Citrus Sinensis ID: 007586

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------

MEEDKKVNKMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLLSVQSCT

ccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHcccccEEEEcccccccccccccccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccccccccccccHHHHccccccEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccHHHHHHHHHccccccEEEEcccccccccccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccccccEEcccccccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHcccccEEEEcccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccc

ccccccccccccccccHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHcccHHHccccEEEEcHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHcccccEEEcccccccccccHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccEEccHccccccHHHHHHHHHccccHEEEEHccccHHHHHHHHHHcHHccEEEEcccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHcHHHcEEEEEcccccccHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccEEEEEEcccccccccccccccccccHcEEEEEEEcccccccccccEEEcccccEEEEEccc

meedkkvnkmnsgmpdidTVFECVipyvedpkdrdaISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESlklkgkpraamfnlipedwggyvtPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDkccgfstdgllhVSRSCRQLRTLFLEEssifekdgdWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCrslssvkindcellDLVNFFQIATALEEfcggsfnhppekysavafprSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDhclliqrcpnleiletrnviGDRGLEVLARSCKKLKRLRIergadeqgmedeeglVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEkiadlpldnGVRALLMGCDKLRRFGLYlrqggltdtglgyvgqYSLNVRWMLLGcvgetdegliafsrgcpnlrklemrgcsFSEYALAAAVMQLTSLRYLWVQGyraskdgrdILRMVrpfwnielipprlvsdtdqlgnpiviehpAHILAYYSlagqrtdfpetvrpldtesllsvqsct

meedkkvnkmnsgmpdidTVFECVIPYVedpkdrdaisLVCRRWYeldattrrhitialcytttparlrrRFRNLeslklkgkpraamFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILEtrnvigdrgleVLARSCKKLKrlriergadeqgmedeeglvSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKiadlpldngvRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETvrpldtesllsvqsct

MEEDKKVNKMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFaamlkkldllyallNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLLSVQSCT

****************IDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRI**************LVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDF*******************

****************IDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLLSVQSC*

*********MNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGA**********LVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTE*********

************GMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPR********GNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLLSVQSCT

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		597	2.2.26 [Sep-21-2011]
O04197		592	Coronatine-insensitive pr	yes	no	0.976	0.984	0.706	0.0
Q9ZR12		585	GRR1-like protein 1 OS=Ar	no	no	0.916	0.935	0.333	8e-82
Q570C0		594	Protein TRANSPORT INHIBIT	no	no	0.938	0.942	0.334	1e-80
Q9LPW7		577	Protein AUXIN SIGNALING F	no	no	0.939	0.972	0.336	2e-78
Q8RWQ8		623	F-box protein FBX14 OS=Ar	no	no	0.927	0.889	0.320	2e-73
Q9LW29		575	Protein AUXIN SIGNALING F	no	no	0.931	0.966	0.335	2e-73
Q9LTX2		619	Transport inhibitor respo	no	no	0.921	0.888	0.331	3e-73
Q7XVM8		575	Transport inhibitor respo	no	no	0.932	0.968	0.311	3e-72
Q2R3K5		568	Transport inhibitor respo	no	no	0.919	0.966	0.309	7e-66
Q0DKP3		587	Transport inhibitor respo	no	no	0.926	0.942	0.306	2e-51

>sp\|O04197\|COI1_ARATH Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1	Back alignment and function desciption

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/587 (70%), Positives = 479/587 (81%), Gaps = 4/587 (0%)

Query: 3   EDKKVNKMN-SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCY 61
           ED  + +   S +  +D V E V+ Y+ DPKDRD+ SLVCRRW+++D+ TR H+T+ALCY
Sbjct: 2   EDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY 61

Query: 62  TTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRR 121
           T TP RL RRF NL SLKLKGKPRAAMFNLIPE+WGGYVTPWV EI+ +   LKS+HFRR
Sbjct: 62  TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR 121

Query: 122 MIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDG 181
           MIV D DL+ LAK R  +L  LKLDKC GF+TDGLL +   CR+++TL +EESS  EKDG
Sbjct: 122 MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181

Query: 182 DWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQI 241
            WLHELA +NT LE LNFYMT+  K++ +DLE IARNCRSL SVK+ D E+L+LV FF+ 
Sbjct: 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241

Query: 242 ATALEEFCGGSFNHP---PEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLL 298
           A  LEEFCGGS N     PEKY  + FPR +CRLGLSYM  + M I+FPFAA ++KLDLL
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query: 299 YALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDE 358
           YALL TEDHC LIQ+CPNLE+LETRNVIGDRGLEVLA+ CK+LKRLRIERGADEQGMEDE
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361

Query: 359 EGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIAD 418
           EGLVSQRGLIALAQGC ELEY+A+YVSDITNESLE IG  L+NLCDFRLVLLDREE+I D
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421

Query: 419 LPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLI 478
           LPLDNGVR+LL+GC KLRRF  YLRQGGLTD GL Y+GQYS NVRWMLLG VGE+DEGL+
Sbjct: 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481

Query: 479 AFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWN 538
            FSRGCPNL+KLEMRGC FSE A+AAAV +L SLRYLWVQGYRAS  G+D+++M RP+WN
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541

Query: 539 IELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPL 585
           IELIP R V + +Q G    +EHPAHILAYYSLAGQRTD P TVR L
Sbjct: 542 IELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588

Required for jasmonate-regulated plant fertility and defense processes, and for coronatine and/or other elicitors perceptions/responses. Seems to not be required for meiosis. Required for the regulation of some genes induced by wounding, but not for all. Component of SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including the ribulose bisphosphate carboxylase small chain 1B RBCS-1B and the histone deacetylase HDA6). These SCF complexes play crucial roles in regulating response to jasmonate, and their interactions with the COP9 signalosome (CSN) appear to be important for their activity. Interacts with TIFY10A and inositol pentakisphosphate to form a high-affinity jasmonates coreceptor. Involved in the regulation of plant gene expression during plant-pathogen interactions with Pseudomonas syringae and Alternaria brassicicola.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ZR12\|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1	Back alignment and function description

>sp\|Q570C0\|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2	Back alignment and function description

>sp\|Q9LPW7\|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1	Back alignment and function description

>sp\|Q8RWQ8\|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=2 SV=1	Back alignment and function description

>sp\|Q9LW29\|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1	Back alignment and function description

>sp\|Q9LTX2\|TIR1L_ARATH Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1	Back alignment and function description

>sp\|Q7XVM8\|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1	Back alignment and function description

>sp\|Q2R3K5\|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1	Back alignment and function description

>sp\|Q0DKP3\|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
157782958		597	coronatine-insensitive 1 [Hevea brasilie	0.988	0.988	0.757	0.0
359486723		598	PREDICTED: coronatine-insensitive protei	0.989	0.988	0.747	0.0
381141436		586	coronatine insensitive 1 [Vitis vinifera	0.964	0.982	0.765	0.0
380719869		598	coronatine insensitive 1 [Vitis quinquan	0.989	0.988	0.745	0.0
449506528		593	PREDICTED: LOW QUALITY PROTEIN: coronati	0.983	0.989	0.744	0.0
449465021		596	PREDICTED: LOW QUALITY PROTEIN: coronati	0.983	0.984	0.741	0.0
356568626		590	PREDICTED: coronatine-insensitive protei	0.979	0.991	0.725	0.0
351724347		590	coronatine-insensitive 1 [Glycine max] g	0.979	0.991	0.725	0.0
255579142		602	Coronatine-insensitive protein, putative	0.978	0.970	0.742	0.0
224101095		573	f-box family protein [Populus trichocarp	0.953	0.993	0.750	0.0

>gi\|157782958\|gb\|ABV72393.1\| coronatine-insensitive 1 [Hevea brasiliensis]	Back alignment and taxonomy information

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/602 (75%), Positives = 513/602 (85%), Gaps = 12/602 (1%)

Query: 1   MEEDKKVNKMN-----SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHI 55
           MEE+ + NK +     SGM D+  V  CV+PY+ DP+DRDA+SLVCRRWYELDA TR+HI
Sbjct: 1   MEEENQSNKSSRISCSSGMSDV--VLGCVMPYIHDPRDRDAVSLVCRRWYELDALTRKHI 58

Query: 56  TIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLK 115
           TIA CYTT+P RLRRRF +LESLKLKGKPRAAMFNLIPEDWGG+VTPWV EIA SFN LK
Sbjct: 59  TIAFCYTTSPDRLRRRFMHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIAESFNCLK 118

Query: 116 SIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESS 175
           S+HFRRMIV DSDLEVLAK+RG+ L V KLDKC GFSTDGLLHV R CRQLRTLFLEESS
Sbjct: 119 SLHFRRMIVTDSDLEVLAKSRGRVLQVFKLDKCSGFSTDGLLHVGRLCRQLRTLFLEESS 178

Query: 176 IFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDL 235
           I EKDG WLHELAL NTVLETLN YMTDL KV  EDLELIA+NCR+L SVKI+DCE+LDL
Sbjct: 179 ILEKDGSWLHELALNNTVLETLNLYMTDLNKVRFEDLELIAKNCRNLVSVKISDCEILDL 238

Query: 236 VNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKL 295
           V FF  A ALEEFCGGSFN  P+KYSAV FP+ +CRLGL+YM ++ M I+FPFA++LKKL
Sbjct: 239 VRFFHTAAALEEFCGGSFNDMPDKYSAVTFPQKLCRLGLTYMGKNEMRIVFPFASLLKKL 298

Query: 296 DLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGM 355
           DLLYALL+TEDHCLLIQ+C NLE+LETRNVIGDRGLEVLA SC++LKRLRIE GADEQ M
Sbjct: 299 DLLYALLDTEDHCLLIQKCFNLEVLETRNVIGDRGLEVLASSCRRLKRLRIELGADEQEM 358

Query: 356 EDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEK 415
           EDEEG+VSQRGLIALAQGCLELEY+A+YVSDITN +LE IG +LR L DFRLVLLDREE+
Sbjct: 359 EDEEGVVSQRGLIALAQGCLELEYMAVYVSDITNAALEHIGTHLRKLNDFRLVLLDREER 418

Query: 416 IADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDE 475
           I DLPLD GV++LLM   KLRRF LYLR GGLTD GLGY+GQ+S NVRWMLLG VGE+DE
Sbjct: 419 ITDLPLDRGVQSLLMQ-RKLRRFALYLRPGGLTDEGLGYIGQHSKNVRWMLLGYVGESDE 477

Query: 476 GLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKD-GRDILRMVR 534
           GL+AFS+GCP+L+KLEMRGC F+E ALA AVMQLTSLRYLWVQGYRAS   GRD+L M R
Sbjct: 478 GLLAFSKGCPSLQKLEMRGCCFTEGALAKAVMQLTSLRYLWVQGYRASSTRGRDLLAMAR 537

Query: 535 PFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLLSVQ 594
           PFWNIELIPPR V   +Q+G  +V+EHPA ILAYYSLAG RTDFP TV PLD+     ++
Sbjct: 538 PFWNIELIPPRKVVMVNQVGEDVVVEHPAQILAYYSLAGPRTDFPNTVVPLDS---CRIE 594

Query: 595 SC 596
           SC
Sbjct: 595 SC 596

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486723\|ref\|XP_002276145.2\| PREDICTED: coronatine-insensitive protein 1-like [Vitis vinifera] gi\|296086095\|emb\|CBI31536.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|381141436\|gb\|AFF57759.1\| coronatine insensitive 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|380719869\|gb\|AFD63135.1\| coronatine insensitive 1 [Vitis quinquangularis]	Back alignment and taxonomy information

>gi\|449506528\|ref\|XP_004162774.1\| PREDICTED: LOW QUALITY PROTEIN: coronatine-insensitive protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449465021\|ref\|XP_004150227.1\| PREDICTED: LOW QUALITY PROTEIN: coronatine-insensitive protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356568626\|ref\|XP_003552511.1\| PREDICTED: coronatine-insensitive protein 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|351724347\|ref\|NP_001238590.1\| coronatine-insensitive 1 [Glycine max] gi\|72154229\|gb\|AAZ66745.1\| coronatine-insensitive 1 [Glycine max]	Back alignment and taxonomy information

>gi\|255579142\|ref\|XP_002530419.1\| Coronatine-insensitive protein, putative [Ricinus communis] gi\|223530068\|gb\|EEF31989.1\| Coronatine-insensitive protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224101095\|ref\|XP_002312140.1\| f-box family protein [Populus trichocarpa] gi\|222851960\|gb\|EEE89507.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
TAIR\|locus:2061136		592	COI1 "CORONATINE INSENSITIVE 1	0.976	0.984	0.688	1.9e-218
UNIPROTKB\|A4KA30		586	TIR1 "Transport inhibitor resp	0.948	0.965	0.342	2.5e-81
UNIPROTKB\|B9S3W2		585	RCOM_0556140 "TRANSPORT INHIBI	0.951	0.970	0.329	1.8e-78
TAIR\|locus:2099237		594	TIR1 "AT3G62980" [Arabidopsis	0.938	0.942	0.337	3e-78
UNIPROTKB\|A5ARV5		581	VITISV_038840 "Putative unchar	0.938	0.963	0.334	7.1e-77
TAIR\|locus:2125527		585	GRH1 "AT4G03190" [Arabidopsis	0.921	0.940	0.322	1.7e-75
UNIPROTKB\|A5AZ08		601	VITISV_002642 "Putative unchar	0.926	0.920	0.337	2.1e-75
TAIR\|locus:2010366		577	AFB3 "AT1G12820" [Arabidopsis	0.938	0.970	0.339	4.5e-75
TAIR\|locus:2088464		575	AFB2 "AT3G26810" [Arabidopsis	0.929	0.965	0.341	9.3e-75
UNIPROTKB\|B9IBT6		584	FBL2 "F-box family protein" [P	0.939	0.960	0.319	4e-74

TAIR\|locus:2061136 COI1 "CORONATINE INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2110 (747.8 bits), Expect = 1.9e-218, P = 1.9e-218
 Identities = 404/587 (68%), Positives = 466/587 (79%)

Query:     3 EDKKVNKMN-SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCY 61
             ED  + +   S +  +D V E V+ Y+ DPKDRD+ SLVCRRW+++D+ TR H+T+ALCY
Sbjct:     2 EDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY 61

Query:    62 TTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRR 121
             T TP RL RRF NL SLKLKGKPRAAMFNLIPE+WGGYVTPWV EI+ +   LKS+HFRR
Sbjct:    62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR 121

Query:   122 MIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDG 181
             MIV D DL+ LAK R  +L  LKLDKC GF+TDGLL +   CR+++TL +EESS  EKDG
Sbjct:   122 MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181

Query:   182 DWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQI 241
              WLHELA +NT LE LNFYMT+  K++ +DLE IARNCRSL SVK+ D E+L+LV FF+ 
Sbjct:   182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241

Query:   242 ATALEEFCGGSFNHP---PEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFXXXXXXXXXX 298
             A  LEEFCGGS N     PEKY  + FPR +CRLGLSYM  + M I+FPF          
Sbjct:   242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query:   299 XXXXNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDE 358
                  TEDHC LIQ+CPNLE+LETRNVIGDRGLEVLA+ CK+LKRLRIERGADEQGMEDE
Sbjct:   302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361

Query:   359 EGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIAD 418
             EGLVSQRGLIALAQGC ELEY+A+YVSDITNESLE IG  L+NLCDFRLVLLDREE+I D
Sbjct:   362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421

Query:   419 LPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLI 478
             LPLDNGVR+LL+GC KLRRF  YLRQGGLTD GL Y+GQYS NVRWMLLG VGE+DEGL+
Sbjct:   422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481

Query:   479 AFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWN 538
              FSRGCPNL+KLEMRGC FSE A+AAAV +L SLRYLWVQGYRAS  G+D+++M RP+WN
Sbjct:   482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541

Query:   539 IELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPL 585
             IELIP R V + +Q G    +EHPAHILAYYSLAGQRTD P TVR L
Sbjct:   542 IELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;TAS

GO:0009625 "response to insect" evidence=IMP

GO:0009611 "response to wounding" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0009641 "shade avoidance" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006952 "defense response" evidence=TAS

UNIPROTKB\|A4KA30 TIR1 "Transport inhibitor response 1" [Gossypium hirsutum (taxid:3635)]	Back alignment and assigned GO terms

UNIPROTKB\|B9S3W2 RCOM_0556140 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

TAIR\|locus:2099237 TIR1 "AT3G62980" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A5ARV5 VITISV_038840 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)]	Back alignment and assigned GO terms

TAIR\|locus:2125527 GRH1 "AT4G03190" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A5AZ08 VITISV_002642 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)]	Back alignment and assigned GO terms

TAIR\|locus:2010366 AFB3 "AT1G12820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088464 AFB2 "AT3G26810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B9IBT6 FBL2 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04197	COI1_ARATH	No assigned EC number	0.7069	0.9765	0.9847	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		597
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-05
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	7e-04

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 56/210 (26%), Positives = 74/210 (35%), Gaps = 72/210 (34%)

Query: 292 LKKLDLL-YALLNTEDHCLLIQRCPNLEILETR--NVIGDRGLEVLARSCKKLKRLRIER 348
           LKKL L    L++ E    L Q CPNL++L+ R    I D G+  LA +C KL+ + +  
Sbjct: 54  LKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINL-- 111

Query: 349 GADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLV 408
                G      L++   L AL + C  L+ +     D+T                    
Sbjct: 112 -----GRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVT-------------------- 146

Query: 409 LLDREEKIADLPLDNGVRALLMGC-DKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLL 467
                        D GV  L  GC   L R                     SLN      
Sbjct: 147 -------------DKGVWELASGCSKSLERL--------------------SLN------ 167

Query: 468 GCVGETDEGL--IAFSRGCPNLRKLEMRGC 495
            C   TD+ +  I  S   PNL  LE RGC
Sbjct: 168 NCRNLTDQSIPAILASNYFPNLSVLEFRGC 197

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		597
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG4341		483	consensus F-box protein containing LRR [General fu	99.91
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.9
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.76
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.63
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.59
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.55
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.54
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.49
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.47
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.36
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.32
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.29
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.21
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.19
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.01
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.9
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.77
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.72
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.7
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.64
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.56
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.51
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.49
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.48
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.47
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.37
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.28
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.26
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.2
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.2
KOG4308		478	consensus LRR-containing protein [Function unknown	98.2
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.19
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.12
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.06
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.95
KOG4308		478	consensus LRR-containing protein [Function unknown	97.74
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.73
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.59
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.58
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.48
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.43
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.41
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.21
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.16
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.05
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	96.93
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	96.79
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.61
PLN03150		623	hypothetical protein; Provisional	96.55
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.52
PLN03150		623	hypothetical protein; Provisional	96.34
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.14
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.12
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.8
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.59
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.57
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.53
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.53
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.35
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.22
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.77
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.31
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	94.15
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.69
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.4
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	93.1
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	92.95
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	92.7
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	92.6
PRK15386		426	type III secretion protein GogB; Provisional	92.43
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	91.1
KOG2997		366	consensus F-box protein FBX9 [General function pre	89.96
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.56
PRK15386		426	type III secretion protein GogB; Provisional	85.58
PF13013		109	F-box-like_2: F-box-like domain	84.64
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	84.57
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	82.5
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	80.24

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=6.7e-33  Score=259.66  Aligned_cols=372  Identities=23%  Similarity=0.323  Sum_probs=254.6

Q ss_pred             CCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhh----cccccEEEEccccccChhhHHHhcCCceEEEeeCCCccc
Q 007586           12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELD----ATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAA   87 (597)
Q Consensus        12 ~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   87 (597)
                      -.||.  |++.+||+|| +.+.+.+++++|+.|+..+    .|++.+++-...+ +                        
T Consensus        73 ~~LPp--El~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-v------------------------  124 (483)
T KOG4341|consen   73 RSLPP--ELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD-V------------------------  124 (483)
T ss_pred             ccCCH--HHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc-C------------------------
Confidence            34999  9999999999 9999999999999999886    2333332210000 0                        


Q ss_pred             ccCCCCCCCCCCccHHHHHHHHhC-CCCcEEEecCC-ccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCC
Q 007586           88 MFNLIPEDWGGYVTPWVEEIAASF-NSLKSIHFRRM-IVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQ  165 (597)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~  165 (597)
                                  ..+.+..+.++| .-|++|.++++ .+.+..+..+...+|+ +++|.+.+|..+++..+..+++.|++
T Consensus       125 ------------~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~Cpn-IehL~l~gc~~iTd~s~~sla~~C~~  191 (483)
T KOG4341|consen  125 ------------DGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPN-IEHLALYGCKKITDSSLLSLARYCRK  191 (483)
T ss_pred             ------------CCcceehHhhhhccccccccccccccCCcchhhHHhhhCCc-hhhhhhhcceeccHHHHHHHHHhcch
Confidence                        012233333333 34566666666 5556666666666666 66666666666666555566666666


Q ss_pred             CCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccc
Q 007586          166 LRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATAL  245 (597)
Q Consensus       166 L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L  245 (597)
                      |++|+|..|..                              +++..+..+...|++|++|+++.|+.             
T Consensus       192 l~~l~L~~c~~------------------------------iT~~~Lk~la~gC~kL~~lNlSwc~q-------------  228 (483)
T KOG4341|consen  192 LRHLNLHSCSS------------------------------ITDVSLKYLAEGCRKLKYLNLSWCPQ-------------  228 (483)
T ss_pred             hhhhhhcccch------------------------------hHHHHHHHHHHhhhhHHHhhhccCch-------------
Confidence            66665555420                              22222223333333333333333320             


Q ss_pred             hhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC
Q 007586          246 EEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV  325 (597)
Q Consensus       246 ~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~  325 (597)
                                                                              +.+.++..+.+++.+++.+...||
T Consensus       229 --------------------------------------------------------i~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  229 --------------------------------------------------------ISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             --------------------------------------------------------hhcCcchHHhccchhhhhhhhccc
Confidence                                                                    111122222222222222222221


Q ss_pred             --cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeec-ccccCCHHHHHHHHHhccCc
Q 007586          326 --IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAI-YVSDITNESLECIGANLRNL  402 (597)
Q Consensus       326 --~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L  402 (597)
                        ..++.+......++.+.++++..          |..+++.++..+...|..|+.|+. +++++++..+.++++++++|
T Consensus       253 ~e~~le~l~~~~~~~~~i~~lnl~~----------c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L  322 (483)
T KOG4341|consen  253 LELELEALLKAAAYCLEILKLNLQH----------CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL  322 (483)
T ss_pred             ccccHHHHHHHhccChHhhccchhh----------hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence              22344455555667777888888          889999999988888999999998 77889999999999999999


Q ss_pred             ccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEcccc-CCCHHHHHHHH
Q 007586          403 CDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCV-GETDEGLIAFS  481 (597)
Q Consensus       403 ~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~  481 (597)
                      +.|.+..   |..++    |.|+..+..+|+.|+.+++.. .+.++|..+..++.+|+.|+.|.++.+ .++|+++..+.
T Consensus       323 ~~l~l~~---c~~fs----d~~ft~l~rn~~~Le~l~~e~-~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  323 QVLELSG---CQQFS----DRGFTMLGRNCPHLERLDLEE-CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             EEEeccc---cchhh----hhhhhhhhcCChhhhhhcccc-cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            9999988   55677    899999999999999999966 367888889999999999999999655 47999877666


Q ss_pred             h---CCCCCCEEEeecCC-CcHHHHHHHHHccccccEEEeeccc-cCHHHHHHHHhhCCCcEEEEc
Q 007586          482 R---GCPNLRKLEMRGCS-FSEYALAAAVMQLTSLRYLWVQGYR-ASKDGRDILRMVRPFWNIELI  542 (597)
Q Consensus       482 ~---~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~~l~~~  542 (597)
                      .   +...|+.+.+++|+ +++..+..+. .|++|+++++.+|+ ++.++++.++..+|..++.-+
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            3   34789999999999 6777666665 59999999999999 999999999999998655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		597
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		0.0
2p1m_B		594	Tir1-ask1 Complex Structure Length = 594		6e-78

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Iteration: 1

Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/577 (69%), Positives = 462/577 (80%), Gaps = 3/577 (0%) Query: 12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRR 71 S + +D V E V+ Y+ DPKDRD+ SLVCRRW+++D+ TR H+T+ALCYT TP RL RR Sbjct: 12 SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRR 71 Query: 72 FRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEV 131 F NL SLKLKGKPRAAMFNLIPE+WGGYVTPWV EI+ + LKS+HFRRMIV D DL+ Sbjct: 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131 Query: 132 LAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191 LAK R +L LKLDKC GF+TDGLL + CR+++TL +EESS EKDG WLHELA +N Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 Query: 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGG 251 T LE LNFYMT+ K++ +DLE IARNCRSL SVK+ D E+L+LV FF+ A LEEFCGG Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 Query: 252 SFNHP---PEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFXXXXXXXXXXXXXXNTEDHC 308 S N PEKY + FPR +CRLGLSYM + M I+FPF TEDHC Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311 Query: 309 LLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368 LIQ+CPNLE+LETRNVIGDRGLEVLA+ CK+LKRLRIERGADEQGMEDEEGLVSQRGLI Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 Query: 369 ALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRAL 428 ALAQGC ELEY+A+YVSDITNESLE IG L+NLCDFRLVLLDREE+I DLPLDNGVR+L Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 Query: 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLR 488 L+GC KLRRF YLRQGGLTD GL Y+GQYS NVRWMLLG VGE+DEGL+ FSRGCPNL+ Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 Query: 489 KLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVS 548 KLEMRGC FSE A+AAAV +L SLRYLWVQGYRAS G+D+++M RP+WNIELIP R V Sbjct: 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551 Query: 549 DTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPL 585 + +Q G +EHPAHILAYYSLAGQRTD P TVR L Sbjct: 552 EVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588

PyMOL of 3ogk

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		597
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-180
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-143
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-18
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-14
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-13
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score =  520 bits (1341), Expect = e-180
 Identities = 415/590 (70%), Positives = 478/590 (81%), Gaps = 3/590 (0%)

Query: 1   MEEDKKVNKMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALC 60
           ME+        S +  +D V E V+ Y+ DPKDRD+ SLVCRRW+++D+ TR H+T+ALC
Sbjct: 1   MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC 60

Query: 61  YTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFR 120
           YT TP RL RRF NL SLKLKGKPRAAMFNLIPE+WGGYVTPWV EI+ +   LKS+HFR
Sbjct: 61  YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFR 120

Query: 121 RMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKD 180
           RMIV D DL+ LAK R  +L  LKLDKC GF+TDGLL +   CR+++TL +EESS  EKD
Sbjct: 121 RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 181 GDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQ 240
           G WLHELA +NT LE LNFYMT+  K++ +DLE IARNCRSL SVK+ D E+L+LV FF+
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 241 IATALEEFCGGSFNH---PPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDL 297
            A  LEEFCGGS N     PEKY  + FPR +CRLGLSYM  + M I+FPFAA ++KLDL
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 298 LYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMED 357
           LYALL TEDHC LIQ+CPNLE+LETRNVIGDRGLEVLA+ CK+LKRLRIERGADEQGMED
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360

Query: 358 EEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIA 417
           EEGLVSQRGLIALAQGC ELEY+A+YVSDITNESLE IG  L+NLCDFRLVLLDREE+I 
Sbjct: 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420

Query: 418 DLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGL 477
           DLPLDNGVR+LL+GC KLRRF  YLRQGGLTD GL Y+GQYS NVRWMLLG VGE+DEGL
Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480

Query: 478 IAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFW 537
           + FSRGCPNL+KLEMRGC FSE A+AAAV +L SLRYLWVQGYRAS  G+D+++M RP+W
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540

Query: 538 NIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDT 587
           NIELIP R V + +Q G    +EHPAHILAYYSLAGQRTD P TVR L  
Sbjct: 541 NIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVLKE 590

PyMOL of 3ogk

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		597
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.98
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.98
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.94
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.88
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.86
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.85
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.84
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.81
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.8
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.8
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.78
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.75
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.75
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.74
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.74
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.74
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.7
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.64
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.57
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.53
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.52
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.51
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.5
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.48
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.43
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.43
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.42
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.4
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.39
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.39
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.39
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.38
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.38
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.34
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.32
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.32
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.31
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.29
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.28
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.27
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.26
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.24
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.22
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.2
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.13
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.13
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.13
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.1
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.09
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.03
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.01
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.97
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.96
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.96
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.96
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.95
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.92
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.88
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.85
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.83
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.81
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.8
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.73
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.72
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.7
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.68
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.67
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.64
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.63
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.6
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.57
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.57
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.55
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.53
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.53
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.4
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.38
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.38
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.38
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.37
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.36
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.34
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.34
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.33
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.33
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.32
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.3
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.3
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.28
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	98.06
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.02
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.97
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	97.93
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.84
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.83
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.8
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.79
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.78
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.75
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.52
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.47
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.46
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.45
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.43
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.31
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.26
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.06
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.95
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	96.92
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.91
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.87
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	96.76
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	96.67
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.57
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.23
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.82
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	95.52
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	95.41

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

Probab=100.00  E-value=2.5e-63  Score=537.27  Aligned_cols=585  Identities=71%  Similarity=1.181  Sum_probs=503.4

Q ss_pred             Cccchhhc--ccCCCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccccEEEEccccccChhhHHHhcCCceEE
Q 007586            1 MEEDKKVN--KMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESL   78 (597)
Q Consensus         1 ~~~~~~~~--~~~~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L   78 (597)
                      |++++..+  .+..+||+  |+|.+||+||++.+|+.++++|||+|+.+..+.+..+.+.+++...+..+..+++++++|
T Consensus         1 m~~~~~~r~~~~~~~LPd--eil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L   78 (592)
T 3ogk_B            1 MEDPDIKRCKLSCVATVD--DVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSL   78 (592)
T ss_dssp             -----------CCCCCGG--GTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEE
T ss_pred             CCChhhhhHhhccCCCCH--HHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEE
Confidence            66544433  24467999  999999999977999999999999999999888899999988888899999999999999


Q ss_pred             EeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHH
Q 007586           79 KLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLH  158 (597)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~  158 (597)
                      ++++++.+.+++++|..|+++..+|+..+...+++|++|+|+++.+++..+..++..+|.+|++|++++|.++++.++..
T Consensus        79 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~  158 (592)
T 3ogk_B           79 KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS  158 (592)
T ss_dssp             EEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred             EecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888665459999999998788888888


Q ss_pred             HHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHH
Q 007586          159 VSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNF  238 (597)
Q Consensus       159 l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  238 (597)
                      +..+|++|++|+|++|.+++.+..|+..++..+++|++|+++++....++...+..+..+|++|++|++++|....++..
T Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~  238 (592)
T 3ogk_B          159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF  238 (592)
T ss_dssp             HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred             HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence            88899999999999999999999999999999999999999998876677889999999999999999999998889999


Q ss_pred             HhhcccchhccCCCCCCCc---chhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCC
Q 007586          239 FQIATALEEFCGGSFNHPP---EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCP  315 (597)
Q Consensus       239 ~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~  315 (597)
                      +...++|++|.++.+....   ..+..+..+..+...+++......++.+...+++|++|+|++|.+++.++..+...++
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            9999999999997654331   2233333344444445555666778888889999999999999999998888888999


Q ss_pred             CCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHH
Q 007586          316 NLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECI  395 (597)
Q Consensus       316 ~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l  395 (597)
                      +|++|++.+++.+.++..+...|++|++|++++++.++...+.|+.+++.++..+...|++|++|+++++.+++.++..+
T Consensus       319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            99999999888899999999999999999999423333333446789999999888899999999999999999999999


Q ss_pred             HHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHH
Q 007586          396 GANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDE  475 (597)
Q Consensus       396 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~  475 (597)
                      +..+++|++|++.+++.++.+++.+.+.|+..++.+|++|++|+++.|.+.+++.++..++..+++|+.|++++|.+++.
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  478 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE  478 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence            99999999999998776788888888889999999999999999987655799999999998899999999999999999


Q ss_pred             HHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCC
Q 007586          476 GLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGN  555 (597)
Q Consensus       476 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~  555 (597)
                      ++..+..+|++|+.|++++|.+++.++..++..+++|++|++++|++++.|++.+++.+|.++++.++.+...+.++.+.
T Consensus       479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~  558 (592)
T 3ogk_B          479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGE  558 (592)
T ss_dssp             HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC----------
T ss_pred             HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccC
Confidence            99999989999999999999999999999998899999999999999999999999999999999998665444445556


Q ss_pred             cccccccceeEEEeeccCCCCCCCCcccccCC
Q 007586          556 PIVIEHPAHILAYYSLAGQRTDFPETVRPLDT  587 (597)
Q Consensus       556 ~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  587 (597)
                      ..+....+++|.|++++|||.++|++|++++.
T Consensus       559 ~~~~~~~~~~~~~~~~~g~~~~~p~~~~~l~~  590 (592)
T 3ogk_B          559 IREMEHPAHILAYYSLAGQRTDCPTTVRVLKE  590 (592)
T ss_dssp             -----CCCEEEEEECTTCSCSCCCTTCEECCS
T ss_pred             CcCCcchhheEeeeecCCCccCCCCCeEecCC
Confidence            66777789999999999999999999999864

PyMOL of 3ogk

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		597
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 16/213 (7%)

Query: 139 NLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLN 198
            +  + L          L  +   C +L+ L LE   +       ++ LA  N+ L  LN
Sbjct: 47  RVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRL---SDPIVNTLA-KNSNLVRLN 101

Query: 199 FYMTDLIKVNVEDLELIARNCRSLSSVKIN---------DCELLDLVNFFQIATALEEFC 249
                    +   L+ +  +C  L  + ++             +  V+       L  + 
Sbjct: 102 LSGCSGF--SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159

Query: 250 GGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCL 309
                                 L  S M ++  +  F     L+ L L        +  L
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219

Query: 310 LIQRCPNLEILETRNVIGDRGLEVLARSCKKLK 342
            +   P L+ L+   ++ D  L++L  +   L+
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		597
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.74
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.04
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.98
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.79
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.78
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.76
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.74
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.73
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.72
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.71
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.7
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.69
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.68
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.64
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.64
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.61
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.59
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.56
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.54
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.5
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.39
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.35
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.34
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.25
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.22
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.17
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.95
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.85
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.82
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.74
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.54
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.47
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.95
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.74
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.47

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-21  Score=199.14  Aligned_cols=393  Identities=14%  Similarity=0.142  Sum_probs=232.8

Q ss_pred             cHHHHHHHHhCCCCcEEEecCCccChHHHHHHH---HhcccCccEEEecCCCCCChHHHHHHHHcC----CCCCeEecCC
Q 007586          101 TPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLA---KNRGKNLLVLKLDKCCGFSTDGLLHVSRSC----RQLRTLFLEE  173 (597)
Q Consensus       101 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~----~~L~~L~L~~  173 (597)
                      +..+..++..+++++.|+|++|.+++..+..++   ..+++ |++|+|+++ .+++.++..+...+    .+|++|+|++
T Consensus        16 ~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~-L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~   93 (460)
T d1z7xw1          16 DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA-LAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN   93 (460)
T ss_dssp             HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTT-CCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred             hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCC-CCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCC
Confidence            334455555566666666666666666555544   23455 666666655 45555555554432    3466666666


Q ss_pred             CcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC----CCCcEEEecCCCc--ccH---HHHHhhccc
Q 007586          174 SSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC----RSLSSVKINDCEL--LDL---VNFFQIATA  244 (597)
Q Consensus       174 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~----~~L~~L~L~~~~~--~~~---~~~~~~~~~  244 (597)
                      |.+++.+...+......+++|++|+++++.   +++.++..+....    .............  ...   .......+.
T Consensus        94 n~it~~~~~~l~~~l~~~~~L~~L~L~~N~---i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  170 (460)
T d1z7xw1          94 CCLTGAGCGVLSSTLRTLPTLQELHLSDNL---LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD  170 (460)
T ss_dssp             SCCBGGGHHHHHHHTTSCTTCCEEECCSSB---CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTT
T ss_pred             CCccccccccccchhhcccccccccccccc---chhhhhhhhhhcccccccccccccccccccchhhhcccccccccccc
Confidence            666655544444444455666666666554   3333333332211    1122333322211  111   111122223


Q ss_pred             chhccCCCCCCCcchhccccChhhhhhcCCcccchhhHH----HhhhcCCCCCEEEecCCcCChHH---HHHHHhcCCCC
Q 007586          245 LEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMW----IIFPFAAMLKKLDLLYALLNTED---HCLLIQRCPNL  317 (597)
Q Consensus       245 L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~----~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~~~~L  317 (597)
                      ++.+.+...                      ......+.    .+.........+++..+.+...+   ........+.+
T Consensus       171 ~~~~~ls~~----------------------~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~  228 (460)
T d1z7xw1         171 FKELTVSNN----------------------DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL  228 (460)
T ss_dssp             CCEEECCSS----------------------BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred             ccccccccc----------------------ccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            333322211                      11111111    12233445778888888755443   33344578889


Q ss_pred             CEEEcCCCc-ChHH----HHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHH---HHHHcCcccceeecccccCCH
Q 007586          318 EILETRNVI-GDRG----LEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI---ALAQGCLELEYIAIYVSDITN  389 (597)
Q Consensus       318 ~~L~l~~~~-~~~~----~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~l~~  389 (597)
                      +.+.+.++. .+..    ..........++.+++++           +.+......   ......+.++.++++.+.+++
T Consensus       229 ~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         229 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-----------CGITAKGCGDLCRVLRAKESLKELSLAGNELGD  297 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-----------SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             cccchhhccccccccchhhccccccccccccccccc-----------ccccccccccccccccccccccccccccccccc
Confidence            999998753 2322    233333456799999987           345544332   223457889999999999999


Q ss_pred             HHHHHHHHhc----cCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHh----cCCC
Q 007586          390 ESLECIGANL----RNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQ----YSLN  461 (597)
Q Consensus       390 ~~~~~l~~~~----~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~----~~~~  461 (597)
                      .++..++..+    +.|+.+.+.++    .++. .....+..+...+++|++|+|++  +.+++.++..++.    ..+.
T Consensus       298 ~~~~~l~~~l~~~~~~L~~l~l~~~----~l~~-~~~~~l~~~~~~~~~L~~L~Ls~--N~i~~~g~~~l~~~l~~~~~~  370 (460)
T d1z7xw1         298 EGARLLCETLLEPGCQLESLWVKSC----SFTA-ACCSHFSSVLAQNRFLLELQISN--NRLEDAGVRELCQGLGQPGSV  370 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTS----CCBG-GGHHHHHHHHHHCSSCCEEECCS--SBCHHHHHHHHHHHHTSTTCC
T ss_pred             cccchhhcccccccccccccccccc----chhh-hhhhhcccccccccchhhhheee--ecccCcccchhhhhhhcccCC
Confidence            8888876543    56888887763    2321 11223444556778899999942  3788888777754    3567


Q ss_pred             CCEEEccccCCCHHHHHHHH---hCCCCCCEEEeecCCCcHHHHHHHHHcc----ccccEEEeeccccCHHHHHHH---H
Q 007586          462 VRWMLLGCVGETDEGLIAFS---RGCPNLRKLEMRGCSFSEYALAAAVMQL----TSLRYLWVQGYRASKDGRDIL---R  531 (597)
Q Consensus       462 L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~~~~l---~  531 (597)
                      |++|+|++|.+++.++.+++   ..+++|++|++++|.|++.++..+++.+    .+|+.|++.++.+++++.+.+   .
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~  450 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE  450 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999998876654   3579999999999999999988887544    479999999999887665444   5


Q ss_pred             hhCCCcE
Q 007586          532 MVRPFWN  538 (597)
Q Consensus       532 ~~~~~~~  538 (597)
                      +..|.++
T Consensus       451 ~~~~~l~  457 (460)
T d1z7xw1         451 KDKPSLR  457 (460)
T ss_dssp             HHCTTSE
T ss_pred             HhCCCCE
Confidence            5566644

PyMOL of d1z7xw1

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure