111222333344445444 34554
Q ss_pred ccHHHHHHHHHHHHhcCCHHH----HHHHHHcC-C------------CCCCHHHHHH--HHHHHHHcCChHHHHHHHHHH
Q 007530 371 PNVFHYSCMIDILGRAGLIHE----AYDLILNM-P------------FDATASMWGS--LLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+ ++..+...|-.-...+= +..+...+ + .+|....|.. +...+-..|+++.|+...+.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 23333333322111111 11122222 1 2567777765 455567789999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 432 FGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 432 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
+.--|.-+..|..-+.++...|..++|...+++..+.+.
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999888999999999999999999999999987663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-05 Score=79.10 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHH
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNE--QTYISVLSAC 347 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~ 347 (600)
...+...+...|++++|...+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 33444555666666666666655442 2344555556666666666666666666554321 1222 1233455556
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHH-H--HHHHHHHhcCCHHHHHHH---HHc---C-CCCCCHHHHHHHHHHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHY-S--CMIDILGRAGLIHEAYDL---ILN---M-PFDATASMWGSLLASCRN 417 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~~ 417 (600)
...|++++|..+++.........+..... + .++.-+...|....+.++ ... . +.............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 66666666666666653221111111111 1 222222233322222221 111 1 100111222245555666
Q ss_pred cCChHHHHHHHHHHhcCC-C--------CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 418 YRNLELAEIAAKQLFGME-P--------DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.|+.+.|...++.+.... . .........+.++...|++++|.+.+......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777765411 1 12344556777788999999999888777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9e-06 Score=85.71 Aligned_cols=396 Identities=14% Similarity=0.028 Sum_probs=235.3
Q ss_pred hHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 51 RGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 51 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
.+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .+..+|..+...|++...++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 33444444444444444 46788888888888888899999987654 577889999999999999999999833322
Q ss_pred HcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHH
Q 007530 127 REGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206 (600)
Q Consensus 127 ~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~ 206 (600)
+......-...|..+.-.+...++...+..-|+...+..+. |...|..|..+|.++|++..|.++|++...-++.+|..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 22101111122333445567788889999889888887655 88899999999999999999999998877644443332
Q ss_pred ---HHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHccCchH-------HHHHHHHHHHHhCCCCc
Q 007530 207 ---MVAGFVQNELYEEALILFRRAQVL------GLEYNQFTISSVICACAGLAALI-------QGKQVHAVLCKTGFGSN 270 (600)
Q Consensus 207 ---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~g~~~-------~a~~~~~~~~~~~~~~~ 270 (600)
....-+..|.+++|+..+...... +..--..++..+...+...|-.. .+.+.+..........+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 223346689999999999877542 11111223333333333333333 33333333333333334
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCCHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV--LWNTMISG-FSRHARS---V---EVMILFEKMQQAGLHPNEQTYI 341 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~p~~~t~~ 341 (600)
...|-.+.+ |..+|-... |+.+ .+..++.. +-..+.. + -+.+.+-.-.+ ...+..+|.
T Consensus 713 ~~~Wi~asd----------ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~Wy 779 (1238)
T KOG1127|consen 713 RLQWIVASD----------ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWY 779 (1238)
T ss_pred HHHHHHHhH----------HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHH
Confidence 444443333 333343333 3321 11111111 1122211 1 11111111111 112234444
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHH
Q 007530 342 SVLSACSH--------IGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGS 410 (600)
Q Consensus 342 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 410 (600)
.+...|.+ ..+...|+..+...++. .. +..+|+.|. .+...|.+.-|..-|-+- ..+....+|..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHH-Hhhccchhhhhhhhhhhhhhccccchhheec
Confidence 44333322 12334566666665532 23 344555543 445567777776666443 22345788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
+...|....|++-|..++.+...++|.+...+...+.+-...|+.-++..+|..
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 988899999999999999999999999888877777777777877777777765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=83.17 Aligned_cols=226 Identities=12% Similarity=0.011 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMY 281 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y 281 (600)
....+.++|...|+++.++. +..... .|.......+...+....+-+.+..-+...+..... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34445555666666554332 222221 444444433333333223333333322222222222 2333333344566
Q ss_pred HhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCCHHHHH
Q 007530 282 AKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS----HIGMVEKGK 357 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~ 357 (600)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 7778888888888765 45666667788888999999999999998864 344 34444444433 234688999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHhcC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNL-ELAEIAAKQLFGM 434 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 434 (600)
.+|+++.. ...+++.+.+.+.-+....|++++|++++.+. ...| ++.+...++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999864 34577788888888899999999999988775 3333 466777788887787877 6788888888888
Q ss_pred CCCCc
Q 007530 435 EPDNA 439 (600)
Q Consensus 435 ~p~~~ 439 (600)
.|+.+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 88865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00012 Score=77.50 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..++.++.+.|.+++-.+.+..+.+..-+|.+ -+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3467999999999999999998877542 36678999999999999999999998888887666654 456888
Q ss_pred HHHhhCCHHHHHHHHhcCCC-----------------------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 280 MYAKCGCVVDAYFVFSGIEE-----------------------KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
+|++.+++.+-+++...-.. .++..|..+...+...|++..|...-++. .+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 99999988887766542110 13334444444555555555554443332 23
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLAS 414 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 414 (600)
..||.-+-.+|...+.+..|. |. ..++.....-..-|+..|-..|.++|-..+++.. +.+. .-..++.|.-.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 455666666665544433321 21 1122233444556666777777777777766654 3332 33445555544
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
|.+.+ .++..+.++-... .-+ .--+++++.++-.|.+..-++..-
T Consensus 1323 Yskyk-p~km~EHl~LFws-RvN----ipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1323 YSKYK-PEKMMEHLKLFWS-RVN----IPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHhcC-HHHHHHHHHHHHH-hcc----hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44432 2222222222111 001 113455566666666665555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00022 Score=81.64 Aligned_cols=367 Identities=13% Similarity=0.015 Sum_probs=176.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCCcch--HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 007530 70 TSNILINFYSKCGLISGARKVFDEMPQRCIVS--WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA 147 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~ 147 (600)
.+......|...|++.+|.............. ...........|+++.+...+..+.... ...+..........+..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHH
Confidence 34445566777888888887776665432211 1112233445677777777666552221 11122223333444556
Q ss_pred CCChHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHHcCCHHHHHHHHccCCC----CCH----HHHHHHHHHH
Q 007530 148 KRDVFECKQLHVFALKAAMD------RN--VFVGTALLDVYAKCGLISDASRVFESMPE----RNE----VTWSSMVAGF 211 (600)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~----~~~~~li~~~ 211 (600)
.|+.+++...+..+.+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 78888888877776543111 11 11222233445567777777776665322 121 2344455556
Q ss_pred HhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHh----CCCC---chhHHHHHHH
Q 007530 212 VQNELYEEALILFRRAQVLGL---EY--NQFTISSVICACAGLAALIQGKQVHAVLCKT----GFGS---NMFAASSLVD 279 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~ 279 (600)
...|++++|...+.+.....- .+ ...++..+...+...|+++.|...+.+.... +... ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 667777777777766643210 01 1123333444555666666666666555442 1100 1112222233
Q ss_pred HHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHccCCHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA--GLHPN--EQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~ 355 (600)
. +...|++++|...+.+.... ...|. ...+..+.......|+.++
T Consensus 582 ~-------------------------------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 582 L-------------------------------LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred H-------------------------------HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 3 33445555555555444331 01111 1222233334445566666
Q ss_pred HHHHHHHHHHhcCCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHcCCCC--CCH----HHHHHHHHHHHHcCChHHH
Q 007530 356 GKSYFDLMVKQHNVLPNVFHY-----SCMIDILGRAGLIHEAYDLILNMPFD--ATA----SMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~~~~~~a 424 (600)
|...++..............+ ...+..+...|+.+.|..++...... ... ..+..+..++...|+.++|
T Consensus 631 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 710 (903)
T PRK04841 631 ARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEA 710 (903)
T ss_pred HHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 666555553211100000000 01123334456666666666544110 011 1123444555666677777
Q ss_pred HHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 425 EIAAKQLFGME------PDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 425 ~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...+++++... +....++..++.+|...|+.++|...+.+..+.
T Consensus 711 ~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 711 EIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77666665521 112234556666777777777777776666543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.9e-05 Score=75.76 Aligned_cols=258 Identities=13% Similarity=0.135 Sum_probs=158.9
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 007530 179 VYAKCGLISDASRVFESMPERNEVT--WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK 256 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 256 (600)
+-.....+.+|+.+++.+..+++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 3344556666666666665544332 5555666777777777777765432 2344556677777777766
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
++-.+. .|.+.....|-+-..-.-+.|++.+|.++|-.+..|+.. |..|-++|..++.+++..+- .|+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----Chh
Confidence 654433 233344555555555666777777777777777766643 55677777777777776653 333
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC----CHHHHHH
Q 007530 337 --EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA----TASMWGS 410 (600)
Q Consensus 337 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ 410 (600)
..|-..+..-+-..|++..|...|-+.. -|.+-+.+|...+.+++|.++-+.-+-.. -...|.-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3456666777788899999988876553 35677888888999999988877653111 1223322
Q ss_pred ------HHHHHHHcCChHHHH-------------HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 411 ------LLASCRNYRNLELAE-------------IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 411 ------ll~~~~~~~~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
-+..+-++|-++.|. .+.+-..+ ..-+..+.-++..+...|++++|.+-+-+..+.+
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 122233444444443 33332222 2234577788888899999999988776665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-05 Score=75.03 Aligned_cols=194 Identities=13% Similarity=0.013 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH---HH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTA---LL 177 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---li 177 (600)
|..+...+...|+.+++...+....+.....++.... ......+...|+.+.+..+++.+++..+. +...+.. +.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHHH
Confidence 4444444444555555555544444331011111111 11122234455666666666665555322 2222221 11
Q ss_pred HHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHH
Q 007530 178 DVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 254 (600)
......|..+.+.+.++..... +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 1112234444444444432211 12233344455666666666666666666542 2233444555555566666666
Q ss_pred HHHHHHHHHHhCC-CCch--hHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 255 GKQVHAVLCKTGF-GSNM--FAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 255 a~~~~~~~~~~~~-~~~~--~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
|...+....+..- .++. ..+..+...+...|++++|..+|++.
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666665554321 1111 22334555555566666666655554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-06 Score=90.37 Aligned_cols=200 Identities=10% Similarity=0.069 Sum_probs=169.0
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--------KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 339 (600)
|.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...++|++..+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 55667788888888999999999999887653 235679999988888898889999999998742 22456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCCHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PFDATASMWGSLLASC 415 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 415 (600)
|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+...-+.|..++++. |-+.......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998877 55668999999999999999999998775 4333556666677777
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
.++|+.++++.+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999998899999999999999999999999999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=71.28 Aligned_cols=201 Identities=12% Similarity=-0.005 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
+...+.-+|.+.|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+-|..+++.. +.+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F-- 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF-- 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH--
Confidence 34455566777777777777776666542 2233455555555666666666666666665543 2334444444444
Q ss_pred hhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
+|..|++++|...|++......-| -..||..+.-+..+.|+.+.|..+|+
T Consensus 113 -----------------------------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 113 -----------------------------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred -----------------------------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 444555555555555544431111 12344444444455555555555555
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
+.++... -.......+.....+.|++-.|..+++.. ...+...+.-..+..-...||.+.+-+.-.++....|..
T Consensus 164 raL~~dp--~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 164 RALELDP--QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhCc--CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 5543211 11223444555555555555555555544 222444444444444555556555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-08 Score=59.18 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=26.8
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0001 Score=75.38 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=137.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH
Q 007530 210 GFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289 (600)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 289 (600)
.+.+.|+++.|+.-|-+... ....+.+......+.+|..+++.+..... -..-|..+.+-|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34455556655555543321 22334445556677777777777766432 22335556777888888888
Q ss_pred HHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 007530 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369 (600)
Q Consensus 290 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 369 (600)
|.++|.+.. .++--|..|.+.|++++|.++-.+.. |.......|..-..-.-..|.+.+|.+++-.+.
T Consensus 784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 888887542 34556777888888888877765542 222233344444444566777778877765442
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
.|+. .|.+|-+.|..++..++.++..-.--..|-..+..-+...|++..|+..|-++ .-+-.-.++|
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmy 918 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMY 918 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHh
Confidence 3542 46778888888888888877631112345556666777788888888777654 3445667788
Q ss_pred HhcCChHHHHHHHHH
Q 007530 450 AANRRWEEVARARKL 464 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~ 464 (600)
...+.|++|.++-+.
T Consensus 919 k~s~lw~dayriakt 933 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhhHHHHHHHHhc
Confidence 888888888777543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.8e-08 Score=59.04 Aligned_cols=33 Identities=42% Similarity=0.610 Sum_probs=26.3
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHccCC
Q 007530 63 GLNNDTLTSNILINFYSKCGLISGARKVFDEMP 95 (600)
Q Consensus 63 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 95 (600)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00019 Score=71.28 Aligned_cols=393 Identities=12% Similarity=0.052 Sum_probs=246.4
Q ss_pred HhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHH
Q 007530 43 CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAV 119 (600)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 119 (600)
....|+++.|...|...+... +++...|+.-..+|++.|++++|.+=-.+-.+ | -...|+-...++.-.|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 345789999999998888765 56888999999999999999988876554432 3 3457889999999999999999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHhcCC---ChHHHHHHHHHHHHhCC---CCChhHHHHHHHH----------HHHc
Q 007530 120 ALFINMLREGKTPYSEFTVSSVLCACAAKR---DVFECKQLHVFALKAAM---DRNVFVGTALLDV----------YAKC 183 (600)
Q Consensus 120 ~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~----------y~~~ 183 (600)
.-|.+-++. .+.|...++.+..+..... +.-..-.++......-. ......|..++.. |..-
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999998887 4667778888887762211 11111111111111000 0000112222221 1111
Q ss_pred CCHHHHHHHHccC----------------CCC------------C----------HHHHHHHHHHHHhCCCHHHHHHHHH
Q 007530 184 GLISDASRVFESM----------------PER------------N----------EVTWSSMVAGFVQNELYEEALILFR 225 (600)
Q Consensus 184 g~~~~A~~~f~~m----------------~~~------------d----------~~~~~~li~~~~~~g~~~~A~~~~~ 225 (600)
.++..|.-++... ..| | ..-.-.+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1122222222111 011 1 1124556777778888999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhhCCHHHHHHHHhcCCC
Q 007530 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN------MFAASSLVDMYAKCGCVVDAYFVFSGIEE 299 (600)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 299 (600)
...... -+..-++....++...|.+......-...++.|.+.- .....-+...|.+.++++.|+..|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 877653 3333444555667777777766666555555442210 11122244578888999999999887542
Q ss_pred c--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 007530 300 K--NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376 (600)
Q Consensus 300 ~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 376 (600)
+ +... ..+....++++.......- +.|+.. -...=.+.+.+.|++..|...+.++++.. +-|...|
T Consensus 327 e~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lY 395 (539)
T KOG0548|consen 327 EHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLY 395 (539)
T ss_pred hhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHH
Confidence 1 2111 1223334555555544433 344432 12222566778999999999999998643 4478899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
..-.-+|.+.|.+.+|+.=.+.. ...|+ ...|.-=..++....+++.|...|.+.++.+|++......+.+++..
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999988765544 33444 45565556667778899999999999999999987766666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00069 Score=72.04 Aligned_cols=355 Identities=13% Similarity=0.098 Sum_probs=202.1
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGM--GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 109 (600)
|....+..++++...+-+.+-.++++.++-. -+..+....|.||-.-.|. +.....+..+++..-|.. .+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 3334455667777767666666777666522 1223334445554443333 223333444433321111 233344
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
..++-+++|+.+|+.. ..+......++. ..++++.|.++-+.. ..+.+|+.+..+-.+.|.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHH
Confidence 5566778888888763 234444444443 234555555443322 1456788888888888888888
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC
Q 007530 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269 (600)
Q Consensus 190 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 269 (600)
++-|-+. .|+..|.-+|....+.|.|++-++++....+..-.|... +.++-||++.+++.+.+.+.. .|
T Consensus 1124 ieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1124 IESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred HHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 8777443 456778888888888888888888777666655555544 356667777777666554431 23
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCC------------------------CcCHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIE------------------------EKNVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
+..-...+.+-+...|.++.|.-+|..+. ..+..+|--.--+|...+.+.-|
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA---- 1268 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA---- 1268 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH----
Confidence 33333334444444444444444443332 13567787777777665554322
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcC--CHHHHHHHH-HcCCC
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAG--LIHEAYDLI-LNMPF 401 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~-~~m~~ 401 (600)
+|-...+.....-..-++..|...|-+++-+.+++... |+.. ....|+-|.-.|.+-. +.-|=+++| .+..+
T Consensus 1269 -QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNi 1344 (1666)
T KOG0985|consen 1269 -QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNI 1344 (1666)
T ss_pred -HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcch
Confidence 33333344456667889999999999999999998764 6554 4556777777777653 222223333 33321
Q ss_pred C------CCHHHHHHHHHHHHHcCChHHH
Q 007530 402 D------ATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 402 ~------p~~~~~~~ll~~~~~~~~~~~a 424 (600)
+ .....|+.|.-.|.+...++-|
T Consensus 1345 pKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1345 PKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 1 1233566666555555554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00042 Score=69.61 Aligned_cols=114 Identities=15% Similarity=0.019 Sum_probs=63.6
Q ss_pred CHHHHHHHHHcC-CCCCC--HHHHHHHHHHHHHcCChHHHHHHHH--------HHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 388 LIHEAYDLILNM-PFDAT--ASMWGSLLASCRNYRNLELAEIAAK--------QLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 388 ~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
...+|.+++... .-.|+ ..+.-..+......|+.+.|.+++. .+.+.. ..|++-..+...|.+.+.-+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc
Confidence 355666665554 22333 3344445555666788888888887 333322 23556666777777777777
Q ss_pred HHHHHHHHhhhCCCccCCc-----e-EEEEEcCcccCcchHHHHHHHHHHHH
Q 007530 457 EVARARKLIRDSEVKKEKS-----K-SWVEIKGKRNHPRIAEIYSKLEKLVE 502 (600)
Q Consensus 457 ~a~~~~~~m~~~~~~~~~~-----~-~~~~i~~~~~~~~~~~~~~~l~~l~~ 502 (600)
.|..++.....--....++ + .|..+.-..+||..+++...+++|++
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 7777776665311000000 0 11111122567888888887777766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=75.32 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KN-V---VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE----QT 339 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 339 (600)
....+-.+...|.+.|++++|...|+++.. |+ . .+|..+...|.+.|++++|+..++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555566666667777777777665543 21 1 34555666666677777777777776653 2221 13
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH
Q 007530 340 YISVLSACSHI--------GMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS 410 (600)
Q Consensus 340 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 410 (600)
+..+..++... |+.++|.+.|+.+.+.+ |+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 55666666666665432 321 112111111 0000000 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566788899999999999999987664 468889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00068 Score=70.53 Aligned_cols=380 Identities=14% Similarity=0.065 Sum_probs=201.4
Q ss_pred CHhHHHHHHH--HHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC-----------CC
Q 007530 32 ELSTLQATLQ--SCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ-----------RC 98 (600)
Q Consensus 32 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~ 98 (600)
|..|-..++. -|...|+.+.|..-...+. +..+|..+.+|+.+..+++-|.-.+-.|.+ .|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444443 2445677777665554432 345788888888888888877777776653 11
Q ss_pred c-chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 99 I-VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 99 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
. ..=....-...+-|..++|..+|++-.+.+ .+=+.|-..|.+++|.++-+.--+..+. .+|..-.
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 1 111112222345678888888887765532 2334455677788777765432222222 2344444
Q ss_pred HHHHHcCCHHHHHHHHccCCC-----------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 178 DVYAKCGLISDASRVFESMPE-----------------------RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~-----------------------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
.-+-..++.+.|++.|++... +|...|.-...-.-..|+.+.|+.+|...+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 444556677777777665432 2333444444444456788888887776553
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC----------cC--H
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE----------KN--V 302 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----------~~--~ 302 (600)
|-++....+-+|+.++|.++-++- -|....-.|..+|-..|++.+|...|.+... .| .
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445556667778888887775442 2555556688888888888888888876531 11 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH---------HHHHHHhcCCCccH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY---------FDLMVKQHNVLPNV 373 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~~~p~~ 373 (600)
..||.-+ .....+.-.|-.+|++. |. -+...+..|-+.|.+.+|+++ ++.+.++..-..|+
T Consensus 1011 ~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1011 RLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 2222211 11111222333333332 11 111223345556666655542 33333333333455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc---CCCCC---cchHHHHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFG---MEPDN---AGNHLLLSN 447 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~---~~~~~~l~~ 447 (600)
...+--.+.+....++++|..++-... -|..-+..| ...+..-.+++.+.|.- -+|+. ......++.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 666666666666677777766654321 122222222 23334444444444332 11111 124456777
Q ss_pred HHHhcCChHHHHHHH
Q 007530 448 IYAANRRWEEVARAR 462 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~ 462 (600)
.|.++|.+..|.+-|
T Consensus 1154 ~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHhccchHHHHHHH
Confidence 777777776665544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00013 Score=77.39 Aligned_cols=421 Identities=14% Similarity=0.033 Sum_probs=235.8
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc---chHH--HHHHHH
Q 007530 35 TLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI---VSWN--TIIGSY 109 (600)
Q Consensus 35 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~--~li~~~ 109 (600)
.|..+-..|...-+...|...|....+.. ..|...+..+.+.|++...++.|..+.-...+.+. ..|| -.--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34445555554445666677776665443 44667778888999999999999888544433221 2233 233335
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
...++..+|+.-|+...+. -|.|...|..+..+|...|....|.++|..+....+. +.+.---..-+-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 6667777777777777765 3556667777777777777777777777766554332 222222233334455666666
Q ss_pred HHHHccCCCC----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHH------
Q 007530 190 SRVFESMPER----------NEVTWSSMVAGFVQNELYEEALILFRRAQ-------VLGLEYNQFTISSVICAC------ 246 (600)
Q Consensus 190 ~~~f~~m~~~----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g~~p~~~t~~~ll~a~------ 246 (600)
...+..+... -..++-.+...+.-.|-..+|.+++++-. ......+...+..+-.+|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 6665544320 11122222222333333333333333221 111111122222111111
Q ss_pred -----------------HccCch---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hC----CHHHHHHHHh
Q 007530 247 -----------------AGLAAL---I---QGKQVHAVLCKTGFGSNMFAASSLVDMYAK----CG----CVVDAYFVFS 295 (600)
Q Consensus 247 -----------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----~g----~~~~A~~~~~ 295 (600)
-..+.. + .|.+.+- ....+..+...|..|+.-|.+ +| +...|...+.
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 111111 1 0111110 011112234444445444443 22 2234555555
Q ss_pred cCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-
Q 007530 296 GIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP- 371 (600)
Q Consensus 296 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 371 (600)
... ..+...||+|.-. ...|.+.-|...|-+-... .+-+..+|..+.-.|....+++.|...|.... .+.|
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~ 882 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPL 882 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCch
Confidence 433 3577888887655 5556666666666555443 23456788888888888999999999999875 4555
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCChHH----------HHHHHHHHhcC
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDATASMWGSLLASCRNYRNLEL----------AEIAAKQLFGM 434 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~ 434 (600)
+...|--........|+.-++..+|..- +--|+...|.....-...+|+.++ |--..++.+.-
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 4555655555555678888888888652 334566666655555555665544 33445555667
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.|+...+|...+......+.+++|.+...+..
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 89888899999888888888888888766653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-05 Score=70.10 Aligned_cols=305 Identities=12% Similarity=0.053 Sum_probs=159.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHH-HHHHHHh
Q 007530 137 TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSS-MVAGFVQ 213 (600)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~-li~~~~~ 213 (600)
-+.+++..+.+..++..+.+++..-.+..+. +....+.|...|-...++..|-..++++.. |...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3555555556666677777766666555432 445556666677777777777777766654 22222221 1234455
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHH
Q 007530 214 NELYEEALILFRRAQVLGLEYNQFTISSVICAC--AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAY 291 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 291 (600)
.+.+..|+++...|... |+...-..-+.+. ...+++..++.+.++....| +..+.+...-...+.|+.+.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 66666777766666532 2221111111111 12334444444433332211 2222223333334445555555
Q ss_pred HHHhcCCC----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 007530 292 FVFSGIEE----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367 (600)
Q Consensus 292 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 367 (600)
+-|+...+ .....||.-+.-| +.|+++.|+++..++++.|++-... ++ .|...++..+ +.-
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-----rsv 229 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-----RSV 229 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-----hcc
Confidence 55544432 2233444333222 3344455555555555544432111 00 0000000000 000
Q ss_pred CCCccHHHHHHHH-------HHHHhcCCHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 368 NVLPNVFHYSCMI-------DILGRAGLIHEAYDLILNMP----FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 368 ~~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
| .|-.-+-+.++ ..+.+.|+++.|.+-+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 230 g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 230 G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0 01112223333 34568899999999999995 23467776654322 235667777888888889999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 437 DNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
-.+.++..+.-+|++..-++-|..++-+-
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 88899999999999999999998887543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-05 Score=82.08 Aligned_cols=235 Identities=15% Similarity=0.106 Sum_probs=181.1
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC---CCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 122 FINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AM---DRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 122 ~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
|++.... -|.....|..-+......++++.|+++.+++++. ++ +.-..+|.+++++-..-|.-+...++|++..
T Consensus 1447 ferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3444443 4556677888888888999999999999988875 22 1234678888888888888888999999887
Q ss_pred CC-C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCchhHH
Q 007530 198 ER-N-EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF-GSNMFAA 274 (600)
Q Consensus 198 ~~-d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 274 (600)
+- | ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-- .......
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 63 3 456888999999999999999999999865 345667788888888888888999999998887531 1246667
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHc
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSH 349 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 349 (600)
.-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..-.+
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 7788888999999999999998764 35678999999999999999999999999998887754 345555555444
Q ss_pred cCCHHHHHHH
Q 007530 350 IGMVEKGKSY 359 (600)
Q Consensus 350 ~g~~~~a~~~ 359 (600)
.|+-+.++.+
T Consensus 1684 ~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1684 HGDEKNVEYV 1693 (1710)
T ss_pred cCchhhHHHH
Confidence 5554443333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00095 Score=76.43 Aligned_cols=220 Identities=13% Similarity=-0.022 Sum_probs=135.2
Q ss_pred HHHhcCChHHHHHHHccCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCC-C----CCChh--hHHHHHHHH
Q 007530 77 FYSKCGLISGARKVFDEMPQ----RCIVSWNTIIGSYTTNGREQEAVALFINMLREGK-T----PYSEF--TVSSVLCAC 145 (600)
Q Consensus 77 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~----~p~~~--t~~~ll~~~ 145 (600)
.....|+++.+...++.++. .+..........+...|++++|...+......-. . .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456888888888887752 2233333444555678999999999988765310 1 11111 122223445
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHccCCC-------CC--HHHHHHHHHHHH
Q 007530 146 AAKRDVFECKQLHVFALKAAMDRNV----FVGTALLDVYAKCGLISDASRVFESMPE-------RN--EVTWSSMVAGFV 212 (600)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~d--~~~~~~li~~~~ 212 (600)
...|+++.+...++...+.-...+. ...+.+...+...|++++|...+++... +. ..+++.+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999998774222222 2446677778889999999998877642 11 234556677788
Q ss_pred hCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CCC--chhHHHHHHHHH
Q 007530 213 QNELYEEALILFRRAQVL----GLE--Y-NQFTISSVICACAGLAALIQGKQVHAVLCKTG--FGS--NMFAASSLVDMY 281 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~y 281 (600)
..|++++|...+++.... +.. | ....+..+...+...|++++|...+....... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 221 1 22334444555677799999999888776531 111 122233344445
Q ss_pred HhhCCHHHHHHHHhc
Q 007530 282 AKCGCVVDAYFVFSG 296 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~ 296 (600)
...|+.+.|...+..
T Consensus 623 ~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 623 LARGDLDNARRYLNR 637 (903)
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=70.21 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=108.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 388 (600)
+..|...|+++.+..-.+.+. .|. ..+...++.+++...++..++.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 345777777766543332221 111 01223566777777777776432 4577888888889999999
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 389 IHEAYDLILNM-PFDA-TASMWGSLLASC-RNYRN--LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++..+..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998877 3444 567777777764 56676 5999999999999999999999999999999999999999999
Q ss_pred HhhhCC
Q 007530 464 LIRDSE 469 (600)
Q Consensus 464 ~m~~~~ 469 (600)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=68.00 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
....-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|...+.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999877 3344 57889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHH
Q 007530 451 ANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMK 505 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~ 505 (600)
..|+.+.|.+.|+...... ..+|+..++.+..+..+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999876532 245666666666555555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=69.14 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF 401 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 401 (600)
.+|++..+ +.|+. +.....++...|++++|...|+..+... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34443 3345556667777777777777765321 235566677777777777777777777765 22
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 402 DA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 402 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 56677777777777777777777777777777777776666655543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.7e-06 Score=69.69 Aligned_cols=107 Identities=7% Similarity=-0.142 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
.+++..+ .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455554 335653 556778889999999999999987 3444 67899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 436 PDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 436 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-05 Score=81.13 Aligned_cols=209 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
+...+...|-..+|+.+|++... +..++..|...|+..+|..+..+-.+ -+||...|..+.+..-...-
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 44455556666666666655432 34455555555655566555555554 24555555555555555555
Q ss_pred HHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
+++|.++++....+--..|+.. ..++++++++.+.|+.-.+.. +-...||..+..+..+.++++.+.+.|...+
T Consensus 473 yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv-- 546 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV-- 546 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh--
Confidence 5555555554433211111111 112444555555554433321 1122344444444444455555555444443
Q ss_pred cCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 367 HNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 367 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
...| +...||.+-.+|.+.|+..+|...+++. . ...+-.+|...+-.....|.+++|.+++.+++.
T Consensus 547 -tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 -TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 1222 2334444444444444444444444433 1 012223344444444444444444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00026 Score=68.96 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHARS--VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
+++++..++++.+ ++..+|+.-.-.+.+.|+. ++++.+++++.+.. +-|...|..-..++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455555544432 3344455443334444432 55677777776642 2245666666666677777777777777
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhc---CC----HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHH
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRA---GL----IHEAYDLILNM-PFDA-TASMWGSLLASCRNY----RNLELAEIAA 428 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~~~ 428 (600)
.+++.. .-+...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 776432 22344454444444333 22 23555555333 3344 578888888888773 3456788888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhc
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+++..+|+++.....|+.+|...
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhh
Confidence 888888999888889999999863
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0032 Score=59.27 Aligned_cols=301 Identities=8% Similarity=-0.004 Sum_probs=181.2
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCcchHHHHH---HHHHcCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHHhcCC
Q 007530 74 LINFYSKCGLISGARKVFDEMPQRCIVSWNTII---GSYTTNGREQEAVALFINMLREGKTPYSEFTV-SSVLCACAAKR 149 (600)
Q Consensus 74 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~-~~ll~~~~~~~ 149 (600)
|-..+...|++.+|+.-|....+-|...|-++. ..|...|+...|+.=|.+.++ .+||-..- ..-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcc
Confidence 344455567777777777777776666666654 356667777777777777666 45553221 11223355667
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
.++.|..-|+.+++..+..+ ....++.+.-..++-+. ....+..+...|+...|+.....+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 77777777777766543211 11112222111111111 11234445566777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHh----
Q 007530 230 LGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVV---- 303 (600)
Q Consensus 230 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---- 303 (600)
.. +.|...+..-..+|...|.+..|..=+..+-+..-. +....--+-..+...|+.+.++...++..+ ||..
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 42 346666666666777777777776666666554422 333333455666777777777777766654 3221
Q ss_pred HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 007530 304 LWNTM---------ISGFSRHARSVEVMILFEKMQQAGLHPNEQTY---ISVLSACSHIGMVEKGKSYFDLMVKQHNVLP 371 (600)
Q Consensus 304 ~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 371 (600)
.|-.+ +......+++.++++-.+...+.......+++ ..+-.++...+.+.+|++.-.++. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCc
Confidence 11111 12334567888888888888775322123333 344456677899999999988886 5567
Q ss_pred c-HHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 372 N-VFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 372 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
+ +.++.--.++|.-...+++|+.=|++.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5 778877788888888999999888876
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.8e-05 Score=76.97 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=167.3
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|-+|...|+..+|.++..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778899999999999999999975 5688889999999999999999988877 4789999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
......-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876432 1111222233478899998888753 4455 46789999888899999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCc----ccCcchHHHHHHHHH
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGK----RNHPRIAEIYSKLEK 499 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~l~~ 499 (600)
|.+.|...+.++|++...++.++.+|.+.|+-.+|...+++..+-+-. .|....++ ..-+..+++.....+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876622 33333333 344555665544444
Q ss_pred H
Q 007530 500 L 500 (600)
Q Consensus 500 l 500 (600)
+
T Consensus 613 l 613 (777)
T KOG1128|consen 613 L 613 (777)
T ss_pred H
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.2e-05 Score=70.02 Aligned_cols=182 Identities=12% Similarity=-0.007 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CH---hHH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG-S-NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NV---VLW 305 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~ 305 (600)
.....+......+...|+++.|...+..+.+..-. + ....+..+...|.+.|++++|...|+++.+ | +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567777888899999999999999999886421 1 124667789999999999999999998864 2 12 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 007530 306 NTMISGFSRH--------ARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHY 376 (600)
Q Consensus 306 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 376 (600)
..+..++.+. |+.++|++.|+++... .|+.. ....+... .. . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HHH
Confidence 5555566554 7889999999999875 45532 22111111 00 0 0000 0 012
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
..+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788889999998888776 3233 356888888999999999999998888766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.6e-05 Score=75.61 Aligned_cols=245 Identities=13% Similarity=0.052 Sum_probs=163.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHH
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDA 290 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 290 (600)
+.++|+..+|.-.|+...... +-+...|.-|....+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777666542 2244566666666666666666777776666654 44566666677777777777777
Q ss_pred HHHHhcCCCcC-HhHHHHHH---------HHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007530 291 YFVFSGIEEKN-VVLWNTMI---------SGFSRHARSVEVMILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
.+.++.-.... ...|...- +.+..........++|-++.. .+..+|......|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77766542100 00000000 111222233455566666544 45346666666666667888999999999
Q ss_pred HHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 360 FDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA-SMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 360 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
|+.++. +.| |...||.|...++...+.++|...|++. .++|.. .++..|.-+|...|.+++|...+-.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999974 456 7789999999999999999999999887 778884 5888899999999999999999999987654
Q ss_pred CC----------cchHHHHHHHHHhcCChHHHHH
Q 007530 437 DN----------AGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 437 ~~----------~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
.. ..++..|-.++...++.|-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 41 1355566566666666654433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00014 Score=65.85 Aligned_cols=155 Identities=9% Similarity=0.049 Sum_probs=112.0
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 357 (600)
+-.|...|+++.+....+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777766554443322211 01223566778888888877753 456778888888999999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHH-HHhcCC--HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDI-LGRAGL--IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
..|+...+.. +.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887432 2366777777776 467777 58999999887 3444 57788888899999999999999999999
Q ss_pred cCCCCCcchHH
Q 007530 433 GMEPDNAGNHL 443 (600)
Q Consensus 433 ~~~p~~~~~~~ 443 (600)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 98887665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.1e-05 Score=74.83 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=65.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 104 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
+|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++..+ .+..........+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 34444445566666666666665542 23 233345555555555556666555554432 2445555555556666
Q ss_pred CCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 184 g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
++.+.|.++.+++.+ | +-.+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666554 3 33466666666666666666666666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00011 Score=78.89 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=111.7
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYS 377 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 377 (600)
.++..+-.|.....+.|..++|..+++...+ +.||.. ....+...+.+.+.+++|....+.... ..| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577788888888899999999999999888 467654 566778888999999999999998863 244 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 378 CMIDILGRAGLIHEAYDLILNMP-FDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
.+..++.+.|++++|..+|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+....|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88888999999999999999872 2344 788999999999999999999999999986655444444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-06 Score=52.99 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ 236 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 236 (600)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-05 Score=67.93 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 007530 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSL 411 (600)
Q Consensus 334 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 411 (600)
.|+......+-.++...|+-+....+...... .-..|......++....+.|++.+|...+++. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333224455566666777776666665532 22334455556777777788888888777776 345667788888
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 412 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
..+|.+.|+++.|...+.+++++.|+++..++.|+..|.-.|+.++|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888888888888777666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-06 Score=52.74 Aligned_cols=34 Identities=35% Similarity=0.719 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00061 Score=74.14 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=128.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCC
Q 007530 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215 (600)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 215 (600)
..+..|+..+...+++++|.++.+..++..+. ....|-.+...|.+.++.+++..+ .++.......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 34444444444445555555554443333221 222222233345555554443332 2333333444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 216 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
++.-+..+...|... .-+...+-.+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 443333344444432 2233456666777777777777777777777776 66777788888888887 8888877766
Q ss_pred cCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 007530 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVF 374 (600)
Q Consensus 296 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 374 (600)
+. +..|...+++.++.++|.++... .|+.+. |..+++ .+....+..--+.
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~ 224 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVG 224 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHH
Confidence 54 23366677888899999988875 344332 222322 2222222223333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCR 416 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 416 (600)
++--+...|-..++++++.++++.+ ...| |.....-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 5555566667777777877777766 3233 3445555555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.012 Score=59.00 Aligned_cols=389 Identities=13% Similarity=0.108 Sum_probs=197.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 141 (600)
+-|..+|+.||.-+... .++++++.++++.. | ....|..-|..-....+++....+|.+-+..- + +...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h--hHhHHHHH
Confidence 66889999999988665 99999999998875 3 45679999999999999999999999887753 3 45556555
Q ss_pred HHHHhc-CCChHHHH----HHHHHHH-HhCCCCCh-hHHHHHHHH---------HHHcCCHHHHHHHHccCCC-C-----
Q 007530 142 LCACAA-KRDVFECK----QLHVFAL-KAAMDRNV-FVGTALLDV---------YAKCGLISDASRVFESMPE-R----- 199 (600)
Q Consensus 142 l~~~~~-~~~~~~a~----~~~~~~~-~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~f~~m~~-~----- 199 (600)
+.--.+ .++....+ +.|+.++ +.|+++-. ..|+..+.. |....+++..+++++++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 554433 23333322 3344333 34544332 235554443 3445567778888888764 2
Q ss_pred ----CHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCchHHHHH--HHHHHHH
Q 007530 200 ----NEVTWSSMVAGFV-------QNELYEEALILFRRAQV--LGLEYNQFTISSVICACAGLAALIQGKQ--VHAVLCK 264 (600)
Q Consensus 200 ----d~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~--~~~~~~~ 264 (600)
|-..|..=|+... +...+..|.+++++... .|+.-+..+ .-..|-.++..+ ++...++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHH
Confidence 2223322222221 13345667777776653 344333222 011111111111 1111111
Q ss_pred -----------------------------hCCCCchhHH-----HHHHHHHHhhCCHHH-------HHHHHhcCCC----
Q 007530 265 -----------------------------TGFGSNMFAA-----SSLVDMYAKCGCVVD-------AYFVFSGIEE---- 299 (600)
Q Consensus 265 -----------------------------~~~~~~~~~~-----~~l~~~y~~~g~~~~-------A~~~~~~~~~---- 299 (600)
.+..|++... ...-+.+...|+..+ +..++++...
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1222221110 011122222333222 2222222111
Q ss_pred cCHhHHHHHHHHHH---hcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHH
Q 007530 300 KNVVLWNTMISGFS---RHARSVEVMILFEKMQQAG-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVF 374 (600)
Q Consensus 300 ~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 374 (600)
.+..+|..+..--- .-+..+...+.+++....- +.|+ .+|..+++.-.+..-++.|..+|.++.+ .+..+ ++.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVf 403 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhh
Confidence 11122222211100 0012334444444444321 2222 3455566666666666677777776643 34444 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcC--CCC-CcchHHHHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGM--EPD-NAGNHLLLSNIY 449 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~ 449 (600)
++++++.-|+ .++.+-|.++|+-- ..-+| +..-...+.-+...++-..+..+|++++.. .|+ ....|..++.--
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 6666666443 45566666666532 21223 333345555556666666677777776653 332 224556666656
Q ss_pred HhcCChHHHHHHHHHhhh
Q 007530 450 AANRRWEEVARARKLIRD 467 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~ 467 (600)
+.-|+...+.++-+++..
T Consensus 483 S~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 666666666666555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00069 Score=66.87 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=77.4
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~ 425 (600)
...|.+++|+..++.+++. .+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+|.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3456777777777776542 2335555566666777777777777777665 34454 556666677777777777777
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.++.....-+|+++..|..|+.+|...|+..++...+.++.
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777777777777777777777777777776666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0015 Score=63.80 Aligned_cols=177 Identities=12% Similarity=-0.008 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
++.+-..+...++.++|+.++.++++.. |-+..+|+.--.++...+ +++++...++.+.+..++ +..+|+...-++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 4444445556677777777777777752 334444555444555555 467777777777776544 555566555455
Q ss_pred HHcCCH--HHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---Cch
Q 007530 181 AKCGLI--SDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL---AAL 252 (600)
Q Consensus 181 ~~~g~~--~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~~ 252 (600)
.+.|+. +++..+++.+.+ +|..+|+.....+.+.|+++++++.+.++.+.+.. |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555542 556666665543 46677777777777778888888888888776532 334444333333332 111
Q ss_pred ----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007530 253 ----IQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283 (600)
Q Consensus 253 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 283 (600)
+........++... +.|...|+-+...+..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 23333333444432 3445555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00023 Score=64.50 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=83.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
+-..+...|+.+....+....... -.-|.......+....+.|++.+|...+++... .-++|...|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334445555555555555443321 111222333355555556666666666666542 33455666666666666666
Q ss_pred CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007530 388 LIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 388 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
++++|..-|.+. .+.| ++...+.|...+.-.|+++.|+.++.......+.+..+-..|.-+-...|++++|..+
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666555544 2222 3455566666666666666666666666666665666666666666666666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.2e-05 Score=64.35 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556666777778888887777765 3233 56777777778888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHhhhCC
Q 007530 451 ANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~ 469 (600)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888776643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=8e-05 Score=74.00 Aligned_cols=122 Identities=13% Similarity=0.045 Sum_probs=95.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~ 417 (600)
..+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. . .+.+...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566666777788888888887543 254 3445677777777777887777765 2 22356667777777888
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.++++.|..+++++.++.|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.3e-06 Score=50.40 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=64.33 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=116.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSC 378 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 378 (600)
....+....-.+...|++++|+..++.+... .||..- .......+...++.++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 3444444555667789999999999998885 555544 44556678899999999999999974 3565 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 379 MIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
+.++|.+.|++++|..+++.. ..+.|+..|..|..+|...|+..++.. ..+..|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHH
Confidence 889999999999999999887 344578999999999999998776554 4556688899999
Q ss_pred HHHHHHHHhhhCC
Q 007530 457 EVARARKLIRDSE 469 (600)
Q Consensus 457 ~a~~~~~~m~~~~ 469 (600)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-05 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0012 Score=71.82 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=156.9
Q ss_pred cCCCCC-CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHH
Q 007530 26 ANANAT-ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWN 103 (600)
Q Consensus 26 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 103 (600)
.+...| +...+..|+..+...++++.|.++.+..++. .|+ ...|-.+...|.+.++.+++..+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------- 87 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------- 87 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------
Confidence 334444 5567888888888889999999988866554 333 22333333356666665554444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc
Q 007530 104 TIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKC 183 (600)
Q Consensus 104 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 183 (600)
.++..+....++.-..-+...|.. .+-+...+..+..+|.+.|+.+++..+++++++..+ .|+.+.|.+.-.|+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh
Confidence 344445555566334444445554 345667889999999999999999999999999984 4889999999999999
Q ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
++++|++++.+. +..|...+++.++.+++.++... .|+.+.+ -.++.+.+.
T Consensus 164 -dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~ 214 (906)
T PRK14720 164 -DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVL 214 (906)
T ss_pred -hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHH
Confidence 999999887654 33477788899999999998875 3433222 112222222
Q ss_pred Hh-CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHH
Q 007530 264 KT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFS 313 (600)
Q Consensus 264 ~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 313 (600)
.+ |..--..++-.|-..|.+.++++++..+|..+.+ .|..+..-++..|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22 2233344455566667777777777777776653 34455555666555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0012 Score=71.20 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=82.2
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
++..+-.|.....+.|.+++|..+++...+. -|-+..........+.+.+.+++|....++.++..+. +....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 4556666666666667777777777766664 3444455566666666667777777766666666543 555566666
Q ss_pred HHHHHcCCHHHHHHHHccCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPER---NEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..+.+.|++++|..+|++...+ +..+|..+...+...|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666667777777777666532 245666666666667777777777766654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.012 Score=53.79 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE 337 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 337 (600)
+.+.+.......+......-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|...+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 33444444434443444444455667777777777776643333333332 2344556667777777777652 245
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 007530 338 QTYISVLSACSH----IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSL 411 (600)
Q Consensus 338 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 411 (600)
.|.+-|..++.+ .+.+..|.-+|++|.+ ...|+..+.+-+..+....|++++|+.++++. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 566555555443 3456667777777743 24566666666666666667777777666655 222345555555
Q ss_pred HHHHHHcCCh-HHHHHHHHHHhcCCCCCc
Q 007530 412 LASCRNYRNL-ELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 412 l~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 439 (600)
+......|.. +-..+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5544444433 444455566666666543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00064 Score=57.55 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=84.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 007530 324 LFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF 401 (600)
Q Consensus 324 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 401 (600)
++++... ..|+. .....+...+...|++++|.+.|+.+.... +.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444 34433 345556667778888999988888886432 336677788888888889999998888776 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 402 DA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 402 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677888888888999999999999999999998764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.066 Score=57.12 Aligned_cols=378 Identities=14% Similarity=0.080 Sum_probs=184.0
Q ss_pred hcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007530 80 KCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (600)
+.|+.++|..+++.... .|..|...+-.+|...|+.++|..+|++..+. -|+......+..++.+.+++.+-.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666654432 25556666666666666666666666666554 2445556666666666666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHcC----------CHHHHHHHHccCCCCC--HHH---HHHHHHHHHhCCCHHHHH
Q 007530 157 LHVFALKAAMDRNVFVGTALLDVYAKCG----------LISDASRVFESMPERN--EVT---WSSMVAGFVQNELYEEAL 221 (600)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~~~f~~m~~~d--~~~---~~~li~~~~~~g~~~~A~ 221 (600)
+--++-+. ++.+.+.+=++++.+...- -+.-|.+.++.+.+.+ ..+ .-.-....-..|.+++|+
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 54444443 2224444334444443321 1234555555554432 000 011112233456677777
Q ss_pred HHHH-HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------------h
Q 007530 222 ILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK----------------C 284 (600)
Q Consensus 222 ~~~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----------------~ 284 (600)
+++. ...+.-..-+...-+--+..+...+++.+..++-.+++..|... |...++.+.+ .
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~ 286 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLS 286 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhh
Confidence 7773 33332222233344455555666677777777777776665322 2222222211 1
Q ss_pred CCHHHHHHHHhcCCC---cCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 285 GCVVDAYFVFSGIEE---KNVV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 285 g~~~~A~~~~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
+.++...+..++... +++. ++--+..-+-.-|+.++++..|-+- -|-.| .+..=+..|...=..++-..++
T Consensus 287 ~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 287 KSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHH
Confidence 222222222222211 1211 1222222233456666655444322 12222 1111122222222223333333
Q ss_pred HHHHHhcCCCccHH-------HHHHHHHHHHhcCCH-----HHHHHHHHcC------C------CCCCH---------HH
Q 007530 361 DLMVKQHNVLPNVF-------HYSCMIDILGRAGLI-----HEAYDLILNM------P------FDATA---------SM 407 (600)
Q Consensus 361 ~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m------~------~~p~~---------~~ 407 (600)
..... ..++.. -+.+.+....-.|.+ +.-..++++. + .-|.. .+
T Consensus 362 ~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLa 438 (932)
T KOG2053|consen 362 SKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLA 438 (932)
T ss_pred HHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHH
Confidence 33321 111111 122222222222311 1112222111 1 11211 24
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccC
Q 007530 408 WGSLLASCRNYRNLE---LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKE 473 (600)
Q Consensus 408 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 473 (600)
-+.|+..|.+.++.. +|+.+++..+...|.|+.+-..|+.+|.-.|-...|.+.++.+.-+.|..+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 467778888877754 667777777888999988888999999999999999999999876666544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.038 Score=53.84 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 007530 274 ASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMV 353 (600)
Q Consensus 274 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 353 (600)
.+.-+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-..+... .- .++.|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCH
Confidence 333455566788999999999998889999999999999999999877665432 12 347888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 354 EKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 354 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999888763 1244678889999999998775553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.6e-05 Score=46.67 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=26.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREG 129 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 129 (600)
++||++|++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 478999999999999999999999998876
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.4e-05 Score=46.80 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGL 232 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 232 (600)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=56.77 Aligned_cols=83 Identities=18% Similarity=0.034 Sum_probs=42.0
Q ss_pred HHHHhcCCHHHHHHHHHcCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 381 DILGRAGLIHEAYDLILNMP-FDATA----SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
..+...|++++|...|+... ..||. .....|...+...|++++|+..++.. .-.+-.+..+..++++|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 44444555555555554441 11221 12333444455555555555555442 12222344556677777777777
Q ss_pred HHHHHHHHH
Q 007530 456 EEVARARKL 464 (600)
Q Consensus 456 ~~a~~~~~~ 464 (600)
++|...|+.
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 777776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0017 Score=55.66 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh--hHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYS---EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNV--FVGTAL 176 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l 176 (600)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44455554 3677777777777777753 323 122333445666777777777777777776533322 234446
Q ss_pred HHHHHHcCCHHHHHHHHccCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007530 177 LDVYAKCGLISDASRVFESMPER--NEVTWSSMVAGFVQNELYEEALILFRR 226 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~m~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (600)
...+...|++++|...++....+ ....+......|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777777788877777665443 334555666777777777777777764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0081 Score=54.79 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=75.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC-CHHHHHHHHHHHHh-
Q 007530 136 FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER-NEVTWSSMVAGFVQ- 213 (600)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~- 213 (600)
.....-...|...+++++|.+..... - +..+...=+..+.+..+++-|++.++.|.+- +..+.+.|..++.+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~l 182 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKL 182 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 33334444567777777777665441 1 2233333344455667777777777777764 33445544444433
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 214 ---NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 214 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
.+...+|.-+|++|-+. ..|+..+.+....++...|++++|..++..++...
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 45577777777777543 46777777777777777777777777777776654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.066 Score=53.89 Aligned_cols=432 Identities=11% Similarity=0.091 Sum_probs=252.8
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcchHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTI 105 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l 105 (600)
.+|-|..+|+.+++-+... ..++++..++++... ++..+..|..-|..-.+..+++...++|.+... -++..|..-
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4566889999999987766 789999999999853 466788999999999999999999999998654 478888887
Q ss_pred HHHHHc-CCChhH----HHHHHHHHHH-cCCCCCCh-hhHHHHH---HH------HhcCCChHHHHHHHHHHHHhCCCCC
Q 007530 106 IGSYTT-NGREQE----AVALFINMLR-EGKTPYSE-FTVSSVL---CA------CAAKRDVFECKQLHVFALKAAMDRN 169 (600)
Q Consensus 106 i~~~~~-~g~~~~----A~~~~~~m~~-~g~~~p~~-~t~~~ll---~~------~~~~~~~~~a~~~~~~~~~~g~~~~ 169 (600)
|+---+ +|+... ..+.|+-.+. .| +.+-. ..|+.-+ .. +....+++..++++.+++..-+..-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 764333 233322 2333333333 33 32221 2233332 22 2333456667777777765432211
Q ss_pred hhHHHH------HHHH-------HHHcCCHHHHHHHHccCCC------C---------------CHHHHHHHHHHHHhCC
Q 007530 170 VFVGTA------LLDV-------YAKCGLISDASRVFESMPE------R---------------NEVTWSSMVAGFVQNE 215 (600)
Q Consensus 170 ~~~~~~------li~~-------y~~~g~~~~A~~~f~~m~~------~---------------d~~~~~~li~~~~~~g 215 (600)
...|+- =|+- --+...+-.|++++++... + -+..|-.+|.-=..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 112221 1110 0122334556666554321 0 1122444443322221
Q ss_pred CH--------HHHHHHHHHH-HHcCCCCCHHH-HHHH----HHHHHccCc-------hHHHHHHHHHHHHhCCCCchhHH
Q 007530 216 LY--------EEALILFRRA-QVLGLEYNQFT-ISSV----ICACAGLAA-------LIQGKQVHAVLCKTGFGSNMFAA 274 (600)
Q Consensus 216 ~~--------~~A~~~~~~m-~~~g~~p~~~t-~~~l----l~a~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~ 274 (600)
.- ....-.+++. .-.+.-|+..- +... -..+...|+ -+++..+++..+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222221 12233343321 1111 112333343 34445555555544333344444
Q ss_pred HHHHHHHHhhCC---HHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 007530 275 SSLVDMYAKCGC---VVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSA 346 (600)
Q Consensus 275 ~~l~~~y~~~g~---~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 346 (600)
.++.+.--..-+ .+.....+++.. ..-..+|-..++.-.+..-...|..+|.+..+.+..+ +.....+++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 444332111111 333333333333 2233567777777777777899999999999998888 56667777776
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCh
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM---PFDAT--ASMWGSLLASCRNYRNL 421 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~ 421 (600)
++ .++.+.|.++|+.=.+.+|-.| ..-.+.++-+...++-..|..+|++. .+.|| ..+|..++.--..-|++
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 65 4889999999998877665443 45577889999999999999999987 23344 47999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 422 ELAEIAAKQLFGMEPDN----AGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
..+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 99999988887654421 123345566676666655444444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00041 Score=53.94 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344556666777777777777765 2233 34566777777777888888888888888888887778888888888888
Q ss_pred ChHHHHHHHHHhhh
Q 007530 454 RWEEVARARKLIRD 467 (600)
Q Consensus 454 ~~~~a~~~~~~m~~ 467 (600)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.032 Score=50.68 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=92.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
-..|++++|+++++...+.. +-|.+++.-=+...-..|.--+|++-+....+. +.-|.+.|.-+.+.|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 44688889999999888864 445666665555555567777888877777653 467888999999999999999999
Q ss_pred HHHHHcC-CCCCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCcch
Q 007530 393 YDLILNM-PFDAT-ASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 393 ~~~~~~m-~~~p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.-.++++ -+.|. +..+..+...+.. ..+++.+.+.+.+++++.|.+...
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 9888887 34454 4444445444433 457889999999999999965543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.6e-05 Score=57.97 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
.|..+..++...|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 333344444444555555555544 444444444555556666666666666666653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00082 Score=67.12 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChH
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 422 (600)
..+...|++++|+..|+.+++.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 33445566666666666665321 123445555555555666666666555554 2223 3445555555555566666
Q ss_pred HHHHHHHHHhcCCCCCcchHHHH
Q 007530 423 LAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 423 ~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
.|...++++++++|+++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666666555444333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=53.45 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHhhh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR-RWEEVARARKLIRD 467 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 467 (600)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999987764
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00098 Score=54.84 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=46.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHH
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASC 415 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 415 (600)
.+...+...|++++|.+.|..+.+..+-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543221111 1223333444455555555555555443 11111 33455555555
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
...|+.+.|...++++++..|+++.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChh
Confidence 5566666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0007 Score=62.74 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~ 423 (600)
..+.+++++|+..|..++ .+.| |...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456688888888888876 3455 5666666677888888888887776655 55665 5689999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
|++.|+++++++|++......|-.+--+.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 99999999999999986555555444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=54.76 Aligned_cols=95 Identities=12% Similarity=-0.058 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLS 446 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 446 (600)
++-.++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 5566778889999999999999887 22333 3467778889999999999999999999988875 45688999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCC
Q 007530 447 NIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 447 ~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 99999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00028 Score=50.91 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=49.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++...+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567788999999999999999999999999999999999999999999998886543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.006 Score=63.73 Aligned_cols=139 Identities=13% Similarity=0.008 Sum_probs=62.2
Q ss_pred CcCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Q 007530 299 EKNVVLWNTMISGFSR--HA---RSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHI--------GMVEKGKSYFDLMV 364 (600)
Q Consensus 299 ~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 364 (600)
..|..+|...+.+... .+ ...+|+.+|++..+. .|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3567778877776443 22 266888888888874 5663 3333332222110 01112222222211
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.......+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 10011122233444433333344444444444443 2334444444444444444444444444444444444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.12 Score=53.55 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=37.4
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
++.+|.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .| ...+..|..+.++.+|
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHH
Confidence 33444444444444444444443 23344556666667777777766654321 11 1234556666666666
Q ss_pred HHHH
Q 007530 256 KQVH 259 (600)
Q Consensus 256 ~~~~ 259 (600)
.++-
T Consensus 898 vela 901 (1189)
T KOG2041|consen 898 VELA 901 (1189)
T ss_pred HHHH
Confidence 5553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=57.29 Aligned_cols=94 Identities=11% Similarity=-0.114 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3445566666777778888888887765 22222 347888888999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHh
Q 007530 447 NIYA-------ANRRWEEVARARKLI 465 (600)
Q Consensus 447 ~~~~-------~~g~~~~a~~~~~~m 465 (600)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 777777666555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.002 Score=57.20 Aligned_cols=80 Identities=11% Similarity=-0.003 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA---T-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
.+..+...+.+.|++++|...|++. ...| + ...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555556666666655544 1111 1 356777777888888888888888888888888888888888888
Q ss_pred HhcCC
Q 007530 450 AANRR 454 (600)
Q Consensus 450 ~~~g~ 454 (600)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0062 Score=58.60 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA-CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+..++.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467777888888888889999999887543 2223334333333 333577778999999998765 456668889999
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-...|+++....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999876 22233 35999999999999999999999999999877744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0053 Score=52.25 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=75.8
Q ss_pred HHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 380 IDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
..-+-..|++++|..+|+-+ -..-+..-|..|...+...++++.|...+..+..++++||.++...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455789999999988876 1123566788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 007530 458 VARARKLIRD 467 (600)
Q Consensus 458 a~~~~~~m~~ 467 (600)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988876
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.02 Score=51.87 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=119.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL-SACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
-++-+....|+.+.|...++++... + |...-...+- --+-..|++++|.++++.++++. +.|..++--=+...-.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHH
Confidence 3444556678888899999888776 3 5433222221 12345689999999999998653 4466777766777777
Q ss_pred cCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---ChHHHHH
Q 007530 386 AGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR---RWEEVAR 460 (600)
Q Consensus 386 ~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~ 460 (600)
.|+.-+|++-+.+. .+..|...|..|...|...|+++.|.-.+++++=+.|.++..+..++..+.-.| +.+-+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88877887776665 456799999999999999999999999999999999999999999999886665 4556677
Q ss_pred HHHHhhhCC
Q 007530 461 ARKLIRDSE 469 (600)
Q Consensus 461 ~~~~m~~~~ 469 (600)
.+.+..+-.
T Consensus 213 yy~~alkl~ 221 (289)
T KOG3060|consen 213 YYERALKLN 221 (289)
T ss_pred HHHHHHHhC
Confidence 776665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=61.19 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
-+.+.+++++|.+.|.+. .+.| |++.|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356788999999999876 5555 67788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhC
Q 007530 460 RARKLIRDS 468 (600)
Q Consensus 460 ~~~~~m~~~ 468 (600)
+.|++..+-
T Consensus 170 ~aykKaLel 178 (304)
T KOG0553|consen 170 EAYKKALEL 178 (304)
T ss_pred HHHHhhhcc
Confidence 999877653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0064 Score=53.91 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=87.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN--EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYS 377 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 377 (600)
....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 445677777778888999999999988876543332 356777777888888889988888888643 33 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 378 CMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
.+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777777665554332221 123677888999999988875 4555555555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.17 Score=49.42 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
.+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..|+|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355556677778888888777754 4454 8899999999999999999999988764 3355788999999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
.|+..+|.....++ .+..-..+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888772 1145678899999999998875443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0044 Score=61.92 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=79.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcC
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAG 387 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 387 (600)
...+...|++++|+++|++.++.. +-+...|..+..+|...|++++|+..++.+++. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 455677899999999999998853 235667778888999999999999999999743 34 5677888889999999
Q ss_pred CHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q 007530 388 LIHEAYDLILNM-PFDATASMWGSLLAS 414 (600)
Q Consensus 388 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 414 (600)
++++|...|++. ...|+......++..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999886 445554444444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=50.72 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHH
Q 007530 315 HARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 392 (600)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+ ..| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666666422 12333344456666666666666666655 11 112 122222335556666666666
Q ss_pred HHHHHc
Q 007530 393 YDLILN 398 (600)
Q Consensus 393 ~~~~~~ 398 (600)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.075 Score=54.50 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=103.8
Q ss_pred HHHHHHHHhcCCChHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCC
Q 007530 138 VSSVLCACAAKRDVFECK--QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNE 215 (600)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 215 (600)
++..=.+|.+.++..--+ .-++.+.++|-.|+... +...++-.|++.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 333344455444443322 23455666676666553 44556667888888888754 45
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 216 LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 216 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
.-..|+++|..|.-- -...-+...|..++-+.+...-.+. .-++.--.+...++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 666677766665421 1122233334433333332221111 111111122344555566666655442
Q ss_pred cCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 007530 296 GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 296 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
..+|-.+-++++-+++.. .+..+...+...+-+...+..|-++|..|-.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 233434444444444322 2344555555555666777777888877631
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
...++++....+++.+|..+-++.|
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCc
Confidence 2356777778888888888888775
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=49.62 Aligned_cols=91 Identities=20% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....+.... +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 4445555666666666666666665542 333344444555555555555555555555544322 2234444444455
Q ss_pred HcCCHHHHHHHHcc
Q 007530 182 KCGLISDASRVFES 195 (600)
Q Consensus 182 ~~g~~~~A~~~f~~ 195 (600)
..|+.++|...|..
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0057 Score=52.53 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC---CHHHH
Q 007530 334 HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV-LPNVFHYSCMIDILGRAGLIHEAYDLILNMP-FDA---TASMW 408 (600)
Q Consensus 334 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 408 (600)
.|+...-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...++++. ..| .+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444445555555555555555555431 22 2234444444444444555555555444431 111 11222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
-.+...+...|.+..|+..|+.++.--|. +.........+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 33344444455555555555555554443 2233344444455554444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00082 Score=48.94 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++++++.+|+++..+..++.+|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888888888888888777643
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.007 Score=47.59 Aligned_cols=81 Identities=15% Similarity=0.026 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------chHHHHHHHHHHHHhCCCCchhH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGL-EYNQFTISSVICACAGLA--------ALIQGKQVHAVLCKTGFGSNMFA 273 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 273 (600)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777788999999999999999999 999999999999887643 34456778888998899999999
Q ss_pred HHHHHHHHHh
Q 007530 274 ASSLVDMYAK 283 (600)
Q Consensus 274 ~~~l~~~y~~ 283 (600)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0083 Score=50.85 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+......+...+.+.|++++|..+|+.+.... +-+..-|..|..+|-..|++++|...+..+....+. |+..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 33344444444555666666666666655542 334445555555555566666666666666555532 555555555
Q ss_pred HHHHHcCCHHHHHHHHcc
Q 007530 178 DVYAKCGLISDASRVFES 195 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~ 195 (600)
.+|.+.|+.+.|++.|+.
T Consensus 111 ~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 111 ECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666666666666655554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.022 Score=50.19 Aligned_cols=110 Identities=13% Similarity=0.036 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN--EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM 379 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 379 (600)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++...+.. +.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 45667777777788888888888888876532222 2467777778888888888888888876432 1223445555
Q ss_pred HHHHH-------hcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 380 IDILG-------RAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 380 i~~~~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
...|. +.|++++|... +++|..++++.++.+|.+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 33333333322 345667777777787753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0063 Score=61.02 Aligned_cols=119 Identities=12% Similarity=0.103 Sum_probs=82.6
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC----CCHHHH
Q 007530 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA--AMDRNVFVGTALLDVYAKCGLISDASRVFESMPE----RNEVTW 204 (600)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~ 204 (600)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++++.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4556667777777777777777777776666554 2222334556777777777777777777766443 677777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL 249 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 249 (600)
|.|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777776666777777666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.015 Score=54.52 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=84.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
+-|.+.|-.|...|.+.|+...|..-|.+. .+. +++..+..+..++.. .....++..++++++.++|.+......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 347888999999999999999999988876 233 456666666666544 345788999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
|+..+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.097 Score=49.11 Aligned_cols=57 Identities=12% Similarity=-0.037 Sum_probs=33.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (600)
.+..-|.+.|.+..|..-++.+++.+.-.| ..+....++.+|...|..++|.+....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344556666666666666666666554333 334455566666666766666665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=48.91 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..+...++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999998887654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.027 Score=54.38 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m 227 (600)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 344555555666655555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.44 Score=50.14 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 352 (600)
+.+--+.-+..-|+...|.++-.+.+-||-..|-.=+.+++..+++++-+++-+.++ .+..|..+..+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 334445556677889999999999888998888888899999999887666655543 24567778889999999
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 007530 353 VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (600)
.++|.+++-+.. |.. -.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 999999887652 221 467888999999988876544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=47.83 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 379 MIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677788888888888776 3345 467888888888888999999999999988888764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0073 Score=58.13 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=90.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA-CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
.+|-.+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 357777777777777888888888887553 2233344433333 23356677788888888887 5557788888888
Q ss_pred HHHHcCCHHHHHHHHccCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 179 VYAKCGLISDASRVFESMPER------NEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
...+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999887652 2357888888888888888888888888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.013 Score=46.09 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHhcCCCccHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGL-HPNEQTYISVLSACSHIG--------MVEKGKSYFDLMVKQHNVLPNVF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 374 (600)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+++.|+ ..+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 334456666777999999999999999999 899999999999877633 3456778889987 458999999
Q ss_pred HHHHHHHHHHh
Q 007530 375 HYSCMIDILGR 385 (600)
Q Consensus 375 ~~~~li~~~~~ 385 (600)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.021 Score=55.38 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=113.2
Q ss_pred hHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHhcCCCccHHHHH--
Q 007530 303 VLWNTMI-SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS--ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-- 377 (600)
Q Consensus 303 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 377 (600)
.+|-.+- ..+...|+.++|...--...+.. ++ ..+..+++ ++-..++.+.|...|++.+ .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 4444432 34667788888888776666542 11 12222222 2334678888888888775 4455432211
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHcC-CC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 378 -----------CMIDILGRAGLIHEAYDLILNM-PF-----DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 378 -----------~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
-=..-..+.|++.+|.+.+.+. .+ +|+...|........+.|+.++|+.-.+.+++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 1123456789999999999876 33 445666777777788899999999999999999999888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.|..-++++...++|++|.+-++...+..
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999998876543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.061 Score=51.97 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCcc--HH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLH-----PNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQH-NVLPN--VF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 374 (600)
.+..+...+.+.|++++|+++|++....... ++.. .|...+-++...||+..|.+.++...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445566677888888888888887664322 1221 22333335556688888888888765322 23222 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHcCC
Q 007530 375 HYSCMIDILGR--AGLIHEAYDLILNMP 400 (600)
Q Consensus 375 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 400 (600)
....|++++-. ...+++|..-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666643 345666766676663
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0063 Score=54.09 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=75.6
Q ss_pred HHHHhcC--CCcCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 007530 291 YFVFSGI--EEKNVVLWNTMISGFSR-----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI------------- 350 (600)
Q Consensus 291 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 350 (600)
...|+.. ..+|-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 35677777777777764 366777777888899999999999999999876442
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 007530 351 ---GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388 (600)
Q Consensus 351 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 388 (600)
.+.+-|++++++| +.+|+.||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2457789999999 688999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.098 Score=45.21 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=107.0
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--Cc
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM---PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NA 439 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~ 439 (600)
++..+.|++..--.|...+.+.|+..||...|++. ++.-|....-.+..+....++...|...++++.+..|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 44466788888888999999999999999999887 45567888888999999999999999999999997774 56
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHH
Q 007530 440 GNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKK 506 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~ 506 (600)
.....++..|...|++.+|...|+...+.-..+...+.+.++- .+.++..++-..+.++.+..++
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~L--a~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEML--AKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHH--HHhcchhHHHHHHHHHHHHHHh
Confidence 6778899999999999999999998887543343344443322 2345555555556667766543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=58.92 Aligned_cols=120 Identities=10% Similarity=0.024 Sum_probs=76.0
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC----cCHhH
Q 007530 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT--GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE----KNVVL 304 (600)
Q Consensus 231 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~ 304 (600)
+.+.+...+..+++.+....+++.+..++...... ....-..+..+++..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455666666666666666666666666666554 2222233445677777777777777776665332 56677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 350 (600)
+|.++..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666665544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0041 Score=59.96 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHH---HHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CC-CCCH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLM---VKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-------PF-DATA 405 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~ 405 (600)
..|..|.+.|.-.|+++.|+..++.- .+++|-.. ....+..+..++.-.|+++.|.+.|+.- +. .-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666677788999999887653 23445333 3456777888899999999999888753 21 2245
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhc----CC--CCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFG----ME--PDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+..+|...|....+++.|+..+.+=+. ++ -.....+..|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6777899999999999999998877554 22 1235688899999999999999998766554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.027 Score=50.22 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHc-----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHH
Q 007530 233 EYNQFTISSVICACAG-----LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNT 307 (600)
Q Consensus 233 ~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 307 (600)
..|..+|..++..+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -.. .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n-----------~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRN-----------FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-ccc-----------HHHH
Confidence 3455555555555543 35566666667777777888888888888877654 2221 011 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM 352 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 352 (600)
+..- ...+.+-|++++++|...|+.||..|+..+++.+++.+.
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 124567899999999999999999999999999977553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.33 Score=45.58 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007530 378 CMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
.+...|.+.|.+..|..-++.+ |..| .......+..++...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455677777776665555544 4333 2445666777777788888777766554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=48.25 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHH
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWG 409 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 409 (600)
..|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|..+++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 4566666666666665432 124445555666666666666666666665 2334433333
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00066 Score=41.32 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=30.2
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
++++++++|+++..|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.039 Score=45.00 Aligned_cols=91 Identities=15% Similarity=-0.006 Sum_probs=55.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLGLEYN--QFTISSVICACAGLAALIQGKQVHAVLCKTGFG--SNMFAASSLVDMYA 282 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~y~ 282 (600)
+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++......-. .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888776654 234556667777788888888887777664211 01222222233444
Q ss_pred hhCCHHHHHHHHhcC
Q 007530 283 KCGCVVDAYFVFSGI 297 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~ 297 (600)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555554433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.12 Score=54.25 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34454444444445666666666666652 2356666666666666666666666666554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.059 Score=44.00 Aligned_cols=90 Identities=19% Similarity=0.083 Sum_probs=51.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHH
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYS--EFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR--NVFVGTALLDVYA 181 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~ 181 (600)
..++-..|+.++|+.+|++....| ...+ ...+..+...+...|+.++|..+++......+.+ +..+...+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345556677788888888777776 4433 2345556666677777777777777666553221 1122222333445
Q ss_pred HcCCHHHHHHHHccC
Q 007530 182 KCGLISDASRVFESM 196 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m 196 (600)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.15 Score=46.65 Aligned_cols=167 Identities=11% Similarity=-0.013 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCC--CC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPE--RN--------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~--~d--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 242 (600)
+++|...|.-..-+++-...|+.-.. .. ....+.++....-.|.+.-.+.++++..+...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 56666666655555555555554332 12 234567777778888899999999999887666677888888
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHh
Q 007530 243 ICACAGLAALIQGKQVHAVLCKTGFGSNM-----FAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSR 314 (600)
Q Consensus 243 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 314 (600)
.+.-.+.|+.+.|...++...+..-..|. .+.......|.-.+++..|...|+++.. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999988775433333 3333444456667888888888887775 355566655545555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 315 HARSVEVMILFEKMQQAGLHPNEQTYI 341 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~~p~~~t~~ 341 (600)
.|+..+|++.++.|+.. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78889999999999875 45544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.85 Score=45.32 Aligned_cols=408 Identities=9% Similarity=0.044 Sum_probs=224.2
Q ss_pred ccCCchhHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCChHHHHHHHccCCCC-CcchHHHHHHH--HHcCCCh
Q 007530 45 RERAPVRGKVCHAKIIGMGLNND------TLTSNILINFYSKCGLISGARKVFDEMPQR-CIVSWNTIIGS--YTTNGRE 115 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~ 115 (600)
+.++..++..+|.++.+.- ..+ ....+.++++|-. .+++.....+....+. ....|-.+..+ +-+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 6788999999999987653 222 3345677888864 3455444444443321 13345555544 3467889
Q ss_pred hHHHHHHHHHHHc--CCCCC-----------ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC----CCChhHHHHHHH
Q 007530 116 QEAVALFINMLRE--GKTPY-----------SEFTVSSVLCACAAKRDVFECKQLHVFALKAAM----DRNVFVGTALLD 178 (600)
Q Consensus 116 ~~A~~~~~~m~~~--g~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~ 178 (600)
.+|++.+...... +.-+| |-+.=+..+.++...|.+.+|+.+++++...-+ .=+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999988777665 31111 111223456677789999999999988876643 367888998888
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCC-------------------------------HHHHHHHHHHH
Q 007530 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNEL-------------------------------YEEALILFRRA 227 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~-------------------------------~~~A~~~~~~m 227 (600)
+++++=-++.-... ...=..-|.-||..|.+.=+ ..--++++..-
T Consensus 176 mlsrSYfLEl~e~~----s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 176 MLSRSYFLELKESM----SSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHhHHHHHHHHHhc----ccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 88776333221111 11111123333333322111 11112222222
Q ss_pred HHcCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhhCCHHHHHHHHhcCC--Cc
Q 007530 228 QVLGLEYNQFT-ISSVICACAGLAALIQGKQVHAVLCKTGFGS----NMFAASSLVDMYAKCGCVVDAYFVFSGIE--EK 300 (600)
Q Consensus 228 ~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~y~~~g~~~~A~~~~~~~~--~~ 300 (600)
.+.-+.|+... ...+...+.+ +.+++..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 22334454322 2223333332 4444444444443332111 23456666777777788777776665443 22
Q ss_pred CHh-------HHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHccCC-HHHHHHHHHHHH
Q 007530 301 NVV-------LWNTMISGFS----RHARSVEVMILFEKMQQAGLHPNEQTY-ISVL---SACSHIGM-VEKGKSYFDLMV 364 (600)
Q Consensus 301 ~~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~~~~ 364 (600)
+.. +-.++-+..+ ..-+..+-+.+|+......+ |..-. ..++ .-+-+.|. -++|.++++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 211 1111112222 11223345666766665543 32211 1222 22445555 788888888886
Q ss_pred HhcCCCc-cHHHHHHHHH----HHHhc---C---CHHHHHHHHHcCCCCC----CHHHHHHHHHH--HHHcCChHHHHHH
Q 007530 365 KQHNVLP-NVFHYSCMID----ILGRA---G---LIHEAYDLILNMPFDA----TASMWGSLLAS--CRNYRNLELAEIA 427 (600)
Q Consensus 365 ~~~~~~p-~~~~~~~li~----~~~~~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~ 427 (600)
+ +.| |...-|.+.. .|..+ . ++-+-++++++.++.| +...-|.|..| +..+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3 233 3333333221 22211 1 2223355566666555 34455556555 4568999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 428 AKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 428 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..-+.++.| .+.+|-.++-......++++|..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 68899999999999999999999997764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0091 Score=59.40 Aligned_cols=65 Identities=12% Similarity=-0.073 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG---NHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+...|+.+..++...|++++|...++++++++|+++. +|..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666653 3666666666666666666666666553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.2 Score=51.62 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
+-+.+.-+++|++.|-.|+..... ..|+-.|.+.+|.++|.+ .|.+ |-.+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 444555567888888888876543 345667888888777643 3322 2245556555556666655543
Q ss_pred CCCcCHhHHHHHHHH---H-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 007530 297 IEEKNVVLWNTMISG---F-SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN 372 (600)
Q Consensus 297 ~~~~~~~~~~~li~~---~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 372 (600)
-... .-..++.- . ...+++..|-+++ ...|- ..-.+..+...|-.+-+.++-+++- ..+
T Consensus 684 g~~~---eKKmL~RKRA~WAr~~kePkaAAEmL---iSaGe------~~KAi~i~~d~gW~d~lidI~rkld-----~~e 746 (1081)
T KOG1538|consen 684 GDPK---EKKMLIRKRADWARNIKEPKAAAEML---ISAGE------HVKAIEICGDHGWVDMLIDIARKLD-----KAE 746 (1081)
T ss_pred CChH---HHHHHHHHHHHHhhhcCCcHHHHHHh---hcccc------hhhhhhhhhcccHHHHHHHHHhhcc-----hhh
Confidence 3211 10111100 0 0112222222221 11110 0012223444454555555444432 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH------
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS------ 446 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------ 446 (600)
.++...+..-+.+...+.-|-++|.+|+.. .+++......+++++|..+.++.-+..|+ .|.-.+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhh
Confidence 456666666677778888899999998622 34556666789999999999988776665 333333
Q ss_pred -------HHHHhcCChHHHHHHHHHhh
Q 007530 447 -------NIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 447 -------~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+|.++|+-.||.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34555555555555555553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0046 Score=45.07 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHhcCCC
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYR-NLELAEIAAKQLFGMEP 436 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 436 (600)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666666666777777777766655 2234 4567777777777887 68888888888887776
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=54.38 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHH
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSN 447 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 447 (600)
|...+..+.+.|++++|...|+.+ ...|+ ...+.-+..++...|+++.|...|+++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333333445555555444443 11122 1234445555556666666666666666555543 333444455
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 007530 448 IYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~ 467 (600)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.85 Score=44.40 Aligned_cols=209 Identities=15% Similarity=0.081 Sum_probs=124.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CcCHh--HHHHHHHHHH---hcCC
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-----EKNVV--LWNTMISGFS---RHAR 317 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~ 317 (600)
+.|..+.|.+.-...-..- +.-.-.+.+++...+..|+++.|+++.+.-. ++++. .--.|+.+-+ -.-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444433321 1123344455555556666666666555332 23321 1222222211 1234
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQT-YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (600)
...|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+-+. .|....+... .+.+.|+. +.+-+
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRl 315 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRL 315 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHH
Confidence 5556555555444 5677543 234456789999999999999999743 4555454332 34455643 22222
Q ss_pred HcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhh
Q 007530 397 LNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN-RRWEEVARARKLIRD 467 (600)
Q Consensus 397 ~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 467 (600)
++. ..+| +..+..++..+-...|++..|..-.+.+....|.. +.|..|.++-... |+-.++....-+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 221 2334 46777788888889999999999999999999984 6888999887655 999998888766554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.26 Score=45.17 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC----CCccHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN----VLPNVFHYSC 378 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~ 378 (600)
..-+.++..+.-.|.+.-.+.++.+.++..-+-+......+.+.-.+.||.+.|..+|+...+..+ +.-...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344566666667777888888888888765455666777777777788888888888887654322 1111112222
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 379 MIDILGRAGLIHEAYDLILNMPFD--ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
....|.-.+++.+|...+.+.+.. .|+...|.=.-...-.|+...|.+..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 222334445555666666555321 12333333222223345556666666666655554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.6 Score=42.50 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=87.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVLGLE--YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
-.....+.+.|++++|++.|+++...-.. --....-.+..++-+.|+++.|...++..++.--.....-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 33444555666777777777666654211 1122334455566666666666666666665421111111111111111
Q ss_pred hhCCHHHHHHHHhcCCCc-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 283 KCGCVVDAYFVFSGIEEK-------NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
......... ...+ -...+..+|.-|-......+|...+..+... -- ..-..+..-|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHH
Confidence 111111100 1111 1234555566666666666666655555432 00 111235566788888888
Q ss_pred HHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHH
Q 007530 356 GKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAY 393 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 393 (600)
|..-++.+++.+.-.+. ......|+.+|.+.|..+.|.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888888877644332 244566777777777776443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.26 Score=40.07 Aligned_cols=140 Identities=12% Similarity=0.016 Sum_probs=87.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
.-.|..++..++..+.... .+..-++.++--....-+-+...+.++.+-+-+.+.|-. ....++..|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc----
Confidence 3457778888888887764 255566666665555666677777777775544443311 12233444444442
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 393 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
+......-+......|+-+.-.+++..+.+.+..+|....-++++|.+.|...++.+++++.-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677888899999999999988755566889999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.3 Score=48.25 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCCc---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEEK---N----VVLWNTMISGFSR---HARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
|+-.|....+++...++.+.+... + ...--...-++.+ .|+.++|++++..+....-.++..||..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444577777777777777776642 1 1111122334455 78888999998886666667777788777666
Q ss_pred HHc---------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH----HHHHHH---Hc-C----CCCCCH
Q 007530 347 CSH---------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH----EAYDLI---LN-M----PFDATA 405 (600)
Q Consensus 347 ~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m----~~~p~~ 405 (600)
|-. ....++|+..|.+. +.+.|+..+--.++..+.-.|... +..++- .. . ...+..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 532 22456677766644 344565443333333344444321 222221 00 0 112222
Q ss_pred H--HHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 406 S--MWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 406 ~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
. .+.+++.++.-.|+.+.|.+.+++++.+.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2 3356677777777777777777777776654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0046 Score=40.34 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999888777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.15 Score=48.30 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=50.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCCh
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNL 421 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~ 421 (600)
.+.|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555554432111 0123334555555555555555555544 2111 133444455566677888
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 007530 422 ELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~ 439 (600)
+.|...++++++..|+..
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888754
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.5 Score=42.87 Aligned_cols=301 Identities=13% Similarity=0.047 Sum_probs=175.0
Q ss_pred ChHHHHHHHccCCCCCcchHHHHHHHHHc--CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh--cCCChHHHHHHH
Q 007530 83 LISGARKVFDEMPQRCIVSWNTIIGSYTT--NGREQEAVALFINMLREGKTPYSEFTVSSVLCACA--AKRDVFECKQLH 158 (600)
Q Consensus 83 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~ 158 (600)
....+.+.|..-+ --..|.+|-.++.- .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|
T Consensus 68 sP~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 68 SPYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred CcHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 3444555555432 22356666666554 46777787777665544 6667777777777644 469999999999
Q ss_pred HHHHHhCCCCChhH--HHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Q 007530 159 VFALKAAMDRNVFV--GTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLG-L 232 (600)
Q Consensus 159 ~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 232 (600)
+.|... |.... ...|.-.--+.|+.+.|+..-+.... | =.-.|.+.+...+..|+|+.|+++.+.-+... +
T Consensus 144 eAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 144 EAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 998763 11111 12233333466888887776655443 2 23467888999999999999999998776543 4
Q ss_pred CCCHHH--HHHHHHHHHc---cCchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhhCCHHHHHHHHhcCCC--cCHhH
Q 007530 233 EYNQFT--ISSVICACAG---LAALIQGKQVHAVLCKTGFGSNMFAA-SSLVDMYAKCGCVVDAYFVFSGIEE--KNVVL 304 (600)
Q Consensus 233 ~p~~~t--~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~ 304 (600)
.++..- -..++.+-+. ..+...|+..-.+..+. .||..-. -.-...|.+.|++.++-.+++.+-+ |....
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 455432 2233333221 12344555555444443 3332221 1224567778888888877777653 34433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQA-GLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
|... .+.+.|+ .++.-+++..+. .++|| ......+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 ALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 3322 2233443 344444443321 24554 3455566666777777777776665553 446777777777665
Q ss_pred HHh-cCCHHHHHHHHHcC
Q 007530 383 LGR-AGLIHEAYDLILNM 399 (600)
Q Consensus 383 ~~~-~g~~~~A~~~~~~m 399 (600)
-.- .|+-.++..++-+.
T Consensus 372 eeAetGDqg~vR~wlAqa 389 (531)
T COG3898 372 EEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhhccCchHHHHHHHHHH
Confidence 543 37777777776655
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.02 Score=42.23 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4567788888888888776 3334 466777788888888999999999999999988876543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.089 Score=51.35 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..++..|...+.+.+++..|++...+.++++|+|......-+.+|...|.++.|+..|+.+.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34667788888899999999999999999999999999999999999999999999999998654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.07 Score=51.78 Aligned_cols=254 Identities=13% Similarity=0.034 Sum_probs=149.2
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHH--Hh--CCC-CChhHHHHHHHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEF----TVSSVLCACAAKRDVFECKQLHVFAL--KA--AMD-RNVFVGTALLDV 179 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 179 (600)
+++.|+....+.+|+..++.| .. |.. +|..+.++|.-.+++++|.++|..=+ .. |-. -.......|.+.
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-Te-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-ch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 677888888888888888876 32 333 45556667777778888887765422 11 100 011222334445
Q ss_pred HHHcCCHHHHHHHHccCC-------CC--CHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHH-
Q 007530 180 YAKCGLISDASRVFESMP-------ER--NEVTWSSMVAGFVQNEL--------------------YEEALILFRRAQV- 229 (600)
Q Consensus 180 y~~~g~~~~A~~~f~~m~-------~~--d~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 229 (600)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555566666654422111 10 12344455555554443 2334444443221
Q ss_pred ---cCCC-CCHHHHHHHHHHHHccCchHHHHHHHHHHHH----hCC-CCchhHHHHHHHHHHhhCCHHHHHHHHhcCC--
Q 007530 230 ---LGLE-YNQFTISSVICACAGLAALIQGKQVHAVLCK----TGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIE-- 298 (600)
Q Consensus 230 ---~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-- 298 (600)
.|-. .-...|..+.+.|.-+|+++.+...|+.-+. .|- ......+..|.+.|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 0112344455555567789999888876544 221 1234466778888888899999988876432
Q ss_pred -----CcC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 299 -----EKN--VVLWNTMISGFSRHARSVEVMILFEKMQQA----G-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 299 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
++. ..+..+|...|.-..++++|+.++.+-..- + ..-....+.+|..++...|..++|..+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 233 345566777888788889999888764321 1 12245677888899999999999887776554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.019 Score=49.28 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455677778889999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.26 Score=44.92 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=81.2
Q ss_pred HHHHHcCCHHHHHHHHccCCC--C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 007530 178 DVYAKCGLISDASRVFESMPE--R----NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGL-- 249 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~--~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-- 249 (600)
..+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...|++....-..-....+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344555666666666665543 1 12234455666666777777777777666542111112222222222111
Q ss_pred -----------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCCh
Q 007530 250 -----------AALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 250 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 318 (600)
+....|...+.. ++.-|=...-..+|......+.+.=...--.+..-|.+.|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred CccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 112233333333 344444444445554444433322111222245668889999
Q ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPN----EQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~ 357 (600)
..|..-++.+.+. =|+ ......++.++.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999998886 233 235567778888888777543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.11 Score=42.83 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 333 LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 333 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..|+..+..+++.+|+..+++..|.++.+...+.++++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.081 Score=43.65 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH--------------HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC---
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMV--------------KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--- 399 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 399 (600)
..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 23345677777777888887778888777776654
Q ss_pred -CCCCCHHHHHHHHHHHHHc
Q 007530 400 -PFDATASMWGSLLASCRNY 418 (600)
Q Consensus 400 -~~~p~~~~~~~ll~~~~~~ 418 (600)
+++-+..+|..|+.-+...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 5555577777777655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=2 Score=42.24 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=45.0
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcC
Q 007530 312 FSRHARSVEVMILFEKMQQA---GLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAG 387 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 387 (600)
..+.|.+.+|.+.+.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.|. +..|-.-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766552 234445555555556666777777766665554 22222 111111122333445
Q ss_pred CHHHHHHHHHcC
Q 007530 388 LIHEAYDLILNM 399 (600)
Q Consensus 388 ~~~~A~~~~~~m 399 (600)
.|++|.+-+++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.14 Score=48.05 Aligned_cols=99 Identities=15% Similarity=-0.014 Sum_probs=66.2
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC---CHHHHHHHHccCCC---CCHHHH
Q 007530 131 TPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG---LISDASRVFESMPE---RNEVTW 204 (600)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~---~d~~~~ 204 (600)
-|-|...|-.|..+|...|+.+.|..-|....+... ++...+..+..++.... ...++..+|+++.. .|+.+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 356777777777777777777777777777777632 24555555555443332 24567777777664 255666
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 205 SSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
..+...+.+.|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 67777788888888888888888775
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.13 Score=47.55 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=82.3
Q ss_pred HHHHHHHhcCC--CcCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------
Q 007530 288 VDAYFVFSGIE--EKNVVLWNTMISGFSRH-----ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG--------- 351 (600)
Q Consensus 288 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 351 (600)
-..++.|.... ++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..||+.+=+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33456677766 67888999999888754 566667778899999999999999999998875532
Q ss_pred -------CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 352 -------MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 352 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
.-+=++.++++| +.+|+.||.++-..|+.++++.+..-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 224478999999 68999999999999999999988643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.021 Score=42.79 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhc----CCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFG----MEPD---NAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+++.+...+...|++++|+..++++++ ..++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555556666666666655554 2221 23456677777777777777777776653
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.031 Score=41.81 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
.++..+...+...|++++|++.++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555556666666666666655543
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.2 Score=43.28 Aligned_cols=52 Identities=8% Similarity=0.064 Sum_probs=26.0
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 212 VQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
-+..+.+.-+++-++..+ +.||-.+.-.++ +--......++++++.+.++.|
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH
Confidence 344455555555454443 345443322222 2223445677777777777654
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.92 Score=45.84 Aligned_cols=187 Identities=12% Similarity=0.072 Sum_probs=99.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAY 393 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 393 (600)
+..++..-+++-++..+ +.||-.+-..++ +--....+.++++++++..+... ..+..-- .....|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s~-~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----ASLGKSQ-FLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----Hhhchhh-hhhcccc---hh
Confidence 34455555566666555 456654433333 23344567788888877654210 0000000 0000111 11
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 394 DLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 394 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
+.+..-...|-..+=..|...+.+.|+.++|.+.++++++..|. +...+..|+.++...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222333355667777788888888888888876553 4557778888888888888888888776554444
Q ss_pred cCCceEEE--EEcCc-----------ccCcchHHHHHHHHHHHHHHHHCCCccC
Q 007530 472 KEKSKSWV--EIKGK-----------RNHPRIAEIYSKLEKLVEEMKKLGYKPE 512 (600)
Q Consensus 472 ~~~~~~~~--~i~~~-----------~~~~~~~~~~~~l~~l~~~m~~~g~~pd 512 (600)
+...++|. +++.. .+.|........++.+-+.++....+|+
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 44444442 12211 1112222233445567777777888876
|
The molecular function of this protein is uncertain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.35 Score=47.37 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+..|.-+|.+.+.+.+|+...++. . .++|....-.=..++...|+++.|+..|+++++++|+|-.+..-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5566777888899999998887765 2 2456777777788999999999999999999999999988888887777666
Q ss_pred CChHHH-HHHHHHhhh
Q 007530 453 RRWEEV-ARARKLIRD 467 (600)
Q Consensus 453 g~~~~a-~~~~~~m~~ 467 (600)
..+.+. .++|..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 655554 667777754
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=46.75 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD---NAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
|+..-| |..++...|+++.|..+|..+.+-.|+ -|..+.-|+....+.|+.++|..+++...++
T Consensus 178 ~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 178 PNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred chhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444444 556666666666666666666664443 3445666666667777777777777666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.96 E-value=5.4 Score=41.42 Aligned_cols=380 Identities=12% Similarity=0.030 Sum_probs=225.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 007530 67 DTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIV-SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143 (600)
Q Consensus 67 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 143 (600)
+...++.||.---.....+.++.+++.+.. |... -|-....-=.+-|..+.+.++|++-+.. +|-....|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 444566666544444555667777776653 4443 3555555556778899999999998886 7777777777666
Q ss_pred HHh-cCCChHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHH---hC---
Q 007530 144 ACA-AKRDVFECKQLHVFALKA-AMD-RNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV---QN--- 214 (600)
Q Consensus 144 ~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~---~~--- 214 (600)
.+. ..|+.+..+..|+.++.. |.. .....|-..|..-..++++.....+++++.+-....++..-.-|. ++
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 554 467888888888888776 322 134467777777788889999999998887643333333332222 22
Q ss_pred ---CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH------------------HH-------HccCchHHHHHHHHHH
Q 007530 215 ---ELYEEALILFRRAQVL----GLEYNQFTISSVIC------------------AC-------AGLAALIQGKQVHAVL 262 (600)
Q Consensus 215 ---g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~------------------a~-------~~~g~~~~a~~~~~~~ 262 (600)
...+++.++-...... -..+.......-+. .+ -..-.....+..++.-
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 1233333332222110 00011111111111 00 0111111122222222
Q ss_pred HHhC---C----CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007530 263 CKTG---F----GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK---NVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332 (600)
Q Consensus 263 ~~~~---~----~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 332 (600)
++.. + .++..+|..-++.-.+.|+.+.+.-+|++..-| -...|--.+.-.-..|+.+-|..++....+--
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 2211 1 224667888888888888988888888887654 23456666655556688887777776655543
Q ss_pred CC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHcC-CCCCCH
Q 007530 333 LH--PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAY---DLILNM-PFDATA 405 (600)
Q Consensus 333 ~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~ 405 (600)
++ |....+.+. -+-..|+.+.|..+++.+.++. |+. ..-..-+....+.|..+.+. +++... +.+-+.
T Consensus 362 ~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 362 VKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred CCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 32 222223222 3456789999999999997653 543 23333455667888888887 555443 222233
Q ss_pred HHHHHHHH-----HHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 406 SMWGSLLA-----SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 406 ~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
.+...+.- -+...++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 22222222 2344688999999999999999999888888888776655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.9 Score=38.10 Aligned_cols=196 Identities=15% Similarity=0.053 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC-----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE-----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
..........+...+.+..+...+.... ......+......+...+...++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444445555555555555555554432 22334455555555566666667777766665432221 11111222
Q ss_pred -HHHccCCHHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC--HHHHHHHHHHHHHcC
Q 007530 346 -ACSHIGMVEKGKSYFDLMVKQHNV--LPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT--ASMWGSLLASCRNYR 419 (600)
Q Consensus 346 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~ 419 (600)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56667777777777776642 111 112233333334455667777777776665 22232 566666777777777
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+.+.+...+....+..|.....+..+...+...+.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888888877777764455556666666666677777776666543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.90 E-value=7.1 Score=42.51 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=66.9
Q ss_pred cCChHHHHHHHccCCC--CCcchHHHHHHHH--HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 007530 81 CGLISGARKVFDEMPQ--RCIVSWNTIIGSY--TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQ 156 (600)
Q Consensus 81 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (600)
.+++..|.+..+...+ || ..|..++.++ .+.|+.++|..+++.....+ +.|..|...+-..|...+..+++..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 4556666665555443 22 2334444443 45666677776666655443 2256666666666666677777776
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHcCCHH----HHHHHHccCCCCCHHHHHH
Q 007530 157 LHVFALKAAMDRNVFVGTALLDVYAKCGLIS----DASRVFESMPERNEVTWSS 206 (600)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~m~~~d~~~~~~ 206 (600)
+++++.+.. |+......+..+|.+.+++. .|.++++..+++--.-|+.
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 666666542 33555555556666665543 3555666555544444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=6.7 Score=42.01 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=89.1
Q ss_pred HHHhccCCchhHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhH
Q 007530 41 QSCARERAPVRGKVCHAKIIGMGLNN---DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQE 117 (600)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 117 (600)
..+...+.+++|..+-.... |..| -..++..+|..|.-.|++++|-...-.|...+..-|--.+..++..++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 33444455555554433322 3333 345677788888888888888888888888888888888888888777665
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 118 A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
...+ +.... -..+...|..++..+.. .....+++...+. +++.+.-...+++ ...-+++-.
T Consensus 442 Ia~~---lPt~~-~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa---------~~~q~~q~S 502 (846)
T KOG2066|consen 442 IAPY---LPTGP-PRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISA---------TEPQIKQNS 502 (846)
T ss_pred hhcc---CCCCC-cccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhh---------cchHHHhhc
Confidence 4433 22111 12345567777766655 1222223222221 2222222222111 111111111
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 198 ERNEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 198 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
++ ...-..|+..|...+++..|+.++-..+
T Consensus 503 e~-~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 503 ES-TALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred cc-hhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11 1222237777778888888887776654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.4 Score=45.28 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=92.5
Q ss_pred HHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH
Q 007530 211 FVQNELYEEALILFR-RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 289 (600)
..-.++++++.++.+ .-.-..++ ..-...++.-+.+.|..+.|.++-. |+ ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHH
Confidence 344566666655554 11111122 3335566666666777777766632 22 123456778889998
Q ss_pred HHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 007530 290 AYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNV 369 (600)
Q Consensus 290 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 369 (600)
|.++-++.. +...|..|.....++|+.+-|.+.|.+... |..|+-.|.-.|+.+.-.++-+... ..|
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~-~~~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE-ERG- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH-HTT-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH-Hcc-
Confidence 888877765 566899999999999999999888887532 4455556677788777777766653 223
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
-++....++.-.|+.++..+++.+-+
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 24444555556677777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.4 Score=43.57 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=92.6
Q ss_pred HHHcCCChhHHHHHHH--HHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 108 SYTTNGREQEAVALFI--NMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~--~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...-.|+++++.++.+ ++... +| ..-...++..+-+.|..+.|.++-. |+. .-.+...++|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~--i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN--IP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhccc--CC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 3344677777666654 22211 33 3346677777777787777776632 332 23455678899
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 186 ISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 186 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
++.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ +..++-.|...|+.+.-.++.......
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988877665 567899999999999999999988887653 455666677778877777777776666
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHh
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFS 295 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 295 (600)
|- +|.....+.-.|++++..+++.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 52 3334444455566665555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.73 E-value=6.3 Score=41.09 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-----hHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHH-H
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEF-----TVSSVLCACAA----KRDVFECKQLHVFALKAAMDRNVFVG-T 174 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~-----t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~-~ 174 (600)
+++...=.|+-+.+++++.+-.+.+.+.-... +|..++..+.. ..+.+.+.+++..+.+.- |+...| -
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 34444445666666666665544332221111 22222222222 345556666666666652 222222 2
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 007530 175 ALLDVYAKCGLISDASRVFESMPER-------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC- 246 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~-------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~- 246 (600)
.-...+...|++++|.+.|+..... ....+--+.-.+.-..+|++|.+.|.++.+.. ..+..+|.-+..+|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 2334555666677777766654321 12223333444555666777777666666542 23344444333333
Q ss_pred HccCch-------HHHHHHHHHHH
Q 007530 247 AGLAAL-------IQGKQVHAVLC 263 (600)
Q Consensus 247 ~~~g~~-------~~a~~~~~~~~ 263 (600)
...|+. ++|..++..+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 334444 55555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.18 Score=43.09 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=51.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCChhHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALK-----AAMDRNVFVG 173 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 173 (600)
....++..+...|++++|+.+.+.+... -|.|...+..++.++...|+...|.++|+.+.+ .|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556677778889999999999998887 477888999999999999999999988887754 4777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=7.2 Score=41.17 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=111.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC-CCcc------------hHHHHHHHHHcCCChhHHHHHHHHHHHcCCC
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ-RCIV------------SWNTIIGSYTTNGREQEAVALFINMLREGKT 131 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 131 (600)
.|.+..|..|...-.+.-.++.|...|-+... +.+. .-.+=|.+| -|++++|.++|-+|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 57777887777766666677777777765542 1111 111222332 266677766666554432
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCC----hhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHH
Q 007530 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM-DRN----VFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSS 206 (600)
Q Consensus 132 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~ 206 (600)
..+....+.||+-...+++ +.|- ..| ...++.+...++....+++|.+.|..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~----r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLI----RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHH----HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----Hh
Confidence 1233334444444443332 1211 111 124555555555555555555555443211 11
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
.+.++.+..++++-..+-+ .++-|...+-.+...+...|.-++|.+.|-.- +.+ .+.++.+...++
T Consensus 828 ~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHH
Confidence 2233333333333222222 13334445556666677777777666654322 211 124455666667
Q ss_pred HHHHHHHHhcCCCcCHhHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEEKNVVLWNT--------------MISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
+.+|.++-++..-|.+.+.-+ -|.-+.+.|+.-+|-+++.+|.+
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 777777766655444333211 12334445555555566655543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.55 E-value=4.1 Score=40.44 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCC---C----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 175 ALLDVYAKCGLISDASRVFESMPER---N----EVTWSSMVAGFVQ---NELYEEALILFRRAQVLGLEYNQFTISSVIC 244 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~---d----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 244 (600)
.++-.|-...+++..+++++.+... + ...-.....++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455688888999999998888763 1 1222233445566 8899999999998766666778888877765
Q ss_pred HH
Q 007530 245 AC 246 (600)
Q Consensus 245 a~ 246 (600)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.43 E-value=6 Score=39.55 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 007530 54 VCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCI---VSWNTIIGSYTTNGREQEAVALFINMLREGK 130 (600)
Q Consensus 54 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 130 (600)
++-+++... +.|..+|-.||.-|...+..++.++++++|..|-. .+|..-|++-....+++....+|.+-+...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 455555432 66889999999999999999999999999998754 579999988888889999999998888764
Q ss_pred CCCChhhHHHHHHHHhcCC
Q 007530 131 TPYSEFTVSSVLCACAAKR 149 (600)
Q Consensus 131 ~~p~~~t~~~ll~~~~~~~ 149 (600)
+ +...|..-+.--.+..
T Consensus 107 l--~ldLW~lYl~YIRr~n 123 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVN 123 (660)
T ss_pred c--cHhHHHHHHHHHHhhC
Confidence 4 3445555555444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.5 Score=35.64 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHH
Q 007530 140 SVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEE 219 (600)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 219 (600)
.++..+...+.......+++.+++.+. .+...+|.++..|++.+. ++....++. ..+.......+..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 444444444555555555555555542 355566666666665432 233333331 1122223334444445555555
Q ss_pred HHHHHHHH
Q 007530 220 ALILFRRA 227 (600)
Q Consensus 220 A~~~~~~m 227 (600)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.4 Score=35.81 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCh
Q 007530 36 LQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGRE 115 (600)
Q Consensus 36 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 115 (600)
...++..+...+.+......++.+++.+ ..++..+|.++..|++.+ ..+....++. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 4456777777777888888888888776 467788899999998763 3445555552 23445555577777777777
Q ss_pred hHHHHHHHHH
Q 007530 116 QEAVALFINM 125 (600)
Q Consensus 116 ~~A~~~~~~m 125 (600)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 7777776654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.30 E-value=1 Score=37.73 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=39.7
Q ss_pred HhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 384 GRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.+.|++++|.+.|+.+ |..| ....-..|+.++...++++.|...+++.+++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3566677776666665 3222 2344556778888888888888888888888887654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.25 E-value=4.3 Score=37.15 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCC-------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHhc----CCCCCcchH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNMP-------FDATA-SMWGSLLASCRNYRNLELAEIAAKQLFG----MEPDNAGNH 442 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~ 442 (600)
.|......|.+..++++|-..|.+-. .-|+. ..+.+.+-.+.-..|+..|++.++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444455666666666655554431 11221 2334444445555677777777777554 445666666
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 007530 443 LLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 443 ~~l~~~~~~~g~~~~a~~~~ 462 (600)
..|+.+| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6777666 456777766654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.23 E-value=9.2 Score=40.86 Aligned_cols=325 Identities=10% Similarity=0.024 Sum_probs=178.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHH
Q 007530 103 NTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA-AM-DRNVFVGTALLDVY 180 (600)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y 180 (600)
..+|+-+...+.+..|+++-+.|...- .. +...|.....-..+..+.. -..+++.+.+. +. -..-..|..+..--
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~-~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPE-SQ-GDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcc-cc-ccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 456677777777888887766664332 12 2445555555554442211 11222222221 11 12344566677777
Q ss_pred HHcCCHHHHHHHHccCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 181 AKCGLISDASRVFESMPER--------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
-.+|+.+-|.++.+.=+.. +..-+..-+.-..+.|+.+-...++..|.+. .+...|... ..+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhc
Confidence 7788888888887654331 2223445555566677777766666666542 111111111 1223
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHh--cC-----CCcCHhHHHHHHHHHHhcCC---hHHH-
Q 007530 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFS--GI-----EEKNVVLWNTMISGFSRHAR---SVEV- 321 (600)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~g~---~~~A- 321 (600)
..|..+|.+..+..-.. .|-+.|-...+.. +...|. .. .+.-..........+++... ..+|
T Consensus 589 p~a~~lY~~~~r~~~~~------~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRA------TLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhhHHHHHHHHhhchh------hhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 34445555544421110 1222222222222 221111 10 01111112222333433322 1111
Q ss_pred ------HHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 322 ------MILFEKMQQ-AGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 322 ------~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
+.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 222222222 1333344455556667778899999998876652 5888888888999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 395 LILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 395 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
+-+.+. .+.-|.-+..+|.+.|+.++|.+.+.+.-.+ .-...+|.+.|++.+|.+.-
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 988874 2556777889999999999999887664221 25778899999999998764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.49 Score=38.41 Aligned_cols=88 Identities=14% Similarity=0.045 Sum_probs=65.0
Q ss_pred HHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCCh
Q 007530 382 ILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN----AGNHLLLSNIYAANRRW 455 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 455 (600)
++...|++++|++.|.+. .+- .....||.-..+++-.|+.++|..-+++++++.-+. ...|+.-+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888877665 222 356788888888888888888888888888854321 22566677788888999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
+.|+.-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99988888877766
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.093 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777888888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=5.5 Score=40.34 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=82.8
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 007530 303 VLW--NTMISGFSRH-----ARSVEVMILFEKMQQ-AGLHPNEQ-TYISVLSACSH---------IGMVEKGKSYFDLMV 364 (600)
Q Consensus 303 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 364 (600)
..| ..++.|.... ...+.|+.+|.+... ....|+.. .|..+..++.. ..+..+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 124577888888772 22566532 33333222211 223445555555554
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
+-. .-|......+..++.-.|+++.|..+|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|.....-
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 221 224555555555556666677777777765 34454 45565555566667777777777777777777643322
Q ss_pred H--HHHHHHHhcCChHHHHHH
Q 007530 443 L--LLSNIYAANRRWEEVARA 461 (600)
Q Consensus 443 ~--~l~~~~~~~g~~~~a~~~ 461 (600)
. ..+++|...+ .++|.++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHH
Confidence 2 2333444433 4444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.64 E-value=11 Score=42.44 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 007530 184 GLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 184 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
+++++|..-+..+. ...|.-.++---++|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 44555555554443 223333333334556666665554 5677666666655532 111
Q ss_pred HhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HH
Q 007530 264 KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT--YI 341 (600)
Q Consensus 264 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~ 341 (600)
+. ..|+-..-+|.++|+.++|.+.+ ...|++.+|+.+-.+|.. .-|... -.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 11 11222334566777777765443 345666677666666532 112221 13
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.|..-+...++.-+|-++..+... .|. -.+..|++...+++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 455555666666666666554432 232 1234555666666666665544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.5 Score=47.41 Aligned_cols=62 Identities=6% Similarity=-0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDATA----SMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555555542 334442 23556666666666666666666666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.8 Score=39.53 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=83.8
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH---HHHHHHHcCChH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGS---LLASCRNYRNLE 422 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~~~~~ 422 (600)
.....|+..++...|+....... -+...--.|+.+|...|+.+.|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44567888888888888865432 2345666788889999999999999999875544444443 222333333333
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 423 LAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 423 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+...+ +.-...+|+|...-..|+..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33222 23344689998999999999999999999999877766554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.59 Score=40.08 Aligned_cols=80 Identities=11% Similarity=-0.081 Sum_probs=31.4
Q ss_pred cCChHHHHHHHccCC--C-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 007530 81 CGLISGARKVFDEMP--Q-RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQL 157 (600)
Q Consensus 81 ~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (600)
.|++++|..+|.-+. . -|..-|..|..++-..+++++|+..|......+ +-|+..+-....++...|+.+.|+..
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 344444444444321 1 123333444444444444444444444433322 12333333333344444444444444
Q ss_pred HHHHH
Q 007530 158 HVFAL 162 (600)
Q Consensus 158 ~~~~~ 162 (600)
|..++
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.16 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777777777777777777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.1 Score=34.89 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=55.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHP---NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
...+.|++++|.+.|+.+... .+. ....-..++.++.+.+++++|...++..++.+.-.|++ .|.....+++.-.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 344566666666666666554 111 22344456666666666666666666666554444442 2333333333222
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 388 LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 388 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
..+..+.-+- ....| .+....|...|+++++.-|++.
T Consensus 97 ~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 2221111111 11111 1234567777777777777753
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.92 Score=42.14 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHccCC--CCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 007530 189 ASRVFESMP--ERNEVTWSSMVAGFVQN-----ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA----------- 250 (600)
Q Consensus 189 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 250 (600)
.++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 57888888888777653 566777777888999999999999999988764432
Q ss_pred -----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 251 -----ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 251 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
+-+-+..++++|...|+-||-.+-..|++.+++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777888888888888777777777776654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=2.3 Score=42.94 Aligned_cols=117 Identities=10% Similarity=0.000 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhc---------CCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcC
Q 007530 352 MVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRA---------GLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYR 419 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~ 419 (600)
..+.|..+|.+.+....+.|+ ...|..+...+... ....+|.++.++. ... .|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788889988755566775 44555544443321 2344556666554 333 46777777777777888
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+++.|...|+++..++|+.+..+...+....-+|+.++|.+..++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998875443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=6.8 Score=35.54 Aligned_cols=192 Identities=14% Similarity=0.068 Sum_probs=113.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC-HhHHHHHHH-HHHhcC
Q 007530 242 VICACAGLAALIQGKQVHAVLCKT-GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KN-VVLWNTMIS-GFSRHA 316 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g 316 (600)
....+...+.+..+...+...... ........+..+...+...+....+.+.+..... ++ ...+..... .+...|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC
Confidence 333333444444444433333331 2223333444444444555555555555554432 11 122222222 677788
Q ss_pred ChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 007530 317 RSVEVMILFEKMQQAGLHP----NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 391 (600)
+.+.|...+.+... ..| ....+......+...++.+.+...+....+.. .. ....+..+...+...+.++.
T Consensus 145 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 145 DYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred CHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccHHH
Confidence 88888888888755 233 23344444444667788888888888886432 22 35677777888888888888
Q ss_pred HHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 392 AYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 392 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888776 33444 455555555555667799999999999988886
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.2 Score=41.29 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=28.6
Q ss_pred HHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCchHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQVL--GLEYNQFTISSVICACAGLAALIQGKQV 258 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 258 (600)
+.+..+.++|+..+.+-... ....--.+|..+..+.+..|.++++...
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 44567788888877766542 1111234566666677777766665544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.98 E-value=9 Score=36.83 Aligned_cols=17 Identities=12% Similarity=-0.011 Sum_probs=9.5
Q ss_pred cCCChHHHHHHHHHHHH
Q 007530 147 AKRDVFECKQLHVFALK 163 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~ 163 (600)
+.|+++.|...+.++..
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45566666665555544
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.95 E-value=11 Score=37.63 Aligned_cols=150 Identities=7% Similarity=-0.061 Sum_probs=77.9
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-cCCCccHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP---NEQTYISVLSACSHIGMVEKGKSYFDLMVKQ-HNVLPNVFH 375 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 375 (600)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 455678888888888888888888888887643111 2223333344555678888888888777641 111101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 376 YSCMIDILGRAGLIHEAYDL-ILNMPFDATASMWGSLLASCRNY------RNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...+.++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000012233333333333 788889999999999999877777776665
Q ss_pred HHh
Q 007530 449 YAA 451 (600)
Q Consensus 449 ~~~ 451 (600)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.1 Score=41.82 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAG----LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSC 378 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 378 (600)
.|+.-+..| +.|++.+|...|...++.. ..| ..+-.|..++...|+++.|..+|..+.+.++-.|. ++.+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555443 4566777777777777652 122 23445777777778888887777777766655543 245555
Q ss_pred HHHHHHhcCCHHHHHHHHHcC
Q 007530 379 MIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m 399 (600)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 556666666666666665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.91 E-value=7.4 Score=40.57 Aligned_cols=160 Identities=12% Similarity=-0.032 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAG-LHPNE-----QTYISVLSACSH----IGMVEKGKSYFDLMVKQHNVLPNVF 374 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 374 (600)
...++....-.|+-+.+++++.+-.+.+ +.-.. .+|..++..+.. ..+.+.+.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3345555566788888888887765532 22111 233333433332 457888999999997554 6655
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHcCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH-HHH
Q 007530 375 HYSCM-IDILGRAGLIHEAYDLILNMPF------DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL-LLS 446 (600)
Q Consensus 375 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 446 (600)
.|... ...+...|++++|.+.|++.-. +-....+--+...+....++++|...+.++.+...-....|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 3456678999999999996521 112344555666778889999999999999986655444554 455
Q ss_pred HHHHhcCCh-------HHHHHHHHHhhh
Q 007530 447 NIYAANRRW-------EEVARARKLIRD 467 (600)
Q Consensus 447 ~~~~~~g~~-------~~a~~~~~~m~~ 467 (600)
-+|...|+. ++|.+.+.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 566788888 888888877754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.69 E-value=12 Score=37.54 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTY-ISVL 344 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll 344 (600)
..+|..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 44555666666666666666666665543 45666666666554 45666777777654443 3443333 3445
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.-+...++-+.|..+|+..+.+ +..+ ...|..+|+-=..-|++..+..+=+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 5556677778888888755432 2222 456777777777777777776555554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.6 Score=35.57 Aligned_cols=53 Identities=21% Similarity=0.047 Sum_probs=28.2
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (600)
+..|+.+.|++.|.+.+.. .|.+...|+.-..++.-.|+.++|..-+++.++.
T Consensus 54 aE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4455555555555555544 3445555555555555555555555555555444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.49 E-value=11 Score=36.52 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--c----CchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhhCCH
Q 007530 217 YEEALILFRRAQVLGLEYNQFTISSVICACAG--L----AALIQGKQVHAVLCKTGF---GSNMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 217 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~y~~~g~~ 287 (600)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|.+... .++..++.+|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888888777764443332 1 134556677777766532 2223333333222 11111
Q ss_pred HHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSHIGM--VEKGKSYFDLM 363 (600)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~ 363 (600)
+. -.+.+..+|+.+.+.|+..+. ...+.++..+..... +..+.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 10 134666777777777766542 333444443333222 34677778877
Q ss_pred HHhcCCCccHHHHHHHH
Q 007530 364 VKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 364 ~~~~~~~p~~~~~~~li 380 (600)
. +.|+++...+|..+.
T Consensus 209 ~-~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 K-KNGVKIKYMHYPTLG 224 (297)
T ss_pred H-HcCCccccccccHHH
Confidence 4 568888777776553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.9 Score=41.14 Aligned_cols=159 Identities=9% Similarity=-0.056 Sum_probs=110.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHH----HHHHHhcCCH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCM----IDILGRAGLI 389 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 389 (600)
-+|+..+|-..++++.+. .+-|...+...=.+|...|+.+.-...++++.. ...||...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 566777788788899999999999999988863 335555444433 3344578999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 390 HEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD----NAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
++|++.-++. .+.| |.=.-.++.......++..++.+...+-...-.. -...|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4443 3334455666677788999998887776543221 12244455556677799999999998
Q ss_pred HhhhCCCccCCc
Q 007530 464 LIRDSEVKKEKS 475 (600)
Q Consensus 464 ~m~~~~~~~~~~ 475 (600)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.97 Score=39.78 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=64.6
Q ss_pred HHhcCCHHHHHHHHHcC----CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 383 LGRAGLIHEAYDLILNM----PFDA---TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
+.+.|++++|..-|... |-.+ -.+.|..-..+..+.+..+.|..-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666555443 1111 1344555556677889999999999999999998877877888899999999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
++|+.-++.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=21 Score=38.93 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 315 HARSVEVMILFEKMQQA-GLHPNEQ--TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
..+.+.|..++...... ++.+... ....+.......+...++...++.... -..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888776443 2333322 222333222232224566666655421 11233344444555557888888
Q ss_pred HHHHHHcCCCC-CCHHHHH-HHHHHHHHcCChHHHHHHHHHHhc
Q 007530 392 AYDLILNMPFD-ATASMWG-SLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 392 A~~~~~~m~~~-p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+...+..|+.. .+..-|. =+..+....|+.+.|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887421 1222222 244555567888888888888743
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.06 E-value=10 Score=35.23 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=98.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 007530 309 ISGFSRHARSVEVMILFEKMQQAGL--HPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 386 (600)
+..-.+.|++++|...|+.+..... +-...+...++.++-+.+++++|+...++.++.++-.|+.. |...+.++..-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3344567788888888888776521 11345666677777778888888888888777777777653 33333333321
Q ss_pred -------CCHHHHHHH-------HHcCC---CCCCHHHH------------HHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 387 -------GLIHEAYDL-------ILNMP---FDATASMW------------GSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 387 -------g~~~~A~~~-------~~~m~---~~p~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+...+.+- +++.| ..||+..- .++..-|.+.|.+.-|..-++++++--|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 122222222 22333 22343221 12445678889999999999999987665
Q ss_pred Ccc---hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 438 NAG---NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 438 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+. .+..+..+|.+.|..++|.+.-+-+.
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 443 45567888999999999998876664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.62 E-value=6.7 Score=32.24 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
-.+.-+....++|+-++-.+++.++... -++++.....+..||.+.|+..++..++.++.+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455667778888888888888887653 3677778888888999999999999998888888753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.26 E-value=14 Score=35.14 Aligned_cols=146 Identities=15% Similarity=0.072 Sum_probs=92.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 007530 310 SGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389 (600)
Q Consensus 310 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 389 (600)
......|++.+|..+|....... .-+...-..+..++...|+++.|..++..+-.+.. ........+-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888877752 22344555677788888888888888887632210 11111122345566666655
Q ss_pred HHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHH
Q 007530 390 HEAYDLILNMPFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGME--PDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 390 ~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
.+..++-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -.+...-..|..++...|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555553345 56666677777888888888888877777643 3455666677777777664443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.08 E-value=6.8 Score=37.63 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=112.7
Q ss_pred hhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCCHHH
Q 007530 283 KCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI----SVLSACSHIGMVEK 355 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~ 355 (600)
-.|+..+|-..++++.+ .|..+|+--=.++...|+.+.-...+++.... ..||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45777777777777664 48888998889999999999999999998765 345543332 22334557899999
Q ss_pred HHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHHcCChHHHHHH
Q 007530 356 GKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT-------ASMWGSLLASCRNYRNLELAEIA 427 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~ 427 (600)
|++.-++..+ +.| |.-.-.++...+.-.|+..++.++..+-...-+ -.-|. ..-.+...+.++.|+.+
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhHHHHH
Confidence 9999887763 333 444555677778889999999999987631111 01122 12223445889999999
Q ss_pred HHHHh--cCCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 007530 428 AKQLF--GMEPDNAGNHL---LLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 428 ~~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 462 (600)
|++-+ +++.+|..... -+-.+-.....|.+-.++-
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 97644 36666653332 2333334444444444333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.78 Score=29.63 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHc
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLRE 128 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 128 (600)
+|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566667777777777777777777775
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.8 Score=41.03 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQV-----LGLEYNQFTISS 241 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 241 (600)
..++..++..+..+|+.+.+.+.++++.+ -|...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45678899999999999999999998875 3778999999999999999999999998865 577777666544
Q ss_pred HHHH
Q 007530 242 VICA 245 (600)
Q Consensus 242 ll~a 245 (600)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.29 E-value=22 Score=35.88 Aligned_cols=352 Identities=13% Similarity=0.039 Sum_probs=173.7
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCC
Q 007530 38 ATLQSCARERAPVRGKVCHAKIIGMGLN----NDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNG 113 (600)
Q Consensus 38 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 113 (600)
....++...|.+.+|+.++.+++..=++ -+..+||.++-+|++.=-+ ++-+.+...=..-|.-+|-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHH
Confidence 3456667889999999998888765433 6888899888888764222 1222222222234555555554321
Q ss_pred ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHHcCCHHHHH
Q 007530 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR--DVFECKQLHVFALKAAMDRNVF-VGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 114 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~ 190 (600)
+.-++.. |+ . +.|....+..++.-..-.. .+.--.+++..-...-+.|+-. +...|+.-+.+ +.+++.
T Consensus 209 ~~~d~~~-Y~-----k-~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 209 HAFDQRP-YE-----K-FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHhhch-HH-----h-hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 1111100 00 0 2333333333333322211 1222223333333333344322 33344444444 333433
Q ss_pred HHHccCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHH-ccC---c
Q 007530 191 RVFESMP--------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV-------ICACA-GLA---A 251 (600)
Q Consensus 191 ~~f~~m~--------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------l~a~~-~~g---~ 251 (600)
.+-+.+. +.=+.++..++...++.++..+|-+.+.-+..- .|+...-.-+ -+..+ ... +
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tk 357 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTK 357 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHH
Confidence 3322221 223557888888888888888888887766542 3432211111 11111 111 1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhhCC-HHHHHHHHhcCCC---cCHhHHHHHHH----HHHhc---CC
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLV---DMYAKCGC-VVDAYFVFSGIEE---KNVVLWNTMIS----GFSRH---AR 317 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~~---g~ 317 (600)
+..-..++..+...++..- ....-|+ .-+-+.|. -++|..+++.+.+ -|...-|.+.. .|.+. ..
T Consensus 358 lr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 358 LRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1112223333333322211 1111122 22334444 6667777766543 34444443321 23221 22
Q ss_pred hHHHHHHHHHHHHcCCCCCHH----HHHHHHHH--HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 318 SVEVMILFEKMQQAGLHPNEQ----TYISVLSA--CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
..+-+.+-+-..+.|+.|-.+ .-+.|..| +...|++.++.-+-..+. .+.|++.+|..+.-.+....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 334444444455667766432 22333322 345688888877666664 457888888888888888888888
Q ss_pred HHHHHHcCCCCCCHHHHHH
Q 007530 392 AYDLILNMPFDATASMWGS 410 (600)
Q Consensus 392 A~~~~~~m~~~p~~~~~~~ 410 (600)
|.+++.++| |+..+|++
T Consensus 514 A~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhCC--CchhhHHH
Confidence 888888886 56666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.88 E-value=11 Score=32.79 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=84.4
Q ss_pred chhHHHhhccCCCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHHccCC
Q 007530 17 SSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNND-TLTSNILINFYSKCGLISGARKVFDEMP 95 (600)
Q Consensus 17 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~ 95 (600)
.-..+.+....+++|+...+..++..+.+.|.+.... +++..++-+| ..+...|++.-. ....+.++=-.|.
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDML 85 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHHH
Confidence 3445666677788999999999999999988755444 4445555444 445545544322 2233444433443
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007530 96 QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 164 (600)
.+=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...--.++....+.
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333346778888899999999999988775332 2223355666666666666555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.88 E-value=12 Score=32.15 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCChHHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMP-FDATASMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~ 425 (600)
-...++.+.+..+++.+.--..-.|...++. ...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 3456678888888877742222222233333 334667888888888888873 2355555667777777655545555
Q ss_pred HHHHHHhcCCCC
Q 007530 426 IAAKQLFGMEPD 437 (600)
Q Consensus 426 ~~~~~~~~~~p~ 437 (600)
....++++..++
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 556666666554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.78 E-value=34 Score=37.33 Aligned_cols=174 Identities=12% Similarity=0.050 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHH----HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 007530 71 SNILINFYSKCGLISGARKVFDEMPQRCIVSWNTII----GSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146 (600)
Q Consensus 71 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~ 146 (600)
...-+++..+...++.|..+-..-.- |...-..+. +-+.+.|++++|..-|-+-+.. +.|. .++.-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhc
Confidence 34556777778888888888765432 222323333 3455789999999888776554 4443 3455555
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHH
Q 007530 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV-TWSSMVAGFVQNELYEEALILFR 225 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~-~~~~li~~~~~~g~~~~A~~~~~ 225 (600)
....+..-..+++.+.+.|+. +...-+.|+++|.+.++.+.-.++.+...+.... -....+..+.+.+-.++|..+-.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 666666777788888888876 5666688999999999999988888776632111 13344555555565666555443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 226 RAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 226 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+... .......+ +-..+++++|.+.+..
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 3221 12222222 2345566666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.73 E-value=17 Score=33.78 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLG--LEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
.|-.=+..-.+.|++++|.+.|+.+...- -+-...+...++.++-+.++++.|....++.++.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33333444556677777777777776542 1123445555566666667777777766666664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.63 E-value=5.4 Score=38.60 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc--CC----ChHHHHHHHHHHHHhCC---CCChhHHHHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAA--KR----DVFECKQLHVFALKAAM---DRNVFVGTALLDV 179 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~ 179 (600)
++.+.+++.|.+.| +.-+.++|.+....... .. ....+..+|+.|.+..+ .++..++.+|+.+
T Consensus 79 ~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 79 KEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 45566778888888 77777766654433332 12 23456677777777643 3344445555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.22 E-value=18 Score=33.32 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Q 007530 204 WSSMVAGFVQNELYEEALILFRR 226 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~ 226 (600)
|+--...|.++|.++-|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 44444555555555554444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.13 E-value=17 Score=32.85 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=92.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 380 (600)
...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++..|.+-|...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456777777788888888888888888774 332 22222222233346788888776665544333333333332222
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcC
Q 007530 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-------AGNHLLLSNIYAANR 453 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 453 (600)
.+.-++.+|..-+.+--...|..-|...+-.+.-.+-.+ +.+++++.+...++ ..+|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 234466666544433212345566766555443221111 22333333322222 357888999999999
Q ss_pred ChHHHHHHHHHhhhCC
Q 007530 454 RWEEVARARKLIRDSE 469 (600)
Q Consensus 454 ~~~~a~~~~~~m~~~~ 469 (600)
..++|..+|+.....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999887654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.05 E-value=17 Score=33.82 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=99.7
Q ss_pred hCCCCchhHHHHHHHHH-HhcCChHHHHHHHccCCC--CC-----cchHHHHHHHHHcCCChhHHHHHHHHHHHc---CC
Q 007530 62 MGLNNDTLTSNILINFY-SKCGLISGARKVFDEMPQ--RC-----IVSWNTIIGSYTTNGREQEAVALFINMLRE---GK 130 (600)
Q Consensus 62 ~g~~~~~~~~~~li~~y-~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 130 (600)
++-.||+..-|..-+.- .+...+++|+.-|++..+ +. ..+.-.+|..+.+.|++++.++.|.+|+.. .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA- 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA- 98 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-
Confidence 34566666555433221 134577788888876643 22 234456788888889999888888887642 1
Q ss_pred C--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHccCCCC----
Q 007530 131 T--PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA-MDRNV----FVGTALLDVYAKCGLISDASRVFESMPER---- 199 (600)
Q Consensus 131 ~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~~---- 199 (600)
+ .-+.-+.++++...+...+.+.-..+++..++.- -..+. .+-+.|...|...|.+..-.++++++...
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 1234467777777777777777766666554431 00111 23345667777777777777777665420
Q ss_pred -----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 200 -----------NEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 200 -----------d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
=...|..=|..|..+.+-.+-..+|++..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12345566667777776666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.00 E-value=2.1 Score=40.56 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455666677778888888888888888888888888888888888888888888888764
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.53 Score=28.18 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
+|..+...+...|+++.|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666666677777777777777766663
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.77 E-value=19 Score=35.10 Aligned_cols=126 Identities=17% Similarity=0.042 Sum_probs=70.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHccCCHHHHHHHHHHHH---HhcCCCccHHHHHHH
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLH-P----NEQTYISVLSACSHIGMVEKGKSYFDLMV---KQHNVLPNVFHYSCM 379 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~-p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p~~~~~~~l 379 (600)
|..++.-.+.++++++.|+...+---. . .-..+..|-..|....|+++|.-+..+.. +.+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 445555566677777777766542111 1 12356677777777777777766655432 233333222233333
Q ss_pred H-----HHHHhcCCHHHHHHHHHc-------CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 380 I-----DILGRAGLIHEAYDLILN-------MPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 380 i-----~~~~~~g~~~~A~~~~~~-------m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+ -+|...|.+-+|.+.-++ ++..|- ......+...|+..|+.+.|..-++.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 234455555555544443 333322 34556677778888888888877777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.1 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777743
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=24 Score=33.93 Aligned_cols=73 Identities=5% Similarity=-0.015 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
+..+-...+.++++.|+.+-.-.+.+.+..+++ .-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 444444444555555543222222222222221 22345555666654 566666666553 33554444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.53 E-value=2.9 Score=35.76 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++.+.++.++.-+.-+.|..+..-..-+..+...|+|++|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666777766666666677777777777777777665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.92 Score=27.78 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.9 Score=35.18 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=44.6
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37788888888888888888888888888888889999999999988887665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.40 E-value=23 Score=35.27 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP----DNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
....+|..+...+++.|.++.|...+.++....+ ..+.....-+......|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999998552 2466777789999999999999999888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.82 E-value=35 Score=35.02 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=104.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
..-+++..+.++-++.-...+-.+|..-| .+...|..++..|... ..+.-..+++++++..+. |++...-|+..|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 45567788888877777777788888865 4677888888888877 556677788888887665 555555566666
Q ss_pred HHcCCHHHHHHHHccCCCC------C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccC
Q 007530 181 AKCGLISDASRVFESMPER------N---EVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTISSVICACAGLA 250 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~~------d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g 250 (600)
-+ ++.+.+...|.....+ + -..|..++.-- ..+.+..+.+..+.... |..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 65 7777777777654321 1 12566655421 24566666666666532 44444555556666777778
Q ss_pred chHHHHHHHHHHHHhC
Q 007530 251 ALIQGKQVHAVLCKTG 266 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~ 266 (600)
++.++.++...+++..
T Consensus 220 N~~eai~Ilk~il~~d 235 (711)
T COG1747 220 NWTEAIRILKHILEHD 235 (711)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 8888888888777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.1 Score=26.99 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=18.2
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 160 FALKAAMDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
++++..+. +..+|+.|...|...|++++|+
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 34444332 5666777777777777777664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.34 E-value=7.8 Score=34.28 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPERN------EVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356778888888888888888888877642 33566777788888888888887777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.26 E-value=26 Score=30.97 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--Ccc----HHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ--TYISVLSACSHIGMVEKGKSYFDLMVKQHNV--LPN----VFH 375 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~~ 375 (600)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++...... .++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44455556666666666666666666654444432 3445556666666666666666555321111 111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
|..|. +...+++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 22456777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.08 E-value=8.2 Score=33.39 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=9.5
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQV 229 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~ 229 (600)
..+.|+..+|+..|.+.-.
T Consensus 104 ~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HhhcccHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.86 E-value=2.4 Score=25.28 Aligned_cols=27 Identities=4% Similarity=0.159 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQ 330 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 330 (600)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666777777777766665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.68 E-value=7.1 Score=30.40 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 320 EVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 320 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+...-++.+....+.|+.....+.+.||.+..++..|.++|+.+..+.|-.-+ .|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 55555666666778899999999999999999999999999999765553333 6776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.8 Score=38.89 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=64.5
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHH
Q 007530 39 TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEA 118 (600)
Q Consensus 39 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
+++.+...+.+......++.+++.+...+....+.|+..|++.+..+...++++.... .-...+++.+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5677777888888888999998877677799999999999999888888888884332 4445677777777777777
Q ss_pred HHHHHHHH
Q 007530 119 VALFINML 126 (600)
Q Consensus 119 ~~~~~~m~ 126 (600)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.62 E-value=68 Score=35.22 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=99.5
Q ss_pred hhchhHHHhhccCCCCCCHhHHHHHHHHH----hccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007530 15 SFSSSAIASASANANATELSTLQATLQSC----ARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKV 90 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 90 (600)
....-++..++..+..++ +...+.+.| -+.|+++.|.+-+=+-+ |.--. ..+|.-|....++..-..+
T Consensus 348 ~ly~~Ai~LAk~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~----s~Vi~kfLdaq~IknLt~Y 419 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP----SEVIKKFLDAQRIKNLTSY 419 (933)
T ss_pred hhHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh----HHHHHHhcCHHHHHHHHHH
Confidence 334445555665555544 444555544 46889988876554433 43222 2345555555566666666
Q ss_pred HccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 007530 91 FDEMPQR---CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMD 167 (600)
Q Consensus 91 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 167 (600)
++.+.+. +...-+.|+.+|.+.++.+.-.++.+.-- .|.. .+-+...+..|.+.+-.++|..+-....+
T Consensus 420 Le~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~---- 491 (933)
T KOG2114|consen 420 LEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDEAELLATKFKK---- 491 (933)
T ss_pred HHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHHHHHHHHHhcc----
Confidence 6665543 44556789999999999987766655433 3311 22356677777788878877665433222
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHccCCCC
Q 007530 168 RNVFVGTALLDVYAKCGLISDASRVFESMPER 199 (600)
Q Consensus 168 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 199 (600)
...+...+ +-..|++++|.+.+..++-+
T Consensus 492 -he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 492 -HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred -CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 33333433 44568999999999999853
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.39 E-value=7.3 Score=26.39 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHHCCC
Q 007530 442 HLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGY 509 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 509 (600)
...++-++.+.|++++|.+..+.+.+. .|...++...-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999988754 36777777777777778887774
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.7 Score=29.58 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.+..+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466666777777788999999999999999999999999999988544432 4446766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.06 E-value=50 Score=33.23 Aligned_cols=182 Identities=11% Similarity=0.161 Sum_probs=118.7
Q ss_pred hCCHHHHHHHHhcCCC----cCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHH
Q 007530 284 CGCVVDAYFVFSGIEE----KNVVLWNTMISG-FSRHARSVEVMILFEKMQQAGLHPNE----QTYISVLSACSHIGMVE 354 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 354 (600)
.|+.++|.+.+..+.. +.+..+-+|+.+ .....++.+|+.+|+...-. -|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5788888888887763 345667777665 44567899999999988763 4432 23344455567889999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHH-HHHHHHHhcC---CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007530 355 KGKSYFDLMVKQHNVLPNVFHYS-CMIDILGRAG---LIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQ 430 (600)
Q Consensus 355 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 430 (600)
++..+-......+.-.|-...|. .++..+.+.+ ..+.-..++..|.-..-...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877776666666566443333 3333444333 4455566667774223356888888899999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHh-----cCChHHHHHHHHHhhhC
Q 007530 431 LFGMEPDNAGNHLLLSNIYAA-----NRRWEEVARARKLIRDS 468 (600)
Q Consensus 431 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~ 468 (600)
+..+... ...-...+..|.. ....+++.+.+..+...
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9987643 2333344555533 34567777766655443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.79 E-value=0.59 Score=39.71 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=56.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007530 141 VLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEA 220 (600)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 220 (600)
++..+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666677777777777777766666778888888888888777777777774332 3334566666666777777
Q ss_pred HHHHHHH
Q 007530 221 LILFRRA 227 (600)
Q Consensus 221 ~~~~~~m 227 (600)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.38 E-value=1.7 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 007530 440 GNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888899988888764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.86 E-value=28 Score=29.49 Aligned_cols=64 Identities=8% Similarity=0.038 Sum_probs=33.3
Q ss_pred ccCCchhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCChHHHHHHHccCCCCC-cchHHHHHHHHH
Q 007530 45 RERAPVRGKVCHAKIIGMGLNNDT-LTSNILINFYSKCGLISGARKVFDEMPQRC-IVSWNTIIGSYT 110 (600)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 110 (600)
...++.++..+++.|.-. .|+. ..-..-...+...|++++|.++|+++.+.. ...|..-+.++|
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 466677777777666543 2322 111222233446677777777777776533 224444333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.69 E-value=32 Score=29.96 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
++++.+.+.++.|+...+..++..+.+.|.+..-.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444455555555555555555555554443333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.64 E-value=21 Score=27.80 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 175 ALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
.-+......|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...| .|...+|.
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344556778999999999999988999999888664 6777777777777777766 45444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.82 E-value=2.7 Score=40.24 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCh
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNL 421 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~ 421 (600)
+-|.++|.+++|+..|...+ .+.| +..++..-..+|.+..++.-|+.=.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998765 4456 7777777778899988888776554443 111 1123455555555667899
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
.+|.+-++.+++++|++. -|-..|.+.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999854 3444455555555544443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.79 E-value=2.5 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 440 GNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.74 E-value=12 Score=33.45 Aligned_cols=73 Identities=22% Similarity=0.118 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHHcCCHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA---MDRNVFVGTALLDVYAKCGLISDAS 190 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~ 190 (600)
++|++.|-.+...+ .--++.....+...| ...|.+++.+++-.+++.. -.+|+.++.+|++.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46777777776665 333444444444333 3566777777777666542 2456667777777777777766663
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.69 E-value=86 Score=34.27 Aligned_cols=93 Identities=10% Similarity=-0.134 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHH
Q 007530 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME---PDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
..+...|...+|...+..+....+......+.......|..+.+.....+....+ -.-|..|.-....+++.-..+.
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCH
Confidence 3455667777776666554223444444555555556677777766665432211 0123334445555555445555
Q ss_pred HHHHHHHhhhCCCccC
Q 007530 458 VARARKLIRDSEVKKE 473 (600)
Q Consensus 458 a~~~~~~m~~~~~~~~ 473 (600)
+.-.--...|.++.|.
T Consensus 495 ~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 495 SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 4432222234555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.33 E-value=3.3 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=9.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 007530 409 GSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+.|...+...|++++|+.+++++
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHH
Confidence 33334444444444444444443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.30 E-value=9.3 Score=31.56 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHhc-CCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHH
Q 007530 419 RNLELAEIAAKQLFG-MEPDNAG-NHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSK 496 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 496 (600)
.+..++..+++.+.+ -.|.... ....|+-++.+.++++.++++.+.+.+.. |+..++...
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e------------------~~n~Qa~~L 110 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE------------------PNNRQALEL 110 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC------------------CCcHHHHHH
Confidence 345667777777775 3343222 33345666777788888888777776543 344444444
Q ss_pred HHHHHHHHHHCCCc
Q 007530 497 LEKLVEEMKKLGYK 510 (600)
Q Consensus 497 l~~l~~~m~~~g~~ 510 (600)
=+.+.++|.+.|++
T Consensus 111 k~~ied~itkegli 124 (149)
T KOG3364|consen 111 KETIEDKITKEGLI 124 (149)
T ss_pred HHHHHHHHhhccee
Confidence 44566677777764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.84 E-value=15 Score=35.04 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-C--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 007530 165 AMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-R--------NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN 235 (600)
Q Consensus 165 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~--------d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 235 (600)
|......+-..++..-....++++++..+-.+.. + ..++|--++. .-++++++.++..=.+-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444455555666666666778888777665543 1 2334433333 3467788888888888899999
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
.+|+..+++.+.+.+++..|.++.-.++...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-12
Identities = 99/597 (16%), Positives = 169/597 (28%), Gaps = 208/597 (34%)
Query: 148 KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSM 207
+ F+CK + M +++ + + +S R+F ++ + E M
Sbjct: 30 VDN-FDCKDV------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE----EM 78
Query: 208 VAGFVQNEL------------------------YEEAL-ILFRRAQVLGLEYNQFTISSV 242
V FV+ L Y E L+ QV +YN +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPY 137
Query: 243 ICACAGLAALIQGKQV--HAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK 300
+ L L K V VL G G A + +C F
Sbjct: 138 LKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQCK------MDFK----- 183
Query: 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM-VEKGKSY 359
+ W + ++ S E ++ +M Q L+ + + S S+I + + ++
Sbjct: 184 --IFWLNL-----KNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 360 FD--LMVKQHN----VLPNV--------FHYSCMI----------DILGRAGLIH----- 390
L K + VL NV F+ SC I D L A H
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 391 --------EAYDL---ILNM-----PFDATA------SMWGSLLAS--CR--NYR----- 419
E L L+ P + S+ + N++
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 420 -----------NLELAEIAAKQLF---GMEPDNAGNHLLLSNIYAA--NRRWEEVARARK 463
LE AE +++F + P +A +I + W +V +
Sbjct: 354 KLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSA-------HIPTILLSLIWFDVIK--- 401
Query: 464 LIRDSE--VKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKL------GYKPETEH 515
D V K S VE + K + I IY +L+ +E L Y
Sbjct: 402 --SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 516 DLHDV----EDSRKQELLIHH------SEK--------LALTF--------GLMCLCPGV 549
D D+ D + HH E+ L F G
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 550 PIRIMKNLR-----ICGDCHSFMKFASRIAGRETIVRDLNRF-----HHFTNGSCSC 596
+ ++ L+ IC + + E +V + F + +
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKY----------ERLVNAILDFLPKIEENLICSKYTD 566
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 27/271 (9%), Positives = 80/271 (29%), Gaps = 12/271 (4%)
Query: 276 SLVDMYAKCGCVVDAYFVFSGIEEK-------NVVLWNTMISGFSRHARSVEVMILFEKM 328
+ + A+ + + + ++N ++ G++R E++ + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388
+ AGL P+ +Y + L + Q + + ++ RA +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 389 IHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448
+ + + + + + R++ + P L +
Sbjct: 252 LKAVHKVKPTFSLPPQLP---PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308
Query: 449 YAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKKLG 508
+ V K S+ K K+ ++ + + +L E+ +
Sbjct: 309 HMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYE-- 366
Query: 509 YKPETEHDLHDVEDSRKQELLIHHSEKLALT 539
+ L +++ +L+ + L
Sbjct: 367 GRFSLYPFLCLLDEREVVRMLLQVLQALPAQ 397
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 3e-05
Identities = 19/149 (12%), Positives = 44/149 (29%), Gaps = 7/149 (4%)
Query: 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ--HNVLPNVFHYSCMIDIL 383
+ QA L +Q ++ C + + Q L + Y+ ++
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 384 GRAGLIHEAYDLILNMPFD---ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440
R G E ++ + + + L R + A + L M +
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM--GRQDQDAGTIERCLEQMSQEGLK 233
Query: 441 NHLLLSNIYAANRRWEEVARARKLIRDSE 469
L + + + V +A ++ +
Sbjct: 234 LQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 41.7 bits (96), Expect = 6e-04
Identities = 20/204 (9%), Positives = 55/204 (26%), Gaps = 9/204 (4%)
Query: 1 MKSLLRYKHKFYYKSFSSSAIASASANANATELSTLQATLQSCARERAPVRGKVCHAKII 60
+ L+ + + K + + L LQ + + + +
Sbjct: 60 LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHS 119
Query: 61 GMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRC-------IVSWNTIIGSYTTNG 113
L+ + A + + + +N ++ + G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 114 REQEAVALFINMLREGKTPYSEFTVSSVL-CACAAKRDVFECKQLHVFALKAAMDRNVFV 172
+E V + + G TP + ++ L C +D ++ + +
Sbjct: 180 AFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 173 GTALLDVYAKCGLISDASRVFESM 196
LL + ++ +V +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 5e-04
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 453 RRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYS----KLEKLVEEMKKLG 508
R+W E R R D+ K + + W E K K++ + E ++EK +
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQE-WRE-KAKKD---LEEWNQRQSEQVEKNKINNRI-- 140
Query: 509 YKPETEHDLHDVEDS 523
+ +
Sbjct: 141 ---ADKAFYQQPDAD 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.92 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.67 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.34 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.24 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.22 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.21 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.15 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.0 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.93 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.92 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.84 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.74 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.71 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.41 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.32 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.32 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.1 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.03 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.9 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.81 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.47 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.4 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.35 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.61 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.35 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.19 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.08 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.58 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.98 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.54 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.37 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.76 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.02 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.26 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.9 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.75 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.35 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.23 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.12 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.92 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.5 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=348.86 Aligned_cols=430 Identities=10% Similarity=-0.003 Sum_probs=385.7
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccC--CCCCcchHHHHHHH
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEM--PQRCIVSWNTIIGS 108 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~ 108 (600)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 57788999999999999999999999999854 578889999999999999999999999998 46789999999999
Q ss_pred HHcCCChhHHHHHHHHHHHc---------------CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHH
Q 007530 109 YTTNGREQEAVALFINMLRE---------------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVG 173 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~---------------g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 173 (600)
|.+.|++++|+++|+++... | .+++..+|+.++.++.+.|++++|.++|+.+.+.++. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG-IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSS-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccc-cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 99999999999999853222 2 3446889999999999999999999999999998643 33333
Q ss_pred --------------------------------------HHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHHHHHHHHh
Q 007530 174 --------------------------------------TALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQ 213 (600)
Q Consensus 174 --------------------------------------~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~ 213 (600)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 3336677789999999999999988 799999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 007530 214 NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFV 293 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 293 (600)
.|++++|+++|++|...+ +.+..++..++.++.+.|++++|..++..+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999765 3477889999999999999999999999999764 66889999999999999999999999
Q ss_pred HhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 007530 294 FSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL 370 (600)
Q Consensus 294 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 370 (600)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+.+.+.. +
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--Q 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 99875 3568899999999999999999999999999863 4578899999999999999999999999997543 3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 371 PNVFHYSCMIDILGRAGLIHEAYDLILNM-------PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46789999999999999999999999987 45777 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 442 HLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
|..++.+|.+.|++++|.+.++++.+..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=325.61 Aligned_cols=414 Identities=8% Similarity=-0.067 Sum_probs=365.2
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC-----------
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR----------- 97 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------- 97 (600)
..|+..++..+..+|.+.|+++.|..+++.+... ++++.+++.++.+|.++|++++|+++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4567789999999999999999999999987643 788999999999999999999999999965433
Q ss_pred --------CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH----------------------------
Q 007530 98 --------CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV---------------------------- 141 (600)
Q Consensus 98 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l---------------------------- 141 (600)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |.+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 47899999999999999999999999999874 3333333333
Q ss_pred ----------HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHH
Q 007530 142 ----------LCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMV 208 (600)
Q Consensus 142 ----------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li 208 (600)
+..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 44556778899999999998776 57899999999999999999999999999863 4778999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 007530 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288 (600)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 288 (600)
.+|.+.|++++|.++|+++.... +.+..++..++..|.+.|++++|.+++..+.+.. +.+..+++.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 5578899999999999999999999999999865 557889999999999999999
Q ss_pred HHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 289 DAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 289 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..|.+.|++++|.++|+.+.+
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999875 3578999999999999999999999999999863 44788999999999999999999999999975
Q ss_pred hc---CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 366 QH---NVLPN--VFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 366 ~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.. +..|+ ..+|..++.+|.+.|++++|.++++++ ... .+..+|..+..+|...|++++|...++++++++|++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 42 66787 789999999999999999999999987 233 478999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh
Q 007530 439 AGNHLLLSNIYAA 451 (600)
Q Consensus 439 ~~~~~~l~~~~~~ 451 (600)
+..+..++++|..
T Consensus 584 ~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 584 IMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHhc
Confidence 9999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=254.74 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------chHHHHHHHHHHHHhCCCCchh
Q 007530 202 VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA---------ALIQGKQVHAVLCKTGFGSNMF 272 (600)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~~~~~~~~~~~~~~~~ 272 (600)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4577778888888888888888888888888888888888888887554 3677888888888888888888
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIE----EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888776 36888888888888888888888888888888888888888888888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
+.|++++|.++|++|. +.+..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888884 56888888888888887765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-26 Score=231.44 Aligned_cols=372 Identities=13% Similarity=0.068 Sum_probs=234.1
Q ss_pred HhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCChhHHH
Q 007530 43 CARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGSYTTNGREQEAV 119 (600)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 119 (600)
+...|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++... ..+..+|+.+...|.+.|++++|+
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555555555442 2333444444455555555555555554332 123445555555555555555555
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCC
Q 007530 120 ALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPER 199 (600)
Q Consensus 120 ~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 199 (600)
..|+++.+. .|.+..++..+..++...|++++|...+..+++..+. +..++..+...|...|++++|.+.
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~------- 157 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC------- 157 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH-------
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH-------
Confidence 555555543 2333344555555555555555555555555544322 233344444444444444444444
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
|+++.... +.+..++..+...+...|++++|...+..+++.+ +.+...+..+..
T Consensus 158 ------------------------~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 158 ------------------------YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp ------------------------HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ------------------------HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44444321 1123344444444444444444444444444433 334445555666
Q ss_pred HHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 356 (600)
.+...|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666443 2356778888888888888999999998888752 22467788888889999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 357 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
...|+.+.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++
T Consensus 291 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999887542 456778888999999999999999999886 3344 4788999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCC
Q 007530 435 EPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~ 454 (600)
+|+++..+..++.++...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999988877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-25 Score=226.58 Aligned_cols=353 Identities=14% Similarity=0.052 Sum_probs=308.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC
Q 007530 106 IGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGL 185 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 185 (600)
...+.+.|++++|++.+.++.+. .|.+...+..+...+...|++++|...+..+++..+ .+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 45567789999999999998886 455667777788888899999999999999888753 478899999999999999
Q ss_pred HHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 186 ISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-QFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 186 ~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+++|.+.|+++.+ | +..+|..+...+.+.|++++|++.|+++... .|+ ...+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 5668999999999999999999999999875 454 44566777888899999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NE 337 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 337 (600)
+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 55688999999999999999999999998763 45778999999999999999999999999885 44 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 415 (600)
.++..+...+...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|.+.++++ ..+++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 888999999999999999999999997532 235678999999999999999999999987 2345788999999999
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++++++..|+++..+..++.+|.+.|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=252.01 Aligned_cols=184 Identities=9% Similarity=0.013 Sum_probs=164.6
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCCh
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRD---------VFECKQLHVFALKAAMDRNV 170 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 170 (600)
..++.+|++|++.|++++|+++|++|.+.| ++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 457888899999999999999999999998 99999999999999987654 57788999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE----RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 246 (600)
.+||+||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998864 789999999999999999999999999999999999999999999999
Q ss_pred HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh
Q 007530 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC 284 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 284 (600)
++.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998888764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-22 Score=208.52 Aligned_cols=325 Identities=8% Similarity=-0.012 Sum_probs=229.3
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+...|..+...+.+.|++++|+.+|+++.+. .|.+..++..+..++...|++++|...+..+++.++. +..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 4456666777777777777777777777665 3556666777777777777777777777777766533 456666677
Q ss_pred HHHHHcCCHHHHHHHHccCCCC---CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007530 178 DVYAKCGLISDASRVFESMPER---NE---VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~---d~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 251 (600)
.+|.+.|++++|.+.|+++.+. +. ..|..++..+...+ +......+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 7777777777777777666442 22 44555444321111 1112223444555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKM 328 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 328 (600)
+++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|+.+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555543 34556666777777777777777777776642 46778888888888888999999999888
Q ss_pred HHcCCCCCH-HHHHHH------------HHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHH
Q 007530 329 QQAGLHPNE-QTYISV------------LSACSHIGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILGRAGLIHEAY 393 (600)
Q Consensus 329 ~~~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 393 (600)
... .|+. ..+..+ ...|.+.|++++|...|+.+.+..+-.|. ..++..+..++.+.|++++|.
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 864 4443 333333 78899999999999999999864322222 458899999999999999999
Q ss_pred HHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 394 DLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 394 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
..++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++.+...
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 999986 3334 689999999999999999999999999999999999888888865443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=211.93 Aligned_cols=427 Identities=10% Similarity=-0.038 Sum_probs=306.1
Q ss_pred hHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHH
Q 007530 34 STLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYT 110 (600)
Q Consensus 34 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 110 (600)
..+...-..+...|+++.|...+..+++.. |++.++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345555666777778888888888777765 5777777777888888888888887776542 34567777777788
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH---HHHHHHcCCHH
Q 007530 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL---LDVYAKCGLIS 187 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~ 187 (600)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+.+.+..|+....+.- ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 8888888888888777764 445455555554444333333333333222222111111111100 00001111111
Q ss_pred HHHHHHccCC---------CC-CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCCC--------CCHHHHHH
Q 007530 188 DASRVFESMP---------ER-NEVTWSSMVAGFVQ---NELYEEALILFRRAQV-----LGLE--------YNQFTISS 241 (600)
Q Consensus 188 ~A~~~f~~m~---------~~-d~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ 241 (600)
.+...+.... .+ +...|......+.. .|++++|+..|+++.. ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1222222211 11 24455555555554 8999999999999987 3112 23456777
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCCh
Q 007530 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 318 (600)
+...+...|++++|...+..+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888899999999999999999988643 88899999999999999999999987653 4677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (600)
++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998863 3356788888999999999999999999997653 23566888999999999999999999987
Q ss_pred C----CCCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 399 M----PFDAT----ASMWGSLLASCRN---YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 399 m----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+ +..++ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++|...++...+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6 22233 4489999999999 99999999999999999999999999999999999999999999999886
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
.+
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 54
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=212.17 Aligned_cols=409 Identities=8% Similarity=-0.089 Sum_probs=301.0
Q ss_pred CCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHH
Q 007530 31 TELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIG 107 (600)
Q Consensus 31 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 107 (600)
|+..++..+..++...|+++.|...+..+++.. +.+..++..+..+|.+.|++++|...|+.+.. ++......++.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 688999999999999999999999999999876 56778999999999999999999999997643 34555566666
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC---------CCChhHHHHHHH
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM---------DRNVFVGTALLD 178 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~ 178 (600)
.+........+.+.+..+...+ ..|+...+..-...............+...+..... +.+...+..+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHTTC----------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5555444445544444444443 222222222111111111122222222111111111 112444445555
Q ss_pred HHHH---cCCHHHHHHHHccCCC----------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007530 179 VYAK---CGLISDASRVFESMPE----------------R-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 179 ~y~~---~g~~~~A~~~f~~m~~----------------~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 238 (600)
.+.. .|++++|...|+++.+ + +..+|..+...+...|++++|+..|+++.... |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 5554 8899999998887644 1 35678888999999999999999999998764 44778
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhc
Q 007530 239 ISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRH 315 (600)
Q Consensus 239 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 315 (600)
+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++.. ..+...|..+...|...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 8888899999999999999999998765 5567788999999999999999999998764 34677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHh---cCC
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGR---AGL 388 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~ 388 (600)
|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...|.+ .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998863 335678888899999999999999999998764333333 4488899999999 999
Q ss_pred HHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 389 IHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 389 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+++|...++++ .. +.+..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999886 22 34578899999999999999999999999999999987766555
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=196.07 Aligned_cols=346 Identities=10% Similarity=0.005 Sum_probs=218.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 007530 65 NNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSV 141 (600)
Q Consensus 65 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l 141 (600)
+.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+..+|.+.|++++|+..|+++.+.+ |.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 45667778888888888888888888887642 467788888888888888888888888888863 5567788888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHH------------HHHcCCHHHHHHHHccCCC---CCHHH
Q 007530 142 LCACAAKRDVFECKQLHVFALKAAMDRNV---FVGTALLDV------------YAKCGLISDASRVFESMPE---RNEVT 203 (600)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~------------y~~~g~~~~A~~~f~~m~~---~d~~~ 203 (600)
..++...|++++|...+..+.+..+. +. .++..++.. |.+.|++++|...|+++.+ .+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 88888888888888888888776432 33 455555443 6666666666666666542 35556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007530 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 283 (600)
|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~--- 254 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV--- 254 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH---
Confidence 6666666666666666666666665532 2345556666666666666666666666665543 2222222222000
Q ss_pred hCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHH
Q 007530 284 CGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-----EQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
.....+..+...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|..
T Consensus 255 ----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 255 ----------------KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 00011122355666667777777777776663 343 2355566666667777777777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH------------HHHcC-----
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLAS------------CRNYR----- 419 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~~----- 419 (600)
.++.+.+.. +.+...|..+..+|...|++++|...++++ ...|+ ...+..+..+ |...|
T Consensus 317 ~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 777665431 224566666777777777777777776665 33443 4444444422 22223
Q ss_pred ChHHHHHHHHH-HhcCCCCC
Q 007530 420 NLELAEIAAKQ-LFGMEPDN 438 (600)
Q Consensus 420 ~~~~a~~~~~~-~~~~~p~~ 438 (600)
+.+++.+.+++ +++..|++
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGG
T ss_pred CHHHHHHHHHHHHHHhCCCC
Confidence 56677888876 66777764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=199.29 Aligned_cols=423 Identities=7% Similarity=-0.059 Sum_probs=323.0
Q ss_pred HhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCC---CCCcchHHHHHHHH
Q 007530 33 LSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMP---QRCIVSWNTIIGSY 109 (600)
Q Consensus 33 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 109 (600)
...+...-..+.+.|+++.|...+..+++.. +.++.++..+...|.+.|++++|.+.|+++. ..+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567777788889999999999999999876 5678899999999999999999999999865 34677899999999
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHHcCCHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAM--DRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~ 187 (600)
...|++++|+..|+.+... |+.. ...+..+...+....+...+..+++..+ .+........+..|....+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN----GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHHHHHHHHHHHhcC----CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999644222 2211 1112233334445677777777755421 111122344556677788888
Q ss_pred HHHHHHccCCCCCHH---HHHHHHHHHHhC--------CCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHc
Q 007530 188 DASRVFESMPERNEV---TWSSMVAGFVQN--------ELYEEALILFRRAQVLGLEYN--------QFTISSVICACAG 248 (600)
Q Consensus 188 ~A~~~f~~m~~~d~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~ 248 (600)
.+...+......+.. .+..+...+... |++++|+.+|+++... .|+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 888888877765433 444444433332 4789999999998864 343 2246666677888
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
.|++++|...+..+++.. |+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999875 4478888999999999999999999997763 46788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CC
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PF 401 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 401 (600)
+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ |.
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9998863 2346788889999999999999999999997653 335668888999999999999999999876 11
Q ss_pred C----CCHHHHHHHHHHHHHc----------CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 402 D----ATASMWGSLLASCRNY----------RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 402 ~----p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
. .....+..+...+... |++++|...++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1233345556677777 9999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 007530 468 SE 469 (600)
Q Consensus 468 ~~ 469 (600)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 54
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-18 Score=170.01 Aligned_cols=312 Identities=8% Similarity=-0.001 Sum_probs=208.2
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
+..|..+...+.+.|++++|+..|+++.+. .|.+..++..+...+...|++++|...+..+++..+. +..++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 445667777777788888888888877776 3556667777777777777777777777777776433 5566777777
Q ss_pred HHHHcCCHHHHHHHHccCCC--C----CHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 179 VYAKCGLISDASRVFESMPE--R----NEVTWSSM------------VAGFVQNELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~--~----d~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
.|.+.|++++|...|++..+ | +...+..+ ...+...|++++|+..|+++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------ 147 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL------------ 147 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH------------
Confidence 77777777777777776644 2 22233333 344445555555555555444
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC
Q 007530 241 SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR 317 (600)
Q Consensus 241 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 317 (600)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+
T Consensus 148 -----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 148 -----------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp -----------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred -----------------------HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 432 23344455555555555555555555554432 345566666667777777
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHccCCHHHHHHHHHHHHHhcCCCccH--HHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLHPN-EQTYI------------SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV--FHYSCMIDI 382 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~ 382 (600)
+++|+..|++..+. .|+ ...+. .+...+...|++++|...++.+.+...-.+.. ..+..+...
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 77777777777664 232 22221 23556778899999999998887543222221 335567788
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 383 LGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88999999999988876 2234 678899999999999999999999999999999988887777776554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-18 Score=168.76 Aligned_cols=307 Identities=12% Similarity=0.011 Sum_probs=236.0
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAG 210 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 210 (600)
|...+..+...+...|++++|...+..+++..+. +..++..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456677777788888888888888888877543 567777788888888888888888877643 356677777888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCC---CH-HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 211 FVQNELYEEALILFRRAQVLGLEY---NQ-FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
|.+.|++++|+..|++.... .| +. ..+..+... .. ...+..+...|...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccC
Confidence 88888888888888877654 34 22 122111111 00 1123335678899999
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLM 363 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 363 (600)
+++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 567889999999999999999999999998863 446788889999999999999999999999
Q ss_pred HHhcCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHcC-CCCCC-H----HHHHHHHHHHHHcCChHHHH
Q 007530 364 VKQHNVLPNVFHYS------------CMIDILGRAGLIHEAYDLILNM-PFDAT-A----SMWGSLLASCRNYRNLELAE 425 (600)
Q Consensus 364 ~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~a~ 425 (600)
.+...- +...+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|.
T Consensus 215 ~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 765322 222222 3366789999999999999886 22333 3 23556778899999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 426 IAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
..++++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=184.36 Aligned_cols=402 Identities=9% Similarity=-0.024 Sum_probs=298.2
Q ss_pred CCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHH
Q 007530 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109 (600)
Q Consensus 30 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 109 (600)
|.+..++..+..++...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|+.+ ..+....+..+..+
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ 133 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPM 133 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHH
Confidence 3467888889999999999999999999999876 567889999999999999999999999744 33333334445566
Q ss_pred HcCCChhHHHHHHHHHHHcC-----CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHH-
Q 007530 110 TTNGREQEAVALFINMLREG-----KTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRN-VFVGTALLDVYAK- 182 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~- 182 (600)
...+...+|+..++++.... ...|+...+. .+....+.+.+...+..... ..+. ......+...+..
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhh
Confidence 66677789999999986541 0223333333 33334444433322211111 1111 1133334433332
Q ss_pred -------cCCHHHHHHHHccCCC--CC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 183 -------CGLISDASRVFESMPE--RN--------EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA 245 (600)
Q Consensus 183 -------~g~~~~A~~~f~~m~~--~d--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 245 (600)
.|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++.... .|+...+..+...
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 2578999999988765 22 235777778899999999999999999885 4667888889999
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999876 55788899999999999999999999998763 45678999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhc----------CC
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----NVFHYSCMIDILGRA----------GL 388 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~ 388 (600)
..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |+
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999998863 34567888899999999999999999999875432111 222344556677777 99
Q ss_pred HHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 389 IHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
+++|...|++. ... .+...|..+...+...|++++|...+++++++.|+++....
T Consensus 444 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999987 223 45789999999999999999999999999999998765433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=172.78 Aligned_cols=346 Identities=12% Similarity=0.081 Sum_probs=162.6
Q ss_pred hcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 007530 80 KCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHV 159 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (600)
+.|++++|.+++++++.|+ +|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996664 999999999999999999999964 2477799999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007530 160 FALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTI 239 (600)
Q Consensus 160 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 239 (600)
.+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 44578899999999999999999988864 67789999999999999999999999977 368
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChH
Q 007530 240 SSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSV 319 (600)
Q Consensus 240 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 319 (600)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999988 378999999999999999999988887765 44444556889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHHhcCCHHH
Q 007530 320 EVMILFEKMQQAGLHPNEQTYISVLSACSH--IGMVEKGKSYFDLMVKQHNVLP------NVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 320 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 391 (600)
+|+.+++...... +-....|+-+.-++++ .+++.+..+.|. +.-+++| +...|.-++-.|...+.++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987543 2234455555545554 455555555554 3345555 45678999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 392 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
|...+-+-+ |+.---..+.....+..+.+.--++..-.++-.| ...+-|..++...=+.+.+.++++.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 988766553 2211112222333344444444444433333333 3444555555544455555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=164.23 Aligned_cols=287 Identities=11% Similarity=-0.023 Sum_probs=174.9
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHH
Q 007530 132 PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMV 208 (600)
Q Consensus 132 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li 208 (600)
+.+...+..+...+...|++++|..+++.+++..+. +...+..++..+.+.|++++|..+|+++.+ .+...|..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 344445555555555555555555555555554322 333444444555555555555555544432 2344445555
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCH
Q 007530 209 AGFVQNE-LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCV 287 (600)
Q Consensus 209 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 287 (600)
..+...| ++++|+..|++.. +.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKAT-----------------------------------TLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHH-----------------------------------TTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHH-----------------------------------HhC-CccHHHHHHHHHHHHHccCH
Confidence 5555555 4555555555444 332 22344445555555555555
Q ss_pred HHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 288 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555555554432 234555556667777777777777777776642 3345667777777777788888877777776
Q ss_pred HhcC-------CCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 365 KQHN-------VLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 365 ~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
+... .+.....+..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 4321 1234567778888888888888888888776 22 2356788888888888999999999999999999
Q ss_pred CCCcchHHHHHHHH-HhcCChH
Q 007530 436 PDNAGNHLLLSNIY-AANRRWE 456 (600)
Q Consensus 436 p~~~~~~~~l~~~~-~~~g~~~ 456 (600)
|+++..+..++.++ ...|+.+
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC--
T ss_pred CCchHHHHHHHHHHHHHhCchh
Confidence 99888888888887 4555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-16 Score=161.78 Aligned_cols=365 Identities=10% Similarity=-0.005 Sum_probs=274.5
Q ss_pred CchhHHHHHHHHHHh----cCChHHHHHHHccCCC-CCcchHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCChh
Q 007530 66 NDTLTSNILINFYSK----CGLISGARKVFDEMPQ-RCIVSWNTIIGSYTT----NGREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 66 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
.++.....|-.+|.. .+++++|...|+...+ .+..++..|...|.. .+++++|++.|++..+.| +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 356677777777777 7889999988886543 467778888888888 888999999999888876 566
Q ss_pred hHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHHHHHHHccCCC-CCHHHHHHH
Q 007530 137 TVSSVLCACAA----KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----CGLISDASRVFESMPE-RNEVTWSSM 207 (600)
Q Consensus 137 t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~l 207 (600)
.+..+...+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777 788999999999888875 56777888888887 7888999988887654 467788888
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 208 VAGFVQ----NELYEEALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 208 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
...|.+ .+++++|++.|++..+.| +...+..+...+.. .+++++|...+....+.| +...+..|..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888887 888999999998887764 45566666666664 678888888888887765 3456666777
Q ss_pred HHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 280 MYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMISGFSRH-----ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 280 ~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
+|.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 7777 7888888888887654 4566777777777776 78888888888888765 34555666666665
Q ss_pred cC---CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----c
Q 007530 350 IG---MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN----Y 418 (600)
Q Consensus 350 ~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 418 (600)
.| +.++|.++|+...+. .+...+..|..+|.. .+++++|.++|++.-...+...+..|...+.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 45 778888888888643 355677777788877 78888888888876323467777778877777 7
Q ss_pred CChHHHHHHHHHHhcCCCC---CcchHHHHHHHHH
Q 007530 419 RNLELAEIAAKQLFGMEPD---NAGNHLLLSNIYA 450 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 450 (600)
++.++|...++++.+.+|+ ++.....|+.++.
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 8888888888888887743 5555555555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-16 Score=163.42 Aligned_cols=391 Identities=11% Similarity=0.009 Sum_probs=231.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 007530 67 DTLTSNILINFYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLC 143 (600)
Q Consensus 67 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~ 143 (600)
|...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++++.. .|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4445555554 2445555555555555432 2 3334555555555555555555555555543 134444444433
Q ss_pred HH-hcCCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHH---------cCCHHHHHHHHccCCC-CC---HHH
Q 007530 144 AC-AAKRDVFECKQ----LHVFALKA-AMDR-NVFVGTALLDVYAK---------CGLISDASRVFESMPE-RN---EVT 203 (600)
Q Consensus 144 ~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~m~~-~d---~~~ 203 (600)
.. ...|+.+.|++ +++.+++. |..| +..+|...+....+ .|+++.|.++|++..+ |+ ...
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 21 23344444433 44444332 3222 23444444444433 4556666666655433 21 122
Q ss_pred HHHHHHHH-------------HhCCCHHHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHHcc----
Q 007530 204 WSSMVAGF-------------VQNELYEEALILFRRAQ------VLG---LEYNQ--------FTISSVICACAGL---- 249 (600)
Q Consensus 204 ~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~a~~~~---- 249 (600)
|....... .+.+++++|..++.++. +.. ++|+. ..|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22211100 12345666776666532 111 23431 2333333222211
Q ss_pred Cch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------hCCHH-------HHHHHHhcCCC---c-CHhHHHH
Q 007530 250 AAL----IQGKQVHAVLCKTGFGSNMFAASSLVDMYAK-------CGCVV-------DAYFVFSGIEE---K-NVVLWNT 307 (600)
Q Consensus 250 g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~ 307 (600)
++. +.+..+++.++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 35667788877763 5567788888887775 68876 88888887653 3 5778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHH-H
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHPNE--QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDI-L 383 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~ 383 (600)
++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|+...+. .| +...|...... +
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHH
Confidence 888888889999999999988874 5542 46777777777888899999999888643 23 23333322222 3
Q ss_pred HhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHH
Q 007530 384 GRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG----NHLLLSNIYAANRRWEE 457 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~ 457 (600)
...|+.++|..+|++. ...| +...|..++......|+.+.|..++++++...|.++. .+...+......|+.+.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3578888888888865 2223 5778888888888888899999999988887766554 66666777778888888
Q ss_pred HHHHHHHhhh
Q 007530 458 VARARKLIRD 467 (600)
Q Consensus 458 a~~~~~~m~~ 467 (600)
+..+.+++.+
T Consensus 482 ~~~~~~r~~~ 491 (530)
T 2ooe_A 482 ILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-15 Score=159.68 Aligned_cols=401 Identities=10% Similarity=0.045 Sum_probs=295.2
Q ss_pred CCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC--CCcchHHHHHH
Q 007530 30 ATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ--RCIVSWNTIIG 107 (600)
Q Consensus 30 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 107 (600)
|-|...|..++.. ...|+++.|+.+++.+++. .+.+...|..++..+.+.|++++|+++|++... |++..|...+.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3466788888874 6789999999999999875 366788999999999999999999999998764 77778888775
Q ss_pred HH-HcCCChhHHHH----HHHHHHHc-CCCCCChhhHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhH
Q 007530 108 SY-TTNGREQEAVA----LFINMLRE-GKTPYSEFTVSSVLCACAA---------KRDVFECKQLHVFALKAAMDRNVFV 172 (600)
Q Consensus 108 ~~-~~~g~~~~A~~----~~~~m~~~-g~~~p~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~ 172 (600)
.. ...|+.++|.+ +|+..+.. |..+++...|...+..... .|+++.|+.+|+.+++........+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45677777665 77777654 4123455667776666544 6789999999999988311111233
Q ss_pred HHHHHHHH-------------HHcCCHHHHHHHHcc-------CC------CCC--------HHHHHHHHHHHHhC----
Q 007530 173 GTALLDVY-------------AKCGLISDASRVFES-------MP------ERN--------EVTWSSMVAGFVQN---- 214 (600)
Q Consensus 173 ~~~li~~y-------------~~~g~~~~A~~~f~~-------m~------~~d--------~~~~~~li~~~~~~---- 214 (600)
|....... .+.++++.|..++.. +. .|+ ...|...+.....+
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 123556777766553 11 111 35677666544333
Q ss_pred CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCchH-------HHHHHHHHHHHhCCCCchhHHHH
Q 007530 215 ELY----EEALILFRRAQVLGLEYNQFTISSVICACAG-------LAALI-------QGKQVHAVLCKTGFGSNMFAASS 276 (600)
Q Consensus 215 g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 276 (600)
++. ++++.+|++..... +-+...|......+.+ .|+++ +|..++...++.-.+.+..++..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 47888999888752 3356677777776664 78887 89999999987434567889999
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC--c-CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHcc
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEE--K-NV-VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSA-CSHI 350 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~ 350 (600)
++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHc
Confidence 99999999999999999998753 3 33 58999999999999999999999999875 333 2333322222 3358
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC--HHHHHHHHHHHHHcCChHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PFDAT--ASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~~~~a 424 (600)
|+.++|..+|+..++.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998654 235778999999999999999999999886 33343 56899999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 007530 425 EIAAKQLFGMEPD 437 (600)
Q Consensus 425 ~~~~~~~~~~~p~ 437 (600)
..+..++.+..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999998874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-16 Score=152.99 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=214.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (600)
.+...+..+...+...|++++|+++|+++.+. .|.+...+..++.++...|+.++|..++..+++..+. +..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 57778889999999999999999999999987 4667778888889999999999999999999998644 77889999
Q ss_pred HHHHHHcC-CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 177 LDVYAKCG-LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 177 i~~y~~~g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
...|...| ++++|.+.|++..+ .+...|..+...|...|++++|+..|++..... +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998654 357789999999999999999999999988753 22334454555556666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007530 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAG 332 (600)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 332 (600)
++|...+..+.+.. + .+...|..+...+...|++++|+..|++..+..
T Consensus 176 ~~A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALSIA-P-------------------------------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHTTC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-C-------------------------------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 66666666555432 2 244556666666666777777777776666531
Q ss_pred --------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC
Q 007530 333 --------LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA 403 (600)
Q Consensus 333 --------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 403 (600)
.+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...|
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 12334677777888888888888888888876542 235667778888888888888888888876 4445
Q ss_pred -CHHHHHHHHHHH-HHcCCh
Q 007530 404 -TASMWGSLLASC-RNYRNL 421 (600)
Q Consensus 404 -~~~~~~~ll~~~-~~~~~~ 421 (600)
+...+..+..++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 466666666666 344443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-15 Score=153.90 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=298.3
Q ss_pred CCCcchHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCC
Q 007530 96 QRCIVSWNTIIGSYTT----NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA----KRDVFECKQLHVFALKAAMD 167 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~ 167 (600)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 3577788888888887 899999999999999876 66788888888888 899999999999999876
Q ss_pred CChhHHHHHHHHHHH----cCCHHHHHHHHccCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHH
Q 007530 168 RNVFVGTALLDVYAK----CGLISDASRVFESMPE-RNEVTWSSMVAGFVQ----NELYEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 168 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 238 (600)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 67788889999998 8999999999998765 467788889988988 889999999999998865 5677
Q ss_pred HHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHH
Q 007530 239 ISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMI 309 (600)
Q Consensus 239 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 309 (600)
+..+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777877 889999999999999876 56677888888887 7899999999998664 5677777888
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 007530 310 SGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI-----GMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 310 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 380 (600)
..|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|+...+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88887 899999999999998765 455666777777776 8999999999998753 3 445777788
Q ss_pred HHHHhcC---CHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--
Q 007530 381 DILGRAG---LIHEAYDLILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA-- 451 (600)
Q Consensus 381 ~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 451 (600)
..|.+.| +.++|.++|++.-...++..+..|...+.. .+++++|...++++.+.. ++..+..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 789999999887334678899999999988 899999999999999864 56789999999998
Q ss_pred --cCChHHHHHHHHHhhhCC
Q 007530 452 --NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 452 --~g~~~~a~~~~~~m~~~~ 469 (600)
.+++++|...++...+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999998766
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-17 Score=162.79 Aligned_cols=277 Identities=11% Similarity=-0.021 Sum_probs=189.8
Q ss_pred CCHHHHHH-HHccCCC--C-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH
Q 007530 184 GLISDASR-VFESMPE--R-----NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQG 255 (600)
Q Consensus 184 g~~~~A~~-~f~~m~~--~-----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 255 (600)
|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5543322 1 23345555556666666666666666655542 23444555555556666666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-CHhHHHH---------------HHHHHHhcCC
Q 007530 256 KQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-NVVLWNT---------------MISGFSRHAR 317 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g~ 317 (600)
...+..+++.. +.+..++..+...|...|++++|...|+++.+ | +...+.. .+..+...|+
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 66666665554 33455556666666666666666666654432 1 1111110 2333348899
Q ss_pred hHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 007530 318 SVEVMILFEKMQQAGLH-PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLI 396 (600)
Q Consensus 318 ~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (600)
+++|+..|+++.+.... ++..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999885322 147888899999999999999999999987542 335778999999999999999999999
Q ss_pred HcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHHHHHHH
Q 007530 397 LNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-----------AGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 397 ~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+++ ... .+..+|..+...+...|++++|...+++++++.|++ +..+..++.+|...|++++|..+++
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 886 223 457899999999999999999999999999988876 7889999999999999999998875
Q ss_pred H
Q 007530 464 L 464 (600)
Q Consensus 464 ~ 464 (600)
+
T Consensus 355 ~ 355 (368)
T 1fch_A 355 R 355 (368)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-14 Score=157.82 Aligned_cols=382 Identities=12% Similarity=0.063 Sum_probs=299.1
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMG--LNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSY 109 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 109 (600)
|+.-.+..++++...|.+.++.+++++++-.+ +..+....+.|+.+..+. +..+..+..+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 33345667889999999999999999998432 224557777788777766 4455555555554322 55578888
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
...|.+++|..+|++... .....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|
T Consensus 1060 i~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999998521 1222333333 667899998887754 2578899999999999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC
Q 007530 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGS 269 (600)
Q Consensus 190 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 269 (600)
...|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999764 678889999999999999999999998776654 33333345888999999888644442 2 44
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
+...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 5566777999999999999999999985 58999999999999999999999976 366899999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH--cCChHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRN--YRNLELAE 425 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~--~~~~~~a~ 425 (600)
.|++..|......+ ..+...+..++..|.+.|.+++|..+++.. +.+| +...|..|...+.+ .++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998876543 345667889999999999999999999766 4444 35677666666666 46777888
Q ss_pred HHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 007530 426 IAAKQLFGMEP-----DNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 426 ~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
+.|..-..+.| .+...|.-+...|.+.|.|+.|..
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88887777766 677789999999999999999984
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=159.87 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
...|..+...+.+.|++++|+..|+++.+. .|.+..++..+..++...|++++|...+..+++..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------ 129 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP------------ 129 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC------------
Confidence 344555555555555555555555555554 233444455555555555555555555555544432
Q ss_pred HHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHH---------------H
Q 007530 179 VYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQF-TISS---------------V 242 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------l 242 (600)
.+..+|..+...|...|++++|+..|+++.... |+.. .+.. .
T Consensus 130 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 130 --------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CT
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHH
Confidence 234455555555555555555555555555432 2111 1100 1
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCCh
Q 007530 243 ICACAGLAALIQGKQVHAVLCKTGFGS-NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARS 318 (600)
Q Consensus 243 l~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 318 (600)
+..+...|++++|...+..+++..... +..++..+...|.+.|++++|...|+++.+ .+..+|+.+...|...|++
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 222225566666666666665543111 344555555555555555555555554331 2344555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
++|+..|+++.+.. +.+...+..+..++...|++++|...|+.+.
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555431 2234445555555555555555555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=169.97 Aligned_cols=258 Identities=13% Similarity=0.085 Sum_probs=118.9
Q ss_pred HcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 182 KCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 4899999999999999999999965 35777999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYI 341 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 341 (600)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45578889999999999999999888864 77789999999999999999999999976 3788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNL 421 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 421 (600)
.+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.+
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 8999999999999999999877 26779999999999999999997776665544544 44688889999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--CChHHHHHHHHHhhhCCCcc
Q 007530 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN--RRWEEVARARKLIRDSEVKK 472 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~~ 472 (600)
++|..+++..+.+++.....+..|+.+|++- ++..+..+.|. ..-+++|
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k 274 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPK 274 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcH
Confidence 9999999999999998888999998888755 44555555443 2234544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-15 Score=145.19 Aligned_cols=270 Identities=8% Similarity=-0.054 Sum_probs=210.1
Q ss_pred HHHHcCCHHHHHHHHccCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHH
Q 007530 179 VYAKCGLISDASRVFESMPERNE----VTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQ 254 (600)
Q Consensus 179 ~y~~~g~~~~A~~~f~~m~~~d~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 254 (600)
-....|++..|+..++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888877655332 2445567888888888888876644 135566777777788888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007530 255 GKQVHAVLCKTGF-GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGL 333 (600)
Q Consensus 255 a~~~~~~~~~~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 333 (600)
|.+.++.++..+. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|+..|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888887764 44566777788999999999999999998 567889999999999999999999999999986
Q ss_pred CCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 007530 334 HPNEQTY---ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMW 408 (600)
Q Consensus 334 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 408 (600)
.|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|+..+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664321 123344456699999999999998653 457889999999999999999999999986 3344 67889
Q ss_pred HHHHHHHHHcCChHH-HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 007530 409 GSLLASCRNYRNLEL-AEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
..++..+...|+.++ +.+.++++++++|+++. +.+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 999999999999876 67899999999999874 345566666666665443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=159.34 Aligned_cols=261 Identities=10% Similarity=-0.066 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777777777777888887777777653 3356677777777777777888877777777764 445677777788
Q ss_pred HHHhhCCHHHHHHHHhcCCCcC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKN-------------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLH-PNEQTYISVLS 345 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 345 (600)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888877765321 223344577888999999999999999886322 15788999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
.+...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|...|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999997643 346778999999999999999999999887 3334 58899999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 007530 424 AEIAAKQLFGMEPD------------NAGNHLLLSNIYAANRRWEEVARARKL 464 (600)
Q Consensus 424 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 464 (600)
|...+++++++.|+ +...+..++.++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997766 356788999999999999999887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-16 Score=157.82 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=125.6
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALL 177 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (600)
+...|..+...+.+.|++++|+..|+++.+. .|.+..++..+..++...|++++|...++.+++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------- 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP----------- 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------
Confidence 3444666666666666666666666666554 233444555555555555555555555555544422
Q ss_pred HHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN-----------QFTISSVICAC 246 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~a~ 246 (600)
.+..+|..+...|.+.|++++|+..|+++.... |+ ...+..+...+
T Consensus 131 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 131 ---------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------------
T ss_pred ---------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHH
Confidence 234455555555555555555555555554421 21 11223345556
Q ss_pred HccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHH
Q 007530 247 AGLAALIQGKQVHAVLCKTGFG-SNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
...|++++|...+..+++.... .+..++..+...|.+.|++++|...|++.. ..+..+|+.+...|...|++++|+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666776666666665421 145556666666666666666666665543 234556666666666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
..|+++.+.. +.+..++..+..+|...|++++|...|+.+.+
T Consensus 268 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 268 EAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7776666642 22355666666666666777777766666653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-15 Score=155.51 Aligned_cols=385 Identities=11% Similarity=-0.013 Sum_probs=199.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCC-----------C-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHc-----CC
Q 007530 68 TLTSNILINFYSKCGLISGARKVFDEMP-----------Q-RCIVSWNTIIGSYTTNGREQEAVALFINMLRE-----GK 130 (600)
Q Consensus 68 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 130 (600)
...||.|...|...|+.++|++.|++.. . ....+|+.+...|...|++++|...|++..+. +.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4566667677777777777776665432 1 13356666666677777777777666665432 00
Q ss_pred CCC-ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH---HHcCCHHHHHHHHccCC---CCCH
Q 007530 131 TPY-SEFTVSSVLCACAA--KRDVFECKQLHVFALKAAMDRNVFVGTALLDVY---AKCGLISDASRVFESMP---ERNE 201 (600)
Q Consensus 131 ~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~f~~m~---~~d~ 201 (600)
..+ ...++.....++.. .+++++|...|+.+++..+. +...+..+..++ ...++.++|.+.|++.. ..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 12334333333322 34566666666666665432 344444444332 23344445555444332 1234
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 007530 202 VTWSSMVAGFVQ----NELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277 (600)
Q Consensus 202 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (600)
.++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 444444433333 344555666665554432 2334455555556666666666666666665543 3344444445
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 357 (600)
...|...+....+... ..........+..++|+..|++..+.. +.+..++..+...+...|++++|+
T Consensus 288 g~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 4444322111110000 000000111233577888888887753 234456777888899999999999
Q ss_pred HHHHHHHHhcCCCccH--HHHHHHHH-HHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 358 SYFDLMVKQHNVLPNV--FHYSCMID-ILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
..|++..+. ...|.. ..+..+.. .+...|+.++|...|++. .+.|+...+... .+.+..++++.++
T Consensus 355 ~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHH
Confidence 999988743 222221 12223322 234678999999998875 455665433322 3445677888888
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEE
Q 007530 434 MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSW 478 (600)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 478 (600)
.+|+++.++..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999999999999999988766433333444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-13 Score=149.49 Aligned_cols=365 Identities=11% Similarity=0.055 Sum_probs=284.9
Q ss_pred hHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHccCC-CC-----CcchHHHHHHHHHcCCChhHHHHHH
Q 007530 51 RGKVCHAKIIGMGL--NNDTLTSNILINFYSKCGLISGARKVFDEMP-QR-----CIVSWNTIIGSYTTNGREQEAVALF 122 (600)
Q Consensus 51 ~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~ 122 (600)
.=+++.++.+...+ ..|+.--...+..|...|.+.+|.++++++. +| +...-|.++.+..+. +..+..+..
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 34456666555443 2345555777888999999999999999875 22 234566788777777 556666666
Q ss_pred HHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHH
Q 007530 123 INMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEV 202 (600)
Q Consensus 123 ~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~ 202 (600)
.+... .....+...|...|.+++|..+|++.. ......+.++ -..|++++|.++.++.. +..
T Consensus 1045 ~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~ 1106 (1630)
T 1xi4_A 1045 NRLDN--------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPA 1106 (1630)
T ss_pred HHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHH
Confidence 55532 224447788889999999999998852 1222223332 37889999999998774 467
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++..|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 8999999999999999999999663 467788899999999999999999999988865 44444556999999
Q ss_pred hhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 283 KCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
+.+++++..... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++
T Consensus 1179 Kl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1179 KTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred hhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999655443 4567778888999999999999999999985 4899999999999999999999987
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
.. +..+|..+..++...|.+..|......+ ..++..+..++..|...|.+++|..+++..++++|.+...+
T Consensus 1247 A~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1247 AN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred hC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 62 4578888889999999999999887754 34566677899999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CChHHHHHHHH
Q 007530 443 LLLSNIYAAN--RRWEEVARARK 463 (600)
Q Consensus 443 ~~l~~~~~~~--g~~~~a~~~~~ 463 (600)
.-|+.+|++- ++..++.+.|.
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 8888888764 45555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=151.70 Aligned_cols=273 Identities=12% Similarity=0.001 Sum_probs=190.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICAC 246 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 246 (600)
...+..+...+.+.|++++|..+|+++.+ .+..+|..+...+.+.|++++|+..|+++.... +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34455666667777777777777766542 355566666677777777777777777666542 23455566666666
Q ss_pred HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHH--HHHhcCChHHHHHH
Q 007530 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMIS--GFSRHARSVEVMIL 324 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l 324 (600)
...|++++|...+..+.+.. +.+...+..+.... ++......+.. .+...|++++|+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 66666666666666666543 11222221111000 00111111212 26677888999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-
Q 007530 325 FEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD- 402 (600)
Q Consensus 325 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~- 402 (600)
++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99988763 3367788888889999999999999999987542 335678889999999999999999999876 223
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD------------NAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
.+..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|..+++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45788999999999999999999999999998888 6788999999999999999999988644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=145.83 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=202.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQ--FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g 285 (600)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3455678999999999887643 34543 3556678899999999999876544 24667888899999999999
Q ss_pred CHHHHHHHHhcCC----Cc-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 286 CVVDAYFVFSGIE----EK-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 286 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 566777788899999999999999987 457788888999999999999999999
Q ss_pred HHHHHhcCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Q 007530 361 DLMVKQHNVLPNVF---HYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGME 435 (600)
Q Consensus 361 ~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 435 (600)
+.+.+. .|+.. ...+++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999754 35432 2233445555669999999999988 234578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHH-HHHHHHHhhhCC
Q 007530 436 PDNAGNHLLLSNIYAANRRWEE-VARARKLIRDSE 469 (600)
Q Consensus 436 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 469 (600)
|+++.++..++.++...|++++ +.++++++.+.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 568888887644
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-17 Score=174.11 Aligned_cols=151 Identities=7% Similarity=0.027 Sum_probs=126.8
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHccCC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007530 166 MDRNVFVGTALLDVYAKCGLISDASRVFESMP-------ERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFT 238 (600)
Q Consensus 166 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 238 (600)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34345689999999999999999999997753 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCc-----CHhHHHHHHHHH
Q 007530 239 ISSVICACAGLAAL-IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEK-----NVVLWNTMISGF 312 (600)
Q Consensus 239 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 312 (600)
|+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999999988887777777666555431 123333444555
Q ss_pred HhcC
Q 007530 313 SRHA 316 (600)
Q Consensus 313 ~~~g 316 (600)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=149.52 Aligned_cols=385 Identities=11% Similarity=-0.018 Sum_probs=237.5
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhcCChHHHHHHHccCCC----
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGM-----G---LNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---- 96 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 96 (600)
.......|+.+-..+...|+.++|.+.+...++. + .+....+|+.+...|...|++++|...|++..+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3334567888888889999999999999887653 1 123356789999999999999999998876531
Q ss_pred ------C-CcchHHHHHHHHHc--CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH---HhcCCChHHHHHHHHHHHHh
Q 007530 97 ------R-CIVSWNTIIGSYTT--NGREQEAVALFINMLREGKTPYSEFTVSSVLCA---CAAKRDVFECKQLHVFALKA 164 (600)
Q Consensus 97 ------~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~ 164 (600)
+ ...+++.+..++.. .+++++|++.|++..+.. |.+...+..+..+ +...++.++|.+.+..+++.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 23456655555544 457999999999999863 4455555555444 45567888999999999988
Q ss_pred CCCCChhHHHHHHHHHHHc----CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CH
Q 007530 165 AMDRNVFVGTALLDVYAKC----GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY-NQ 236 (600)
Q Consensus 165 g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 236 (600)
.+. +..++..+...+.+. |++++|.+.|++... .+..+|..+...|.+.|++++|+..|++..+. .| +.
T Consensus 205 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 281 (472)
T 4g1t_A 205 NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA 281 (472)
T ss_dssp CSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred CCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH
Confidence 644 566666666555554 677889999987543 46788999999999999999999999998875 34 44
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHH
Q 007530 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFS 313 (600)
Q Consensus 237 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 313 (600)
.++..+...+...+....+ .. ...........+..+.|...|+... ..+..+|..+...|.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 5555555444322111100 00 0001111112233556666666544 235567888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 007530 314 RHARSVEVMILFEKMQQAGLHPNEQ--TYISVLS-ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIH 390 (600)
Q Consensus 314 ~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 390 (600)
..|++++|++.|++..+....|... .+..+.. .....|+.++|+..|.+.++ +.|+........ .
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------D 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------H
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------H
Confidence 9999999999999998864333221 2222222 24577999999999998874 355533322222 2
Q ss_pred HHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 391 EAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 391 ~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
.+.+++++. . .+.+..+|..|...+...|++++|...+++++++.|.+|.+...++
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 233333332 1 1345778999999999999999999999999999998887665544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=174.31 Aligned_cols=133 Identities=8% Similarity=0.063 Sum_probs=120.9
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHccCC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh
Q 007530 64 LNNDTLTSNILINFYSKCGLISGARKVFDEMP-------QRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEF 136 (600)
Q Consensus 64 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~ 136 (600)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.| +.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Confidence 33446789999999999999999999997753 5899999999999999999999999999999999 999999
Q ss_pred hHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 137 TVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 137 t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
||+++|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++.+.+++..+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999999999985 7899999999999999999999999999888877777777766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=142.73 Aligned_cols=262 Identities=12% Similarity=-0.011 Sum_probs=197.9
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHH
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGS 108 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 108 (600)
+...+......+...|+++.|..+++.+++.. +.+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 44456667778888999999999999998875 55778888889999999999999999987643 467788899999
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHHhCCCCChhHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSV--------------LC-ACAAKRDVFECKQLHVFALKAAMDRNVFVG 173 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 173 (600)
+...|++++|++.|+++.+.. +.+...+..+ .. .+...|++++|...+..+++..+. +..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999998863 3344444333 22 366677888888888888887544 67788
Q ss_pred HHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 007530 174 TALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLA 250 (600)
Q Consensus 174 ~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 250 (600)
..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 8888888888888888888887643 356778888888888888888888888877653 335667777777888888
Q ss_pred chHHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHHhhCCHHHHHHHHhcCC
Q 007530 251 ALIQGKQVHAVLCKTGFGS-----------NMFAASSLVDMYAKCGCVVDAYFVFSGIE 298 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 298 (600)
++++|...+..+.+..... +..++..+...|.+.|+.++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888777654221 45666777777777777777777776544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=129.67 Aligned_cols=228 Identities=8% Similarity=-0.018 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC--CCchhHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGF--GSNMFAASSLV 278 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 278 (600)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++... .++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------- 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY------- 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-------
Confidence 3456666677777777777777777766655 5555666666666666666666666665554310 0000
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
......|..+...|...|++++|+..|++.... .|+. ..+...|++++|..
T Consensus 76 --------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 76 --------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHH
Confidence 001456777777888888888888888888874 4553 33556678899999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
.++.+.+. .+.+...+..+...+...|++++|...+++. .. +.+..+|..+...+...|++++|...++++++..|
T Consensus 127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99888642 1235667888888899999999999998876 22 34578899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 437 DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+++..+..++.+|...|++++|...++...+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=130.67 Aligned_cols=233 Identities=11% Similarity=-0.023 Sum_probs=151.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHccCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 007530 170 VFVGTALLDVYAKCGLISDASRVFESMPE--RNEVTWSSMVAGFVQNELYEEALILFRRAQVLG--LEYN----QFTISS 241 (600)
Q Consensus 170 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~ 241 (600)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..... ..|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46788899999999999999999987533 678899999999999999999999999987642 1222 467777
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHH
Q 007530 242 VICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEV 321 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 321 (600)
+...+...|++++|...+..+.+.. |+ ...+.+.|++ ++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~-------------------------------~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNA-------------------------------EKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHH-------------------------------HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHH-------------------------------HHH
Confidence 7788888888888888888887754 22 1233344444 445
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-
Q 007530 322 MILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM- 399 (600)
Q Consensus 322 ~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 399 (600)
+..++++... .| +...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++.
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555544442 22 22344444455555555555555555554322 223445555555555666666665555544
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC------CCCcchHHHHH
Q 007530 400 PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGME------PDNAGNHLLLS 446 (600)
Q Consensus 400 ~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 446 (600)
.. +.+...|..+...+...|++++|...+++++++. |++...+..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 11 2235666667777777777777777777777766 66555444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-13 Score=126.33 Aligned_cols=195 Identities=12% Similarity=-0.006 Sum_probs=151.6
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 268 GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344 (600)
Q Consensus 268 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 344 (600)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888886543 467788888888999999999999999988853 23466778888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHH
Q 007530 345 SACSHI-----------GMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSL 411 (600)
Q Consensus 345 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 411 (600)
..+... |++++|+..++..++. .| +...+..+..+|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999754 34 5678888999999999999999999886 212778899999
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 412 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
...+...|++++|...++++++++|+++..+..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-13 Score=137.86 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=105.6
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHccCCCCCcchHHHHHHHHHcCC--
Q 007530 39 TLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLI---SGARKVFDEMPQRCIVSWNTIIGSYTTNG-- 113 (600)
Q Consensus 39 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 113 (600)
+.....+.|+++.|.+++....+.| ++..+..|-.+|...|+. ++|.+.|+...+.+...+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566788999999999998877 233445566667777877 89999999887777778888888666655
Q ss_pred ---ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC---
Q 007530 114 ---REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVF---ECKQLHVFALKAAMDRNVFVGTALLDVYAKCG--- 184 (600)
Q Consensus 114 ---~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--- 184 (600)
++++|+..|++..+.| . ...+..+...+...+... .+.+.+....+.| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g-~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANG-E---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-C---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 7789999999998877 2 236666666666655433 3444444444444 4556667777777777
Q ss_pred -CHHHHHHHHccCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcC
Q 007530 185 -LISDASRVFESMPERNEVTWSSMVAGFVQNE---LYEEALILFRRAQVLG 231 (600)
Q Consensus 185 -~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g 231 (600)
..+.+..+++.....++.++..|...|.+.| +.++|++.|++..+.|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 4455555666666656667777777777777 7777777777766655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-13 Score=128.93 Aligned_cols=241 Identities=8% Similarity=-0.119 Sum_probs=174.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH
Q 007530 213 QNELYEEALILFRRAQVLGLE--Y-NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD 289 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 289 (600)
..|++++|+..|+++...... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777654211 1 34556666667777777777777777777664 4456677777778888888888
Q ss_pred HHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 007530 290 AYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQ 366 (600)
Q Consensus 290 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 366 (600)
|...|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888776653 35678888888899999999999999999875 455555555555667779999999999887654
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 367 HNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 367 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
. +++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 3 3333334 3667777888889999888876 32232 578889999999999999999999999999997654
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 007530 441 NHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
..+.++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999987765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-13 Score=121.70 Aligned_cols=195 Identities=12% Similarity=-0.049 Sum_probs=127.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007530 97 RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTAL 176 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (600)
++...|..+...+.+.|++++|+..|++.++. -|.+...+..+..++...|++++|...++.+++..+. +...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 45567777777888888888888888888776 3556777777778888888888888888888877543 56677777
Q ss_pred HHHHHHc-----------CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007530 177 LDVYAKC-----------GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSV 242 (600)
Q Consensus 177 i~~y~~~-----------g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 242 (600)
...|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 7777777 777777777766543 245667777777777777777777777776655 556666666
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 243 ICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 243 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
..++...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666777777777777777766654 345555666666666666666666665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-13 Score=126.06 Aligned_cols=254 Identities=10% Similarity=-0.029 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYN--QFTISSVICA 245 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a 245 (600)
.+.......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++....+..|+ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566777777888888877776543 2455677777777778888888888777776332222 2236666677
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHH
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 322 (600)
+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777654 33455666666677777777777776666553 23445555552222334666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGM---VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
+.|+++.+.. +.+...+..+...+...|+ .++|...++.+.+...-.|+.. -.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~---------------------- 218 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD---------------------- 218 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH----------------------
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH----------------------
Confidence 6666665531 1223444444444444444 4445555544433211112110 00
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 400 PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 400 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
....+|..+...+...|++++|...++++++++|+++.....+..+....
T Consensus 219 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 219 ---ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 01245667777888889999999999999999999887776666554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=124.55 Aligned_cols=241 Identities=10% Similarity=-0.076 Sum_probs=160.8
Q ss_pred cCCChhHHHHHHHHHHHcCCC--CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 111 TNGREQEAVALFINMLREGKT--PYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
..|++++|+..|+++.+.... +.+..++..+...+...|++++|...+..+++..+. +..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875311 124566777888888888888888888888887543 67788888888888888888
Q ss_pred HHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 189 ASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 189 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887654 35778888888999999999999999888874 455444444555556678888888888777765
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN-------VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
. +++...+. ++..+...++.++|...+....+.+ ...|..+...|...|++++|+..|++.... .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 4 33333333 5666666667777777776655422 345566666666666666666666666653 3322
Q ss_pred HHHHHHHHHHccCCHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 111123344445555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-12 Score=119.73 Aligned_cols=197 Identities=10% Similarity=-0.077 Sum_probs=151.6
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566666777777777777777776542 356677778888888888888888888887753 33566777788888
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a 424 (600)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888864 23344 5567777888888888888888888776 222 3577888888888888999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999888888888888888888889999999998888887643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-12 Score=117.59 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 5677888888888888888888888877653 2345556666666666666666666666665543 1
Q ss_pred HHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
.+...|..+...|...|++++|+++|+++...+..|+ ...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2344555555566666666666666666655333343 44556666667777777777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 360 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
++.+.+.. +.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.++|...++++++..|+
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 77766432 224566777777777778888887777765 222 35667777777888888888888888888888888
Q ss_pred CcchH
Q 007530 438 NAGNH 442 (600)
Q Consensus 438 ~~~~~ 442 (600)
++...
T Consensus 242 ~~~~~ 246 (252)
T 2ho1_A 242 SLEYQ 246 (252)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 76543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-12 Score=116.16 Aligned_cols=197 Identities=11% Similarity=-0.040 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555666666666666666655432 345566667777777777777777777776642 3355666677777
Q ss_pred HHcc-CCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChH
Q 007530 347 CSHI-GMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLE 422 (600)
Q Consensus 347 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~ 422 (600)
+... |++++|...++.+.+ .+..| +...+..+...+...|++++|.+.++++ ... .+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777764 22333 3556677777777777777777777665 222 34667777777777788888
Q ss_pred HHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 423 LAEIAAKQLFGMEP-DNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 423 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887777 77777777777777888888888777776543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-12 Score=125.55 Aligned_cols=246 Identities=13% Similarity=0.044 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA-LIQGKQVHAVLCKTGFGSNMFAASSLV 278 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 278 (600)
+...|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567778888888888888888888887642 2245667777777888886 888888888888875 55677888888
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH-IGMVE 354 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 354 (600)
..|.+.|++++|+..|+++.+ .+...|..+...+...|++++|+..|+++++.. +-+...|..+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888887763 567888888888999999999999999998863 2356778888888887 56656
Q ss_pred HH-----HHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcC--CHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcC------
Q 007530 355 KG-----KSYFDLMVKQHNVLP-NVFHYSCMIDILGRAG--LIHEAYDLILNMPFDAT-ASMWGSLLASCRNYR------ 419 (600)
Q Consensus 355 ~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~------ 419 (600)
+| +..++..++. .| +...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4778877643 34 5667888888888877 58888888887744454 677788888887763
Q ss_pred ---ChHHHHHHHHHH-hcCCCCCcchHHHHHHHHHh
Q 007530 420 ---NLELAEIAAKQL-FGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 420 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 451 (600)
.+++|..+++++ ++++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888877776643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-12 Score=132.24 Aligned_cols=342 Identities=11% Similarity=-0.005 Sum_probs=190.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV---FECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...+....+. +...+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 4556667788888888888887776 233344444445556666 7777777777654 4455566666454
Q ss_pred HcC-----CHHHHHHHHccCCCC-CHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 182 KCG-----LISDASRVFESMPER-NEVTWSSMVAGFVQNELYEE---ALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 182 ~~g-----~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
..| +.++|.+.|++..++ +...+..|...|...+..++ +.+.+.+....|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 444 667777777765543 44466667777766654333 3444444444332 33444455555555544
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC---CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhc----CChHHHH
Q 007530 253 IQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG---CVVDAYFVFSGIEE---KNVVLWNTMISGFSRH----ARSVEVM 322 (600)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 322 (600)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 443333333333222333446677777777777 77777777776543 3334445555555443 5777788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-----CHHHHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSA-C--SHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG-----LIHEAYD 394 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 394 (600)
..|++.. .| +...+..+... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8777766 33 33344444443 3 456777888888877753 23 4455566666665 44 7778888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhh
Q 007530 395 LILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA----NRRWEEVARARKLIR 466 (600)
Q Consensus 395 ~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 466 (600)
+|++.- ..++..+..|...|.. ..+.++|...++++.+.. ++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 887776 5566666666666655 337777888777776643 45567777777764 347777777777776
Q ss_pred hCC
Q 007530 467 DSE 469 (600)
Q Consensus 467 ~~~ 469 (600)
+.|
T Consensus 386 ~~g 388 (452)
T 3e4b_A 386 AQD 388 (452)
T ss_dssp TTC
T ss_pred HCC
Confidence 665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=116.79 Aligned_cols=225 Identities=12% Similarity=-0.036 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAAS 275 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (600)
+..++..+...|.+.|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666665552 233444445555555 555555555555555543 344444
Q ss_pred HHHHHHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 276 SLVDMYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMISGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 276 ~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44455544 4555555444443322 234444445555555 555555555555555543 33344444444
Q ss_pred HHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-
Q 007530 347 CSH----IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN- 417 (600)
Q Consensus 347 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~- 417 (600)
+.. .+++++|...|+...+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 444 55555565555555432 1 23344444455555 55555555555443111123444444444444
Q ss_pred ---cCChHHHHHHHHHHhcCCCC
Q 007530 418 ---YRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 418 ---~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+++++|...++++.++.|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 45555555555555554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=121.77 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
..+|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3445555566666666666666666655431 2233444444444444444444444444444332
Q ss_pred HHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1234445555555555666666666666655542 234455555566666666666666666
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
+.+.+.. +.+...+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|...++++++++|++
T Consensus 149 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 6665332 224445556666666666666666666554 11 2345566666667777777777777777777777766
Q ss_pred cchHHHHHHH
Q 007530 439 AGNHLLLSNI 448 (600)
Q Consensus 439 ~~~~~~l~~~ 448 (600)
+..+..+..+
T Consensus 227 ~~~~~~~~~l 236 (243)
T 2q7f_A 227 MLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 6555544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=117.26 Aligned_cols=229 Identities=7% Similarity=-0.106 Sum_probs=185.3
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC--CC----HHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE--RN----EVTWSSM 207 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~d----~~~~~~l 207 (600)
|...+......+...|++++|...+..+++..+. +..++..+...|.+.|++++|...|++..+ ++ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3445667788899999999999999999998643 666889999999999999999999987654 22 3358999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhhCC
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLV-DMYAKCGC 286 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~y~~~g~ 286 (600)
...|...|++++|+..|++..... +.+...+..+...+...|++++|...+..+++.. +.+..++..+. ..|. .++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 999999999999999999998753 3356788899999999999999999999998873 55677787787 5554 569
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR---SVEVMILFEKMQQAG-LHPN------EQTYISVLSACSHIGMV 353 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~ 353 (600)
+++|.+.|+++.+ .+...|..+...+...|+ .++|+..+++..+.. -.|+ ...|..+...|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998763 356788888888888888 888999999987742 1243 24677788888889999
Q ss_pred HHHHHHHHHHHHh
Q 007530 354 EKGKSYFDLMVKQ 366 (600)
Q Consensus 354 ~~a~~~~~~~~~~ 366 (600)
++|.+.|+++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=113.39 Aligned_cols=211 Identities=11% Similarity=-0.009 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVD 279 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 279 (600)
+...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 45567777777777777777777777776542 2234455555555566666666666655555432
Q ss_pred HHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 357 (600)
..+...|..+...|... |++++|+..++++.+.+..|+ ...+..+...+...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12344556666666677 777777777777766333343 455666777777777888887
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-D-ATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
..++.+.+.. +.+...+..+...+.+.|++++|.+.+++. .. + .+...+..+...+...|+.+.+...++.+.+.
T Consensus 134 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777776432 224566777777788888888888777765 22 2 35666777777777888888888888888888
Q ss_pred CCCCcchHHHH
Q 007530 435 EPDNAGNHLLL 445 (600)
Q Consensus 435 ~p~~~~~~~~l 445 (600)
.|+++.....+
T Consensus 212 ~p~~~~~~~~l 222 (225)
T 2vq2_A 212 FPYSEELQTVL 222 (225)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHh
Confidence 88877654443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-11 Score=115.31 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----hCCHHHHHHHHhcCCC-cCHhHHHHHH
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAK----CGCVVDAYFVFSGIEE-KNVVLWNTMI 309 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 309 (600)
+..++..+...+...|++++|...+....+. .+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566777888889999999999999999983 356778889999999 9999999999997754 4778899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 310 SGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH----IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 310 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999753 3 5567778888
Q ss_pred HHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--
Q 007530 382 ILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA-- 451 (600)
Q Consensus 382 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 451 (600)
.|.. .+++++|...+++.-...+...+..+...+.. .+++++|...++++++.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999887323467888889999999 9999999999999999876 5688899999999
Q ss_pred --cCChHHHHHHHHHhhhCC
Q 007530 452 --NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 452 --~g~~~~a~~~~~~m~~~~ 469 (600)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-12 Score=129.24 Aligned_cols=195 Identities=10% Similarity=0.010 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHAR--------------------SVEVMI 323 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 323 (600)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555444332 11 2355556666666666 677777
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHH
Q 007530 324 LFEKMQQA----GLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 324 l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 394 (600)
.+++.... +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 76665432 11111 235666777777888888888888777543221122 3367777788888888888888
Q ss_pred HHHcC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHH
Q 007530 395 LILNM----PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 395 ~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 87765 11112 4567778888888899999999888888754332 4577788999999999999999
Q ss_pred HHHHhhh
Q 007530 461 ARKLIRD 467 (600)
Q Consensus 461 ~~~~m~~ 467 (600)
.++...+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=130.29 Aligned_cols=197 Identities=9% Similarity=-0.042 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCC---------cCHhHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE---------KNVVLWNTMISGFSRHAR-----------------SVEVMILF 325 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~l~ 325 (600)
.++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3344444555555555555555444321 123355555666666666 66666666
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHH
Q 007530 326 EKMQQA----GLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYDLI 396 (600)
Q Consensus 326 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 396 (600)
++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 655432 1111 1235666667777778888888777776543211111 235667777788888888887777
Q ss_pred HcC----CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChHHHHHHH
Q 007530 397 LNM----PFDA----TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD------NAGNHLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 397 ~~m----~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~ 462 (600)
++. +... ...++..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 655 1111 1456777888888888899998888888875433 2347788999999999999999999
Q ss_pred HHhhhC
Q 007530 463 KLIRDS 468 (600)
Q Consensus 463 ~~m~~~ 468 (600)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=119.93 Aligned_cols=197 Identities=11% Similarity=0.062 Sum_probs=154.3
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSA 346 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 346 (600)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677778888888888888877643 467788889999999999999999999998863 3467888889999
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELA 424 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a 424 (600)
+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999997643 346778889999999999999999999887 22 34678899999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++++++..|+++..+..++.+|...|++++|...++.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-09 Score=116.73 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=35.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCC---hhHHHHHHHHHHHcCCCCCChhhHH
Q 007530 66 NDTLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGR---EQEAVALFINMLREGKTPYSEFTVS 139 (600)
Q Consensus 66 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~p~~~t~~ 139 (600)
.|...|..++..+.+.+.++.++.+|+.+.. .....|..-+..-.+.|. ++.+..+|++.+.....+|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4455555555555555555555555554432 233344444444444444 5555555555544310124444444
Q ss_pred HHHH
Q 007530 140 SVLC 143 (600)
Q Consensus 140 ~ll~ 143 (600)
.-+.
T Consensus 144 ~Yl~ 147 (679)
T 4e6h_A 144 SYIT 147 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-12 Score=125.33 Aligned_cols=260 Identities=11% Similarity=0.007 Sum_probs=153.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 007530 208 VAGFVQNELYEEALILFRRAQVLGLEYN----QFTISSVICACAGLAALIQGKQVHAVLCKT----GFG-SNMFAASSLV 278 (600)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 278 (600)
...+...|++++|+..|++..... +.+ ...+..+...+...|++++|...+..+++. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444444444444444444331 111 123334444444444444444444443321 111 1233445555
Q ss_pred HHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHAR--------------------SVEVMILFEKMQ 329 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 329 (600)
..|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555666655555554331 11 2355566666666666 677777766654
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHcC-
Q 007530 330 QA----GLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----NVFHYSCMIDILGRAGLIHEAYDLILNM- 399 (600)
Q Consensus 330 ~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m- 399 (600)
.. +..| ...++..+...+...|++++|...++...+...-.+ ....+..+...|...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 123566667777788888888888877654321111 1336777778888888888888887765
Q ss_pred ---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 400 ---PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 400 ---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11112 4567778888888999999999998888754432 3477789999999999999999998876
Q ss_pred hC
Q 007530 467 DS 468 (600)
Q Consensus 467 ~~ 468 (600)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-11 Score=121.50 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC-HHHHHHHHhcCCC---cCHhHHHHHHHHH
Q 007530 237 FTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC-VVDAYFVFSGIEE---KNVVLWNTMISGF 312 (600)
Q Consensus 237 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 312 (600)
..|..+..++...|++++|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778889999999999999999986 5678899999999999997 9999999998864 5778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh-cCCHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR-AGLIHE 391 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 391 (600)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999863 3367789999999999999999999999998643 2367789999999999 666577
Q ss_pred H-----HHHHHcC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---------
Q 007530 392 A-----YDLILNM-PFDA-TASMWGSLLASCRNYR--NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR--------- 453 (600)
Q Consensus 392 A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 453 (600)
| ++.+++. ...| +...|..+...+...| ++++|...+.++ +.+|+++..+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667665 3344 5789999999988887 689999999998 999999999999999999875
Q ss_pred ChHHHHHHHHHh-hhCC
Q 007530 454 RWEEVARARKLI-RDSE 469 (600)
Q Consensus 454 ~~~~a~~~~~~m-~~~~ 469 (600)
..++|.++++.+ .+.+
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-12 Score=126.06 Aligned_cols=291 Identities=10% Similarity=-0.020 Sum_probs=165.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHccCCC---------CCHHHHH
Q 007530 138 VSSVLCACAAKRDVFECKQLHVFALKAAMDRN---VFVGTALLDVYAKCGLISDASRVFESMPE---------RNEVTWS 205 (600)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------~d~~~~~ 205 (600)
+......+...|++++|...++.+++..+... ..++..+...|...|++++|...|++... ....+|.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33344444444445555544444444422110 13444555555555555555555544321 1234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCc--------------------hHHHHHHHH
Q 007530 206 SMVAGFVQNELYEEALILFRRAQVLGL-EYN----QFTISSVICACAGLAA--------------------LIQGKQVHA 260 (600)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~--------------------~~~a~~~~~ 260 (600)
.+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.|...+.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 677777777777777777776654210 011 2345555556666666 555555554
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG-LHPN- 336 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~- 336 (600)
..++. +..... ....+|..+...|...|++++|+..+++..+.. -.++
T Consensus 172 ~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 172 ENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp HHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 44331 111111 112345556666666677777777666655421 0112
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC-
Q 007530 337 ---EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYDLILNM----PFDAT- 404 (600)
Q Consensus 337 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~- 404 (600)
..++..+...+...|++++|...++...+...-.++ ..++..+...|...|++++|...+++. +..++
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 235666677777778888887777776532211111 456677777788888888887777665 11122
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChH
Q 007530 405 ---ASMWGSLLASCRNYRNLELAEIAAKQLFGMEP------DNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 405 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 456 (600)
..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 45777888888889999999999999887432 23456677888887777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-10 Score=117.85 Aligned_cols=404 Identities=9% Similarity=-0.019 Sum_probs=234.0
Q ss_pred CCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHccCCC-----CCcc
Q 007530 29 NATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGL---ISGARKVFDEMPQ-----RCIV 100 (600)
Q Consensus 29 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~~~~-----~~~~ 100 (600)
.+-|..+|..++..+...+.+..++.+++.++.. ++.....|...+..-.+.|. ++.+..+|++... |++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3457788999999999999999999999999976 57788889999999888898 9999999997652 7888
Q ss_pred hHHHHHHHHHcCCCh--------hHHHHHHHHHHHc-CCC-CC-ChhhHHHHHHHHhc---------CCChHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGRE--------QEAVALFINMLRE-GKT-PY-SEFTVSSVLCACAA---------KRDVFECKQLHVF 160 (600)
Q Consensus 101 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~~-~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~ 160 (600)
.|..-+.-..+.++. +...++|+..+.. | . .| +...|...+..... .++++.++.+|..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG-~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA-IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT-TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 899888776665543 2344788776654 5 4 34 34567666665432 2346778888888
Q ss_pred HHHhCCCCChhHHHHHHHHHHH-------------cCCHHHHHHHHcc-------CCC--CC------------------
Q 007530 161 ALKAAMDRNVFVGTALLDVYAK-------------CGLISDASRVFES-------MPE--RN------------------ 200 (600)
Q Consensus 161 ~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~-------m~~--~d------------------ 200 (600)
++......-..+|......-.. ..+++.|...+.+ +.. |.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8853222122344322221111 0112233333332 111 00
Q ss_pred --HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH-HHHHHHHHhCCCCc
Q 007530 201 --EVTWSSMVAGFVQNE-------LYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGK-QVHAVLCKTGFGSN 270 (600)
Q Consensus 201 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~-~~~~~~~~~~~~~~ 270 (600)
...|...+.---.++ ..+.+..+|++.... .+-+...|.....-+...|+.+.|. .++...+.. .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 123444444322222 122344556555543 2234455555555555566666664 677666653 2445
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC-------------c------------CHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-------------K------------NVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
..++-.++...-+.|+++.|.++|+++.+ | ....|-..+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55566666666667777777766665542 1 1124656666555666666777777
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC
Q 007530 326 EKMQQA-GLHPNEQTYISVLSACSH-IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD 402 (600)
Q Consensus 326 ~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 402 (600)
.+..+. +. +....|......-.+ .++.+.|.++|+..++.++ -+...+...++.....|+.+.|..+|++. ...
T Consensus 458 ~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 458 GKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 666654 21 112222221111112 2346667777766665432 23445556666666666677777776654 112
Q ss_pred C----CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 403 A----TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 403 p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
| ....|..++..-..+|+.+.+..+.+++.+..|+++
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 2 235666666666666777777777777766666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=125.98 Aligned_cols=134 Identities=8% Similarity=-0.056 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC----ccHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN----EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVL----PNVF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----p~~~ 374 (600)
+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555556666666666655544210 011 1255566666667777777777766654322111 1144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-------PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 5666777777777777777777654 1111 1346677778888888888888888888876553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-11 Score=106.27 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=127.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMI 380 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 380 (600)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45667777777777888888888888877742 2245667777777888888888888888776432 23455666677
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 458 (600)
..+...+++++|.+.+.+. ... .+...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777888888888887765 222 35678888888888899999999999999999999888899999999999999999
Q ss_pred HHHHHHhhhCC
Q 007530 459 ARARKLIRDSE 469 (600)
Q Consensus 459 ~~~~~~m~~~~ 469 (600)
.+.+++..+.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99988877643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-12 Score=130.99 Aligned_cols=193 Identities=9% Similarity=-0.014 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhhCCH-HHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCV-VDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVL 344 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 344 (600)
.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3455555566666666666 66666666543 235677888888888889999999999988874 57778888888
Q ss_pred HHHHcc---------CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------CCHHHHHHHHHcC-CCCC---
Q 007530 345 SACSHI---------GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA--------GLIHEAYDLILNM-PFDA--- 403 (600)
Q Consensus 345 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p--- 403 (600)
..+... |++++|.+.|+++.+.. +.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 888888 99999999999987543 23567888888888888 8899999999887 3345
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 007530 404 -TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLI 465 (600)
Q Consensus 404 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 465 (600)
+...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+..+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999999999999999999999999999999999999999999999999998765443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=119.87 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN----EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----NVF 374 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 374 (600)
.+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444444555555555555554433200 011 12455555556666666666666665543211111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-------PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5566666666777777776666554 1111 1346667777788888888888888888876654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-10 Score=108.47 Aligned_cols=218 Identities=10% Similarity=0.044 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007530 218 EEALILFRRAQVLGLEYNQFTISSVICACA-------GLAAL-------IQGKQVHAVLCKTGFGSNMFAASSLVDMYAK 283 (600)
Q Consensus 218 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 283 (600)
++|+.+|++..... +-+...|......+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666531 234445555544443 24554 6777777777763224455677777777777
Q ss_pred hCCHHHHHHHHhcCCC--c-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHH
Q 007530 284 CGCVVDAYFVFSGIEE--K-NVV-LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC-SHIGMVEKGKS 358 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 358 (600)
.|++++|.++|++..+ | +.. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776553 2 233 67777777777888888888888877643 22333443333222 23578888888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P---FDA--TASMWGSLLASCRNYRNLELAEIAAKQLF 432 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 432 (600)
+|+..++..+ -+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887765432 25567777777788888888888888765 1 244 35677777777777888888888888888
Q ss_pred cCCCCCc
Q 007530 433 GMEPDNA 439 (600)
Q Consensus 433 ~~~p~~~ 439 (600)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=120.81 Aligned_cols=242 Identities=12% Similarity=0.019 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh------CC
Q 007530 201 EVTWSSMVAGFVQNELYEEALILFRRAQVL-------GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT------GF 267 (600)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~ 267 (600)
..+|..+...|...|++++|+.+|+++... ..+.....+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666777777777777777777776542 11223345555666666667777776666666543 11
Q ss_pred -CCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----------cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 007530 268 -GSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-----------KNVVLWNTMISGFSRHARSVEVMILFEKMQQA---- 331 (600)
Q Consensus 268 -~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 331 (600)
+....++..+...|...|++++|...|++..+ .....|..+...|...|++++|+++|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12344455555666666666666655554321 01233444444555555555555555554432
Q ss_pred --CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 007530 332 --GLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQH------NVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD 402 (600)
Q Consensus 332 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (600)
+..|+ ..++..+...+...|++++|...++.+.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11121 2234444444445555555555554443210 00000000000
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
....+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222223333445556666666666666777777778888888888888888888776653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-10 Score=109.27 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-------cCCCh-------HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACA-------AKRDV-------FECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
++|+.+|++.+.. .|.+...|......+. ..|++ ++|..+++++++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4666677776665 3445555655555543 23554 566666666655211224445556666666
Q ss_pred HcCCHHHHHHHHccCCC--C-CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 182 KCGLISDASRVFESMPE--R-NEV-TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~------------------ 171 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY------------------ 171 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHH------------------
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHH------------------
Confidence 66666666666655433 2 222 55555555555566666666665555432 1122222
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHH-hhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYA-KCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAG- 332 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~-~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 332 (600)
........ ..|+.++|.++|++..+ .+...|..++..+.+.|+.++|..+|++.....
T Consensus 172 -----------------~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 172 -----------------VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp -----------------HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred -----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 22222211 13555555555554432 245666666666777777777777777777652
Q ss_pred CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 007530 333 LHP--NEQTYISVLSACSHIGMVEKGKSYFDLMVKQH 367 (600)
Q Consensus 333 ~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 367 (600)
+.| ....|..++......|+.+.|..+++.+.+..
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 344 34556666666677777777777777776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=103.59 Aligned_cols=168 Identities=11% Similarity=-0.012 Sum_probs=138.4
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLS 345 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 345 (600)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788888888888888888888887653 467788888899999999999999999988753 335666777778
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
.+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999999887543 335678888999999999999999999876 3334 57899999999999999999
Q ss_pred HHHHHHHHhcCCCCCc
Q 007530 424 AEIAAKQLFGMEPDNA 439 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~ 439 (600)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=115.69 Aligned_cols=158 Identities=10% Similarity=0.022 Sum_probs=77.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CC----CchhHHH
Q 007530 207 MVAGFVQNELYEEALILFRRAQVLG-LEYN----QFTISSVICACAGLAALIQGKQVHAVLCKTG--FG----SNMFAAS 275 (600)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~----~~~~~~~ 275 (600)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+...++.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3444556666666666666655420 0111 2344555555556666666666655554421 00 0123344
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 007530 276 SLVDMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHARSVEVMILFEKMQQA----GLHP-NEQTYI 341 (600)
Q Consensus 276 ~l~~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 341 (600)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 445555555555555555443321 01 124455555555555555555555555441 1212 233455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555566666655555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=114.30 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=122.9
Q ss_pred HhccCCchhHHHHHHHHHHh--CC--CCchhHHHHHHHHH--HhcCChHHHH-----------HHHccCCC-C-Ccc---
Q 007530 43 CARERAPVRGKVCHAKIIGM--GL--NNDTLTSNILINFY--SKCGLISGAR-----------KVFDEMPQ-R-CIV--- 100 (600)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y--~~~g~~~~A~-----------~~~~~~~~-~-~~~--- 100 (600)
+.+.++++.|..+.+.+.+. .. .++...|-.++..- .-.+.++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34678899999999888664 22 23333334443221 1112222333 44444321 1 111
Q ss_pred ---hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCC----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----
Q 007530 101 ---SWNTIIGSYTTNGREQEAVALFINMLREGKTPY----SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR----- 168 (600)
Q Consensus 101 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----- 168 (600)
.|......+...|++++|+..|++..+.-.-.+ ...++..+...+...|+.+.|...+..+++.....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112244556778888888888888776410112 23466777777778888888888777776642111
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-C
Q 007530 169 -NVFVGTALLDVYAKCGLISDASRVFESMPE-----RN----EVTWSSMVAGFVQNELYEEALILFRRAQVL----GL-E 233 (600)
Q Consensus 169 -~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 233 (600)
...+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++.... +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 123566666777777777777666655432 11 135566666666666666666666665541 22 2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
....++..+...+...|++++|...+...++
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234455555555556666666655555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-10 Score=124.27 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=138.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSC 378 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 378 (600)
+..+|+.+...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.|++.++. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4567888888888888888888888888874 454 677888888888999999999999888753 34 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 379 MIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888999999999999988876 3345 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 007530 457 EVARARKLIRD 467 (600)
Q Consensus 457 ~a~~~~~~m~~ 467 (600)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-10 Score=99.88 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444555555566666666666655543 234445555555555555555555555554431 223344444444444
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007530 349 HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAA 428 (600)
Q Consensus 349 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 428 (600)
..|++++|.+.++.+.+. .+.+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555555544444322 1234555666666666677777777777
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+++++..|+++..+..++.+|...|++++|...++...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-09 Score=103.66 Aligned_cols=258 Identities=12% Similarity=-0.016 Sum_probs=157.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHhC--C-CC--chhHHHHHHHH
Q 007530 210 GFVQNELYEEALILFRRAQVLGLEYNQF----TISSVICACAGLAALIQGKQVHAVLCKTG--F-GS--NMFAASSLVDM 280 (600)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~ 280 (600)
.+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+.. . .+ ...+...+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666655554432111111 23333444555566666666555554421 0 00 11234455666
Q ss_pred HHhhCCHHHHHHHHhcCCC----------c-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEE----------K-NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLH--P--NEQTYISVLS 345 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~ 345 (600)
|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 6667777777666654431 1 1234555667778888888888888887664221 1 2346667777
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHH-----HHHHHHHhcCCHHHHHHHHHcCC-CCCC-----HHHHHHHHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS-----CMIDILGRAGLIHEAYDLILNMP-FDAT-----ASMWGSLLAS 414 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~ 414 (600)
.+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 78888999999988888754321111111111 23345778899999999988762 1121 3356677788
Q ss_pred HHHcCChHHHHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPD------NAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+...|++++|...++++++..+. ....+..++.+|...|+.++|...++...+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88899999999999988764322 123667788899999999999999887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-10 Score=102.37 Aligned_cols=151 Identities=11% Similarity=-0.023 Sum_probs=78.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMI 380 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 380 (600)
+..|......+...|++++|+..|++..+....++...+..+..++...|++++|+..++...+. .| +...+..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHH
Confidence 34444445555555555555555555555432244444444555555555555555555555422 22 334455555
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CH-------HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFDA-TA-------SMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIY 449 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~p-~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 449 (600)
..|...|++++|.+.+++. ...| +. ..|..+...+...|++++|...++++++++|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555555544 1112 22 33455555555556666666666666666665 555555666665
Q ss_pred HhcCCh
Q 007530 450 AANRRW 455 (600)
Q Consensus 450 ~~~g~~ 455 (600)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-10 Score=116.54 Aligned_cols=210 Identities=13% Similarity=-0.012 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 007530 115 EQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDV-FECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193 (600)
Q Consensus 115 ~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 193 (600)
+++++..+++.... .+.+...+..+..++...|++ ++|...+..+++..+. +..++..+...|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55667777765554 345667777777788888888 8888888887776533 4566666666666666666666666
Q ss_pred ccCCC--CCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 007530 194 ESMPE--RNEVTWSSMVAGFVQN---------ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVL 262 (600)
Q Consensus 194 ~~m~~--~d~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 262 (600)
++..+ |+...|..+...|.+. |++++|+..|++..+.
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 208 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------------------------------- 208 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------------------------------
Confidence 65433 4445555555555555 5555555555555543
Q ss_pred HHhCCCCchhHHHHHHHHHHhh--------CCHHHHHHHHhcCCC------cCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007530 263 CKTGFGSNMFAASSLVDMYAKC--------GCVVDAYFVFSGIEE------KNVVLWNTMISGFSRHARSVEVMILFEKM 328 (600)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~y~~~--------g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m 328 (600)
. +.+...+..+...|... |++++|...|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 209 ---~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 209 ---D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ---C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 22333444444444444 455555555554431 35667777888888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 329 QQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 329 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+.. +-+...+..+..++...|++++|.+.+..+.
T Consensus 285 l~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 285 AALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7752 2345567777888888888888888777663
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=9e-11 Score=114.14 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHc-------CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC------
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLRE-------GKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAA------ 165 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 165 (600)
..+|..+...+...|++++|+.+|+++.+. . .+....++..+...+...|++++|...+..+++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456777888888888888888888887763 1 23344556666677777777777777777666541
Q ss_pred C-CCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007530 166 M-DRNVFVGTALLDVYAKCGLISDASRVFESMPE-----------RNEVTWSSMVAGFVQNELYEEALILFRRAQ 228 (600)
Q Consensus 166 ~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (600)
- +....++..+...|...|++++|.+.|++..+ ....+|..+...|...|++++|++.|++..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11234455555566666666666655554321 012334444555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=96.14 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHH
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGF 312 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 312 (600)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677888899999999999999887654 45678899999999999999999999998753 4678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 4467778888888888999999999988886432 22334444444445445544444
Q ss_pred HHHHHc
Q 007530 393 YDLILN 398 (600)
Q Consensus 393 ~~~~~~ 398 (600)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=101.39 Aligned_cols=204 Identities=9% Similarity=-0.009 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMIS 310 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 310 (600)
.|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356778888888899999999999999999887446777777789999999999999999987653 35678888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc---HHHHHHH
Q 007530 311 GFSRHARSVEVMILFEKMQQAGLHPN-E-------QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN---VFHYSCM 379 (600)
Q Consensus 311 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 379 (600)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|+..|+.+++ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999998875 343 3 4567777788889999999999998863 3554 5667777
Q ss_pred HHHHHhcCCH--HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 380 IDILGRAGLI--HEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 380 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
...|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|+++.....+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777666543 222222 1 12334443333 33456689999999999999999987777766554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-10 Score=112.73 Aligned_cols=163 Identities=8% Similarity=-0.013 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhc---CCCccHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQA----GLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQH---NVLPNVF 374 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~ 374 (600)
.+++.+...|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..+.. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 34555555666666666666666655442 1111 12345556666666677777777666665310 1122345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC----CC--CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHhcCCCCCcchHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM----PF--DAT-ASMWGSLLASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++. ...|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 5666666677777777776666654 11 122 2233444444444555 55555555552 122333445667
Q ss_pred HHHHHHhcCChHHHHHHHHHhh
Q 007530 445 LSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
++..|...|++++|...++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888877664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-08 Score=101.59 Aligned_cols=226 Identities=10% Similarity=-0.018 Sum_probs=146.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHhC--C---C-CchhHHHHH
Q 007530 209 AGFVQNELYEEALILFRRAQVLG-LEYN----QFTISSVICACAGLAALIQGKQVHAVLCKTG--F---G-SNMFAASSL 277 (600)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~---~-~~~~~~~~l 277 (600)
..+...|++++|+..|++....- -.++ ..++..+...+...|+++.|...+..+.+.. . . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34455666666666666654321 0111 2344455555666666666666666555421 0 1 123455666
Q ss_pred HHHHHhhCCHHHHHHHHhcCCC-----c----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEE-----K----NVVLWNTMISGFSRHARSVEVMILFEKMQQA----GLHPNEQTYISVL 344 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 344 (600)
...|...|++++|.+.|++..+ + ...+++.+...|...|++++|+..|++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 6777777777777766665432 1 1346777778888888888888888887761 2222356777888
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCC---HHHHHHHHHcCCCCCC-HHHHHHHHHHHHH
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNV---LPNVFHYSCMIDILGRAGL---IHEAYDLILNMPFDAT-ASMWGSLLASCRN 417 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~ 417 (600)
..+.+.|++++|...+++..+...- +.....+..+...|...|+ +++|..++++.+..|+ ...+..+...+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 8888999999999999888754322 2223456666667777788 8889998888754444 3466678888889
Q ss_pred cCChHHHHHHHHHHhcC
Q 007530 418 YRNLELAEIAAKQLFGM 434 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~ 434 (600)
.|++++|...++++++.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999888753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-08 Score=100.10 Aligned_cols=256 Identities=11% Similarity=-0.020 Sum_probs=130.6
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCC-hh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CC----hhHHHHH
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYS-EF----TVSSVLCACAAKRDVFECKQLHVFALKAAMD-RN----VFVGTAL 176 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~-~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 176 (600)
..+...|++++|...+++..... +++ .. ++..+...+...|+++.|...+.+.++.... .+ ..+++.+
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455666777777666666542 222 11 2344445555566666666666665543211 11 1224455
Q ss_pred HHHHHHcCCHHHHHHHHccCCC-------C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 007530 177 LDVYAKCGLISDASRVFESMPE-------R----NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLE--Y--NQFTISS 241 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 241 (600)
...|...|++++|...+++..+ + ...++..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5666666666666666554321 1 1234455566666777777777777666543211 1 1234555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCc-hhHHH-----HHHHHHHhhCCHHHHHHHHhcCCCcC-------HhHHHHH
Q 007530 242 VICACAGLAALIQGKQVHAVLCKTGFGSN-MFAAS-----SLVDMYAKCGCVVDAYFVFSGIEEKN-------VVLWNTM 308 (600)
Q Consensus 242 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~l 308 (600)
+...+...|++++|...+.......-.++ ...+. ..+..+...|++++|...+++...++ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55566666777777666666654311111 01111 22333556666666666666554321 1234455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 309 ISGFSRHARSVEVMILFEKMQQA----GLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 309 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55566666666666666655432 111111 133344445555566666665555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-09 Score=101.83 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=23.2
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 435 EPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.|..+..+..++.+|...|++++|...+++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455677778888888888888887776653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.6e-09 Score=100.27 Aligned_cols=217 Identities=8% Similarity=-0.059 Sum_probs=122.7
Q ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 007530 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL----GLEYN-QFTISSVICACAGLAALIQGKQVH 259 (600)
Q Consensus 185 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 259 (600)
++++|...|++ ....|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47777776554 366777888888888888776542 21111 345556666666666666666666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC-
Q 007530 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRH-ARSVEVMILFEKMQQAGLH-PN- 336 (600)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~- 336 (600)
...++. +.+.|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 555442 1112222111 23455666666664 7777777777766552100 01
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHH-
Q 007530 337 ---EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNV-----FHYSCMIDILGRAGLIHEAYDLILNM-PFDATAS- 406 (600)
Q Consensus 337 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 406 (600)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2356666777777777777777777776432111111 14555666677777777777777765 3333321
Q ss_pred -----HHHHHHHHHH--HcCChHHHHHHHHHHhcCCCCC
Q 007530 407 -----MWGSLLASCR--NYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 407 -----~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.+..++.++. ..+++++|...++++.+++|..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2334445543 2456777777777776666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=94.62 Aligned_cols=205 Identities=11% Similarity=0.021 Sum_probs=120.8
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 007530 270 NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K-N---VVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN-EQTYI 341 (600)
Q Consensus 270 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 341 (600)
+...+-.+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555555666666666666655543 1 2 34455555556666666666666666555311 111 23344
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007530 342 SVLSACSH--------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLA 413 (600)
Q Consensus 342 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 413 (600)
.+..++.. .|++++|...|+.+++.+.-.+. ...++.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 44444544 55666666666655543321111 111111000000000 112456778
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCccCCceEEEE
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSNIYAAN----------RRWEEVARARKLIRDSEVKKEKSKSWVE 480 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 480 (600)
.+...|+++.|...++++++..|++ +..+..++.+|... |++++|...++.+.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------- 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----------
Confidence 8899999999999999999998884 44788899999877 99999999999987654
Q ss_pred EcCcccCcchHHHHHHHHHHHHHHHH
Q 007530 481 IKGKRNHPRIAEIYSKLEKLVEEMKK 506 (600)
Q Consensus 481 i~~~~~~~~~~~~~~~l~~l~~~m~~ 506 (600)
..++...++...+.++..++.+
T Consensus 226 ----p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ----PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHHHHHHH
Confidence 2345667777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.6e-09 Score=110.99 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 007530 68 TLTSNILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCA 144 (600)
Q Consensus 68 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~ 144 (600)
...++.|-..|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++.. |-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 44555555555555555555555554331 234455555555555555555555555555542 3334455555555
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHH
Q 007530 145 CAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEAL 221 (600)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~ 221 (600)
+...|++++|.+.++++++..+. +...++.+..+|.+.|++++|++.|++..+ .+...|..+...|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555554322 344455555555555555555555544332 23444444555555555555555
Q ss_pred HHHHHH
Q 007530 222 ILFRRA 227 (600)
Q Consensus 222 ~~~~~m 227 (600)
+.+++.
T Consensus 166 ~~~~ka 171 (723)
T 4gyw_A 166 ERMKKL 171 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.7e-09 Score=99.09 Aligned_cols=201 Identities=10% Similarity=-0.046 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-------c--CHhHHHHHHHHHHhcCChHHH
Q 007530 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-------K--NVVLWNTMISGFSRHARSVEV 321 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 321 (600)
++++|...+..+ ...|...|++++|...|.+..+ + ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3457778888888888776542 1 146788899999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHH
Q 007530 322 MILFEKMQQAGL---HPN--EQTYISVLSACSHI-GMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 322 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 391 (600)
+..|++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988766311 111 35788888899996 9999999999998753211111 3568889999999999999
Q ss_pred HHHHHHcC-CCCC---CH-----HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch-----HHHHHHHHH--hcCCh
Q 007530 392 AYDLILNM-PFDA---TA-----SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN-----HLLLSNIYA--ANRRW 455 (600)
Q Consensus 392 A~~~~~~m-~~~p---~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 455 (600)
|...|++. ...| .. ..|..+..++...|+++.|...+++.++++|+.+.. +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876 2222 21 257778888899999999999999999999976543 334566664 55778
Q ss_pred HHHHHHHHHhh
Q 007530 456 EEVARARKLIR 466 (600)
Q Consensus 456 ~~a~~~~~~m~ 466 (600)
++|...++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888875553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-07 Score=90.36 Aligned_cols=237 Identities=9% Similarity=-0.003 Sum_probs=147.5
Q ss_pred HcCCHHHHHHHHccCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 007530 182 KCGLISDASRVFESMPER-NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHA 260 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 260 (600)
-.|.+..++.-...+... +...-.-+.++|...|++... ..-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 346666666544444322 222233344666666665531 01123322222222 222222 455555
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007530 261 VLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-----KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP 335 (600)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 335 (600)
..+..+ .++......+...|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 555544 34444445777788888888888888877632 24567777788888999999999999998774 66
Q ss_pred -----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC----
Q 007530 336 -----NEQTYISVLSAC--SH--IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF---- 401 (600)
Q Consensus 336 -----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---- 401 (600)
+..+...+..++ .. .+++.+|..+|+++.+. .|+......+..++.+.|++++|++.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 356666666552 22 33889999999998643 344333334444788899999999888754 11
Q ss_pred -------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 402 -------DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 402 -------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+.|+.+...++......|+ .|.++++++.+..|++|.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2346666667666666776 889999999999999874
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=96.74 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHh------CC-CCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---------
Q 007530 135 EFTVSSVLCACAAKRDVFECKQLHVFALKA------AM-DRNVFVGTALLDVYAKCGLISDASRVFESMPE--------- 198 (600)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------- 198 (600)
..++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++..+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555566666666655555543 11 11233455555666666666666655554321
Q ss_pred -C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 199 -R-NEVTWSSMVAGFVQNELYEEALILFRRAQVL------GLEY-NQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 199 -~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
+ ...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 2345566666666667777776666666543 1122 234555666666666777777666666655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-06 Score=88.55 Aligned_cols=219 Identities=12% Similarity=0.006 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchh
Q 007530 200 NEVTWSSMVAGFVQNEL-------YEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMF 272 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 272 (600)
+...|...+.--..++. .+.+..+|+++.... +-+...|...+.-+...|+.+.|..++...++. +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 34466655554332211 345667888877642 344666666667777788888888888888887 44443
Q ss_pred HHHHHHHHHHhhCCHHHH-HHHHhcCC------------CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 007530 273 AASSLVDMYAKCGCVVDA-YFVFSGIE------------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQT 339 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 339 (600)
.+.. |+.....++. ..+.+... ......|-..+..+.+.+..+.|..+|++. .. ..++...
T Consensus 248 l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 3332 2222111111 01111100 001234444454444555566666666655 21 1112222
Q ss_pred HHH--HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 340 YIS--VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
|.. .+... ..++.+.|..+|+...+.++-. ...+...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 322 ~i~~A~lE~~-~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 322 FIYCAFIEYY-ATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHH-HHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 221 11111 1224566666666655443222 2234445555555566666666666552 234455555554445
Q ss_pred cCChHHHHHHHHHHh
Q 007530 418 YRNLELAEIAAKQLF 432 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~ 432 (600)
+|+.+.+..++++..
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.5e-08 Score=92.56 Aligned_cols=200 Identities=9% Similarity=-0.037 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c----CHhH
Q 007530 234 YNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSN---MFAASSLVDMYAKCGCVVDAYFVFSGIEE--K----NVVL 304 (600)
Q Consensus 234 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 304 (600)
.+...+-.....+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667777888899999999999999999864 223 67788899999999999999999998764 2 2456
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 007530 305 WNTMISGFSR--------HARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 305 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
+..+..++.. .|++++|+..|++..+. .|+. ..... ...+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3442 11111 1111111100 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHc----------CChHHHHHHHHHHhcCCCCCcc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM----PFDA-TASMWGSLLASCRNY----------RNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
+..+...|.+.|++++|...|+++ |..+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 445667778888888888888765 3222 245666777777655 8889999999999999998764
Q ss_pred h---HHHHHHHHHhcCCh
Q 007530 441 N---HLLLSNIYAANRRW 455 (600)
Q Consensus 441 ~---~~~l~~~~~~~g~~ 455 (600)
. ...+..++...+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 231 LRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3 33444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-07 Score=88.10 Aligned_cols=239 Identities=5% Similarity=-0.113 Sum_probs=163.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHH
Q 007530 209 AGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVV 288 (600)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 288 (600)
+-..-.|.+..++.-..++. ...+.....-+.+++...|++..+ ..-.|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc---
Confidence 34455788888887333221 122223444456777777776532 11123332333333 333333
Q ss_pred HHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 289 DAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 289 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
|...|++.. .++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777654 2456666788888999999999999999987655322 45567778889999999999999999996
Q ss_pred HhcCCCc-----cHHHHHHHHHH--HHh--cCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Q 007530 365 KQHNVLP-----NVFHYSCMIDI--LGR--AGLIHEAYDLILNM-PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGM 434 (600)
Q Consensus 365 ~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 434 (600)
+. .| +..+...|..+ ... .++.++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 56 34555555555 333 34999999999998 33455334444555888899999999999988875
Q ss_pred ----------CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 435 ----------EPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 435 ----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58888888777777777887 8889999888654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-08 Score=80.88 Aligned_cols=129 Identities=12% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 383 (600)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence 45555566666666666666666665542 2234455555555555566666666655554321
Q ss_pred HhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 007530 384 GRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 463 (600)
+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344455555555556666666666666666666666666666666666677777766666
Q ss_pred Hhhh
Q 007530 464 LIRD 467 (600)
Q Consensus 464 ~m~~ 467 (600)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.3e-08 Score=79.70 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007530 273 AASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH 349 (600)
Q Consensus 273 ~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 349 (600)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|..+|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998753 467889999999999999999999999998864 3456778888888999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
.|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999887532 224555666666666666666666666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-07 Score=86.25 Aligned_cols=180 Identities=9% Similarity=0.004 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 007530 272 FAASSLVDMYAKCGCVVDAYFVFSGIEE--KN----VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNE----QTYI 341 (600)
Q Consensus 272 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 341 (600)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444456667777777777777776653 22 245666667777777777777777777664 2321 1233
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 007530 342 SVLSACSH------------------IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA 403 (600)
Q Consensus 342 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 403 (600)
.+..++.. .|+.++|...|+.+++.++-.+. .+.+... .+......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~----l~~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKR----LVFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHH----HHHHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHH----HHHHHHHH----------
Confidence 33333332 34556666666655533211111 1111100 00000000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA---GNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456677889999999999999999999875 4688999999999999999999998887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6e-09 Score=89.40 Aligned_cols=138 Identities=4% Similarity=-0.085 Sum_probs=92.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
...|+.++|++.+++.... .|+ ...+..+...|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHH
Confidence 3445566666666655432 222 2344456666667777777777777665432 2245566677777777777777
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHH-HHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 392 AYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIA-AKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 392 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
|...|++. .+.| +...|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777665 3334 467788888888888888766554 588999999999998888888877774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=108.34 Aligned_cols=169 Identities=8% Similarity=-0.079 Sum_probs=123.0
Q ss_pred HhhCCHHHHHHHHhcCC-----------CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 282 AKCGCVVDAYFVFSGIE-----------EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 350 (600)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777877777654 2355677777778888888888888888887742 22456777777778888
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAA 428 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 428 (600)
|++++|.+.|+++.+.. +-+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888876542 2245677778888888888888 7777765 2233 4677888888888888888888888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 429 KQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 429 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
+++++++|++...+..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888766555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.9e-08 Score=91.64 Aligned_cols=174 Identities=9% Similarity=-0.037 Sum_probs=132.5
Q ss_pred HHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 289 DAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 289 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
...+.+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 33444444444455667777788888999999999999988852 235667788888899999999999999988633
Q ss_pred CCccHHHHHHHH-HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC--cchHH
Q 007530 369 VLPNVFHYSCMI-DILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN--AGNHL 443 (600)
Q Consensus 369 ~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 443 (600)
.|+........ ..+.+.++.++|...+++. ... .+...+..+...+...|++++|...+.++++.+|++ +..+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 45544333222 2356677777788777765 223 457889999999999999999999999999999987 77899
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh
Q 007530 444 LLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 444 ~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988876643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=84.66 Aligned_cols=122 Identities=11% Similarity=-0.057 Sum_probs=100.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC
Q 007530 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYR 419 (600)
Q Consensus 343 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 419 (600)
|...+...|++++|+..+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445567789999999998875 33453 445567889999999999999999987 3344 6889999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH-HHHhhh
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA-RKLIRD 467 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 467 (600)
++++|...++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-07 Score=87.26 Aligned_cols=221 Identities=10% Similarity=-0.048 Sum_probs=149.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 007530 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 292 (600)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577888999888776531 111 0 11135666666665543 345677788887777
Q ss_pred HHhcCCCc---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCCHHHHHH
Q 007530 293 VFSGIEEK---------NVVLWNTMISGFSRHARSVEVMILFEKMQQAG---LHPN--EQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 293 ~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
.|.+..+- -..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77655421 13577888888899999999999998876531 1122 3567778888888 99999999
Q ss_pred HHHHHHHhcCCC---c-cHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCChHHHHH
Q 007530 359 YFDLMVKQHNVL---P-NVFHYSCMIDILGRAGLIHEAYDLILNM----PFDAT----ASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 359 ~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
.|++.++...-. + ...++..+...|.+.|++++|...|++. +..++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999886532111 1 1457888899999999999999999876 11122 2356667777778899999999
Q ss_pred HHHHHhcCCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 007530 427 AAKQLFGMEPDNAGN-----HLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 427 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 461 (600)
.+++++ ++|..... ...++.+| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99875433 33445545 56676665553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.9e-07 Score=80.65 Aligned_cols=161 Identities=6% Similarity=-0.073 Sum_probs=120.3
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHHhcCCCccHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG----MVEKGKSYFDLMVKQHNVLPNVFH 375 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 375 (600)
.+..++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|+...+ .| +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHH
Confidence 355666666677777778888888888877765 45566666666666 5 78888888888753 22 4556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHcCC-CCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 376 YSCMIDILGR----AGLIHEAYDLILNMP-FDAT---ASMWGSLLASCRN----YRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 376 ~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
+..|..+|.. .+++++|.++|++.- ..|. +..+..|...+.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6667777766 778888888888763 2332 6788888888887 78899999999999988 55677888
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHhhhCC
Q 007530 444 LLSNIYAAN-R-----RWEEVARARKLIRDSE 469 (600)
Q Consensus 444 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 469 (600)
.|+.+|... | ++++|...++...+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999765 3 8999999999888766
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.2e-08 Score=81.98 Aligned_cols=102 Identities=10% Similarity=0.004 Sum_probs=86.7
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 368 NVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 368 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
.+.| +...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3345 4556777788888999999999998876 223 468889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++.+|...|++++|...++...+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999998887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-07 Score=98.08 Aligned_cols=189 Identities=11% Similarity=0.004 Sum_probs=144.8
Q ss_pred HccCchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhc
Q 007530 247 AGLAALIQGKQVHAVLC--------KTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRH 315 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 315 (600)
...|++++|...+..++ +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 32 245667788888889999999999999987764 4678899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYD 394 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (600)
|++++|++.|++..+. .| +...+..+..++...|++++ ++.|+++++.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 34 46778888889999999999 99999987542 2356788899999999999999999
Q ss_pred HHHcC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHhcCCCCCcch
Q 007530 395 LILNM-PFDAT-ASMWGSLLASCRNYRN-----LELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 395 ~~~~m-~~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99987 56676 5677777777766554 344555555555565555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=99.38 Aligned_cols=160 Identities=8% Similarity=-0.027 Sum_probs=124.1
Q ss_pred hCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 284 CGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 284 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998764 357889999999999999999999999998852 335778888999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHhcCC
Q 007530 361 DLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNY---RNLELAEIAAKQLFGME 435 (600)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 435 (600)
++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9997643 335778899999999999999999999886 2334 578899999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 007530 436 PDNAGNHLLLS 446 (600)
Q Consensus 436 p~~~~~~~~l~ 446 (600)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887766
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-07 Score=81.61 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN--AGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 47788888888888899999999999999988864 4588889999999999999988887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=80.74 Aligned_cols=102 Identities=10% Similarity=-0.039 Sum_probs=88.1
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 368 NVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 368 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4455 4556777778888899999999998877 3334 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++.+|...|++++|...++...+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-06 Score=88.21 Aligned_cols=193 Identities=5% Similarity=-0.107 Sum_probs=113.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC--------C---
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHN--------V--- 369 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~--- 369 (600)
+...|-..+.-+.+.|+.++|..++++.... |+...+.. +|......++ +++.+.+.+- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcc
Confidence 4566777777777778888888888887776 44332221 1221111111 1222221110 0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCC-CCHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNMPFD-ATASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
......|...+..+.+.|..+.|..+|++...+ .+..+|......-.. .++.+.|..+++.+++..|+++..+...++
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 112345667777777788899999999887211 234455433322222 346999999999999877887777777788
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEc-CcccCcchHHHHHHHHHHHHHHHHCC
Q 007530 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIK-GKRNHPRIAEIYSKLEKLVEEMKKLG 508 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~l~~~m~~~g 508 (600)
...+.|+.+.|+.+++...+ ....|.... --..+|..+.+.+.+++....++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 78888999999999988621 011121111 11556777666666666666665443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=83.39 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cCHhHHHHH-HHH
Q 007530 235 NQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KNVVLWNTM-ISG 311 (600)
Q Consensus 235 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~ 311 (600)
+...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|...|+++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445556666667777777777777777664 44667777888888899999999999988874 443332222 233
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
+.+.++.++|+..+++..... +.+...+..+...+...|++++|...|..+++...-..+...+..+...|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 666777888888888887752 3356677788888888889999998888887653222235677777777877787777
Q ss_pred HHHHHHc
Q 007530 392 AYDLILN 398 (600)
Q Consensus 392 A~~~~~~ 398 (600)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-07 Score=80.14 Aligned_cols=129 Identities=11% Similarity=-0.020 Sum_probs=55.9
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGM 352 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 352 (600)
+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 44445555555555555544431 23445555555555555555555555555553 22 23444444444433322
Q ss_pred --HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 007530 353 --VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGS 410 (600)
Q Consensus 353 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 410 (600)
.+.+...+.... ...|....+..+..++...|++++|...|++. ...|+......
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 222333333321 11122112222333344455555555555543 34455443333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-07 Score=96.17 Aligned_cols=147 Identities=9% Similarity=-0.040 Sum_probs=102.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHH
Q 007530 249 LAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILF 325 (600)
Q Consensus 249 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 325 (600)
.|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887754 44677888888888899999999988887653 45678888888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHcC
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA---GLIHEAYDLILNM 399 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 399 (600)
++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888752 3356778888888888999999999998887542 23566778888888888 8889888888776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=77.10 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+......|.+.|++++|.+.|++. ... .+...|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3344444455555555555555443 112 23455555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHhhh
Q 007530 453 RRWEEVARARKLIRD 467 (600)
Q Consensus 453 g~~~~a~~~~~~m~~ 467 (600)
|++++|.+.++...+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-07 Score=80.82 Aligned_cols=129 Identities=7% Similarity=-0.022 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 007530 306 NTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR 385 (600)
Q Consensus 306 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 385 (600)
+.+...|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|+++++.. +.+...+..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 447888999999999999999998853 2356788888899999999999999999997543 2356778888888766
Q ss_pred cCC--HHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 386 AGL--IHEAYDLILNMPFDATA--SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 386 ~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 553 455666676663 3443 345555666777899999999999999999973
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-06 Score=81.74 Aligned_cols=160 Identities=10% Similarity=-0.028 Sum_probs=117.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAG-LHPNEQ----TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYS 377 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 377 (600)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...|+.+.+...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887642 223321 2334666677778999999999988753222223 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-------C-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchH
Q 007530 378 CMIDILGRAGLIHEAYDLILNMP-------F-DAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNH 442 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 442 (600)
.+...|...|++++|...++++- . .+. ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999888887651 1 122 3478889999999999999999999998754322 5678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHhh
Q 007530 443 LLLSNIYAANRR-WEEVARARKLIR 466 (600)
Q Consensus 443 ~~l~~~~~~~g~-~~~a~~~~~~m~ 466 (600)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 699999887765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.3e-07 Score=80.35 Aligned_cols=123 Identities=11% Similarity=-0.041 Sum_probs=89.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcC
Q 007530 342 SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYR 419 (600)
Q Consensus 342 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~ 419 (600)
.+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445555666666666665442 345556666666666666666666666554 11 235677888888888888
Q ss_pred ChHHHHHHHHHHhcCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 420 NLELAEIAAKQLFGMEPDNA----------------GNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
++++|...++++++..|.+. ..+..++.+|...|++++|...++...+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88889889999888888766 789999999999999999999999988654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.9e-07 Score=86.67 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHH
Q 007530 239 ISSVICACAGLAALIQGKQVHAVLC 263 (600)
Q Consensus 239 ~~~ll~a~~~~g~~~~a~~~~~~~~ 263 (600)
|..+...+...|++++|...+...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344444444455555555444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-06 Score=77.02 Aligned_cols=144 Identities=9% Similarity=-0.054 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 007530 275 SSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE 354 (600)
Q Consensus 275 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 354 (600)
..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455666777777777777777776677777777777777777777777777776642 334556666667777777777
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 355 KGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 355 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+|.+.|+.+.+...-.+... +...| +...|+ ...|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777654321111000 00000 012232 46778888888889999999999999999
Q ss_pred CCCCC
Q 007530 434 MEPDN 438 (600)
Q Consensus 434 ~~p~~ 438 (600)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.8e-07 Score=77.97 Aligned_cols=153 Identities=12% Similarity=0.009 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 007530 172 VGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICA-CA 247 (600)
Q Consensus 172 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 247 (600)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 345566677788888888888888765 35677888888888888888888888876554 2333222111111 11
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC--c---CHhHHHHHHHHHHhcCChHHHH
Q 007530 248 GLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE--K---NVVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 248 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~ 322 (600)
..+....+...+..+++.. +.+...+..+...|...|++++|...|+++.+ | +...|..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1111222344455544432 22344444444444444444444444444332 1 1224444444444444444444
Q ss_pred HHHHH
Q 007530 323 ILFEK 327 (600)
Q Consensus 323 ~l~~~ 327 (600)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-06 Score=78.78 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCChhHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR----DVFECKQLHVFALKAAMDRNVFVG 173 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~ 173 (600)
+..++..+-..|...+++++|+..|++..+.| +...+..+...+.. + +.++|...+....+.| +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44445555555555555555555555555544 34444444444444 4 5555555555555543 44455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHccCCCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007530 174 TALLDVYAK----CGLISDASRVFESMPERN-----EVTWSSMVAGFVQ----NELYEEALILFRRAQVLGLEYNQFTIS 240 (600)
Q Consensus 174 ~~li~~y~~----~g~~~~A~~~f~~m~~~d-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 240 (600)
..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|+..|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 555555555 556666666666655432 4566666666666 56677777777666654 12333444
Q ss_pred HHHHHHHcc-C-----chHHHHHHHHHHHHhC
Q 007530 241 SVICACAGL-A-----ALIQGKQVHAVLCKTG 266 (600)
Q Consensus 241 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~~ 266 (600)
.+...|... | +.++|...+....+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444322 2 5666666666666665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.6e-07 Score=73.15 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 415 (600)
..+......+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++. .+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345556666777777777777777766432 224566667777777777777777777665 223 3577888999999
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
...|++++|...++++++++|+++..+..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998887777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.3e-07 Score=74.69 Aligned_cols=97 Identities=11% Similarity=-0.075 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445566677788888888888888876 223 46788889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 007530 450 AANRRWEEVARARKLIRDS 468 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-05 Score=76.21 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhhCC
Q 007530 214 NELYEEALILFRRAQVLGLEYNQF-TISSVICACAGLA--ALIQGKQVHAVLCKTGFGSNMFAASSLVDMY----AKCGC 286 (600)
Q Consensus 214 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y----~~~g~ 286 (600)
....++|++++.++... .|+.. .++.--.++...+ .++++...+..++... +.+..+|+.-...+ .+.+
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~- 121 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN- 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc-
Confidence 33445677777776653 34333 3444444444555 5666666666665543 22333333322222 2220
Q ss_pred HHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHH
Q 007530 287 VVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVE--KGKSYFDLMV 364 (600)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~ 364 (600)
..+++++++++++++.+.. +-|...+..-...+.+.|.++ ++.++++.++
T Consensus 122 ---------------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i 173 (306)
T 3dra_A 122 ---------------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI 173 (306)
T ss_dssp ---------------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 0044555555555555432 223444444444444444444 5555555554
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCC------HHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHhcCC
Q 007530 365 KQHNVLPNVFHYSCMIDILGRAGL------IHEAYDLILNM-P-FDATASMWGSLLASCRNYRN-LELAEIAAKQLFGME 435 (600)
Q Consensus 365 ~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~ 435 (600)
+.. .-+...|+.-..++.+.|. ++++++.++++ . .+.|...|+.+...+...|+ .+....+..++++++
T Consensus 174 ~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 174 DTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 332 1233344433333444443 55555555544 1 12355666666666655554 233444555555544
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 436 ---PDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 436 ---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
|.++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55566666666666666777777776666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=83.77 Aligned_cols=164 Identities=9% Similarity=-0.078 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--Ccc--H
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-E----QTYISVLSACSHIGMVEKGKSYFDLMVKQHNV--LPN--V 373 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 373 (600)
..+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999999988777532211 1 22334555667788999999999887642211 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC------C
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-------PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD------N 438 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~ 438 (600)
..|+.+...|...|++++|...+++. +..+. ..++..+...|...|++++|...+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888889999999999998888765 21221 258888999999999999999999999875432 1
Q ss_pred cchHHHHHHHHHhcCChHHH-HHHHHHhh
Q 007530 439 AGNHLLLSNIYAANRRWEEV-ARARKLIR 466 (600)
Q Consensus 439 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 466 (600)
...|..++.+|.+.|++++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788999999999999999 77676654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-05 Score=71.88 Aligned_cols=215 Identities=7% Similarity=-0.083 Sum_probs=140.5
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----HHc-
Q 007530 111 TNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR--DVFECKQLHVFALKAAMDRNVFVGTALLDVY----AKC- 183 (600)
Q Consensus 111 ~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 183 (600)
+....++|++++..++... |-+...|+.--..+...+ +++++...++.+++..+. +..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3344468888888888763 445556677777777777 888888888888887654 556666544444 444
Q ss_pred --CCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-----
Q 007530 184 --GLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYE--EALILFRRAQVLGLEYNQFTISSVICACAGLAA----- 251 (600)
Q Consensus 184 --g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 251 (600)
++++++..+++.+.+ +|-.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.......+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 678888888887764 46777877777777778877 8888888888764 3355566655555555555
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHH-HHHHHhcCCC------cCHhHHHHHHHHHHhcCChHHHHH
Q 007530 252 -LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVD-AYFVFSGIEE------KNVVLWNTMISGFSRHARSVEVMI 323 (600)
Q Consensus 252 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 323 (600)
++++.+....++... +.|...|+-+...+.+.|+... +..+..++.+ ++...+..+...|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 667777777777665 5566677766666666665333 3334444332 244555555566666666666666
Q ss_pred HHHHHHH
Q 007530 324 LFEKMQQ 330 (600)
Q Consensus 324 l~~~m~~ 330 (600)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=79.53 Aligned_cols=183 Identities=11% Similarity=-0.083 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhhCCHHHHHHHHhcCCC--cC-H---hHHHH
Q 007530 236 QFTISSVICACAGLAALIQGKQVHAVLCKTGFGS--NMFAASSLVDMYAKCGCVVDAYFVFSGIEE--KN-V---VLWNT 307 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 307 (600)
...+-.....+...|++++|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566777889999999999999999864221 245777889999999999999999998763 32 2 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 007530 308 MISGFSR------------------HARSVEVMILFEKMQQAGLHPNEQ-TYISVLSACSHIGMVEKGKSYFDLMVKQHN 368 (600)
Q Consensus 308 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 368 (600)
+..++.. .|+.++|+..|+++.+. .|+.. ...... + ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHHH----
Confidence 5555544 57899999999999885 45532 211111 0 001111110
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 369 VLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 369 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++++....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12234567788899999999888876 22233 25688888999999999999999999998888754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-06 Score=74.38 Aligned_cols=126 Identities=9% Similarity=0.018 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 416 (600)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444455555666666666666554321 224455556666666666666666666554 11 235677888888888
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHH--HHHhcCChHHHHHHHHHhh
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSN--IYAANRRWEEVARARKLIR 466 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 466 (600)
..|++++|...+++++++.|.++..+..+.. .+...|++++|...++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8999999999999999999988777744444 4778899999999887664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-06 Score=69.92 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 415 (600)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|..+++++ . .+.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344445555555556666666555554321 223445555566666666666666666554 1 123566777778888
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888877777776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-07 Score=86.36 Aligned_cols=191 Identities=5% Similarity=-0.066 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSAC 347 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 347 (600)
...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3344455556666666666666665543 2355666777777777777777777777776542 22455666777777
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 007530 348 SHIGMVEKGKSYFDLMVKQHNVLPNV-FHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 348 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
...|++++|...|+...+.. |+. ..+...+....+......... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 77778888877777765422 210 001111111111111111111 1222223344333333 222 2688999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhhC
Q 007530 427 AAKQLFGMEPDNAGNHLLLSNIYAAN-RRWEEVARARKLIRDS 468 (600)
Q Consensus 427 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 468 (600)
.++++++++|++......+...+.+. +++++|.++|....+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998877777777777766 7899999999888653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=7.6e-06 Score=78.62 Aligned_cols=62 Identities=10% Similarity=-0.112 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCc-hHHHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVL----GLEYN-QFTISSVICACAGLAA-LIQGKQVHAVLCK 264 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~ 264 (600)
+|+.+...|.+.|++++|+..+++.... +..+. ..+|..+..++...|+ .++|...+..++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4555555555555555555555554321 11111 3455555555566663 4666665555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-06 Score=70.77 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=75.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 416 (600)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44444455555555555555555554321 223445555555666666666666665554 11 234667777778888
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
..|+++.|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888877765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=84.57 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=106.2
Q ss_pred CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 286 CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 286 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
++++|...|+...+ .+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.+.-.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~- 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA- 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH-
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH-
Confidence 33444444444332 134566666667777777777777777766542 221000 0011110000
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.....|..+..+|.+.|++++|...+++. ... .+...|..+..++...|++++|...++++++++|+++.
T Consensus 194 --------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 01346677777778888888888777765 223 35788889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHH-HHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEV-ARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a-~~~~~~m~ 466 (600)
.+..++.++...|++++| ...++.|.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 44555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=70.83 Aligned_cols=113 Identities=8% Similarity=-0.029 Sum_probs=64.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 417 (600)
+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3334444444444444444444443211 113334444444444444444444444433 11 2245667777777777
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
.|++++|...++++++.+|.+...+..++.++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888877788888887776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-06 Score=74.37 Aligned_cols=118 Identities=6% Similarity=0.024 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHH-HHHcCCh--HHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLAS-CRNYRNL--ELA 424 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~-~~~~~~~--~~a 424 (600)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++. .. +.+...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344445555555444321 123344555555555555555555555543 11 1245555556666 5566666 777
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 425 EIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...++++++.+|+++..+..++.+|...|++++|...++...+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777777777777777777777777777777777766543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=69.84 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
..+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45556666777778888887777765 222 3577888888888889999999999999999999988899999999999
Q ss_pred cCChHHHHHHHHHhhhC
Q 007530 452 NRRWEEVARARKLIRDS 468 (600)
Q Consensus 452 ~g~~~~a~~~~~~m~~~ 468 (600)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999998887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=87.86 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=86.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLEL 423 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 423 (600)
.+...|++++|.+.+++.++.. +.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3455677777777777776432 224667777777777777777777777765 2334 57788899999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHH
Q 007530 424 AEIAAKQLFGMEPDNAGNHLLLSNI--YAANRRWEEVARARKL 464 (600)
Q Consensus 424 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 464 (600)
|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999899888888 8889999999999874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=77.14 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=80.4
Q ss_pred hcCChHHHHH---HHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHc----CCCCCChhhHHHHHHHHhcCCChH
Q 007530 80 KCGLISGARK---VFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLRE----GKTPYSEFTVSSVLCACAAKRDVF 152 (600)
Q Consensus 80 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~p~~~t~~~ll~~~~~~~~~~ 152 (600)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +..+....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 554433334556666777777777777777777666552 101122344555566666666777
Q ss_pred HHHHHHHHHHHh---CC-C--CChhHHHHHHHHHHHcCCHHHHHHHHccCCC-----CC----HHHHHHHHHHHHhCCCH
Q 007530 153 ECKQLHVFALKA---AM-D--RNVFVGTALLDVYAKCGLISDASRVFESMPE-----RN----EVTWSSMVAGFVQNELY 217 (600)
Q Consensus 153 ~a~~~~~~~~~~---g~-~--~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~ 217 (600)
+|...+...++. .. . ....++..+...|...|++++|...|++..+ .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666665544 11 1 1123455566666666666666666554321 11 12344555556666666
Q ss_pred HHHHHHHHHHH
Q 007530 218 EEALILFRRAQ 228 (600)
Q Consensus 218 ~~A~~~~~~m~ 228 (600)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=76.78 Aligned_cols=158 Identities=14% Similarity=0.077 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh------hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---CC--h
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSE------FTVSSVLCACAAKRDVFECKQLHVFALKAAMD---RN--V 170 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~--~ 170 (600)
+...+..+...|++++|++.+.+..+.. +.+. ..+..+...+...|++++|...+..+++.... +. .
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3344555566666666666666655542 1111 11222333344445555555555555432111 11 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHccCCC-----CC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-C
Q 007530 171 FVGTALLDVYAKCGLISDASRVFESMPE-----RN-----EVTWSSMVAGFVQNELYEEALILFRRAQVLG----LEY-N 235 (600)
Q Consensus 171 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~d-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~ 235 (600)
.+++.+...|...|++++|...|++..+ ++ ..+|+.+...|.+.|++++|+..+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 2455555555555555555555544320 11 1355555556666666666666665544321 000 0
Q ss_pred HHHHHHHHHHHHccCchHHH-HHHHHH
Q 007530 236 QFTISSVICACAGLAALIQG-KQVHAV 261 (600)
Q Consensus 236 ~~t~~~ll~a~~~~g~~~~a-~~~~~~ 261 (600)
..+|..+...+...|+.++| ...+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 23444444445555555555 443333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=81.75 Aligned_cols=134 Identities=11% Similarity=-0.092 Sum_probs=76.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHH
Q 007530 307 TMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN--VFHYSCMIDILG 384 (600)
Q Consensus 307 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 384 (600)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHHH
Confidence 3445556666666666666665543 24433333444456666677777766664431 11 111 224555566666
Q ss_pred hcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 385 RAGLIHEAYDLILNM---PFDAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+.|++++|+..|++. +..|. ...+.....++...|+.++|...++++...+|+ +.....|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777777777776655 11132 235566666777777777777777777777776 5444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-06 Score=70.68 Aligned_cols=97 Identities=10% Similarity=-0.059 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666666666666666654 2223 4666777777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 007530 450 AANRRWEEVARARKLIRDS 468 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777776653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.8e-06 Score=73.32 Aligned_cols=81 Identities=14% Similarity=-0.045 Sum_probs=40.7
Q ss_pred hCCHHHHHH---HHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHH
Q 007530 284 CGCVVDAYF---VFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA----GLHP-NEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 284 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~ 355 (600)
.|++++|.+ .+..-+......++.+...+...|++++|+..+++.... +..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 443322234455555555666666666666666655441 1111 12344455555556666666
Q ss_pred HHHHHHHHH
Q 007530 356 GKSYFDLMV 364 (600)
Q Consensus 356 a~~~~~~~~ 364 (600)
|...+++..
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.4e-06 Score=71.53 Aligned_cols=127 Identities=8% Similarity=0.017 Sum_probs=96.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCCH--
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI-LGRAGLI-- 389 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 389 (600)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 3456778888888888999999999999887543 2356677777777 7788888
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 390 HEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
++|...+++. ...| +...|..+...+...|+++.|...+++++++.|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999888876 2234 577888899999999999999999999999999886544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.29 E-value=9.9e-06 Score=69.87 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=66.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
.|..+...+...|++++|...|++..+. .+.+..++..+...+...|++++|...+..+++..+. +..++..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4555666666667777777776666665 2445555666666666666666666666666655322 444555555555
Q ss_pred HHcCCHHHHHHHHccCCC---CCHHHHHH--HHHHHHhCCCHHHHHHHHHHH
Q 007530 181 AKCGLISDASRVFESMPE---RNEVTWSS--MVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~---~d~~~~~~--li~~~~~~g~~~~A~~~~~~m 227 (600)
.+.|++++|.+.|++..+ .+...+.. ++..+.+.|++++|+..+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555554432 12233322 222244445555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-05 Score=64.20 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 416 (600)
.+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444455555555555555555554321 113334444444455555555555444443 1111 2344444444444
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHH
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLL 444 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 444 (600)
..|++++|...++++++.+|+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4555555555555555544444443333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=69.52 Aligned_cols=94 Identities=14% Similarity=-0.006 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANR 453 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 453 (600)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445566777888888888888876 2334 67888888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhCC
Q 007530 454 RWEEVARARKLIRDSE 469 (600)
Q Consensus 454 ~~~~a~~~~~~m~~~~ 469 (600)
++++|...++...+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998887543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-05 Score=63.66 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444444455555555544443 11 123444444444444455555555555555555554444444555555555
Q ss_pred CChHHHHHHHHHhh
Q 007530 453 RRWEEVARARKLIR 466 (600)
Q Consensus 453 g~~~~a~~~~~~m~ 466 (600)
|++++|...++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555544444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.9e-06 Score=68.43 Aligned_cols=97 Identities=9% Similarity=-0.012 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+...|++++|...|++. ... .+...|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666677777777777777777664 222 34677888888888888899999999999998898888889999999
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 007530 450 AANRRWEEVARARKLIRDS 468 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~ 468 (600)
...|++++|...++...+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=64.74 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888889999999999999999887 2 23467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCC
Q 007530 451 ANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~~~ 469 (600)
..|++++|...++.+.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.6e-06 Score=69.66 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007530 100 VSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDV 179 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (600)
..|..+...+.+.|++++|+..|++..... |.+...|..+..++...|++++|...++.+++..+. +...+..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 344444445555555555555555554442 333444444444444444444444444444443322 23333333333
Q ss_pred HHHcCCHHHHHHHH
Q 007530 180 YAKCGLISDASRVF 193 (600)
Q Consensus 180 y~~~g~~~~A~~~f 193 (600)
|.+.|++++|...|
T Consensus 114 ~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 114 QLRLKAPLKAKECF 127 (151)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33333333333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-06 Score=66.49 Aligned_cols=96 Identities=15% Similarity=0.002 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCC--CcchHHHHHHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPD--NAGNHLLLSNIY 449 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 449 (600)
..+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. ++..+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34455566666677777777766654 11 235667778888888888888888888888888888 888888888889
Q ss_pred Hhc-CChHHHHHHHHHhhhCC
Q 007530 450 AAN-RRWEEVARARKLIRDSE 469 (600)
Q Consensus 450 ~~~-g~~~~a~~~~~~m~~~~ 469 (600)
... |++++|.+.++...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 899 99999998888887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=66.04 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=89.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 370 LPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678888999999999999999999886 4444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhhhCC
Q 007530 448 IYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+|...|++++|.+.++...+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-05 Score=73.88 Aligned_cols=182 Identities=8% Similarity=-0.078 Sum_probs=132.9
Q ss_pred hhCCHHHHHHHHhcCCC---cCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---------------
Q 007530 283 KCGCVVDAYFVFSGIEE---KNVVLWNTM-------ISGFSRHARSVEVMILFEKMQQAGLHPNE--------------- 337 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 337 (600)
..++...|.+.|.+..+ .....|+.+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777788888877663 345677777 3555555555566655555443 23321
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH----H
Q 007530 338 -------QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATA----S 406 (600)
Q Consensus 338 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 406 (600)
.....+...+...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223456677889999999999998852 2464435566667889999999999999977434433 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGME--PD-NAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999998633 54 44577889999999999999999999998654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=7.5e-06 Score=73.46 Aligned_cols=170 Identities=7% Similarity=-0.057 Sum_probs=98.2
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
......|+++.|.+.++.-.+ .....|..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence 334445666666666654332 13455666777777788888888888877763 2211000000 0000
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
- ... .....+..+..+|.+.|++++|...+++. .. +.+...|..+..++...|+++.|...++++++
T Consensus 82 ~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 K---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0 000 01245666667777777777777777665 22 23577888888899999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHH-HHHHHhhhCC
Q 007530 434 MEPDNAGNHLLLSNIYAANRRWEEVA-RARKLIRDSE 469 (600)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 469 (600)
++|+++..+..+..++...++.+++. ..++.|..++
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888887776 4455554433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00056 Score=66.18 Aligned_cols=180 Identities=9% Similarity=-0.086 Sum_probs=123.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
|+.+-....+.+..++|++++.+++... |-+..+|+.--..+...+ +++++..+++.+++..++ +..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 4444444455566678999999998863 445566777777777777 588888998888887655 777787777777
Q ss_pred HHc-C-CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 181 AKC-G-LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYE--------EALILFRRAQVLGLEYNQFTISSVICACA 247 (600)
Q Consensus 181 ~~~-g-~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 247 (600)
.+. + +.+++.++++.+.+ +|-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 78888888888876 35667776555555545555 8888888888764 336666666666666
Q ss_pred ccCc-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCC
Q 007530 248 GLAA-------LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGC 286 (600)
Q Consensus 248 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 286 (600)
+.+. ++++.+....++... +.|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6654 566666666666654 5566667666666665554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.8e-06 Score=77.99 Aligned_cols=95 Identities=16% Similarity=-0.056 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHH
Q 007530 134 SEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAG 210 (600)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~ 210 (600)
+...+..+...+...|++++|...+..+++..+. +...+..+...|.+.|++++|...|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555566666666666666666666665433 566677777777777777777777776554 356677777788
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQV 229 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~ 229 (600)
|.+.|++++|+..|++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-05 Score=66.17 Aligned_cols=109 Identities=10% Similarity=-0.047 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN----VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSL 411 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 411 (600)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444444444444444444431 1232 334444555555555555555555443 1122 45666677
Q ss_pred HHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 412 LASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 412 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
..++...|++++|...++++++++|+++..+..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777778888888888888888887766665555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=66.39 Aligned_cols=99 Identities=15% Similarity=0.030 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 371 PNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888899999999999999999886 55676 67888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 007530 446 SNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 446 ~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+.+|...|++++|...++...+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-05 Score=65.54 Aligned_cols=98 Identities=9% Similarity=-0.028 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788888999999999999999886 22 346788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhCC
Q 007530 450 AANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~~ 469 (600)
...|++++|...++...+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-06 Score=71.62 Aligned_cols=103 Identities=10% Similarity=-0.083 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASC 415 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 415 (600)
..+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344555566666777777777777665432 225556666677777777777777777665 2223 466777888888
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...|++++|...+++++++.|+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 888999999999999998888877553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0018 Score=62.71 Aligned_cols=179 Identities=12% Similarity=-0.024 Sum_probs=104.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007530 204 WSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ-FTISSVICACAGLA-ALIQGKQVHAVLCKTGFGSNMFAASSLVDMY 281 (600)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y 281 (600)
++.+-....+.+..++|++++.++... .|+. ..++.--..+...| .++++..++..++... +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 334334444555667788888887764 3433 34454444555566 4777777777777654 44566666655555
Q ss_pred Hhh-C-CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007530 282 AKC-G-CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSV--------EVMILFEKMQQAGLHPNEQTYISVLSACS 348 (600)
Q Consensus 282 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 348 (600)
.+. + ++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555 5 66777777777664 35556665444444444444 7777777777753 225556666555555
Q ss_pred ccCC-------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 007530 349 HIGM-------VEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL 388 (600)
Q Consensus 349 ~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 388 (600)
+.+. +++++++++.++... +-|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 5554 566666666665432 2245555555555555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=67.51 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~ 417 (600)
+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...|++. ... .+...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3334445555566666666666554322 124445555556666666666666666554 112 245567777777888
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
.|++++|...+++++++.|+++.......
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88888888888888888887776544433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=64.52 Aligned_cols=108 Identities=9% Similarity=-0.112 Sum_probs=62.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRN 417 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 417 (600)
+......+...|++++|...|+..++.. +.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444444555555555555555554321 123445555555555556666665555544 1222 45667777777777
Q ss_pred cCChHHHHHHHHHHhcCC------CCCcchHHHHHHHH
Q 007530 418 YRNLELAEIAAKQLFGME------PDNAGNHLLLSNIY 449 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 449 (600)
.|++++|...++++++++ |+++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 777778888888877777 66665555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-05 Score=67.66 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLAS 414 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 414 (600)
...+..+...+...|++++|+..|+..++.. +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555556666666666666666665432 224556666666777777777777776655 2233 47788888899
Q ss_pred HHHcCChHHHHHHHHHHhcCCCCCcchHHHHH
Q 007530 415 CRNYRNLELAEIAAKQLFGMEPDNAGNHLLLS 446 (600)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 446 (600)
+...|++++|...++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887654443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-05 Score=68.05 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888999999999999999999999999999999999999999999999999887754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=65.90 Aligned_cols=93 Identities=4% Similarity=-0.085 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc-------hHHHH
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG-------NHLLL 445 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 445 (600)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555666777777777777777665 2233 4778888888889999999999999999988876543 56778
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 007530 446 SNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 446 ~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999987764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-05 Score=78.76 Aligned_cols=160 Identities=10% Similarity=0.000 Sum_probs=103.5
Q ss_pred CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 286 CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 286 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
++++|...|+...+ .....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ...
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~ 314 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES 314 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH
Confidence 34444444443332 23456666777777777777777777777653 1221000 0 000000 000
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
-....|..+..+|.+.|++++|+..+++. ... .+...|..+..++...|++++|...++++++++|++..
T Consensus 315 --------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 315 --------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred --------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 01346777777888888888888888776 222 35788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHH-HHHHhhh
Q 007530 441 NHLLLSNIYAANRRWEEVAR-ARKLIRD 467 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 467 (600)
.+..++.++...|+++++.+ .++.|..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 3555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-05 Score=63.99 Aligned_cols=100 Identities=6% Similarity=-0.078 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHH
Q 007530 336 NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLA 413 (600)
Q Consensus 336 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~ 413 (600)
+...+..+...+...|++++|...|+..++.. +.+...+..+...|...|++++|...+++. ... .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34555555555666666666666666655332 223455566666666666666666666554 112 24667777777
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCC
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~ 437 (600)
.+...|+++.|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777778888888888888777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-05 Score=65.19 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC---cchHHHHHHHHHh
Q 007530 380 IDILGRAGLIHEAYDLILNM-PFDAT-A---SMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN---AGNHLLLSNIYAA 451 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 451 (600)
...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34455556666665555544 11122 1 355566666677777777777777777777776 5557777777777
Q ss_pred cCChHHHHHHHHHhhhC
Q 007530 452 NRRWEEVARARKLIRDS 468 (600)
Q Consensus 452 ~g~~~~a~~~~~~m~~~ 468 (600)
.|++++|...++...+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.4e-06 Score=75.02 Aligned_cols=120 Identities=11% Similarity=-0.006 Sum_probs=58.5
Q ss_pred HHHHHHHhcCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh--------------
Q 007530 73 ILINFYSKCGLISGARKVFDEMPQ---RCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSE-------------- 135 (600)
Q Consensus 73 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~-------------- 135 (600)
..+......|.++.+.+.++.... .....|..+...+.+.|++++|+..|++.+... +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHH
Confidence 334444455666666666654332 234567777888888999999999999888752 2222
Q ss_pred --hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 136 --FTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 136 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
..+..+..++...|++++|...+..+++..+ .+..++..+..+|...|++++|.+.|++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444444444444555555554444444422 1333444444444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-05 Score=62.82 Aligned_cols=95 Identities=6% Similarity=-0.051 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-------cchHHH
Q 007530 374 FHYSCMIDILGRAGLIHEAYDLILNM-P-FDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-------AGNHLL 444 (600)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 444 (600)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666667777777777777655 1 12356677777788888888888888888888877665 667888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC
Q 007530 445 LSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 445 l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
++.+|...|++++|.+.++...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999888764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=67.16 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcC-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGM-------EPDNAGNH----LLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888887 99998899 9999999999999999999988864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.001 Score=64.07 Aligned_cols=189 Identities=8% Similarity=-0.014 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC--CHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG--CVVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR-SVEVMILF 325 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 325 (600)
++++..++..++... +-+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 334555554444444555 25566666655543 355566655555555565 46666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----
Q 007530 326 EKMQQAGLHPNEQTYISVLSACSHI--------------GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA----- 386 (600)
Q Consensus 326 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 386 (600)
+++.+.. +-|...|+.....+.+. +.++++.+++...+... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccc
Confidence 6666643 22444444433333322 33556666666555332 22444454443344333
Q ss_pred ------CCHHHHHHHHHcC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 387 ------GLIHEAYDLILNM-PFDATASMWGSLLASC-----RNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 387 ------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
+.++++.+.++++ ...||. .|..+..+. ...+..++....+.++.+++|...+.|.-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 2345555555554 233443 233211111 123455556666666666666554444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.99 E-value=4.8e-05 Score=74.57 Aligned_cols=95 Identities=9% Similarity=-0.075 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC---------------hhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYS---------------EFTVSSVLCACAAKRDVFECKQLHVFAL 162 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~---------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 162 (600)
+...|..+...|.+.|++++|+..|++.+... +.+ ...+..+..++...|++++|...+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45578888888999999999999999988863 222 2344444444444444444444444444
Q ss_pred HhCCCCChhHHHHHHHHHHHcCCHHHHHHHHcc
Q 007530 163 KAAMDRNVFVGTALLDVYAKCGLISDASRVFES 195 (600)
Q Consensus 163 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 195 (600)
+..+. +...+..+..+|...|++++|...|++
T Consensus 224 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 224 ELDSN-NEKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44322 333444444444444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.9e-06 Score=66.95 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHcC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007530 387 GLIHEAYDLILNM-PF---DA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 387 g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
|++++|+..|++. .. .| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444555555443 22 12 2345666666666667777777777777777777766777777777777777777776
Q ss_pred HHHhhh
Q 007530 462 RKLIRD 467 (600)
Q Consensus 462 ~~~m~~ 467 (600)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.5e-05 Score=59.48 Aligned_cols=98 Identities=13% Similarity=-0.000 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---CHHHHHHHHHHH
Q 007530 340 YISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA---TASMWGSLLASC 415 (600)
Q Consensus 340 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 415 (600)
+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3444445555556666666665554322 223445555566666666666666666554 1222 466777777777
Q ss_pred HHc-CChHHHHHHHHHHhcCCCCCc
Q 007530 416 RNY-RNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 416 ~~~-~~~~~a~~~~~~~~~~~p~~~ 439 (600)
... |++++|.+.++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 778888888888777777653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.7e-05 Score=64.38 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLH-PNE----QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYS 377 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 377 (600)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 34555666666667777777776665543100 111 24444555555556666666555554321100000
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC------CCcchHHHHHHHHH
Q 007530 378 CMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEP------DNAGNHLLLSNIYA 450 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~ 450 (600)
.+ ...++..+...+...|++++|...+++++++.+ .....+..++.+|.
T Consensus 85 ------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 00 123445555556666666666666666654321 12346677888888
Q ss_pred hcCChHHHHHHHHHhhh
Q 007530 451 ANRRWEEVARARKLIRD 467 (600)
Q Consensus 451 ~~g~~~~a~~~~~~m~~ 467 (600)
..|++++|.+.+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888877653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=60.12 Aligned_cols=113 Identities=6% Similarity=-0.057 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDI 382 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 382 (600)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555566666666666666666665542 2244455555555566666666666665554321 10
Q ss_pred HHhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 383 LGRAGLIHEAYDLILNMPFDAT----ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
..++ ..+|..+...+...|+++.|...++++++..| ++.....+..+
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 0111 34555566666666666666666666666666 34444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=7e-05 Score=74.36 Aligned_cols=137 Identities=9% Similarity=-0.006 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHH
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMID 381 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 381 (600)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... .... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 34666666667777777777777666542 01000 00001 1110 1122 4567888888
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVA 459 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 459 (600)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998876 4445 57889999999999999999999999999999999999999999999888888776
Q ss_pred HH
Q 007530 460 RA 461 (600)
Q Consensus 460 ~~ 461 (600)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0016 Score=62.66 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 007530 287 VVDAYFVFSGIE---EKNVVLWNTMISGFSRHAR--SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGM-VEKGKSYF 360 (600)
Q Consensus 287 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 360 (600)
++++..+++.+. .++..+|+.-.-.+...|+ +++++++++++.+.. +-|...|+.-...+...|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666655 3577888887777777774 789999999999864 3366777766666677777 58999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhc--------------CCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHc------
Q 007530 361 DLMVKQHNVLPNVFHYSCMIDILGRA--------------GLIHEAYDLILNM-P-FDATASMWGSLLASCRNY------ 418 (600)
Q Consensus 361 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~------ 418 (600)
+.+++.. +-+...|+....++.+. +.++++++.+.+. . .+.|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9988653 33566666666555554 4577888888766 2 234678887666655554
Q ss_pred -----CChHHHHHHHHHHhcCCCCCcchHHHHHHH---HHhcCChHHHHHHHHHhhhCC
Q 007530 419 -----RNLELAEIAAKQLFGMEPDNAGNHLLLSNI---YAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 419 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+.++++++.++++++++|++.-.+..++.. ....|..+++...+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457888999999999999874433333221 123455666666666665433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00013 Score=74.06 Aligned_cols=162 Identities=4% Similarity=-0.113 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHh---cCCCc-cHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQA-GLHPNEQ----TYISVLSACSHIGMVEKGKSYFDLMVKQ---HNVLP-NVFH 375 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 375 (600)
+..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|+.+++..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555556666666666665554431 0111111 1112222233455666666666554321 11111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC---CC----cc
Q 007530 376 YSCMIDILGRAGLIHEAYDLILNM-------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEP---DN----AG 440 (600)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~ 440 (600)
+..+...|...|++++|..++++. ..+|. ..++..++..|...|++++|...+++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667776666666543 11121 34566666667777777777777766665321 11 22
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556666667777777766655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00017 Score=59.13 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
+|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555666666666666666665531 1234455556666666666666666666554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=75.58 Aligned_cols=124 Identities=9% Similarity=-0.003 Sum_probs=93.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhcC--C---Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHH
Q 007530 346 ACSHIGMVEKGKSYFDLMVKQHN--V---LP-NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASMWG 409 (600)
Q Consensus 346 a~~~~g~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 409 (600)
.+...|++++|+.++++..+... + .| ...+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888887777654321 1 12 2456788888888888888888877664 34455 46788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhc-----CCCCCcchH---HHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 410 SLLASCRNYRNLELAEIAAKQLFG-----MEPDNAGNH---LLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 410 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.|...|...|++++|+.+++++++ +.|+.|.+- ..|..++...|++++|..++..++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 677765543 478888899999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=72.30 Aligned_cols=97 Identities=7% Similarity=-0.008 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhc---CCCcc--
Q 007530 303 VLWNTMISGFSRHARSVEVMILFEKMQQA--GL--HPN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQH---NVLPN-- 372 (600)
Q Consensus 303 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-- 372 (600)
.++..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++...... +.+|.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 45666777777788888888887776543 11 121 3467777888888899999988888765422 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
...+..+...+...|++++|...|.+.
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345666677777888888887766544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.2e-05 Score=75.89 Aligned_cols=147 Identities=9% Similarity=-0.070 Sum_probs=74.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 455666777777888888888888887763 454332 222333333332211 125666777
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY-AANRRWEEV 458 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 458 (600)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++..+..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877765 2233 5677888888888888888888888888888888877777777763 344566667
Q ss_pred HHHHHHhhhC
Q 007530 459 ARARKLIRDS 468 (600)
Q Consensus 459 ~~~~~~m~~~ 468 (600)
...++.|.+.
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=9.3e-05 Score=63.00 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCC-----cC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEE-----KN----VVLWNTMISGFSRHARSVEVMILFEKMQQAGL-HPN---- 336 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 336 (600)
..++..+...|...|++++|...|++..+ .+ ..++..+...+...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678889999999999999999987653 11 24788888899999999999999999876311 112
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
...+..+...+...|++++|...++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566677777888888888888877653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00022 Score=58.24 Aligned_cols=99 Identities=10% Similarity=-0.109 Sum_probs=55.0
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHc
Q 007530 345 SACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT----ASMWGSLLASCRNY 418 (600)
Q Consensus 345 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~ 418 (600)
..+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|...+++. ...|+ ...+..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444455555555555555433211110 124444555555566666665555544 11122 45566667777777
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHH
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
|++++|...++++++..|+++....
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHH
Confidence 8888888888888887777654433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=7.9e-05 Score=60.62 Aligned_cols=94 Identities=14% Similarity=-0.126 Sum_probs=63.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVY 180 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 180 (600)
.+..+...+.+.|++++|+..|++.++. -|.+...+..+..++...|+.++|...++.+++..+. +...+..+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4555666677777777777777777775 3456666666777777777777777777777776543 455666666666
Q ss_pred HHcCCHHHHHHHHccCC
Q 007530 181 AKCGLISDASRVFESMP 197 (600)
Q Consensus 181 ~~~g~~~~A~~~f~~m~ 197 (600)
.+.|++++|...|++..
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 96 TNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66676666666666543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=64.05 Aligned_cols=92 Identities=10% Similarity=-0.076 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC------cchHH
Q 007530 372 NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN------AGNHL 443 (600)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 443 (600)
+...+..+...+.+.|++++|.+.|++. ... .+...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456666777777888888888877765 222 357788889999999999999999999999999988 66777
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 007530 444 LLSNIYAANRRWEEVARARK 463 (600)
Q Consensus 444 ~l~~~~~~~g~~~~a~~~~~ 463 (600)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 78888887777776655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.9e-05 Score=63.80 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc-chHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA-GNHLLLSNI 448 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 448 (600)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777777888888888888887765 2233 577888899999999999999999999999999877 444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=8e-05 Score=62.92 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM--------PFDAT-ASMW----GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4444455555555555554444433 33676 5688 899999999999999999999999999988765
Q ss_pred HHH
Q 007530 442 HLL 444 (600)
Q Consensus 442 ~~~ 444 (600)
+.-
T Consensus 139 ~~~ 141 (159)
T 2hr2_A 139 TPG 141 (159)
T ss_dssp CTT
T ss_pred HHH
Confidence 443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0002 Score=71.02 Aligned_cols=114 Identities=7% Similarity=-0.009 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHH
Q 007530 337 EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLASC 415 (600)
Q Consensus 337 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~ 415 (600)
...+..+...+.+.|++++|+..|++.++.. +... .....+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 4456777777888888888888888776421 1100 0011111111 122 457888999999
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999887643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.1e-05 Score=61.87 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEI 426 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 426 (600)
.|++++|+..|++.++...-.| +...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555666666666542100012 3445566666666667777776666655 2223 46677777777778888888888
Q ss_pred HHHHHhcCCCCCcch
Q 007530 427 AAKQLFGMEPDNAGN 441 (600)
Q Consensus 427 ~~~~~~~~~p~~~~~ 441 (600)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888877776643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00013 Score=56.99 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 403 ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
.+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357889999999999999999999999999999999999999999999999999999999887653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0014 Score=68.84 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=129.1
Q ss_pred HHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 007530 287 VVDAYFVFSGIEE---KNVVLWNTMISGFSRHAR----------SVEVMILFEKMQQAGLHPNEQTYISVLSACSHIG-- 351 (600)
Q Consensus 287 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 351 (600)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3456666666553 345667766556655565 889999999998863 235667777777778888
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc----------
Q 007530 352 MVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG-LIHEAYDLILNM-PFDA-TASMWGSLLASCRNY---------- 418 (600)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---------- 418 (600)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998643 336777777777788888 899999998887 3344 688998888777663
Q ss_pred ----CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 419 ----RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 419 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
+.++++.+.+.++++++|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999888655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00032 Score=71.87 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888899999999999999999999999999999999999999999999999999999988654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=71.31 Aligned_cols=152 Identities=7% Similarity=-0.037 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI 350 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 350 (600)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577888899999999999999997653221111 1223333444433221 13677788888899
Q ss_pred CCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH-HHHcCChHHHHHH
Q 007530 351 GMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLAS-CRNYRNLELAEIA 427 (600)
Q Consensus 351 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~~~~~~a~~~ 427 (600)
|++++|+..++..++.. +.+...|..+..+|...|++++|...|++. .+.|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887542 236778888888999999999999999887 44554 4455555544 2345677888899
Q ss_pred HHHHhcCCCCCc
Q 007530 428 AKQLFGMEPDNA 439 (600)
Q Consensus 428 ~~~~~~~~p~~~ 439 (600)
+.++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=54.21 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 373 VFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666666777777777777777665 22 2356778888888888899999999999999999988888888888876
Q ss_pred hcC
Q 007530 451 ANR 453 (600)
Q Consensus 451 ~~g 453 (600)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=73.87 Aligned_cols=114 Identities=7% Similarity=-0.086 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555554431 1124444555555555555555555555554221 12344455555555555555555
Q ss_pred HHHHHcC-CCCC-CHHHHHHHHHH--HHHcCChHHHHHHHH
Q 007530 393 YDLILNM-PFDA-TASMWGSLLAS--CRNYRNLELAEIAAK 429 (600)
Q Consensus 393 ~~~~~~m-~~~p-~~~~~~~ll~~--~~~~~~~~~a~~~~~ 429 (600)
.+.+++. ...| +...+..+..+ +...|++++|...++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555443 1111 12223333332 444555555555555
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=57.81 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=62.5
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 392 AYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 392 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...++...+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444443 2233 57788888888999999999999999999999999889999999999999999999999887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00051 Score=52.54 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 007530 402 DATASMWGSLLASCRNYRN---LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEV 470 (600)
Q Consensus 402 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 470 (600)
++|+..|..+..++...++ .++|..+++++++++|+++.....++..+.+.|++++|...|+.+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888866555 79999999999999999999999999999999999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=57.26 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=69.1
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-C----hhH
Q 007530 98 CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDR-N----VFV 172 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~----~~~ 172 (600)
+...|..+...+.+.|++++|++.|++.++. .|.+...+..+..++...|++++|...+..+++..+.. + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3456777777888888888888888888776 35567777778888888888888888888887754331 1 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 173 GTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
+..+..++...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 5566666666676666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=62.01 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 385 RAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRN----------LELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555544 1222 45555555555555444 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHhhhCC
Q 007530 453 R-----------RWEEVARARKLIRDSE 469 (600)
Q Consensus 453 g-----------~~~~a~~~~~~m~~~~ 469 (600)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00083 Score=67.73 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc-----CCCCC---cchH
Q 007530 381 DILGRAGLIHEAYDLILNM---------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG-----MEPDN---AGNH 442 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~ 442 (600)
.-+.+.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455667777777776543 12222 35777888888888888888888888875 44544 4467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHH
Q 007530 443 LLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMK 505 (600)
Q Consensus 443 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~ 505 (600)
..|+.+|...|++++|..++++..+--. ..-=..||...++...|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~----------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR----------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH----------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999887754110 0000468988888888888777765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0013 Score=67.45 Aligned_cols=127 Identities=12% Similarity=-0.015 Sum_probs=66.5
Q ss_pred HHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCchhHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQVL---GLEYN----QFTISSVICACAGLAALIQGKQVHAVLCKT---GFGSNMFAASSLVDM 280 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~ 280 (600)
+..+|++++|+.++++.... -+.|+ ..+++.+..+|...|++++|..++.++++. -+.++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---------- 388 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN---------- 388 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT----------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC----------
Confidence 44567777777777665432 11121 234555555555666666666555554431 00000
Q ss_pred HHhhCCHHHHHHHHhcCCCcC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHccCC
Q 007530 281 YAKCGCVVDAYFVFSGIEEKN-VVLWNTMISGFSRHARSVEVMILFEKMQQA-----G-LHPNE-QTYISVLSACSHIGM 352 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~~ll~a~~~~g~ 352 (600)
.|+ ..+++.|...|...|++++|+.++++..+- | -.|+. .+...+-.++...+.
T Consensus 389 ------------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 ------------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 011 234555666666666666666666554431 2 12322 234445556667777
Q ss_pred HHHHHHHHHHHHH
Q 007530 353 VEKGKSYFDLMVK 365 (600)
Q Consensus 353 ~~~a~~~~~~~~~ 365 (600)
+++|+..+..+.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0059 Score=50.59 Aligned_cols=110 Identities=11% Similarity=-0.007 Sum_probs=75.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHH
Q 007530 113 GREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----CGLISD 188 (600)
Q Consensus 113 g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~ 188 (600)
+++++|++.|++..+.| .|+. . +...+...+..+.|.+.+....+.| +...+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45678888888887776 2222 2 5556666667777888887777765 56677777777777 677777
Q ss_pred HHHHHccCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 007530 189 ASRVFESMPE-RNEVTWSSMVAGFVQ----NELYEEALILFRRAQVLG 231 (600)
Q Consensus 189 A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 231 (600)
|.+.|++..+ .+..++..|...|.. .++.++|+..|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776543 456667777777776 677777777777766655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0005 Score=57.88 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc-----------CChHHHHHHHHHHhcCCCCCcc
Q 007530 390 HEAYDLILNM-PFDA-TASMWGSLLASCRNY-----------RNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 390 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
++|+..|++. .+.| +...|..+..+|... |++++|...|+++++++|++..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 3555555544 2333 345566666666554 5899999999999999999753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0052 Score=50.94 Aligned_cols=115 Identities=9% Similarity=-0.032 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDL 395 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 395 (600)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|..-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC--------
Confidence 35666667776666665 33333 444455555666666666666432 23334444444444400
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 007530 396 ILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA----NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 396 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 469 (600)
...+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 72 --------------------g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 --------------------YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------------------CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 0034445555555555443 234455555555555 556666666665555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0047 Score=46.32 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLD 178 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (600)
...|..+...+.+.|++++|+..|++..+. .+.+..++..+..++...|++++|...+..+++..+. +..++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345666666677777777777777777665 2445566666677777777777777777777666432 4555555555
Q ss_pred HHHH
Q 007530 179 VYAK 182 (600)
Q Consensus 179 ~y~~ 182 (600)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.014 Score=61.07 Aligned_cols=150 Identities=9% Similarity=-0.021 Sum_probs=118.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC----------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 007530 315 HARSVEVMILFEKMQQAGLHPNE-QTYISVLSACSHIGM----------VEKGKSYFDLMVKQHNVLPNVFHYSCMIDIL 383 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 383 (600)
....++|++.++++.+. .|+. ..|+.--.++...|+ ++++.++++.+.+.. +-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34456889999999985 5654 445544445555555 899999999998653 33666777777778
Q ss_pred HhcC--CHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc------
Q 007530 384 GRAG--LIHEAYDLILNM-P-FDATASMWGSLLASCRNYR-NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN------ 452 (600)
Q Consensus 384 ~~~g--~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 452 (600)
.+.| +++++.++++++ . ...+...|+.-.......| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999988 2 2357899999888888888 899999999999999999999999999888774
Q ss_pred --------CChHHHHHHHHHhhhC
Q 007530 453 --------RRWEEVARARKLIRDS 468 (600)
Q Consensus 453 --------g~~~~a~~~~~~m~~~ 468 (600)
++++++.+.++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888776643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.058 Score=43.08 Aligned_cols=140 Identities=6% Similarity=-0.097 Sum_probs=104.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEA 392 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 392 (600)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3467788888888887764 356667777766666777777788888775544433 35555555
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 393 YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 393 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
..-+-.++ .+......-+......|+-+.-.++...++.-+|.+|....-++++|.+.|...+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 334455566778888999999999999987777767889999999999999999999999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.053 Score=59.67 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=108.7
Q ss_pred HHHcCCChhHHHH-HHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCH
Q 007530 108 SYTTNGREQEAVA-LFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLI 186 (600)
Q Consensus 108 ~~~~~g~~~~A~~-~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 186 (600)
.....+++++|.+ ++.. ++ +......++..+...|..+.|.++.+ +. ..-......+|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VE-GKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CC-CHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhc------CC-chHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCH
Confidence 3345677777765 4311 22 12233666677777777777776542 11 1123456778999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 007530 187 SDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTG 266 (600)
Q Consensus 187 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 266 (600)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-......|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987774 568899999999999999999999998754 3445555556777777666666655554
Q ss_pred CCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007530 267 FGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEK 327 (600)
Q Consensus 267 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 327 (600)
. ++.....|.++|++++|.+++.+ .+++++|+.+-+.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 2 34445556777887777766554 4566666665554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0052 Score=61.83 Aligned_cols=92 Identities=13% Similarity=-0.011 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHHhcC--CC---c-cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHH
Q 007530 350 IGMVEKGKSYFDLMVKQHN--VL---P-NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASMWGSLLA 413 (600)
Q Consensus 350 ~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~ 413 (600)
.|++++|+.++++..+... +. | ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777776666543211 11 2 2345666777777777777777766654 33454 356777888
Q ss_pred HHHHcCChHHHHHHHHHHhc-----CCCCCcch
Q 007530 414 SCRNYRNLELAEIAAKQLFG-----MEPDNAGN 441 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 441 (600)
.|...|++++|+.+++++++ +.|+.|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 88888888888888888775 56776644
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.005 Score=47.63 Aligned_cols=64 Identities=9% Similarity=0.169 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666677777777777777777776642 22345666666777777777777777776653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0096 Score=59.93 Aligned_cols=101 Identities=10% Similarity=-0.036 Sum_probs=66.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC--CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCC-HHH
Q 007530 344 LSACSHIGMVEKGKSYFDLMVKQHN--VLP----NVFHYSCMIDILGRAGLIHEAYDLILNM---------PFDAT-ASM 407 (600)
Q Consensus 344 l~a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 407 (600)
+..+.+.|++++|+.++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3344456677777777766653211 111 2346667777777777777777776654 34455 357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhc-----CCCCCcchHHH
Q 007530 408 WGSLLASCRNYRNLELAEIAAKQLFG-----MEPDNAGNHLL 444 (600)
Q Consensus 408 ~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 444 (600)
++.|...|...|++++|+.+++++++ +.|+.|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888889999999999999988876 67887755443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0016 Score=65.53 Aligned_cols=83 Identities=13% Similarity=0.016 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc-----CCCCC---cchHHHHH
Q 007530 385 RAGLIHEAYDLILNM---------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG-----MEPDN---AGNHLLLS 446 (600)
Q Consensus 385 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~ 446 (600)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888887654 33444 46889999999999999999999999986 45554 44677899
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 007530 447 NIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 447 ~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0061 Score=48.42 Aligned_cols=73 Identities=11% Similarity=-0.088 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 007530 118 AVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVF 193 (600)
Q Consensus 118 A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 193 (600)
|+..|++..+. .|.+...+..+...+...|++++|...+..+++..+. +..++..+..+|.+.|++++|...|
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444443 2334444444444444555555555555544444321 2333444444444444444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.081 Score=58.17 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007530 280 MYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSY 359 (600)
Q Consensus 280 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 359 (600)
.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777766553 456777777777777777777777776632 22333334445555555444
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 007530 360 FDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM 399 (600)
Q Consensus 360 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (600)
-+.... .| -++....+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444322 12 1233344455666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0085 Score=49.82 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceE
Q 007530 403 ATASMWGSLLASCRNYR---NLELAEIAAKQLFGME-P-DNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477 (600)
Q Consensus 403 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 477 (600)
++..+.-.+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 56667777777777766 5668888888888876 6 345677788888888899999988888887543
Q ss_pred EEEEcCcccCcchHHHHHHHHHHHHHHHHCCCcc
Q 007530 478 WVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYKP 511 (600)
Q Consensus 478 ~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 511 (600)
|...++....+.+.+.+++.|++-
T Consensus 102 ----------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 ----------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ----------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 556666666666677777777753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.031 Score=53.98 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
++.+|..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555544444455666666666666655543 33445555556666666666665555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0085 Score=45.91 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 380 IDILGRAGLIHEAYDLILNM-PFDA-TAS-MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44566777777777777765 2233 456 788888888888999999999999999888887655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0047 Score=47.43 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 411 LLASCRNYRNLELAEIAAKQLFGMEPDNAG-NHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 411 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.++...+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677889999999999999999999999 99999999999999999999999988654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.23 Score=47.95 Aligned_cols=63 Identities=6% Similarity=-0.005 Sum_probs=40.1
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007530 300 KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMV 364 (600)
Q Consensus 300 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 364 (600)
.+...|.++...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566665555555677777777777776653 666666555566666677777777776665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.063 Score=41.63 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC---------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHH
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM---------PFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLL 445 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 445 (600)
-.|...+.+.|+++.|...|+.. +-.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34444445555555555544432 0123467788888999999999999999999999999987654443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=1 Score=38.29 Aligned_cols=103 Identities=8% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHH
Q 007530 178 DVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQ 257 (600)
Q Consensus 178 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 257 (600)
+...++|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777665 4567788888888888888888888877643 3344444555666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcC
Q 007530 258 VHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGI 297 (600)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 297 (600)
+-......|- ++.....+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5554444441 233333444556666666555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.61 Score=39.69 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=78.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKS 358 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 358 (600)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456677888887776655 4567788888888888888888888877532 3334444555677666555
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007530 359 YFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+-+... ..| -++.....+.-.|+++++.+++.+.+.-|... -....+|-.+.|.++.+.+
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 544432 222 23444455666788888888887765322211 1123356666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.047 Score=50.57 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=65.6
Q ss_pred HHHHHHHHHcC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CChHH
Q 007530 389 IHEAYDLILNM-PFDAT---ASMWGSLLASCRN-----YRNLELAEIAAKQLFGMEPDN-AGNHLLLSNIYAAN-RRWEE 457 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 457 (600)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555544 34555 4577777777777 489999999999999999974 88999999999884 99999
Q ss_pred HHHHHHHhhhCCCccCC
Q 007530 458 VARARKLIRDSEVKKEK 474 (600)
Q Consensus 458 a~~~~~~m~~~~~~~~~ 474 (600)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999998876655334
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=3.7 Score=43.00 Aligned_cols=250 Identities=9% Similarity=-0.004 Sum_probs=127.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34455566667777777776665 33355555556666777777777777666665554 22333455556555544432
Q ss_pred HH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHh---HHHHHHHHHHhc
Q 007530 253 IQ--GKQVHAVLCKTG-----------FGSNM-FAASSLVDMYAKCGCVVDAYFVFSGIEEKNVV---LWNTMISGFSRH 315 (600)
Q Consensus 253 ~~--a~~~~~~~~~~~-----------~~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~ 315 (600)
.. ..+=+..+...| ++++. .....++..+.+ ...+........ ++.. ....-+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-
Confidence 21 111112222211 11111 122223332222 222222222211 1111 11112223333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYI----SVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
.+.+.|..+|......+ ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998886543 22332222 2222333444345666666655322 2333333334444557799999
Q ss_pred HHHHHHcCCCCC-CHHHH-HHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 392 AYDLILNMPFDA-TASMW-GSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 392 A~~~~~~m~~~p-~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
|...|+.|+..+ +..-| -=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996443 22222 2244466778999999999999875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.23 Score=37.53 Aligned_cols=69 Identities=9% Similarity=-0.084 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 371 PNVFHYSCMIDILGRAGL---IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|...++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 455666677776654443 67888888776 3334 467777788888889999999999999999888844
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.11 Score=43.14 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
...+-.|.-++.+.|++++|.+.++.+++++|++....
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34555677788899999999999999999999876443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.0015 Score=64.52 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=167.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 007530 67 DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACA 146 (600)
Q Consensus 67 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~ 146 (600)
.+.+|+.|..++.+.+++.+|++-| +...|...|..+|.+..++|++++-++.+...++. . -++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~-ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A-RESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--C-CSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--h-cccccHHHHHHHHH
Confidence 4568888999998889888888777 44467778899999999999999988887766654 2 25566678899999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC------------------------CCHH
Q 007530 147 AKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE------------------------RNEV 202 (600)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~d~~ 202 (600)
+.+++.+-++++ -.||..-...+.+=+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 998877665543 245666667788888889999999888887752 3677
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYA 282 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 282 (600)
||-.+-.+|...+++.-|.-.--.+.- .|| ....++..|...|.+++-..+++..+... .....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 898888889888888766544333331 222 12334555677787877777777665322 346778888888888
Q ss_pred hhCCHHHHHHHHhcCC----Cc-------CHhHHHHHHHHHHhcCChHHHHH
Q 007530 283 KCGCVVDAYFVFSGIE----EK-------NVVLWNTMISGFSRHARSVEVMI 323 (600)
Q Consensus 283 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 323 (600)
|- ++++-.+-++... -| ....|.-++-.|.+..+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 3344444333222 12 45578888888888888887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.26 Score=39.26 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 424 AEIAAKQLFGME-P-DNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 424 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
+..+++.+++.+ | ..-.....|+-++.+.|++++|.+..+.+.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444454444433 2 122233345555555555555555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=2.5 Score=33.92 Aligned_cols=140 Identities=11% Similarity=0.029 Sum_probs=88.2
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHH
Q 007530 110 TTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDA 189 (600)
Q Consensus 110 ~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 189 (600)
.-.|..++..++..+..... +..-++.++.-....-+-+-..++++.+ |--.|. ..||++...
T Consensus 18 ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHH
Confidence 34566666666666665543 3344444444333333333333333222 211121 245666666
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 190 SRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 190 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
...+-.+.. +....+.-+.....+|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++.+.|++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666555543 334556677888899999999999888643 35788888889999999999999999999999998854
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=2.3 Score=34.49 Aligned_cols=91 Identities=9% Similarity=-0.039 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceE
Q 007530 402 DATASMWGSLLASCRNYR---NLELAEIAAKQLFGMEPDN-AGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKS 477 (600)
Q Consensus 402 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 477 (600)
.|+..+--.+..++.+.. +..++..+++.+....|.. -.....|+-+|.+.|++++|++..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 355555555555555543 3456777777777766642 2344567777888888888888877776543
Q ss_pred EEEEcCcccCcchHHHHHHHHHHHHHHHHCCCc
Q 007530 478 WVEIKGKRNHPRIAEIYSKLEKLVEEMKKLGYK 510 (600)
Q Consensus 478 ~~~i~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 510 (600)
|...++...-..+.++|.+.|++
T Consensus 108 ----------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ----------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------CCcHHHHHHHHHHHHHHHHhchh
Confidence 55556665555666677777764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.14 E-value=0.67 Score=35.61 Aligned_cols=65 Identities=14% Similarity=-0.067 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 007530 404 TASMWGSLLASCRNYRNLELAEIAAKQLFGME-------PDNAGNHLLLSNIYAANRRWEEVARARKLIRDS 468 (600)
Q Consensus 404 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 468 (600)
+..-+..+...+...++++.|..-++++++.. +..+..+..|+.+|.+.|++++|...++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998732 334567889999999999999999999988754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.22 Score=46.22 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHcC-CCCC--CHHHHHHHHHHHHH-cCChHHHHHHHHHHhcCCCC
Q 007530 375 HYSCMIDILGR-----AGLIHEAYDLILNM-PFDA--TASMWGSLLASCRN-YRNLELAEIAAKQLFGMEPD 437 (600)
Q Consensus 375 ~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p--~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~ 437 (600)
.|..|...|.+ -|+.++|.+.|++. .+.| +..++..+...++. .|+.+++.+.+++++..+|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44444444444 25555555555544 2333 24455555555555 36677777777777776665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.6 Score=49.88 Aligned_cols=54 Identities=15% Similarity=0.024 Sum_probs=50.5
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
..|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999999885
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.08 E-value=1.3 Score=36.31 Aligned_cols=38 Identities=8% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCCcchHHHHHHHHHcCCCh------hHHHHHHHHHHHcCCCCCCh
Q 007530 96 QRCIVSWNTIIGSYTTNGRE------QEAVALFINMLREGKTPYSE 135 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~p~~ 135 (600)
..|..+|=..+...-+.|++ ++..++|++.... +||+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDK 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccc
Confidence 34667777777777777887 7777888877776 67763
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.58 E-value=9.1 Score=35.97 Aligned_cols=169 Identities=8% Similarity=0.030 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHH----HHHHHHcCCCCCChhhHHHHHHH
Q 007530 69 LTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVAL----FINMLREGKTPYSEFTVSSVLCA 144 (600)
Q Consensus 69 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~p~~~t~~~ll~~ 144 (600)
..|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+...+.+ +++|......++..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 35666777888899999999887542 2345566777666664 44445556 88888888888887
Q ss_pred HhcCCChH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhC---
Q 007530 145 CAAKRDVF-ECKQLHVFALK----AA--MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQN--- 214 (600)
Q Consensus 145 ~~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~--- 214 (600)
+.....-+ .-..+...+++ .| ..-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+.+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 76643222 22344444443 22 2237788899999999999999999988633323566666665554444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 215 ELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 215 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
|...++--+. -..++ -|...+++..|..++....+
T Consensus 182 ~~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 4444432221 12222 23456777788777776543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.98 E-value=14 Score=40.38 Aligned_cols=299 Identities=12% Similarity=0.027 Sum_probs=137.7
Q ss_pred hcCChHHHHHHHccCCCC----Cc--chHHHHHHHHHcCCChhHHHHHHHHHHHcCC-CCCC---hhh--HHHHHHHHhc
Q 007530 80 KCGLISGARKVFDEMPQR----CI--VSWNTIIGSYTTNGREQEAVALFINMLREGK-TPYS---EFT--VSSVLCACAA 147 (600)
Q Consensus 80 ~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~p~---~~t--~~~ll~~~~~ 147 (600)
..|+.++++.+++.-... +. ..-..+.-|.+..|..+++++++...+.... +.-+ ... -..+.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 456667777777765431 11 1222333445666666677777766554320 0000 111 1112122222
Q ss_pred CCC-hHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHHcCCHHHHHHHHccCCC--C-CHHHHHHHHHHHHhCCCHHH
Q 007530 148 KRD-VFECKQLHVFALKAAMDRNVFV----GTALLDVYAKCGLISDASRVFESMPE--R-NEVTWSSMVAGFVQNELYEE 219 (600)
Q Consensus 148 ~~~-~~~a~~~~~~~~~~g~~~~~~~----~~~li~~y~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~ 219 (600)
.|. -+++...+..++... +..+ .-+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.+.
T Consensus 466 ~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred cCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 232 223444444444321 2111 12333344455666665655554322 1 22223334445556778777
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhc
Q 007530 220 ALILFRRAQVLGLEYNQFTIS---SVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSG 296 (600)
Q Consensus 220 A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 296 (600)
+..+.+.+.... .| ..-|. ++..+|+..|+.....+++..+.... ..++.-...+.-+....|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777776531 12 12222 23345667777777777777776542 22222222222233345666666666664
Q ss_pred CCC---cCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------CHHHHHHHHHHH
Q 007530 297 IEE---KNVVLWNTMISGFSRHARS-VEVMILFEKMQQAGLHPNEQTYISVLSACSHIG---------MVEKGKSYFDLM 363 (600)
Q Consensus 297 ~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~~~~~~ 363 (600)
+.+ +.+..--++.-|....|.. .+|++++..+.. .+|..+=...+.+....| ++...++.+...
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 442 2233233333344444443 467777777764 345444333333333222 233333333333
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcC
Q 007530 364 VKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 364 ~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
..+..-.++......+..++...|
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HhcccccHHHHHHHHHHHHHHhcC
Confidence 222222344555555555555555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.54 E-value=1.7 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHH
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHL 443 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 443 (600)
..-.|.-++.+.|+++.|.+.++.+++.+|++..+..
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445667888899999999999999999998865433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.37 E-value=1.3 Score=36.32 Aligned_cols=53 Identities=9% Similarity=-0.128 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 387 GLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 387 g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
++.++|.++|+.+ .. +.=...|......-.++|+++.|.+++.+++.+.|.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5555666665554 00 11167777777777888999999999999999888754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.76 E-value=9.6 Score=38.11 Aligned_cols=252 Identities=6% Similarity=-0.030 Sum_probs=124.6
Q ss_pred CCchhHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCC---CcchHHHHHHH----HHcCCC
Q 007530 47 RAPVRGKVCHAKIIGM-----GLNNDTLTSNILINFYSKCGLISGARKVFDEMPQR---CIVSWNTIIGS----YTTNGR 114 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~----~~~~g~ 114 (600)
+++..|.+.+-.+.+. .......+...++..|.+.|+++...+.+..+..+ -..+-..+++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4555555555444432 13344566777778888888887775555443321 11122222222 212222
Q ss_pred hhHH--HHHHHHHHH--cCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCC---hhHHHHHHHHHHH
Q 007530 115 EQEA--VALFINMLR--EGKTPY---SEFTVSSVLCACAAKRDVFECKQLHVFALKA--AMDRN---VFVGTALLDVYAK 182 (600)
Q Consensus 115 ~~~A--~~~~~~m~~--~g~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~y~~ 182 (600)
.+.. +.+.+.... .|.+-. .......+...+-..|++.+|..++..+... |.... +.++...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2211 111111110 110111 1112244566677778888888777776543 21111 3456667778888
Q ss_pred cCCHHHHHHHHccCCC--------CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH-----HHHH
Q 007530 183 CGLISDASRVFESMPE--------RN--EVTWSSMVAGFVQNELYEEALILFRRAQVL-GLEYNQFTISSV-----ICAC 246 (600)
Q Consensus 183 ~g~~~~A~~~f~~m~~--------~d--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l-----l~a~ 246 (600)
.+++..|..++.++.. ++ ..-+..++..+...+++.+|-+.|.+.... ....|...+..+ +...
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 8888888777665421 11 234566677777788888888777776432 111122222111 1111
Q ss_pred HccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhh--CCHHHHHHHHhcCCC
Q 007530 247 AGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKC--GCVVDAYFVFSGIEE 299 (600)
Q Consensus 247 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~--g~~~~A~~~~~~~~~ 299 (600)
......+ -..+.....+....++...+..|+.+|... .+++.+.+.|.....
T Consensus 270 La~~~~~-~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 270 LSPYGNL-QNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HSSCSST-THHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred hCCCCch-HHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 1111111 222222333333345666777788887654 356667777766544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.02 E-value=0.1 Score=51.77 Aligned_cols=378 Identities=12% Similarity=0.038 Sum_probs=191.0
Q ss_pred CHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHc
Q 007530 32 ELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTT 111 (600)
Q Consensus 32 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 111 (600)
|...|..++.++.+.|.+++-...+....+. ..++.+=+.|+-+|++.+++.+-.+++.. ||+.--..+.+-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHH
Confidence 5566889999999999999888777544443 45566778999999999987654443322 344333344444444
Q ss_pred CCChhHHHHHHHHHHHcC-------------------CCCCChhhHHHHHHHHhcCCChHHHH-----------------
Q 007530 112 NGREQEAVALFINMLREG-------------------KTPYSEFTVSSVLCACAAKRDVFECK----------------- 155 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g-------------------~~~p~~~t~~~ll~~~~~~~~~~~a~----------------- 155 (600)
.|.++.|.-+|..+..-. .--.+..||..+-.+|...+.+..|.
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv 236 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI 236 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGG
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHH
Confidence 444443333332221100 01124556666666666666555543
Q ss_pred -------------HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccC----CCC-------CHHHHHHHHHHH
Q 007530 156 -------------QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM----PER-------NEVTWSSMVAGF 211 (600)
Q Consensus 156 -------------~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m----~~~-------d~~~~~~li~~~ 211 (600)
.+++..+.. -......++-|.-.|+|-. .++-.+.++.. --| ....|.-++-.|
T Consensus 237 ~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY 314 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 314 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHH
Confidence 333322210 1224456666666666652 22222222221 112 334567777777
Q ss_pred HhCCCHHHHHHHHHHHHHc-----------C---CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 007530 212 VQNELYEEALILFRRAQVL-----------G---LEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSL 277 (600)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~-----------g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (600)
.+-.+++.|... |.+. . -.+|...|-..|.-|.... +..--.++..+ ...+.+ +-.
T Consensus 315 ~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL-~prlDh-----~Rv 384 (624)
T 3lvg_A 315 DKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVL-SPRLDH-----TRA 384 (624)
T ss_dssp HHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHH-CTTCCS-----TTT
T ss_pred hcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhc-cccCCh-----HHH
Confidence 776666665432 2111 0 0122233333333332211 00000111110 001111 123
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNT-MISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKG 356 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 356 (600)
++++.+.|++.-....+..+...|...-|- +-..|....++ .+...-+..|-+-..+..|
T Consensus 385 V~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy-------------------~~LR~SId~ydNFD~i~LA 445 (624)
T 3lvg_A 385 VNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY-------------------QALRTSIDAYDNFDNISLA 445 (624)
T ss_dssp HHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCC-------------------HHHHHTTSSCCCSCTTHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhH-------------------HHHHHHHHHhccccHHHHH
Confidence 445555555555555555555545444333 22333333333 2333333344444444444
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 357 KSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 357 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
.++ +++ +-.+.-..-...|.+.++++++..+.++=..-.| .+...+..|+.+.++.+++-.++.+-
T Consensus 446 ~rL-----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~ 511 (624)
T 3lvg_A 446 QRL-----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEK 511 (624)
T ss_dssp HHH-----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCS
T ss_pred HHH-----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 332 222 2333444455678889999998887665332222 23344567788888888887776443
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHH
Q 007530 437 DNAGNHLLLSNIYAANRRWEEVARA 461 (600)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~a~~~ 461 (600)
...+......|...=+.|-+.++
T Consensus 512 --~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 512 --RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --THHHHHHHHHTSSSSSCHHHHHH
T ss_pred --hHHHHHHHHHHhhccChHHHHHH
Confidence 34677777777777788877765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.20 E-value=18 Score=34.28 Aligned_cols=168 Identities=10% Similarity=0.052 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHH----HHHHHcCCCCCChhhHHHHHHHH
Q 007530 70 TSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALF----INMLREGKTPYSEFTVSSVLCAC 145 (600)
Q Consensus 70 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~p~~~t~~~ll~~~ 145 (600)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +...+.+ +++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 4455667788899999999886432 33455667776665554 4555567 888888888888887
Q ss_pred hcCCChH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHH
Q 007530 146 AAKRDVF-ECKQLHVFALK----AA--MDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYE 218 (600)
Q Consensus 146 ~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 218 (600)
.....-+ .-..+...+++ .| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 7665422 12233444433 33 34467788889999999999999999885322223356655555554444322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 007530 219 EALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCK 264 (600)
Q Consensus 219 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 264 (600)
++ |.+.-..++. |...+++..|..++....+
T Consensus 185 e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TA--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred cH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 22 2222223332 3446677777776655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.26 E-value=3.6 Score=32.92 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.+--|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444555555555555555555555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.90 E-value=3.8 Score=34.25 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC
Q 007530 378 CMIDILGRAGLIHEAYDLILNMP 400 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~ 400 (600)
-+..+|.+.|++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35556666666666666666664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.75 E-value=8.2 Score=28.87 Aligned_cols=86 Identities=8% Similarity=-0.087 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..++|..|-+.+...+- ...+--.-+......|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45556666555555442 333333444567788999999999999999999999888764 78888888888878877
Q ss_pred cCCCCCHHHHH
Q 007530 230 LGLEYNQFTIS 240 (600)
Q Consensus 230 ~g~~p~~~t~~ 240 (600)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.35 E-value=8.7 Score=28.78 Aligned_cols=86 Identities=10% Similarity=-0.061 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007530 150 DVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQV 229 (600)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (600)
..++|..|-+.+...+- ...+--.-+......|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45556666555555442 333333444566788999999999999999999999888764 67788888877777776
Q ss_pred cCCCCCHHHHH
Q 007530 230 LGLEYNQFTIS 240 (600)
Q Consensus 230 ~g~~p~~~t~~ 240 (600)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.13 E-value=44 Score=36.64 Aligned_cols=157 Identities=10% Similarity=-0.019 Sum_probs=73.6
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHhhCCHHHHHHHHhcCCC-cC-HhHHHH---HHHHHHhcCCh
Q 007530 246 CAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDM--YAKCGCVVDAYFVFSGIEE-KN-VVLWNT---MISGFSRHARS 318 (600)
Q Consensus 246 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--y~~~g~~~~A~~~~~~~~~-~~-~~~~~~---li~~~~~~g~~ 318 (600)
+...|+-+....++..+.+.. +..+...+.-+ ..-.|+.+.+..+.+.+.. .+ ..-|.+ +.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345566666666666655432 22222223222 3345666666655555432 22 222322 23345566676
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI-HEAYDLIL 397 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 397 (600)
.....++..+... ...+......+.-+....|+.+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 5555577776653 122222222222233344555555566655532 2245554444444444444443 45666666
Q ss_pred cCCCCCCHHHH
Q 007530 398 NMPFDATASMW 408 (600)
Q Consensus 398 ~m~~~p~~~~~ 408 (600)
.+...+|..+-
T Consensus 654 ~L~~D~d~~Vr 664 (963)
T 4ady_A 654 PLTKDPVDFVR 664 (963)
T ss_dssp HHHTCSSHHHH
T ss_pred HHccCCCHHHH
Confidence 66434454433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.60 E-value=21 Score=38.22 Aligned_cols=127 Identities=12% Similarity=-0.002 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCC-hHHHHHHHccCCCCCc--ch--HHHHHHHHHcCCC-hhHHHHHHHHHHHc------CCCCCChh
Q 007530 69 LTSNILINFYSKCGL-ISGARKVFDEMPQRCI--VS--WNTIIGSYTTNGR-EQEAVALFINMLRE------GKTPYSEF 136 (600)
Q Consensus 69 ~~~~~li~~y~~~g~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~~p~~~ 136 (600)
.....|+..+.-.|+ .+.|..+|+++...+. .+ ..++|..+.+.+. --+|++++.+.++. . .++...
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~-l~~~~~ 327 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND-LPPRDA 327 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT-CSSCCH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh-hccccc
Confidence 344555555555566 4778888887654322 22 2233443333332 23566666555431 1 222211
Q ss_pred -----------hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCC
Q 007530 137 -----------TVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMP 197 (600)
Q Consensus 137 -----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 197 (600)
....-...|...|+++.|..+-.+++...+. +-.+|..|...|.+.|+++.|.-.+..+|
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 2222345577789999999999999888543 77889999999999999999999999987
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.50 E-value=1.6 Score=42.97 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCccCCc
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD-----SEVKKEKS 475 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 475 (600)
..++.++...|+.+++...+..++..+|-+...+..|..+|.+.|+..+|.+.|+...+ .|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556667778888888888888888888888888888888888888888888877653 46665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.23 E-value=5.1 Score=30.19 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 317 RSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 317 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
+.-+...-++.+....+.|+.....+.+.||.+..++..|.++|+.+..+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 444666677777777889999999999999999999999999999996555433 446777664
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.12 E-value=11 Score=28.32 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=60.4
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 47 RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
..-++|.-|-+++...|- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345788888888877663 333333344567789999999999999999999999988775 5677777777777777
Q ss_pred HcC
Q 007530 127 REG 129 (600)
Q Consensus 127 ~~g 129 (600)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 776
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.92 E-value=10 Score=28.40 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=61.1
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 007530 47 RAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINML 126 (600)
Q Consensus 47 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
..-++|.-|-+++...|- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345778888888877663 333333344567789999999999999999999999988774 6788888888887887
Q ss_pred HcC
Q 007530 127 REG 129 (600)
Q Consensus 127 ~~g 129 (600)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 776
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.50 E-value=38 Score=38.51 Aligned_cols=165 Identities=8% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch
Q 007530 173 GTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAAL 252 (600)
Q Consensus 173 ~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 252 (600)
...++..+.+.|..+.|.++..-.+. +...--.+...|...|++++|.+.|++.. .|+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hh
Confidence 34566667777888888776655544 44444566778899999999999998752 12222111000 00
Q ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhhCCHHHHHHHHhc----CCCcC----HhHHHHHHHHHHhcCChHHHH
Q 007530 253 IQGKQVHAVLCKTG--FGSNMFAASSLVDMYAKCGCVVDAYFVFSG----IEEKN----VVLWNTMISGFSRHARSVEVM 322 (600)
Q Consensus 253 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~g~~~~A~ 322 (600)
.. ...+.... ...-..-|.-++..+.+.|.++.+.++-.. ....+ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00011100 011122344455555555555554443321 11111 125888888888999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 323 ILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 323 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
..+-.+.....+ ...+..++...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888887765433 4556667666666665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 600 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 32/238 (13%), Positives = 77/238 (32%), Gaps = 26/238 (10%)
Query: 273 AASSLVDMYAKCGCVVDAYFVFS---GIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQ 329
A S+L ++ G + A F ++ + + + + + + +
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 330 QAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLI 389
+ + ++ G+++ + ++ P+ Y + + L G +
Sbjct: 231 SLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSV 287
Query: 390 HEA--YDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447
EA A +L R N+E A ++ + P+ A H L++
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 448 IYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMK 505
+ + +E A + + R P A+ YS + ++EM+
Sbjct: 348 VLQQQGKLQE---ALMHYK---------------EAIRISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.91 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.9 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.56 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.29 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.17 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.92 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.91 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.13 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.38 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.57 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.5 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.59 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.42 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.2e-20 Score=186.23 Aligned_cols=369 Identities=12% Similarity=0.038 Sum_probs=251.8
Q ss_pred HHHhcCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHH
Q 007530 77 FYSKCGLISGARKVFDEMPQ--R-CIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFE 153 (600)
Q Consensus 77 ~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~ 153 (600)
.+.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|+..|++.++. .|.+..++..+..++...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhccccc
Confidence 34445555666555555431 2 3445555555566666666666666665554 23344555555666666666666
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 154 CKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESM---PERNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
|...+....+.... +..........+...+....+....... .......+..........+....+...+.+....
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 66666665555432 2233333333333333333332222211 1233444555555566666777777666666544
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHH
Q 007530 231 GLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNT 307 (600)
Q Consensus 231 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 307 (600)
. +-+...+..+...+...|.++.|...+..+++.. +.+...+..+...|...|++++|...|+... ..+...|..
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 2 2244555666666777777777777777777654 4456677778888888888888888887654 345677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 007530 308 MISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRA 386 (600)
Q Consensus 308 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 386 (600)
+...+.+.|++++|+..|++..+. .| +..++..+...+...|++++|.+.++...... +.+...+..+...+.+.
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHC
Confidence 888899999999999999998875 44 46778888889999999999999999886543 45677888889999999
Q ss_pred CCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 007530 387 GLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR 454 (600)
Q Consensus 387 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 454 (600)
|++++|.+.|++. ...|+ ..+|..+...+...|++++|...++++++++|+++..|..|+.+|.+.|+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999875 45554 67888999999999999999999999999999999999999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4e-20 Score=184.35 Aligned_cols=374 Identities=14% Similarity=0.069 Sum_probs=305.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcC
Q 007530 105 IIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCG 184 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 184 (600)
+...+.+.|++++|++.|+++.+. .|-+...+..+...+...|++++|...+..+++..+. +..++..+...|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhc
Confidence 345567889999999999999987 4667888999999999999999999999999998654 6788999999999999
Q ss_pred CHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 007530 185 LISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAV 261 (600)
Q Consensus 185 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 261 (600)
++++|...+....+ .+...+..........+....+........... .................+....+......
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 99999999987754 345555566666666677777776666665543 33444444555566777788888888877
Q ss_pred HHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 007530 262 LCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQ 338 (600)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 338 (600)
..... +.+...+..+...+...|+.++|...+++..+ .+..+|..+...+...|++++|+..+++..... ..+..
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 77765 55677888899999999999999999987653 467789999999999999999999999998864 44667
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM--PFDATASMWGSLLASCR 416 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 416 (600)
.+..+...+.+.|++++|...|+.+.+.. +-+...+..+...|...|++++|.+.++.. ..+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 78888899999999999999999987532 235678889999999999999999999876 23456788999999999
Q ss_pred HcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHH
Q 007530 417 NYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSK 496 (600)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 496 (600)
..|++++|...+++++++.|+++.++..++.+|...|++++|...+++..+.. |...+++..
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~------------------P~~~~a~~~ 378 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------------------PTFADAYSN 378 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC------------------TTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999887542 455556665
Q ss_pred HHHHHHHH
Q 007530 497 LEKLVEEM 504 (600)
Q Consensus 497 l~~l~~~m 504 (600)
+..++.+|
T Consensus 379 lg~~~~~~ 386 (388)
T d1w3ba_ 379 MGNTLKEM 386 (388)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.5e-13 Score=129.48 Aligned_cols=240 Identities=12% Similarity=-0.026 Sum_probs=166.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhC
Q 007530 206 SMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCG 285 (600)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g 285 (600)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34566778888888888888887652 2245667777777777788888887777777654 334555666666666666
Q ss_pred CHHHHHHHHhcCCCcCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007530 286 CVVDAYFVFSGIEEKNVV---LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDL 362 (600)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 362 (600)
++++|.+.++.....+.. .+....... ...+.......+..+...+...++...+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666655543211000 000000000 000000111122233345667788888888
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 363 MVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 363 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
..+..+-.++...+..+...+...|++++|...+++. ...| +..+|..+...+...|++++|.+.++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7765554556778888899999999999999999876 3334 5788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
++..++.+|.+.|++++|.+.+++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.2e-12 Score=123.33 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=192.7
Q ss_pred HHHHHHHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007530 175 ALLDVYAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAA 251 (600)
Q Consensus 175 ~li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 251 (600)
.....|.+.|++++|...|++..+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 466778999999999999998754 367799999999999999999999999988753 2356778888889999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007530 252 LIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQA 331 (600)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 331 (600)
+++|...+..+...... ............. ..+.......+..+...+...+|.+.|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999998875421 1111111000000 001111111222334456677888888887764
Q ss_pred C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 007530 332 G-LHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMW 408 (600)
Q Consensus 332 g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 408 (600)
. -.++...+..+...+...|++++|+..|+...+.. +-+...|..+...|.+.|++++|.+.|++. ...| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 3 23456778888888999999999999999987543 235678888999999999999999999876 3344 57789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH-----------HHHHHHHHhcCChHHHHH
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH-----------LLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a~~ 460 (600)
..+..+|...|++++|...++++++++|++...+ ..+..++...|+.+.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999888765533 345556666666654433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.1e-08 Score=96.65 Aligned_cols=257 Identities=12% Similarity=-0.016 Sum_probs=156.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHH
Q 007530 211 FVQNELYEEALILFRRAQVLGLEYN----QFTISSVICACAGLAALIQGKQVHAVLCKTG--FG---SNMFAASSLVDMY 281 (600)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~y 281 (600)
+...|++++|++++++........+ ...+..+..++...|++++|...+..+.+.. .. .....+..+...|
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4445555555555554443211000 1123333444445555555555555444321 00 0122334445555
Q ss_pred HhhCCHHHHHHHHhcCCC-------c----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHH
Q 007530 282 AKCGCVVDAYFVFSGIEE-------K----NVVLWNTMISGFSRHARSVEVMILFEKMQQAGL----HPNEQTYISVLSA 346 (600)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a 346 (600)
...|++..|...+..... + ....+..+...+...|+++.+...+........ .....++......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 666666666655543321 1 123445566677788888888888888776421 2224455566666
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCC---c--cHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-----CCHHHHHHHHHHH
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVL---P--NVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-----ATASMWGSLLASC 415 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~ 415 (600)
+...++...+...+........-. + ....+..+...+...|++++|...+++. ... .....+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 777888888888877664432211 1 1234556667788899999999998876 211 1245667788889
Q ss_pred HHcCChHHHHHHHHHHhc------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 416 RNYRNLELAEIAAKQLFG------MEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
...|++++|...+++++. ..|.....+..++.+|...|++++|.+.+++..+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999874 4455667888999999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3e-08 Score=94.11 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=131.9
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 007530 251 ALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KN-VVLWNTMISGFSRHARSVEVMILFE 326 (600)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~ 326 (600)
..+.+..+++..++...+.+...+..++..+.+.|+++.|..+|+++.+ .+ ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4567778888887765566677778888888888888888888877543 22 3468888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC----CC
Q 007530 327 KMQQAGLHPNEQTYISVLS-ACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM----PF 401 (600)
Q Consensus 327 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 401 (600)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88775422 2333333222 2344578888888888887643 334567788888888888888888888764 33
Q ss_pred CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCc
Q 007530 402 DAT--ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNA 439 (600)
Q Consensus 402 ~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 439 (600)
.|+ ...|...+..-..+|+.+.+..+.+++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 332 45788888877788888888888888877666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=9.6e-08 Score=91.87 Aligned_cols=86 Identities=16% Similarity=0.067 Sum_probs=42.8
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCCh-----hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----ChhHHHHH
Q 007530 107 GSYTTNGREQEAVALFINMLREGKTPYSE-----FTVSSVLCACAAKRDVFECKQLHVFALKAAMDR-----NVFVGTAL 176 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~~g~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~l 176 (600)
..+...|++++|+++|++.++. .|.+. ..+..+..++...|++++|...+..+++..... ....+..+
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4455667777777777766654 22221 234444555555666666666666555432110 11223334
Q ss_pred HHHHHHcCCHHHHHHHHc
Q 007530 177 LDVYAKCGLISDASRVFE 194 (600)
Q Consensus 177 i~~y~~~g~~~~A~~~f~ 194 (600)
...|...|++..|...+.
T Consensus 98 ~~~~~~~~~~~~a~~~~~ 115 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQE 115 (366)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1.4e-08 Score=93.59 Aligned_cols=199 Identities=9% Similarity=-0.077 Sum_probs=115.4
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHh
Q 007530 238 TISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSR 314 (600)
Q Consensus 238 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 314 (600)
++..+..++.+.|++++|...|...++.. +.+..+++.+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444555566666666666666666553 44566666677777777777777777766553 345567777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----CHH
Q 007530 315 HARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG----LIH 390 (600)
Q Consensus 315 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~ 390 (600)
.|++++|++.|++..+.. +.+......+..++.+.+..+....+....... .++...++ ++..+.... ..+
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 888888888888877753 223444334444445555555555555544321 12211222 222222111 122
Q ss_pred HHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchH
Q 007530 391 EAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNH 442 (600)
Q Consensus 391 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 442 (600)
.+...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222222211 11222 34677788888999999999999999999999875443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=4.6e-08 Score=92.75 Aligned_cols=211 Identities=8% Similarity=-0.001 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc--------------CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 116 QEAVALFINMLREGKTPYSEFTVSSVLCACAA--------------KRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 116 ~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~--------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
+.+..+|++++.. .+.+...|..-+..+.. .+..+.+..+++..++...+.+...+...+..+.
T Consensus 33 ~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3455566666665 34444444443332211 1223556666766666544445566666777777
Q ss_pred HcCCHHHHHHHHccCCC--C-C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCchHHHH
Q 007530 182 KCGLISDASRVFESMPE--R-N-EVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVIC-ACAGLAALIQGK 256 (600)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~ 256 (600)
+.|+++.|..+|+.+.+ + + ...|...+....+.|+.++|.++|.++...+.. +...|..... -+...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 77777777777766533 1 2 335666677777777777777777776654322 2222222222 223345666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCC-------cCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007530 257 QVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEE-------KNVVLWNTMISGFSRHARSVEVMILFEKMQ 329 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 329 (600)
.+++.+++.. +.+...+...++.+.+.|+++.|+.+|++... .....|...+.--..+|+.+.+..+++++.
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666542 34455555555555555555555555554321 112345555444444555555555555443
Q ss_pred H
Q 007530 330 Q 330 (600)
Q Consensus 330 ~ 330 (600)
+
T Consensus 269 ~ 269 (308)
T d2onda1 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.1e-08 Score=92.63 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007530 203 TWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQ-FTISSVICACAGLA-ALIQGKQVHAVLCKTGFGSNMFAASSLVDM 280 (600)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (600)
.|+.+...+.+.+.+++|++++++..+. .|+. ..|.....++...| ++++|...+..+++..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-------------- 108 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 108 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--------------
Confidence 4555555666666666666666666653 3332 23344443444433 2444444444444432
Q ss_pred HHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007530 281 YAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYF 360 (600)
Q Consensus 281 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 360 (600)
..+..+|+.+...+.+.|++++|++.++++.+.. +-+...|..+...+.+.|++++|++.+
T Consensus 109 ------------------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~ 169 (315)
T d2h6fa1 109 ------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV 169 (315)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred ------------------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2345566666666666666777777777766642 224566666666677777777777777
Q ss_pred HHHHHhcCCCc-cHHHHHHHHHHHHhcCC------HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007530 361 DLMVKQHNVLP-NVFHYSCMIDILGRAGL------IHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQL 431 (600)
Q Consensus 361 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 431 (600)
+.+++. .| +...|+.+..++.+.+. +++|.+.+.+. ...| +...|..+...+. ....+++...++++
T Consensus 170 ~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~ 245 (315)
T d2h6fa1 170 DQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQL 245 (315)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHH
T ss_pred HHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHH
Confidence 776643 23 44455555555555443 45666666554 2334 5677777665544 34467788888888
Q ss_pred hcCCCCCcc--hHHHHHHHHHh
Q 007530 432 FGMEPDNAG--NHLLLSNIYAA 451 (600)
Q Consensus 432 ~~~~p~~~~--~~~~l~~~~~~ 451 (600)
.++.|+... .+..++.+|..
T Consensus 246 ~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 246 LDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHhCCCcCCHHHHHHHHHHHHH
Confidence 887776433 44456666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=6.1e-08 Score=92.06 Aligned_cols=127 Identities=9% Similarity=-0.011 Sum_probs=71.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 007530 101 SWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR-DVFECKQLHVFALKAAMDRNVFVGTALLDV 179 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 179 (600)
.|+.+-..+.+.+.+++|+++++++++.. |-+...|+....++...+ ++++|...++.+++..+. +..+|+.+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 34445555555566666666666666642 334445555555555543 356666666666555433 45555555566
Q ss_pred HHHcCCHHHHHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 180 YAKCGLISDASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 180 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
+.+.|++++|+..|+.+.+ .+..+|+.+...+.+.|++++|++.|+++.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666555543 34555666666666666666666666665553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=4.2e-09 Score=101.49 Aligned_cols=166 Identities=7% Similarity=-0.062 Sum_probs=105.6
Q ss_pred HHHHhhCCHHHHHHHHhcCCC---cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 007530 279 DMYAKCGCVVDAYFVFSGIEE---KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEK 355 (600)
Q Consensus 279 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 355 (600)
..+...|..++|...++...+ .+..+|+.+...+.+.|++++|...+.+..+. .|+.. .+...+...+..++
T Consensus 152 ~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~ 226 (334)
T d1dcea1 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQ 226 (334)
T ss_dssp HHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCS
T ss_pred HHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhH
Confidence 444455666666666655543 24556666666666666666655544433331 12211 12223344455666
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 007530 356 GKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFG 433 (600)
Q Consensus 356 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 433 (600)
+...+....... +++...+..+...+...|+.++|...+.+. +..|+ ..+|..+...+...|++++|...++++++
T Consensus 227 a~~~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 227 SAWFYHRWLLGR--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666665332 233445555666777778888888888765 44453 56788888888899999999999999999
Q ss_pred CCCCCcchHHHHHHHHHh
Q 007530 434 MEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~ 451 (600)
++|++...|..|...+.-
T Consensus 305 ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 305 VDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HCGGGHHHHHHHHHHHHH
T ss_pred HCcccHHHHHHHHHHHhH
Confidence 999888888877776653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.9e-08 Score=92.71 Aligned_cols=194 Identities=10% Similarity=-0.011 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHhcCC---CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 007530 271 MFAASSLVDMYAKCGCVVDAYFVFSGIE---EKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHP-NEQTYISVLSA 346 (600)
Q Consensus 271 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 346 (600)
..++..+...|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|+..|++..+. .| +..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 3466678899999999999999999876 357889999999999999999999999999985 44 45678888889
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHH----cCCh
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDATASMWGSLLASCRN----YRNL 421 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~----~~~~ 421 (600)
+...|++++|...|+..++.. +.+......+...+.+.+..+.+..+.... ...++...+. ++..+.. .+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHH
Confidence 999999999999999997643 224444444444555566555554444332 1112222222 1222211 1223
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
+.+...+.......|..+.++..++..|...|++++|.+.++...+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 333333333334556666788889999999999999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=1.7e-07 Score=89.85 Aligned_cols=214 Identities=10% Similarity=-0.010 Sum_probs=135.0
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHHcCCHHH
Q 007530 112 NGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKR--DVFECKQLHVFALKAAMDRNVFVGT-ALLDVYAKCGLISD 188 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~ 188 (600)
.|++++|+.+|+...+. .|-+...+..+..++...+ +.+++...+..+++..+. +...+. .....+...|..++
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 34567888888888876 3556666766666666554 467888888888887543 444443 44567777888899
Q ss_pred HHHHHccCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 007530 189 ASRVFESMPE---RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKT 265 (600)
Q Consensus 189 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 265 (600)
|...++...+ .+..+|+.+...+.+.|++++|...+.+.... .|+. ......+...+..+.+...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 9988888776 36778888888888888888776655543332 1211 12223334455566666666666554
Q ss_pred CCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007530 266 GFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKN---VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN 336 (600)
Q Consensus 266 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 336 (600)
. +++...+..+...+...|+.++|...|.+..+.+ ..+|..+...|...|+.++|++.+++..+ +.|+
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~ 308 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 308 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGG
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcc
Confidence 3 3444455555666666666666666666655433 24455555566666666666666666665 3454
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=5.6e-07 Score=78.88 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 007530 371 PNVFHYSCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNI 448 (600)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 448 (600)
|+...+......|.+.|++++|+..|++. ... .++..|..+..+|...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33333444444555555555555555443 112 2455566666666666666666666666666666666666666666
Q ss_pred HHhcCChHHHHHHHHHhh
Q 007530 449 YAANRRWEEVARARKLIR 466 (600)
Q Consensus 449 ~~~~g~~~~a~~~~~~m~ 466 (600)
|...|++++|...++...
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.4e-06 Score=71.78 Aligned_cols=141 Identities=11% Similarity=-0.016 Sum_probs=98.4
Q ss_pred HHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007530 278 VDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGK 357 (600)
Q Consensus 278 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 357 (600)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778888888888888888888888888888888888888888888888753 234667777888888888888888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Q 007530 358 SYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 358 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 436 (600)
..|++.++.. +++.. + .|...| +..+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~~--~~n~~-----~-~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQL--RGNQL-----I-DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTT--TTCSE-----E-ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhC--ccCch-----H-HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888775321 11100 0 000000 011111 24556677778888888888888888888887
Q ss_pred CC
Q 007530 437 DN 438 (600)
Q Consensus 437 ~~ 438 (600)
+.
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.3e-06 Score=68.89 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=52.7
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 007530 381 DILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEV 458 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 458 (600)
..+.+.|++++|...|++. ... .+...|..+..++...|++++|+..+.++++++|+++..|..++.+|...|++++|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 3445555666665555554 112 24555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhhC
Q 007530 459 ARARKLIRDS 468 (600)
Q Consensus 459 ~~~~~~m~~~ 468 (600)
...++...+.
T Consensus 91 ~~~~~~a~~~ 100 (117)
T d1elwa_ 91 KRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.7e-06 Score=68.22 Aligned_cols=105 Identities=15% Similarity=0.094 Sum_probs=83.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCh
Q 007530 344 LSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNL 421 (600)
Q Consensus 344 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~ 421 (600)
...+...|++++|+..|+.+++.. +-+...|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 456677788888888888887543 335667888888888888888888888776 22 34678899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 422 ELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 422 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
++|+..++++++++|+++..+..+.++-+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999888877776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=3.7e-06 Score=78.39 Aligned_cols=190 Identities=11% Similarity=-0.015 Sum_probs=124.8
Q ss_pred HHHHHHhhCCHHHHHHHHhcCCC-----c----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHHH
Q 007530 277 LVDMYAKCGCVVDAYFVFSGIEE-----K----NVVLWNTMISGFSRHARSVEVMILFEKMQQA----GL-HPNEQTYIS 342 (600)
Q Consensus 277 l~~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~ 342 (600)
....|..+|++++|.+.|.+..+ . -..+|+.+...|.+.|++++|++.+++..+. |- .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35567777777777777765542 1 1357788888888999999999988876542 11 111345556
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHHhc---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC----CH-HHH
Q 007530 343 VLSACS-HIGMVEKGKSYFDLMVKQH---NVLP-NVFHYSCMIDILGRAGLIHEAYDLILNM----PFDA----TA-SMW 408 (600)
Q Consensus 343 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~-~~~ 408 (600)
+...|. ..|++++|.+.++...+.. +..+ -..++..+...|.+.|++++|.+.|++. +..+ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998875422 2122 2346778889999999999999999875 1111 11 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHHhh
Q 007530 409 GSLLASCRNYRNLELAEIAAKQLFGMEPDNAG-----NHLLLSNIYAA--NRRWEEVARARKLIR 466 (600)
Q Consensus 409 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m~ 466 (600)
...+..+...++++.|...+++..+++|..+. ....++.+|.. .+++++|...++.+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 44555667789999999999999999886433 23445556554 356888888775443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=4.8e-06 Score=77.59 Aligned_cols=215 Identities=8% Similarity=-0.055 Sum_probs=123.1
Q ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 007530 185 LISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVL----GLEYN-QFTISSVICACAGLAALIQGKQVH 259 (600)
Q Consensus 185 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 259 (600)
++++|..+ |......|...|++++|++.|.+..+. +-+++ ..+|..+...|.+.|++++|...+
T Consensus 32 ~~~~Aa~~-----------y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADL-----------CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHH-----------HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHH-----------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 45666655 445678888889999998888877542 11111 235555666666666666666665
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHc----CCC
Q 007530 260 AVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFS-RHARSVEVMILFEKMQQA----GLH 334 (600)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~----g~~ 334 (600)
....+. +.+.|+...+ ..++..+...|. ..|++++|++.+++..+. +..
T Consensus 101 ~~a~~~---------------~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~ 154 (290)
T d1qqea_ 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (290)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhHH---------------hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 554431 2222222221 233444444553 357777777777766432 111
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----c-HHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC---
Q 007530 335 PN-EQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP----N-VFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT--- 404 (600)
Q Consensus 335 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--- 404 (600)
+. ..++..+...+...|++++|...|+.+.+...-.+ . ...+..++..+...|+++.|...+++. .+.|.
T Consensus 155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~ 234 (290)
T d1qqea_ 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence 11 23566677778888888888888888765322221 1 122344455566778888888888776 22232
Q ss_pred ---HHHHHHHHHHHHH--cCChHHHHHHHHHHhcCCC
Q 007530 405 ---ASMWGSLLASCRN--YRNLELAEIAAKQLFGMEP 436 (600)
Q Consensus 405 ---~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~p 436 (600)
......++.++.. .+.+++|...++++.+++|
T Consensus 235 sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 2344556666554 2346777777776666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=1.4e-06 Score=76.14 Aligned_cols=115 Identities=7% Similarity=-0.110 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHH
Q 007530 335 PNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDAT-ASMWGSLL 412 (600)
Q Consensus 335 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 412 (600)
|+...+......+.+.|++++|+..|..+++.. +.+...|..+..+|.+.|++++|...|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 666667777777888888888888888776542 335667777888888888888888888776 45564 67888888
Q ss_pred HHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 007530 413 ASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA 451 (600)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 451 (600)
.++...|++++|...++++++++|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 888889999999999999888877655444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6.1e-06 Score=69.02 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=88.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 007530 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRN 420 (600)
Q Consensus 343 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 420 (600)
-.+.|.+.|++++|...|+++++.. +-+...|..+..+|...|++++|.+.|++. ...| +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 3456677888888888888887542 235677788888888888888888888876 3334 56789999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHH--HhcCChHHHHHH
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIY--AANRRWEEVARA 461 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 461 (600)
+++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988777766554 333445555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=5.2e-06 Score=69.49 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 007530 378 CMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRW 455 (600)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 455 (600)
.....|.+.|++++|...|++. ... .+...|..+...+...|++++|...++++++++|++..++..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3455688999999999999987 333 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCC
Q 007530 456 EEVARARKLIRDSE 469 (600)
Q Consensus 456 ~~a~~~~~~m~~~~ 469 (600)
++|...++......
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=1.2e-06 Score=68.55 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=76.7
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 007530 379 MIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWE 456 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 456 (600)
+...+.+.|++++|...|++. ...| ++..|..+..++...|++++|+..++++++++|+++.++..++.+|...|+++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 455677888888888888876 3344 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007530 457 EVARARKLI 465 (600)
Q Consensus 457 ~a~~~~~~m 465 (600)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.5e-05 Score=68.79 Aligned_cols=140 Identities=12% Similarity=-0.074 Sum_probs=92.5
Q ss_pred HHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHH
Q 007530 76 NFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECK 155 (600)
Q Consensus 76 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (600)
..+...|+++.|++.|+++..++..+|..+..+|...|++++|++.|++.++.. |.+...|..+..++...|++++|.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHHHH
Confidence 345567888888888888887888888888888888888888888888888763 556777777888888888888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007530 156 QLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPE-RNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEY 234 (600)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 234 (600)
..|+.+++.........|. ..|. ..+ ....++..+...|.+.|++++|.+.|.+.......|
T Consensus 91 ~~~~kAl~~~~~n~~~~~~-------~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYK-------ILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHTTTTCSEEECG-------GGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHhCccCchHHHH-------Hhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8777776542111100000 0000 000 012345566667778888888888887766544333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3.9e-06 Score=66.39 Aligned_cols=107 Identities=17% Similarity=0.023 Sum_probs=79.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHcC-CCCCCH---HHHHHHHH
Q 007530 341 ISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL---IHEAYDLILNM-PFDATA---SMWGSLLA 413 (600)
Q Consensus 341 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~---~~~~~ll~ 413 (600)
..+++.+...+++++|++.|+...+.. +.+..++..+..++.+.++ +++|..+++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 356777778888888888888887542 3356677777777776554 44688888775 333432 37788999
Q ss_pred HHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 007530 414 SCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIY 449 (600)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 449 (600)
+|...|++++|++.++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999887666554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.7e-05 Score=66.97 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.|+.+..+|.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5666778888899999998888776 3344 6788888999999999999999999999999999988888888877666
Q ss_pred CChHHH
Q 007530 453 RRWEEV 458 (600)
Q Consensus 453 g~~~~a 458 (600)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.3e-05 Score=66.16 Aligned_cols=112 Identities=7% Similarity=-0.061 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNY 418 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 418 (600)
.+......+.+.|++++|+..|...++..+..+.... .-...... -...+|+.+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~----~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQA----LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhch----hHHHHHHHHHHHHHhh
Confidence 3444555677778888888888777643322221000 00000000 0124577788889999
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.7e-06 Score=64.99 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHhcCCCCC--cchHHHHHHHH
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNY---RNLELAEIAAKQLFGMEPDN--AGNHLLLSNIY 449 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 449 (600)
..++..+...+++++|++.|++. .. +.++.++..+..++... +++++|..+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45777888899999999999987 33 34678888888888764 45567999999999988764 34788999999
Q ss_pred HhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHHHHHHHHHHHHH
Q 007530 450 AANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYSKLEKLVEEMKK 506 (600)
Q Consensus 450 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~m~~ 506 (600)
.+.|++++|.+.++++.+.. |...++......+.+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~------------------P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE------------------PQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHHcC
Confidence 99999999999999998644 5566666665566655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=4.1e-05 Score=63.23 Aligned_cols=128 Identities=10% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP---NVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASC 415 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 415 (600)
.+..-...+.+.|++++|+..|..+++.....+ +....... . .....+|..+..++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-----------------~----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-----------------K----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-----------------H----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-----------------h----hHHHHHHhhHHHHH
Confidence 444455666777777777777777654221111 11100000 0 01134667788888
Q ss_pred HHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCceEEEEEcCcccCcchHHHHH
Q 007530 416 RNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVKKEKSKSWVEIKGKRNHPRIAEIYS 495 (600)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 495 (600)
...|++++|...++++++++|.+..+|..++.+|...|++++|...|+...+.+ |...++..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~------------------P~n~~~~~ 139 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN------------------PNNLDIRN 139 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------------------TTCHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHH
Confidence 899999999999999999999999999999999999999999999998877543 45555665
Q ss_pred HHHHHHHHHH
Q 007530 496 KLEKLVEEMK 505 (600)
Q Consensus 496 ~l~~l~~~m~ 505 (600)
.+..+..+++
T Consensus 140 ~l~~~~~kl~ 149 (153)
T d2fbna1 140 SYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.01 E-value=0.0017 Score=58.56 Aligned_cols=224 Identities=10% Similarity=-0.027 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 007530 200 NEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAG----LAALIQGKQVHAVLCKTGFGSNMFAAS 275 (600)
Q Consensus 200 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 275 (600)
|+..+..+...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 44566666667777788888888888777665 33333333333332 234455555555544443
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCCCcCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 007530 276 SLVDMYAKCGCVVDAYFVFSGIEEKNVVLWNTMISGFSR----HARSVEVMILFEKMQQAGLHPNEQTYISVLSACS--- 348 (600)
Q Consensus 276 ~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--- 348 (600)
+...+..+...+.. ..+.+.|...++...+.|..+ ....+...+.
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCC
Confidence 12222222222221 345566666666666654321 1111211111
Q ss_pred -ccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cC
Q 007530 349 -HIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGR----AGLIHEAYDLILNMPFDATASMWGSLLASCRN----YR 419 (600)
Q Consensus 349 -~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~ 419 (600)
.......+...+..... ..+...+..|...|.. ..+...+..+++......+......|...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 23455566666655532 2344555666666654 34566666666655323466666666655554 56
Q ss_pred ChHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 007530 420 NLELAEIAAKQLFGMEPDNAGNHLLLSNIYAA----NRRWEEVARARKLIRDSE 469 (600)
Q Consensus 420 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 469 (600)
+++.|...++++.+.+ ++..+..|+.+|.. ..+.++|.+.|++..+.|
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 8999999999998875 46688889999876 347889999999888776
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=7.4e-05 Score=62.76 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 007530 375 HYSCMIDILGRAGLIHEAYDLILNM-PF-DATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAAN 452 (600)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 452 (600)
.|..+..+|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4556777788888888888888776 22 346788888888999999999999999999999999888888777776665
Q ss_pred CChHH-HHHHHHHh
Q 007530 453 RRWEE-VARARKLI 465 (600)
Q Consensus 453 g~~~~-a~~~~~~m 465 (600)
+...+ ..+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 54432 33444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=5.7e-05 Score=63.55 Aligned_cols=112 Identities=7% Similarity=-0.011 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Q 007530 339 TYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDA-TASMWGSLLASCRN 417 (600)
Q Consensus 339 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 417 (600)
.+......+...|++++|++.|.++++.. +. ........+. ....| +...|..+..++..
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~~----------~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADG------AKLQPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHH------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hh----------hhhhhhhHHH------HHhChhhHHHHHHHHHHHHh
Confidence 34455556677788888888777665310 00 0000111110 01122 34567778888888
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.|++++|+..+.++++++|+++.+|..++.+|...|++++|...++...+..
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998887643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0044 Score=57.45 Aligned_cols=281 Identities=11% Similarity=0.032 Sum_probs=148.5
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 007530 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212 (600)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~ 212 (600)
||..-...+..-|.+.|.++.|..++..+ .-|..++..|.+.+++..|.+++.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 45555666777777777777777777532 23566777777788888877777654 35667777777777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhhCCHHHHHH
Q 007530 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFGSNMFAASSLVDMYAKCGCVVDAYF 292 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 292 (600)
+.....-| .+.......+......++..|-..|.++....++...... -..+..+++-++..|++.+. ++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHH
Confidence 77665443 2222333445556667777777888888777777766543 24566677778888877653 33333
Q ss_pred HHhcCCC-c----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007530 293 VFSGIEE-K----------NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFD 361 (600)
Q Consensus 293 ~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 361 (600)
.+..... - ....|.-++-.|.+.|++++|+.+.-. . .|+..-....+..+.+..+.+...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 3332211 1 112244455555555665555544322 1 2222223334445556666665555555
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 362 LMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 362 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
..... .|+ ..+.|+......-+..+..+.+++ .+++......++...+.+ +...
T Consensus 229 ~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k-------------------~~~l~li~p~Le~v~~~n--~~~v 282 (336)
T d1b89a_ 229 FYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSK-------------------VKQLPLVKPYLRSVQNHN--NKSV 282 (336)
T ss_dssp HHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHH-------------------TTCTTTTHHHHHHHHTTC--CHHH
T ss_pred HHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHHh-------------------cCCcHHHHHHHHHHHHcC--hHHH
Confidence 44422 243 334444444444455555554444 344444555555544322 3457
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 007530 442 HLLLSNIYAANRRWEEVARAR 462 (600)
Q Consensus 442 ~~~l~~~~~~~g~~~~a~~~~ 462 (600)
+..|..+|...++++.-++..
T Consensus 283 n~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHH
Confidence 778888888888865544433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.91 E-value=0.0024 Score=57.49 Aligned_cols=91 Identities=7% Similarity=-0.093 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHH
Q 007530 99 IVSWNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAA----KRDVFECKQLHVFALKAAMDRNVFVGT 174 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (600)
+..+..|-..+.+.|++++|++.|++..+.| |...+..|...+.. ..+...+...+....+.+ +.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 4455666666667777777777777777666 44555555555544 446666666666666554 233333
Q ss_pred HHHHHHHH----cCCHHHHHHHHccC
Q 007530 175 ALLDVYAK----CGLISDASRVFESM 196 (600)
Q Consensus 175 ~li~~y~~----~g~~~~A~~~f~~m 196 (600)
.|...+.. ..+.+.|...++..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a 100 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKA 100 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhh
Confidence 44444332 23455555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=4.2e-05 Score=64.44 Aligned_cols=132 Identities=9% Similarity=0.032 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHH
Q 007530 304 LWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDI 382 (600)
Q Consensus 304 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 382 (600)
.+......+...|++++|++.|.+..+. ............. ..+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHH
Confidence 3455566788999999999999887642 0100001111111 01122 45567778889
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 007530 383 LGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEE 457 (600)
Q Consensus 383 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 457 (600)
|.+.|++++|+..+++. .+.| ++..|..+..++...|+++.|...++++++++|+++.++..+..++.......+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 4455 578999999999999999999999999999999999888888877665544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.86 E-value=4.8e-05 Score=58.94 Aligned_cols=91 Identities=14% Similarity=-0.124 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 007530 102 WNTIIGSYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYA 181 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 181 (600)
+-.+...+.+.|++++|+..|++.+... |-+..+|..+..++...|++++|...+..+++..+. +..++..+...|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHH
Confidence 3445556677788888888888877763 446677777777777778888888777777777544 5667777777777
Q ss_pred HcCCHHHHHHHHcc
Q 007530 182 KCGLISDASRVFES 195 (600)
Q Consensus 182 ~~g~~~~A~~~f~~ 195 (600)
..|++++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777777664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=5.9e-06 Score=83.37 Aligned_cols=145 Identities=11% Similarity=-0.075 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCCHHHHHHH
Q 007530 319 VEVMILFEKMQQAGLHPNEQTYISVLSAC--SHIGMVEKGKSYFDLMVKQHNVLP-NVFHYSCMIDILGRAGLIHEAYDL 395 (600)
Q Consensus 319 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 395 (600)
..+++.++...+....|+..-....+..+ ...+.++.++..+... +++.| +...+..+...+.+.|+.++|...
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 44556666555443333322222111111 1223344444333322 23333 344556666666777777777665
Q ss_pred HHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 396 ILNMPFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 396 ~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+++.- .++ ..++..+...+...+++++|...++++++++|+++..|..|+.+|...|+..+|...+.+...
T Consensus 143 ~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 143 QSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54431 111 245666777777788888888888888888888888888888888888888888877776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.81 E-value=0.0002 Score=59.98 Aligned_cols=113 Identities=8% Similarity=-0.029 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 007530 338 QTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRN 417 (600)
Q Consensus 338 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 417 (600)
..+......+.+.|++++|...|+..+......+... .+. ...... -...+|..+..++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------------EKE-SKASES----FLLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHH-HHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc--------------hhh-hhhcch----hHHHHHHhHHHHHHH
Confidence 4455556666677777777777766553221111100 000 000000 012356667788899
Q ss_pred cCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 418 YRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
.|++++|+..++++++++|++...|..++.+|...|++++|...++...+.+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999987643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.013 Score=54.14 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=107.9
Q ss_pred CCCCCHhHHHHHHHHHhccCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHH
Q 007530 28 ANATELSTLQATLQSCARERAPVRGKVCHAKIIGMGLNNDTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIG 107 (600)
Q Consensus 28 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 107 (600)
-..||..-...+..-|-..|.++.|..++..+. -|..++..|.+.+++..|.+++... .+..+|..+..
T Consensus 9 l~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~ 77 (336)
T d1b89a_ 9 INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCF 77 (336)
T ss_dssp TTCC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred HcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHH
Confidence 344566667778888889999999999887542 3677888888999999999988765 46678999999
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHH
Q 007530 108 SYTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLIS 187 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 187 (600)
.+.+.....-| .+.... ...++.....++..+-..|..++...+++..+.. -..+..+++-++..|++.+. +
T Consensus 78 ~l~~~~e~~la-----~i~~~~-~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHhCcHHHHH-----HHHHHH-hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H
Confidence 98887766543 222233 3446666778889999999999988888877643 24567788899999998764 3
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007530 188 DASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRA 227 (600)
Q Consensus 188 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (600)
+-.+.+..... ......++..|-+.+.+.++.-++.++
T Consensus 150 kl~e~l~~~s~--~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 150 KMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHhccc--cCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 33333333221 122233444444555555544444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=0.00019 Score=59.05 Aligned_cols=128 Identities=9% Similarity=-0.088 Sum_probs=92.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 007530 302 VVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMID 381 (600)
Q Consensus 302 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 381 (600)
...+......+.+.|++.+|+..|.+....- |.. ....-........ .....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~--------~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKK--------NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhh--------hHHHHHHhhHHH
Confidence 4567777888999999999999999988631 110 0000000000001 012346777888
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 007530 382 ILGRAGLIHEAYDLILNM-PFDA-TASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYA 450 (600)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 450 (600)
+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999999876 3344 68899999999999999999999999999999999887776665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=5.1e-05 Score=60.44 Aligned_cols=91 Identities=7% Similarity=-0.020 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc-------hHHHHHH
Q 007530 377 SCMIDILGRAGLIHEAYDLILNM-PFD-ATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG-------NHLLLSN 447 (600)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~ 447 (600)
..+...|.+.|++++|.+.|++. ... .+...|..+..++...|+++.|...++++++++|+++. +|..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34556677777888887777665 223 35778888999999999999999999999998887665 4556777
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 007530 448 IYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 448 ~~~~~g~~~~a~~~~~~m~~ 467 (600)
.+...+++++|.+.++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 78888899999999877653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=0.0002 Score=60.47 Aligned_cols=111 Identities=11% Similarity=-0.036 Sum_probs=80.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-H-HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 007530 343 VLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGL-I-HEAYDLILNMPFDATASMWGSLLASCRNYRN 420 (600)
Q Consensus 343 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~-~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~ 420 (600)
........|++++|.+.|...+.-+.-.+-.. + ..+. . .++..+ +. .....+..+...+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQFVEPFATAL-VE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHCCC
Confidence 34566778999999999988874332111000 0 0000 0 111111 11 124567888999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 421 LELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
+++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0011 Score=52.22 Aligned_cols=93 Identities=6% Similarity=-0.017 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-----HHHHHHH
Q 007530 305 WNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-----VFHYSCM 379 (600)
Q Consensus 305 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 379 (600)
+..+...|.+.|++++|+..|.+.++.. +.+...+..+..+|.+.|++++|+..++.+++...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3345556666777777777777776642 234566666677777777777777777766532111111 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHc
Q 007530 380 IDILGRAGLIHEAYDLILN 398 (600)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~ 398 (600)
...+...+++++|.+.|++
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4455555555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.29 E-value=0.00015 Score=59.04 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=68.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCCc-cHHHHHHHH
Q 007530 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHI----------GMVEKGKSYFDLMVKQHNVLP-NVFHYSCMI 380 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 380 (600)
|-+.+.+++|+..|+...+.. +.|...+..+..++... +.+++|+..|+.+++. .| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhHH
Confidence 445556777777777776642 22445555555555432 2334455555555422 22 333444444
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 007530 381 DILGRAGLIHEAYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVAR 460 (600)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 460 (600)
.+|...|++. ++... ..++++.|.+.++++++++|++...+..|.... .|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHH
Confidence 4443332110 11000 112468899999999999999887666665543 4555
Q ss_pred HHHHhhhCCC
Q 007530 461 ARKLIRDSEV 470 (600)
Q Consensus 461 ~~~~m~~~~~ 470 (600)
++.+..+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 5555555553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=3.8e-05 Score=77.19 Aligned_cols=115 Identities=12% Similarity=-0.047 Sum_probs=64.9
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHhcCCCcCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 007530 269 SNMFAASSLVDMYAKCGCVVDAYFVFSGIEEKNV-VLWNTMISGFSRHARSVEVMILFEKMQQAGLHPN-EQTYISVLSA 346 (600)
Q Consensus 269 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 346 (600)
++...+..+...+.+.|+.++|...+.....++. .++..+...+...|++++|+..|++..+. .|+ ...|+.+...
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAIL 195 (497)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 3455666777778888888888776665444332 45666777788888888898888888875 444 5788888888
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 007530 347 CSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAG 387 (600)
Q Consensus 347 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 387 (600)
+...|+..+|...|.+.+. --+|-...+..|...|.+..
T Consensus 196 ~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 8888888888888888763 22556677777777776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.00049 Score=56.63 Aligned_cols=62 Identities=13% Similarity=0.003 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhcCCC-------CC----cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 406 SMWGSLLASCRNYRNLELAEIAAKQLFGMEP-------DN----AGNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 406 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
..|+.+..++...|++++|...+++++++.| +. ...+..++.+|...|++++|...|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777765332 21 22567889999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.17 E-value=0.00029 Score=57.24 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-----------hHHHHHHHHHhhhC
Q 007530 419 RNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRR-----------WEEVARARKLIRDS 468 (600)
Q Consensus 419 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~ 468 (600)
+.+++|...++++++++|+++.+|..++.+|...|+ +++|.+.|+...+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 456889999999999999999999999999987764 57777777776653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0008 Score=49.89 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHcC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHH
Q 007530 379 MIDILGRAGLIHEAYDLILNM--------PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSN 447 (600)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 447 (600)
+...+.+.|++++|...|++. ...++ ..++..|..++...|++++|...++++++++|+++.++..+..
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 444445555555555555433 11223 5678889999999999999999999999999999887776644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.95 E-value=0.0029 Score=51.77 Aligned_cols=32 Identities=13% Similarity=-0.127 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC
Q 007530 407 MWGSLLASCRNYRNLELAEIAAKQLFGMEPDN 438 (600)
Q Consensus 407 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 438 (600)
.+..+..++...|++++|...+++++++.|..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 56677888888999999999999988866543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0019 Score=47.74 Aligned_cols=65 Identities=11% Similarity=-0.080 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 007530 405 ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDN-------AGNHLLLSNIYAANRRWEEVARARKLIRDSE 469 (600)
Q Consensus 405 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 469 (600)
...+-.+...+...|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|...+++..+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445578888999999999999999999855433 3468899999999999999999999987653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.0079 Score=50.25 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----hcCCCccHHH
Q 007530 301 NVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK----QHNVLPNVFH 375 (600)
Q Consensus 301 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 375 (600)
....+..+...+...|++++|+..++++.... +-+...|..++.++...|+..+|++.|+.+.+ +.|+.|+..+
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 35567778888888899999999999888852 33677888889999999999999888887633 3588887655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.91 E-value=0.0019 Score=57.95 Aligned_cols=125 Identities=10% Similarity=-0.036 Sum_probs=84.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCHHH
Q 007530 313 SRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPN-VFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 313 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 391 (600)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45788999999999988852 335678888888899999999999999988743 454 3444445555544454444
Q ss_pred HHHHHHcC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 392 AYDLILNM--PFDAT-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 392 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 43332221 12232 2334444556777899999999999999888887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.52 E-value=0.0032 Score=56.50 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=77.8
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
..+.|++++|+..|++.++. -|.|...+..+...++..|++++|.+.++...+..+. +...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence 34678888888888888887 4667788888888888888888888888888887543 34445555555444444444
Q ss_pred HHHHHcc--CC-CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007530 189 ASRVFES--MP-ER-NEVTWSSMVAGFVQNELYEEALILFRRAQVL 230 (600)
Q Consensus 189 A~~~f~~--m~-~~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (600)
+..-... +. .+ +...+......+.+.|+.++|.+++.+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3322211 11 11 2233444456677778888888888877653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.13 E-value=0.17 Score=37.97 Aligned_cols=141 Identities=6% Similarity=-0.088 Sum_probs=102.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 007530 312 FSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVKQHNVLPNVFHYSCMIDILGRAGLIHE 391 (600)
Q Consensus 312 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 391 (600)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34568888888888888764 3566777777766777778888888888865555444 333333
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 007530 392 AYDLILNMPFDATASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGNHLLLSNIYAANRRWEEVARARKLIRDSEVK 471 (600)
Q Consensus 392 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 471 (600)
...-+-.+. .+......-+.....+|+-+.-.+++..+++.+.-+|.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 233444556677788899999999999988876667889999999999999999999999999999874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.8 Score=43.78 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=34.1
Q ss_pred HHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007530 176 LLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLG 231 (600)
Q Consensus 176 li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 231 (600)
.+....+.+++......|..-+ .+...-.....+..+.|+.++|...+...-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3455666777777666554432 244444556666777788777777777665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.38 E-value=0.3 Score=37.71 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=38.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cCCHHHH
Q 007530 114 REQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAK----CGLISDA 189 (600)
Q Consensus 114 ~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 189 (600)
++++|++.|++..+.| +......+. .....+.++|...+....+.| ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g----~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN----EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT----CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC----Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 4667777777777766 222333332 223445666666666666654 34444445555543 2334444
Q ss_pred HHHHccC
Q 007530 190 SRVFESM 196 (600)
Q Consensus 190 ~~~f~~m 196 (600)
.+.|+..
T Consensus 79 ~~~~~~a 85 (133)
T d1klxa_ 79 AQYYSKA 85 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 4444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=2.4 Score=40.20 Aligned_cols=371 Identities=10% Similarity=-0.010 Sum_probs=204.0
Q ss_pred HHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHcCCCC
Q 007530 54 VCHAKIIGMGLNN-DTLTSNILINFYSKCGLISGARKVFDEMPQRCIVSWNTIIGSYTTNGREQEAVALFINMLREGKTP 132 (600)
Q Consensus 54 ~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 132 (600)
++-..+.+..-.| ....-...+..+++.+++......+..-+ .+...--....+....|+.++|...+...-..|...
T Consensus 57 ~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~ 135 (450)
T d1qsaa1 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ 135 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Confidence 4555555432222 12233444667788889888777665432 233333456677778899999998888877766333
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 007530 133 YSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISDASRVFESMPERNEVTWSSMVAGFV 212 (600)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~ 212 (600)
|+. . ..++....+.|.. +...+-.-+......|+...|..+...++..........+....
T Consensus 136 p~~--c----------------~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~ 196 (450)
T d1qsaa1 136 PNA--C----------------DKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN 196 (450)
T ss_dssp CTH--H----------------HHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred chH--H----------------HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh
Confidence 332 2 2334444444332 34444445566677788999999988887655555555555543
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCchHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhhCCH
Q 007530 213 QNELYEEALILFRRAQVLGLEYNQFTISSVICACAG--LAALIQGKQVHAVLCKTGFGSNMFA---ASSLVDMYAKCGCV 287 (600)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~y~~~g~~ 287 (600)
+. ..+...... ..++......+..+..+ ..+.+.+..++.............. ...+...+...+..
T Consensus 197 ~p---~~~~~~~~~-----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 268 (450)
T d1qsaa1 197 NP---NTVLTFART-----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVT 268 (450)
T ss_dssp CG---GGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCC
T ss_pred Ch---HhHHHHHhc-----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCch
Confidence 32 222222111 12333333333333333 2456667777766655432222211 11222222334555
Q ss_pred HHHHHHHhcCCC--cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007530 288 VDAYFVFSGIEE--KNVVLWNTMISGFSRHARSVEVMILFEKMQQAGLHPNEQTYISVLSACSHIGMVEKGKSYFDLMVK 365 (600)
Q Consensus 288 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 365 (600)
+.+...+..... .+.....-.+......+++..+...+..|... ..-...-.--+..+....|+.+.|..+|..+..
T Consensus 269 ~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 269 DEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 666655543321 23332223344455667888888888877432 112234445677888888999999999988852
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHHH-HcCCCCCCH-HH---HHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcc
Q 007530 366 QHNVLPNVFHYSCMIDILGRAGLIHEAYDLI-LNMPFDATA-SM---WGSLLASCRNYRNLELAEIAAKQLFGMEPDNAG 440 (600)
Q Consensus 366 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 440 (600)
.++ .|.-|.. .+.|..- .+- ...+..+.. .. -..-+..+...|....|...+..+.+.. ++.
T Consensus 348 ----~~~--fYG~LAa--~~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~ 414 (450)
T d1qsaa1 348 ----QRG--FYPMVAA--QRIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKT 414 (450)
T ss_dssp ----SCS--HHHHHHH--HHTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHH
T ss_pred ----CCC--hHHHHHH--HHcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHH
Confidence 244 4544432 1222110 000 001111111 11 1123455667899999999998887643 345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 007530 441 NHLLLSNIYAANRRWEEVARARKLIR 466 (600)
Q Consensus 441 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 466 (600)
-...++....+.|.++.|+.......
T Consensus 415 ~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 415 EQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 67788888999999999998876654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.26 Score=37.25 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 007530 421 LELAEIAAKQLFGMEPDNA-GNHLLLSNIYAANRRWEEVARARKLIRD 467 (600)
Q Consensus 421 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 467 (600)
.++|..+++++++.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555444332 2334555555555555555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.50 E-value=1.5 Score=32.71 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=86.5
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHH
Q 007530 109 YTTNGREQEAVALFINMLREGKTPYSEFTVSSVLCACAAKRDVFECKQLHVFALKAAMDRNVFVGTALLDVYAKCGLISD 188 (600)
Q Consensus 109 ~~~~g~~~~A~~~~~~m~~~g~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 188 (600)
+.-.|..++..+++.+..... +..-|+.++.-....-+-+...++++.+-+. + | ..+|+++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHH
Confidence 344566666666666665543 3344444444443333333333333332221 1 1 123455555
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 007530 189 ASRVFESMPERNEVTWSSMVAGFVQNELYEEALILFRRAQVLGLEYNQFTISSVICACAGLAALIQGKQVHAVLCKTGFG 268 (600)
Q Consensus 189 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 268 (600)
....|-.+.. +....+.-+....++|.-++-.++++.+.+. -+|++.....+..||.+.|+..++..++.++.+.|+.
T Consensus 75 vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 5554444432 3344566678888899999988898886664 4778888888999999999999999999998888853
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.59 E-value=1.4 Score=33.62 Aligned_cols=46 Identities=4% Similarity=-0.025 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHH
Q 007530 316 ARSVEVMILFEKMQQAGLHPNEQTYISVLSACSH----IGMVEKGKSYFDLMV 364 (600)
Q Consensus 316 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~ 364 (600)
.+.++|+++|++..+.| +......|...|.+ ..+.++|.++|+...
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 35667777777777665 22333334434433 357777878777764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.42 E-value=1.4 Score=32.96 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=37.3
Q ss_pred HHHHHHHHHcC-CCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHhcCCCCCcch
Q 007530 389 IHEAYDLILNM-PFDA-T-ASMWGSLLASCRNYRNLELAEIAAKQLFGMEPDNAGN 441 (600)
Q Consensus 389 ~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 441 (600)
.+++..++++. ...| + ...|-.|.-+|.+.|+++.|...++++++++|++..+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 34555555544 1123 2 3566778888889999999999999999999998654
|