Citrus Sinensis ID: 007592


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
MGESAVLLRSFSHPSDASREVREGDPIRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVERFSKPGTVAEKKAYFEAHYKKKAAMKAAAAVEEANAAANEIPGLKTTTEILDNSPTDTDSAKENRHMAIKEQKEQRFSHTCADSHMDTVTADEISHVVADDFLKSESPNAEVAPTEANVCYSINTEYDLGDADLKKGEAVIEYAVNVENPTQDDNLKQLQNPDCHYKIEASSLERMPNKEVADEENSASSSKKKLASCSSKLPSESGLSRFVSYKTNHASSLPAARNVNNITASNEEAVGDSNGKKRVVPKSLQKSFIFSPRTTETSKASLKKPKDSSTPIRTPTRASVNGISMHLSKLFQSEDKRSKIAIGSSVSGGITEAGRLQSPSPDLKSSTSNGSKRRSPCITSPFSFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKLGGKPRPTPTVVLDSSSRPPRKPSVNTESSKTCSVTSLPKLGRRPTSNTVQDAHARPLWRSLMKHYR
cccccEEEEccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccc
ccccEEEEEEccccccccccccccccHHHcccEEEcccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccccEccccccccccccccccccccccEEEcccccccccccccccccEEEccEEcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MGESAVLLrsfshpsdasrevregdpiraltesisfgrfmseslawekwstFSHNRYLEEVerfskpgtvaEKKAYFEAHYKKKAAMKAAAAVEEANAAaneipglkttteildnsptdtdsaKENRHMAIKEQkeqrfshtcadshmdtvtadEISHvvaddflksespnaevapteanvCYSInteydlgdadlkkGEAVIEYAVNvenptqddnlkqlqnpdchykieasslermpnkevadeensassskkklascssklpsesglsRFVSYKtnhasslpaarnvnnitasneeavgdsngkkrvvpkslqksfifsprttetskaslkkpkdsstpirtptrasvNGISMHLSKLfqsedkrskiaigssvsggiteagrlqspspdlksstsngskrrspcitspfsfrsEERVAKRKEFFQKLEEKNKAKEAEKgqlerrskdkaqcdikkvqqstsfeakqnkdlccgshlpnahmkkEQAEHDIKKLRqstgfksissancplttkqikkrplcqpcspklggkprptptvvldsssrpprkpsvntessktcsvtslpklgrrptsntvqdahARPLWRSLMKHYR
mgesavllrsfshpsdasrevregdpirALTESISFGRFMSESLAWEKWSTFSHNRYLEEverfskpgtvAEKKAYFEAHYKKKAAMKAAAAVEEANAAaneipglkttteildnsptdtdsaKENRHMAIKeqkeqrfshTCADSHMDTVTADEISHVVADDFLKsespnaevapteanVCYSINTEYDLGDADLKKGEAVIEYAVNvenptqddnlkqlqnpDCHYKIEasslermpnKEVAdeensassskkklascssklpsesgLSRFVSYKTNhasslpaarnvnnitasneeavgdsngkkrvvpkslqksfifsprttetskaslkkpkdsstpirtptrasvngisMHLSKLFQSEDKRSKIAIGSsvsggiteagrlqspspdlksstsngskrrspcitspfsfrseervAKRKEFFQkleeknkakeaekgqlerrskdkaqcdikkvqqstsfeakqnkdLCCGSHLPNAHMKKEQAEHDIKKLRqstgfksissancplttkqikkrplcqpcspklggkprptptvvldsssrpprkpsvntessktcsvtslpklgrrptsntvqdaharplwrslmkhyr
MGESAVLLRSFSHPSDASREVREGDPIRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVERFSKPGTVAEKKAYFeahykkkaamkaaaaveeanaaaneIPGLKTTTEILDNSPTDTDSAKENRHMAIKEQKEQRFSHTCADSHMDTVTADEISHVVADDFLKSESPNAEVAPTEANVCYSINTEYDLGDADLKKGEAVIEYAVNVENPTQDDNLKQLQNPDCHYKIEASSLERMPNKEVADEENsassskkklascssklpsESGLSRFVSYKTNHASSLPAARNVNNITASNEEAVGDSNGKKRVVPKSLQKSFIFSPRTTETSKASLKKPKDSSTPIRTPTRASVNGISMHLSKLFQSEDKRSKIAIGSSVSGGITEAGRLQSPSPDLKSSTSNGSKRRSPCITSPFSFRSEERVAKRKEFFQKLeeknkakeaekGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKLGGKPRPTPTVVLDSSSRPPRKPSVNTESSKTCSVTSLPKLGRRPTSNTVQDAHARPLWRSLMKHYR
*****************************LTESISFGRFMSESLAWEKWSTFSHNRYLEEVERF******************************************************************************************EISHVVADDF************TEANVCYSINTEYDLGDADLKKGEAVIEYAVNV****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***SAVL*******************************FMS**LAWEKW********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MGESAVLLRSFS**********EGDPIRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVERFSKPGTVAEKKAYFEAHYKK*************NAAANEIPGLKTTTEILDNSP*********RHMAIKEQKEQRFSHTCADSHMDTVTADEISHVVADDFLKSESPNAEVAPTEANVCYSINTEYDLGDADLKKGEAVIEYAVNVENPTQDDNLKQLQNPDCHYKIEASSLERM******************************GLSRFVSYKTNHASSLPAARNVNNITASNEEAVGDSNGKKRVVPKSLQKSFIFSP********************RTPTRASVNGISMHLSKLFQSEDKRSKIAIGSSVSGGITEA***********************CITSPFSFRSEERVAKRKEFFQKLEEK******************************SFEAKQNKDLCCGSHLPNAHM********IKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKLGGKPR******************************SLPKL***********AHARPLWRSLMKHYR
***SAVLLRSFSHP*******************ISFGRFMSESLAWEKWSTFSHNRYLEEVERFSKPGTVAEKKAYFEAHYKKKAAMKAAAAV**********************************HMAIKEQKEQRFSHTCADSH*****************************************************AVIEYAVNVE*************************************************************************************************************************************************************************************************************RSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNA******************************************************************************************************************
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGESAVLLRSFSHPSDASREVREGDPIRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVERFSKPGTVAEKKAYFEAHYKKKAAMKAAAAVEEANAAANEIPGLKTTTEILDNSPTDTDSAKENRHMAIKEQKEQRFSHTCADSHMDTVTADEISHVVADDFLKSESPNAEVAPTEANVCYSINTEYDLGDADLKKGEAVIEYAVNVENPTQDDNLKQLQNPDCHYKIEASSLERMPNKEVADEENSASSSKKKLASCSSKLPSESGLSRFVSYKTNHASSLPAARNVNNITASNEEAVGDSNGKKRVVPKSLQKSFIFSPRTTETSKASLKKPKDSSTPIRTPTRASVNGISMHLSKLFQSEDKRSKIAIGSSVSGGITEAGRLQSPSPDLKSSTSNGSKRRSPCITSPFSFRSEERVAKRKEFxxxxxxxxxxxxxxxxxxxxxSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKLGGKPRPTPTVVLDSSSRPPRKPSVNTESSKTCSVTSLPKLGRRPTSNTVQDAHARPLWRSLMKHYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query597 2.2.26 [Sep-21-2011]
Q8GYX9286 Protein WVD2-like 1 OS=Ar no no 0.142 0.297 0.347 4e-09
Q84ZT9202 Protein WAVE-DAMPENED 2 O no no 0.165 0.490 0.303 2e-06
>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1 Back     alignment and function desciption
 Score = 63.9 bits (154), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 33/118 (27%)

Query: 414 SFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKD 473
           +FRS +R  KRKE++QKLEEKN+A EAE+ +LE+R KD+ +  +K+++++  F+AK    
Sbjct: 127 TFRSAQRAEKRKEYYQKLEEKNQALEAERNELEQRQKDEQEAALKQLRKNLKFKAKP--- 183

Query: 474 LCCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKL 531
                 +PN + +   A+ ++KKL                        PL +P SPKL
Sbjct: 184 ------VPNFYYEAPPAKPELKKL------------------------PLTRPKSPKL 211




Microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules. Modulates both rotational polarity and anisotropic cell expansion during organ growth. Promotes clockwise root and etiolated hypocotyls coiling, clockwise leaf curling, but left-handed petiole twisting.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84ZT9|WVD2_ARATH Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
255547916481 conserved hypothetical protein [Ricinus 0.673 0.835 0.472 3e-76
297738325621 unnamed protein product [Vitis vinifera] 0.730 0.702 0.423 3e-68
359473547680 PREDICTED: uncharacterized protein LOC10 0.797 0.7 0.399 2e-63
449494498528 PREDICTED: uncharacterized protein LOC10 0.733 0.829 0.396 3e-58
449450405528 PREDICTED: uncharacterized protein LOC10 0.733 0.829 0.396 3e-58
296081318567 unnamed protein product [Vitis vinifera] 0.854 0.899 0.332 2e-53
224055665547 predicted protein [Populus trichocarpa] 0.770 0.840 0.336 3e-50
255571990543 conserved hypothetical protein [Ricinus 0.782 0.860 0.328 2e-47
359488656528 PREDICTED: uncharacterized protein LOC10 0.788 0.892 0.318 2e-40
224107697331 predicted protein [Populus trichocarpa] 0.495 0.894 0.378 2e-34
>gi|255547916|ref|XP_002515015.1| conserved hypothetical protein [Ricinus communis] gi|223546066|gb|EEF47569.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 204/432 (47%), Positives = 279/432 (64%), Gaps = 30/432 (6%)

Query: 23  EGDPIRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVERFSKPGTVAEKKAYFEAHYK 82
           +GDP+RALTESISFGRFMSESLAWEKWSTFSHNRYLEEVE+FSKPG+VA+KKAYFEAHYK
Sbjct: 5   QGDPLRALTESISFGRFMSESLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFEAHYK 64

Query: 83  KKAAMKAAAAVEEANAAANEIPGLKTTTEILDNSPTDTDSAKENRHMAIKEQKEQRFSHT 142
           K+AAMKAAA++E+AN   + IP ++T + +      + D+A +                T
Sbjct: 65  KRAAMKAAASLEQANNVVSTIPEVETASNL-----AEVDAADK----------------T 103

Query: 143 CADSHMDTVTADEISHVVADDFLKSESPNAEVAP--TEANVCYSINTEYDLGDADLKKGE 200
             DS MD+++A+  +    D   K +  ++   P   +AN  Y+ + +     A ++  E
Sbjct: 104 QNDSPMDSISAEATNTAALD---KQQEKDSLKLPHSADANSFYTDDGKDSSQIAIVESAE 160

Query: 201 AVIEYAVNVENPTQDDNLKQLQNPDCHYKIEASSLERMPNKEVADEENSASSSKKKLASC 260
             I+  V +EN TQ +N KQL N +   KI AS+ E+M NK  A+++NSA  S K+  + 
Sbjct: 161 VAIQETVELENLTQVENSKQLDNANDFDKIVASAEEKMSNKNAAEQKNSALPSNKRQMNL 220

Query: 261 SSKLPSESGLSRFVSYKTNHASSLPAARNVNNITASNEEAVGDSNGKKRVVPKSLQKSFI 320
           SSKL ++   S+     T   SS    +   N+  ++++++GD   +KR+ PKS+  S  
Sbjct: 221 SSKLSNQGRASKLPKSSTKQPSS-AQLKGATNVHPNSKKSLGDMIDRKRLAPKSVHMSIN 279

Query: 321 FSPRTTETSKASLKKPKDSSTPIRTPTRASVNGISMHLSKLFQ-SEDKRSKIAIGSSVSG 379
            +PR+ ETSK+S +  K+SST  + P RASV GIS  LS + + SE+KR++  +  SVSG
Sbjct: 280 LAPRSGETSKSSARMSKESSTTPKNP-RASVFGISKLLSSINRSSEEKRTRSFLNKSVSG 338

Query: 380 GITEAGRLQSPSPD-LKSSTSNGSKRRSPCITSPFSFRSEERVAKRKEFFQKLEEKNKAK 438
           G    G LQ+ S D  KSS+SNGSK RS  I+SPFSFRSEER AKRKEFFQKLEEKN AK
Sbjct: 339 GTIAGGILQALSGDRTKSSSSNGSKERSSIISSPFSFRSEERAAKRKEFFQKLEEKNSAK 398

Query: 439 EAEKGQLERRSK 450
           E EK +++ +SK
Sbjct: 399 EVEKTRVQVKSK 410




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738325|emb|CBI27526.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473547|ref|XP_002267575.2| PREDICTED: uncharacterized protein LOC100251196 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449494498|ref|XP_004159562.1| PREDICTED: uncharacterized protein LOC101225983 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450405|ref|XP_004142953.1| PREDICTED: uncharacterized protein LOC101204130 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296081318|emb|CBI17700.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055665|ref|XP_002298592.1| predicted protein [Populus trichocarpa] gi|222845850|gb|EEE83397.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571990|ref|XP_002526936.1| conserved hypothetical protein [Ricinus communis] gi|223533688|gb|EEF35423.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359488656|ref|XP_002267994.2| PREDICTED: uncharacterized protein LOC100261110 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107697|ref|XP_002314567.1| predicted protein [Populus trichocarpa] gi|222863607|gb|EEF00738.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
TAIR|locus:2092115533 AT3G26050 "AT3G26050" [Arabido 0.810 0.908 0.279 2.7e-36
TAIR|locus:2082364391 AT3G01710 "AT3G01710" [Arabido 0.118 0.181 0.564 7.8e-22
TAIR|locus:2168768303 AT5G40700 "AT5G40700" [Arabido 0.128 0.254 0.551 1.3e-20
TAIR|locus:2013985478 AT1G70950 "AT1G70950" [Arabido 0.075 0.094 0.711 1.9e-18
TAIR|locus:2032487540 AT1G24160 "AT1G24160" [Arabido 0.095 0.105 0.542 4.4e-11
TAIR|locus:2201240367 MDP40 "AT1G23060" [Arabidopsis 0.075 0.122 0.644 2.9e-10
TAIR|locus:2020623504 AT1G70100 "AT1G70100" [Arabido 0.080 0.095 0.604 1.1e-09
TAIR|locus:2039235432 AT2G35880 "AT2G35880" [Arabido 0.502 0.694 0.233 1.6e-06
TAIR|locus:2040090403 AT2G25480 "AT2G25480" [Arabido 0.360 0.533 0.242 1.4e-05
TAIR|locus:2127771437 AT4G32330 "AT4G32330" [Arabido 0.474 0.647 0.225 4.6e-05
TAIR|locus:2092115 AT3G26050 "AT3G26050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 149/534 (27%), Positives = 246/534 (46%)

Query:     1 MGESAVLLRSFSHPSD-ASREVREGDPIRALTESISFGRFMSESLAWEKWSTFSHNRYLE 59
             MGES  L+RSFS PS+ +SRE+ E  P R LTES+SFGR+ +E+LAW +WS F+ NRYLE
Sbjct:     1 MGESICLVRSFSQPSEFSSREINEVVPNRVLTESVSFGRYANETLAWARWSAFTQNRYLE 60

Query:    60 EVERFSKPGTVAEKKAYFXXXXXXXXXXXXXXXXXXXXXXXXXIPGLKTTTEILDNSPTD 119
             EVERF+KPG+VAEKKA+F                            +K + EI+ + P D
Sbjct:    61 EVERFTKPGSVAEKKAFFEAHFKNRASGKAATQTKKIEQVK-----VKDSVEIVCDIPKD 115

Query:   120 TDSAKENRHMAIKEQKEQRFSHTCADSHMDTVTADEISHVVADDFLKSESPNAEVAPTEA 179
                      + +  +     +   + + +D+V    IS  V D+  K E+  + V P E 
Sbjct:   116 ---------ILVDSEVPLAVNREVSSNEVDSVVPS-IS--VIDETGKVENLKSVVVPDEG 163

Query:   180 NVCYSINTEYDLGDADLKKGEAVIEYAVNVENPTQDDNLKQLQNPDCHYKIEAS-SLERM 238
             N   S++ E     +  K   + +E +V +E      N K+  +      + AS +  R 
Sbjct:   164 NST-SLSKERPPSSSGSKVSSSKLESSVVIELDHSLKNTKKESSSSSTRSLSASKNRSRS 222

Query:   239 PNKEVADEENXXXXXXXXXXXXXXXXXXESGLSRFVSYKTNHASSLPAARNVNNITA-SN 297
             P + +    +                       +    K +  SS+  + N  + T  + 
Sbjct:   223 PPEPIHMSISCVSSSNTEKTIVGRPQNGSRSAVKADKKKRSGPSSVHMSLNFASSTLRTT 282

Query:   298 EEAVGD--SNGKKRVVPKSLQKSFIFSPRTTETSKA--SLKKPKDSSTPIRTPTRASVNG 353
             +EA      N   +    +  ++ +F P+  E + A  S K+P   ++   +   ++V  
Sbjct:   283 KEAPKTLARNSTTQGTTSTNARNKLF-PKINEPTGALKSCKRPLSQTSKDGSTNASAVTL 341

Query:   354 ISMHLSKLFQSEDKRSKIAIGSSVSGGITEAGRLQSPSPDLKS-STSNGSKRRSPCITSP 412
               + L     SE+KR  I++ SSVS  I+     + PS   ++ ST + +K +S  ++SP
Sbjct:   342 PRLPLLSNLLSENKRKNISVRSSVSCRISN-NEQRKPSVGCENLSTHSRTKAKSLTVSSP 400

Query:   413 FSFRSEERVAKRKEFFQKLXXXXXXXXXXXGQLERRSKDKAQCDIKKVQQSTSFEAKQNK 472
             F FRS+ER  KRKEFF+K+              ++  +DK  C  K   Q+T+  ++++K
Sbjct:   401 FVFRSDERAEKRKEFFKKVEEKN----------KKEKEDKFSCGFK-ANQNTNLASEEHK 449

Query:   473 DLCCGSH------LPNAHMKKEQA--EHDIKKLRQSTGFKSISSANCPLTTKQI 518
             +   G        L +   ++ Q   + +IKK  Q T  K+ SS    + TK++
Sbjct:   450 NPQVGGFQVTPMTLTSPRFRRNQTPGKENIKKPHQ-TPHKA-SSMKI-INTKKV 500




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2082364 AT3G01710 "AT3G01710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168768 AT5G40700 "AT5G40700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013985 AT1G70950 "AT1G70950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032487 AT1G24160 "AT1G24160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201240 MDP40 "AT1G23060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020623 AT1G70100 "AT1G70100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039235 AT2G35880 "AT2G35880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040090 AT2G25480 "AT2G25480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127771 AT4G32330 "AT4G32330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
pfam0688657 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2 4e-09
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2) Back     alignment and domain information
 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 415 FRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAK 469
             S+ER  KR EF +KLEEK KA EAEK + E R K++ +  IK++++    +A 
Sbjct: 1   LHSDERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKELVPKAN 55


This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way. Length = 57

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 597
PF0688657 TPX2: Targeting protein for Xklp2 (TPX2); InterPro 99.72
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2) Back     alignment and domain information
Probab=99.72  E-value=7.3e-18  Score=135.05  Aligned_cols=57  Identities=42%  Similarity=0.622  Sum_probs=56.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccC
Q 007592          415 FRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQN  471 (597)
Q Consensus       415 frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPm  471 (597)
                      |+||+||++|+|||+||+||.+++|+++.+++++++++++++|++|||+|+|||+||
T Consensus         1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm   57 (57)
T PF06886_consen    1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM   57 (57)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            799999999999999999999999999999999999999999999999999999998



Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 7e-09
 Identities = 47/259 (18%), Positives = 81/259 (31%), Gaps = 61/259 (23%)

Query: 3   ESAVLLRSFSH--PSDASREVREGDPIRALTESISFGRFMSESLA-WEKWSTFSHNRYLE 59
           E   LL  +    P D  REV   +P      SI     + + LA W+ W   + ++   
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNP---RRLSI-IAESIRDGLATWDNWKHVNCDKLTT 357

Query: 60  EVERFSKPGTVAEKKAYFEAHYKKKAAMKAAAAV--EEANAAANEIPGLKTTTEIL--DN 115
            +E        AE +  F+             +V    A+     IP       ++  D 
Sbjct: 358 IIESSLNVLEPAEYRKMFD-----------RLSVFPPSAH-----IP--TILLSLIWFDV 399

Query: 116 SPTDT-DSAKE--NRHMAIKEQKEQRFS-HTCADSHMDT-VTADEIS--H---VVADDFL 165
             +D      +     +  K+ KE   S       +++  V  +     H   V   +  
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 166 KSESPNAEVAPTEANVCYS------INTEYDLGDA-------DLKKGEAVIEYAVNVENP 212
           K+   +  + P      YS       N E+            D +  E  I +     N 
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 213 TQD--DNLKQLQNPDCHYK 229
           +    + L+QL+     YK
Sbjct: 517 SGSILNTLQQLKF----YK 531


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00