Citrus Sinensis ID: 007593

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------

MVFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

ccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccEEEEEEccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEEEEEccccEEEEEEEcccccccHHHcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHcccccEEEEccEEEccccccccccEEEEEc

cEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHcccHHHHHEEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEcccccccccEEEEEEccccccEEEEEEcHHHHHHHHHcHHEHEEEccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEcccccEEEcccccccEEEEEEEccccccEEEEEEcccccHHHHHHHccccHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEEccccccccHHHcccccccEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEcccccEEEEcccHHHHHHHHHHccccEEEEEccEEEccccEcccccEEEEEc

mvfefsyalppaKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasddesftTFDEHVLSMKDLLEAvvpfdilsDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLIStsyipgmeVTLSSRLKSLYSIFSKmrrkdvgihkvydARALRVVvgdkngtlhgpaiQCCYSLLDIVHrlwipidgefddyivnpkpsgyqslhtavqgpdgsalEVQIRTQKMHEYAEHGLAAHWLYKetgnklqsissmdesdieassslskdtddhnpldtdlfqkysslkmghpvirveGSNLLAAVIIRVEKGGRELLVAVSFGLAASevvadrrpsfqiKCWEAYARLYKKasdewwcqpghgdwctclekytlcrdgmyhkqdqfgrlLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeaSINNKVRLLRTMLRWEEQLRSEASLRQSklggkangnpdsvvpgevvivcwpngeimrlrsgstaADAAMKVGLEGKLVLVNgqlvlpntelkdgdivevrv

mvfefsyalppAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAsmwsprnrvgysrrittivssppldertasdDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDlaksseaqkkaKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSkmrrkdvgihkvydARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSslskdtddhnpLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGlaasevvadrrpsfQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFegkpvdsvvsrrssdsvaptsmeasinnkVRLLRTMLRWEEQLRSEASLrqsklggkangnpdsvvpGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGqlvlpntelkdgdivevrv

MVFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPvdsvvsrrssdsvAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

****FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIV****************TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLH************KVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA*******ALEVQIRTQKMHEYAEHGLAAHWLYKE***********************************LFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK**************************VRLLRTMLRW*************************VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTEL**********

**FEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR*************GYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK***************************DDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADR**SFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFE****************************************************************VPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

MVFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSS**********DAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS********************DHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVD***************MEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

MVFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEG*********************ASINNKVRLLRTMLRWEEQLRSEASL**SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		597	2.2.26 [Sep-21-2011]
P0A0E9		736	GTP pyrophosphokinase OS=	yes	no	0.229	0.186	0.416	8e-28
P0A0F0		736	GTP pyrophosphokinase OS=	yes	no	0.229	0.186	0.416	8e-28
Q6G8T5		736	GTP pyrophosphokinase OS=	yes	no	0.229	0.186	0.416	8e-28
Q99TL8		736	GTP pyrophosphokinase OS=	yes	no	0.229	0.186	0.416	8e-28
Q6GG70		736	GTP pyrophosphokinase OS=	yes	no	0.229	0.186	0.416	8e-28
Q931Q4		736	GTP pyrophosphokinase OS=	yes	no	0.229	0.186	0.416	8e-28
Q8CS97		729	GTP pyrophosphokinase OS=	yes	no	0.211	0.172	0.427	1e-27
Q5HNR8		729	GTP pyrophosphokinase OS=	yes	no	0.211	0.172	0.427	1e-27
P0AG23		744	GTP pyrophosphokinase OS=	yes	no	0.194	0.155	0.464	1e-27
P0AG20		744	GTP pyrophosphokinase OS=	N/A	no	0.194	0.155	0.464	1e-27

>sp\|P0A0E9\|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1	Back alignment and function desciption

 Score =  125 bits (315), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)

Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
            +E  ++ R K +YSI+ KM ++     +++D  A+RV+V          +I  CY++L 
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290

Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
           +VH LW P+ G F DYI  PK + YQSLHT V GP+G  LE+QIRT  MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350

Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
           W YKE            NKL  +  + E+D  +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386

In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp.
Staphylococcus aureus (strain MW2) (taxid: 196620)
EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5

>sp\|P0A0F0\|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q6G8T5\|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q99TL8\|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2	Back alignment and function description

>sp\|Q6GG70\|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q931Q4\|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2	Back alignment and function description

>sp\|Q8CS97\|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|Q5HNR8\|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1	Back alignment and function description

>sp\|P0AG23\|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1	Back alignment and function description

>sp\|P0AG20\|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
297737338		868	unnamed protein product [Vitis vinifera]	0.989	0.680	0.752	0.0
357481159		889	GTP pyrophosphokinase [Medicago truncatu	0.986	0.662	0.689	0.0
449483240		875	PREDICTED: uncharacterized LOC101208449	0.984	0.672	0.715	0.0
449439043		706	PREDICTED: uncharacterized protein LOC10	0.984	0.832	0.715	0.0
255557973		806	guanosine-3',5'-bis(diphosphate) 3'-pyro	0.892	0.661	0.712	0.0
225454821		816	PREDICTED: uncharacterized protein LOC10	0.892	0.653	0.678	0.0
356495744		782	PREDICTED: uncharacterized protein LOC10	0.886	0.676	0.675	0.0
356538795		793	PREDICTED: uncharacterized protein LOC10	0.886	0.667	0.671	0.0
297599793		868	Os02g0699400 [Oryza sativa Japonica Grou	0.983	0.676	0.631	0.0
222623497		808	hypothetical protein OsJ_08040 [Oryza sa	0.983	0.726	0.631	0.0

>gi\|297737338\|emb\|CBI26539.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/603 (75%), Positives = 512/603 (84%), Gaps = 12/603 (1%)

Query: 7   YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
           YALP  KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ F +MRADLASMWS
Sbjct: 266 YALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQTFLQMRADLASMWS 325

Query: 67  PRNRVGYSRRITTIVSSP-PLDER-TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 124
           P NR G  RR     SSP PL+E+  A D E     D  V SMKDLLEAV+PFDIL DRR
Sbjct: 326 PSNRSGNPRRTAAKDSSPVPLNEKEIAFDYEGSLAVDADVTSMKDLLEAVLPFDILLDRR 385

Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
           KR  FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+PGMEVTLSSR
Sbjct: 386 KRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERELLISTSYVPGMEVTLSSR 445

Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
           LKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL I+HRLW PI
Sbjct: 446 LKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLLSIIHRLWTPI 505

Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
           DGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAAHWLYKET NK
Sbjct: 506 DGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETENK 565

Query: 305 LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIR 364
           L S S +D+S+I+ASS  S+D ++ N +  D+FQKY SLK GHPV+RVEGS+LLAAV++R
Sbjct: 566 LPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEGSHLLAAVVVR 625

Query: 365 VEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTC 424
           V+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDWCTC
Sbjct: 626 VDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWFEPGHGDWCTC 685

Query: 425 LEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVS--- 481
           LEKYTLCRDGMYHK+DQF RLLPTFIQ+  LTE+EESEYWAVVSA+FEGK + S+ S   
Sbjct: 686 LEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGKQIASIESHSN 745

Query: 482 -----RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SKLGGKANGNPD 534
                R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ  +K+G      P 
Sbjct: 746 SSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTKVGADPYSTPK 805

Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
           SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPNT+LKDGD+VE
Sbjct: 806 SVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVE 865

Query: 595 VRV 597
           VR+
Sbjct: 866 VRM 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357481159\|ref\|XP_003610865.1\| GTP pyrophosphokinase [Medicago truncatula] gi\|355512200\|gb\|AES93823.1\| GTP pyrophosphokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449483240\|ref\|XP_004156531.1\| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449439043\|ref\|XP_004137297.1\| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255557973\|ref\|XP_002520015.1\| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi\|223540779\|gb\|EEF42339.1\| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225454821\|ref\|XP_002274363.1\| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356495744\|ref\|XP_003516733.1\| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]	Back alignment and taxonomy information

>gi\|356538795\|ref\|XP_003537886.1\| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]	Back alignment and taxonomy information

>gi\|297599793\|ref\|NP_001047830.2\| Os02g0699400 [Oryza sativa Japonica Group] gi\|255671187\|dbj\|BAF09744.2\| Os02g0699400 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|222623497\|gb\|EEE57629.1\| hypothetical protein OsJ_08040 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
TIGR_CMR\|DET_0005		728	DET_0005 "GTP pyrophosphokinas	0.201	0.164	0.515	3.5e-39
UNIPROTKB\|Q3A9Z8		716	relA "GTP pyrophosphokinase" [	0.211	0.175	0.471	2.8e-37
TIGR_CMR\|CHY_2223		716	CHY_2223 "GTP pyrophosphokinas	0.211	0.175	0.471	2.8e-37
TIGR_CMR\|GSU_2236		716	GSU_2236 "GTP pyrophosphokinas	0.212	0.177	0.455	9.8e-37
UNIPROTKB\|Q4K899		747	relA "GTP diphosphokinase" [Ps	0.201	0.160	0.527	3e-36
TIGR_CMR\|CBU_1375		714	CBU_1375 "GTP pyrophosphokinas	0.231	0.193	0.456	9.9e-34
TIGR_CMR\|BA_4637		727	BA_4637 "GTP pyrophosphokinase	0.206	0.169	0.458	1.1e-33
TIGR_CMR\|SO_3455		735	SO_3455 "GTP pyrophosphokinase	0.201	0.163	0.492	7.6e-32
UNIPROTKB\|P0AG20		744	relA "GDP pyrophosphokinase /	0.194	0.155	0.464	1.7e-30
TIGR_CMR\|CPS_4115		737	CPS_4115 "GTP pyrophosphokinas	0.201	0.162	0.476	1.8e-30

TIGR_CMR\|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

 Score = 316 (116.3 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
 Identities = 68/132 (51%), Positives = 82/132 (62%)

Query:   176 GMEVTLSSRLKSLYSIFSKMRR-KDVG--IHKVYDARALRVVVGDKNGTLHGPAIQCCYS 232
             G++V LS R K LYSI+ KM +    G     +YD  ALRV+V D         I  CY 
Sbjct:   238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288

Query:   233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
              + IVH LW PI G FDDYI NPKP+GYQSLHTAV     + LEVQ+RT +MH  AE+G+
Sbjct:   289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348

Query:   293 AAHWLYKETGNK 304
             AAHW YK  G +
Sbjct:   349 AAHWRYKTAGKE 360

GO:0008728 "GTP diphosphokinase activity" evidence=ISS

GO:0015968 "stringent response" evidence=ISS

UNIPROTKB\|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4K899 relA "GTP diphosphokinase" [Pseudomonas protegens Pf-5 (taxid:220664)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1375 CBU_1375 "GTP pyrophosphokinase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_3455 SO_3455 "GTP pyrophosphokinase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P0AG20 relA "GDP pyrophosphokinase / GTP pyrophosphokinase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4115 CPS_4115 "GTP pyrophosphokinase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.6	LOW CONFIDENCE prediction!
4th Layer	2.7.6.5	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		597
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	2e-49
smart00954		111	smart00954, RelA_SpoT, Region found in RelA / SpoT	1e-45
TIGR00691		683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	4e-42
pfam04607		116	pfam04607, RelA_SpoT, Region found in RelA / SpoT	1e-40
PRK10872		743	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos	5e-35
PRK11092		702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	1e-31
cd05399		129	cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (	1e-28
COG2357		231	COG2357, COG2357, PpGpp synthetase catalytic domai	3e-11
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	3e-10
TIGR00691		683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	5e-10
cd01668		60	cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S	4e-09
pfam02824		60	pfam02824, TGS, TGS domain	8e-08
PRK11092		702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	6e-07
cd01616		60	cd01616, TGS, The TGS domain, named after the ThrR	1e-05
COG2104		68	COG2104, ThiS, Sulfur transfer protein involved in	2e-04
PRK10872		743	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos	9e-04
COG0317		701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	0.003

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

 Score =  182 bits (464), Expect = 2e-49
 Identities = 69/129 (53%), Positives = 90/129 (69%), Gaps = 9/129 (6%)

Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
           G++  +S R K +YSI+ KM++K +   ++YD RA+R++V           I  CY+ L 
Sbjct: 233 GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALG 283

Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
           IVH LW PI GEFDDYI NPKP+GYQSLHT V GP+G  +EVQIRT++MHE AE G+AAH
Sbjct: 284 IVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAH 343

Query: 296 WLYKETGNK 304
           W YKE G+ 
Sbjct: 344 WRYKEGGSA 352

Length = 701

>gnl\|CDD\|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins	Back alignment and domain information

>gnl\|CDD\|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>gnl\|CDD\|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins	Back alignment and domain information

>gnl\|CDD\|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	Back alignment and domain information

>gnl\|CDD\|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>gnl\|CDD\|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>gnl\|CDD\|217243 pfam02824, TGS, TGS domain	Back alignment and domain information

>gnl\|CDD\|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>gnl\|CDD\|225015 COG2104, ThiS, Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		597
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	100.0
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	100.0
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	100.0
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	100.0
KOG1157		543	consensus Predicted guanosine polyphosphate pyroph	100.0
cd05399		129	NT_Rel-Spo_like Nucleotidyltransferase (NT) domain	99.95
PF04607		115	RelA_SpoT: Region found in RelA / SpoT proteins; I	99.95
COG2357		231	PpGpp synthetase catalytic domain [General functio	99.93
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	99.64
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	99.63
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	99.54
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	99.49
PF02824		60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	99.15
cd01668		60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	98.69
PRK01777		95	hypothetical protein; Validated	98.59
PF14451		81	Ub-Mut7C: Mut7-C ubiquitin	98.42
cd01666		75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	98.33
PRK06437		67	hypothetical protein; Provisional	98.18
PRK05659		66	sulfur carrier protein ThiS; Validated	98.17
cd01616		60	TGS The TGS domain, named after the ThrRS, GTPase,	98.15
cd00565		65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	98.14
cd01669		76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	98.12
PRK06944		65	sulfur carrier protein ThiS; Provisional	98.1
PF02824		60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	98.09
PRK08364		70	sulfur carrier protein ThiS; Provisional	98.07
COG2104		68	ThiS Sulfur transfer protein involved in thiamine	97.94
TIGR01683		64	thiS thiamine biosynthesis protein ThiS. This mode	97.92
PRK07440		70	hypothetical protein; Provisional	97.86
PRK07696		67	sulfur carrier protein ThiS; Provisional	97.72
cd00754		80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	97.64
PRK08053		66	sulfur carrier protein ThiS; Provisional	97.63
PRK06488		65	sulfur carrier protein ThiS; Validated	97.51
PLN02799		82	Molybdopterin synthase sulfur carrier subunit	97.5
PF03658		84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	97.43
cd01667		61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	97.4
PRK05863		65	sulfur carrier protein ThiS; Provisional	97.3
cd01666		75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	97.25
PF02597		77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	97.11
cd01669		76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	97.09
PRK06083		84	sulfur carrier protein ThiS; Provisional	97.06
TIGR01682		80	moaD molybdopterin converting factor, subunit 1, n	96.93
COG2914		99	Uncharacterized protein conserved in bacteria [Fun	96.49
cd04938		76	TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma	96.38
TIGR01687		88	moaD_arch MoaD family protein, archaeal. Members o	96.33
PF14453		57	ThiS-like: ThiS-like ubiquitin	96.05
PRK09602		396	translation-associated GTPase; Reviewed	95.99
PRK11130		81	moaD molybdopterin synthase small subunit; Provisi	95.71
cd01764		94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	95.45
PRK14707		2710	hypothetical protein; Provisional	94.5
PRK12444		639	threonyl-tRNA synthetase; Reviewed	93.96
cd01668		60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	93.86
PLN02908		686	threonyl-tRNA synthetase	91.52
cd01616		60	TGS The TGS domain, named after the ThrRS, GTPase,	90.85
COG1163		365	DRG Predicted GTPase [General function prediction	89.45
PRK09602		396	translation-associated GTPase; Reviewed	89.4
PRK09169		2316	hypothetical protein; Validated	89.22
PTZ00258		390	GTP-binding protein; Provisional	88.89
PRK01777		95	hypothetical protein; Validated	88.07
TIGR02988		59	YaaA_near_RecF S4 domain protein YaaA. This small	86.85
PRK14707		2710	hypothetical protein; Provisional	85.94
PRK05659		66	sulfur carrier protein ThiS; Validated	85.13
PF03658		84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	84.04
cd01667		61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	82.96
COG1977		84	MoaD Molybdopterin converting factor, small subuni	82.69
PF01479		48	S4: S4 domain; InterPro: IPR002942 Ribosomes are t	81.43
PF13510		82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	80.43
smart00363		60	S4 S4 RNA-binding domain.	80.09

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.2e-88  Score=758.15  Aligned_cols=328  Identities=35%  Similarity=0.590  Sum_probs=289.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593            4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS   83 (597)
Q Consensus         4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (597)
                      |+..++|++||.+||+|||+||||||||||||.+|+|||||||+||+|+.|+.|.+.|.+                    
T Consensus       150 rtl~~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e--------------------  209 (701)
T COG0317         150 RTLKNLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE--------------------  209 (701)
T ss_pred             ccCccCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH--------------------
Confidence            556778899999999999999999999999999999999999999999999999999875                    


Q ss_pred             CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593           84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL  163 (597)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L  163 (597)
                                                            .|.+|+.+++++...                      +++.|
T Consensus       210 --------------------------------------~r~~re~~i~~~~~~----------------------l~~~L  229 (701)
T COG0317         210 --------------------------------------KRLEREQYIENVVSE----------------------LREEL  229 (701)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence                                                  678888999887543                      45566


Q ss_pred             HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593          164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP  243 (597)
Q Consensus       164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p  243 (597)
                      .+.         |++++|+||+||+||||+||++|+..|++|+|++||||||++         +.|||++||+||.+|+|
T Consensus       230 ~~~---------gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp  291 (701)
T COG0317         230 KAA---------GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKP  291 (701)
T ss_pred             HHc---------CCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcC
Confidence            654         899999999999999999999999999999999999999997         78999999999999999


Q ss_pred             cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCccccccccccchHhhhccCC
Q 007593          244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLS  323 (597)
Q Consensus       244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~~lle  323 (597)
                      +|+|||||||+||+||||||||||.||.|.++||||||+.||..||+|+||||.||+++.      ...+.+.+++.|++
T Consensus       292 ~PgrFKDYIA~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~------~~~~~~~Wlr~lle  365 (701)
T COG0317         292 IPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS------AYEEKIAWLRQLLE  365 (701)
T ss_pred             CCCccccccccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCc------hhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999762      33444555555555


Q ss_pred             CCCCCCCCCCcccccccccccCCCCeeeecCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC-----C-ccC
Q 007593          324 KDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF-----Q-IKC  397 (597)
Q Consensus       324 ~d~e~~~~~k~~vftPk~~Lp~Gat~LdfiG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~-----p-~~~  397 (597)
                      ...+..                                      |..+|+..++.+| ..|+|+||||||     | +++
T Consensus       366 ~q~~~~--------------------------------------d~~ef~e~~k~dl-f~d~VyvfTPkG~vi~LP~Gat  406 (701)
T COG0317         366 WQEESA--------------------------------------DSGEFLEQLKSDL-FPDRVYVFTPKGKVIDLPKGAT  406 (701)
T ss_pred             HHHhcC--------------------------------------CcHHHHHHHhhcc-cCceEEEECCCCCEEeCCCCCc
Confidence            310000                                      1223455566666 679999999999     3 899


Q ss_pred             hhhHHH-hhhccccccccCCCCCcccccccccccccCcEEecccCCCCcccceeeccccchhhhhhhhhhhccccCCceE
Q 007593          398 WEAYAR-LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPV  476 (597)
Q Consensus       398 WL~fa~-t~k~~~~~~~~~~g~~~~~~~~~~~~~c~~~~~~~~~~~~r~~p~~~~l~~l~~~~~~~~~~~~~~~~~G~~v  476 (597)
                      +||||| +|        |++||           +|+||||   |  ||++|++++|                  ++||+|
T Consensus       407 plDFAY~vH--------t~iG~-----------~c~gAkV---n--G~ivpl~~~L------------------k~Gd~V  444 (701)
T COG0317         407 PLDFAYAVH--------TDIGH-----------RCIGAKV---N--GRIVPLTTKL------------------QTGDQV  444 (701)
T ss_pred             chhhhhhhh--------chhcc-----------eeeEEEE---C--CEEeccceec------------------CCCCEE
Confidence            999999 99        99999           9999999   9  9999999999                  999999


Q ss_pred             EEEecCCCCCCCCCCCchhhcccchhHHHh------HHHHHHhhhhHHHHHhcccC
Q 007593          477 DSVVSRRSSDSVAPTSMEASINNKVRLLRT------MLRWEEQLRSEASLRQSKLG  526 (597)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~ln~~l~~LrT------~RqW~kq~~ree~i~~g~~~  526 (597)
                      ||+|++.      ++|+.||||    ||+|      +|+|||++.+++++..|+..
T Consensus       445 EIit~k~------~~Ps~~Wl~----~v~t~kAR~kIr~~~k~~~re~~i~~G~~l  490 (701)
T COG0317         445 EIITSKH------AGPSRDWLN----FVVTSRARAKIRAWFKKQDRDENVEAGREL  490 (701)
T ss_pred             EEEeCCC------CCCCHHHHH----HHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999998      689999999    7776      39999999999999988844

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]	Back alignment and domain information

>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases	Back alignment and domain information

>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat	Back alignment and domain information

>COG2357 PpGpp synthetase catalytic domain [General function prediction only]	Back alignment and domain information

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []	Back alignment and domain information

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>PRK01777 hypothetical protein; Validated	Back alignment and domain information

>PF14451 Ub-Mut7C: Mut7-C ubiquitin	Back alignment and domain information

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2	Back alignment and domain information

>PRK06437 hypothetical protein; Provisional	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein	Back alignment and domain information

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea	Back alignment and domain information

>PRK06944 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []	Back alignment and domain information

>PRK08364 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>TIGR01683 thiS thiamine biosynthesis protein ThiS	Back alignment and domain information

>PRK07440 hypothetical protein; Provisional	Back alignment and domain information

>PRK07696 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins	Back alignment and domain information

>PRK08053 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK06488 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PLN02799 Molybdopterin synthase sulfur carrier subunit	Back alignment and domain information

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function	Back alignment and domain information

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA	Back alignment and domain information

>PRK05863 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2	Back alignment and domain information

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer	Back alignment and domain information

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea	Back alignment and domain information

>PRK06083 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal	Back alignment and domain information

>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF	Back alignment and domain information

>TIGR01687 moaD_arch MoaD family protein, archaeal	Back alignment and domain information

>PF14453 ThiS-like: ThiS-like ubiquitin	Back alignment and domain information

>PRK09602 translation-associated GTPase; Reviewed	Back alignment and domain information

>PRK11130 moaD molybdopterin synthase small subunit; Provisional	Back alignment and domain information

>cd01764 Urm1 Urm1-like ubuitin domain	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PRK12444 threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response	Back alignment and domain information

>PLN02908 threonyl-tRNA synthetase	Back alignment and domain information

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin	Back alignment and domain information

>COG1163 DRG Predicted GTPase [General function prediction only]	Back alignment and domain information

>PRK09602 translation-associated GTPase; Reviewed	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PTZ00258 GTP-binding protein; Provisional	Back alignment and domain information

>PRK01777 hypothetical protein; Validated	Back alignment and domain information

>TIGR02988 YaaA_near_RecF S4 domain protein YaaA	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function	Back alignment and domain information

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA	Back alignment and domain information

>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]	Back alignment and domain information

>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A	Back alignment and domain information

>smart00363 S4 S4 RNA-binding domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		597
1vj7_A		393	Crystal Structure Of The Bifunctional Catalytic Fra		3e-23

>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393

Back alignment and structure

Iteration: 1

Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 10/125 (8%) Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235 G+ + R K +YSI+ KMR K +++D A+R V+ ++ Y+++ Sbjct: 233 GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSD---------VYAMVG 283 Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295 +H LW P+ G F DYI PK +GYQS+HT V GP G +E+QIRT++MH+ AE+G+AAH Sbjct: 284 YIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGP-IEIQIRTKEMHQVAEYGVAAH 342 Query: 296 WLYKE 300 W YK+ Sbjct: 343 WAYKK 347

PyMOL of 1vj7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		597
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	1e-48
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	5e-13
2be3_A		226	GTP pyrophosphokinase; structural genomics, PSI, p	8e-41
3l9d_A		255	SMU.1046C, putative GTP pyrophosphokinase; transfe	2e-34
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	4e-06
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	7e-06
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	1e-04
1f0z_A		66	THis protein; ubiquitin fold, transport protein; N	2e-04
3nqw_A		179	CG11900; stringent response, pyrophosphohydrolase,	3e-04
2cu3_A		64	Unknown function protein; thermus thermophilus HB8	5e-04
3nr1_A		178	HD domain-containing protein 3; stringent response	6e-04

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393	Back alignment and structure

 Score =  173 bits (441), Expect = 1e-48
 Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 10/138 (7%)

Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
           G+   +  R K +YSI+ KMR K     +++D  A+R V+               Y+++ 
Sbjct: 233 GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVG 283

Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
            +H LW P+ G F DYI  PK +GYQS+HT V GP G  +E+QIRT++MH+ AE+G+AAH
Sbjct: 284 YIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGP-IEIQIRTKEMHQVAEYGVAAH 342

Query: 296 WLYKETGNKLQSISSMDE 313
           W YK+      + +    
Sbjct: 343 WAYKKGVRGKVNQAEQKV 360

PyMOL of 1vj7

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393	Back alignment and structure

>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226	Back alignment and structure

>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Length = 77	Back alignment and structure

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Length = 66	Back alignment and structure

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179	Back alignment and structure

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Length = 64	Back alignment and structure

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		597
1vj7_A		393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	100.0
3l9d_A		255	SMU.1046C, putative GTP pyrophosphokinase; transfe	100.0
2be3_A		226	GTP pyrophosphokinase; structural genomics, PSI, p	100.0
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	99.49
3hvz_A		78	Uncharacterized protein; alpha-beta protein, struc	98.84
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	98.78
2eki_A		93	DRG 1, developmentally-regulated GTP-binding prote	98.55
1wwt_A		88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	98.28
2l32_A		74	Small archaeal modifier protein 2; protein BIN; NM	98.27
2hj1_A		97	Hypothetical protein; structural genomics, PSI, pr	98.21
1f0z_A		66	THis protein; ubiquitin fold, transport protein; N	98.12
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	98.11
1tyg_B		87	YJBS; alpha beta barrel, protein-protein complex,	98.02
1ryj_A		70	Unknown; beta/alpha protein, structural genomics,	98.01
2cu3_A		64	Unknown function protein; thermus thermophilus HB8	97.97
2k5p_A		78	THis protein, thiamine-biosynthesis protein; NESG,	97.9
2kl0_A		73	Putative thiamin biosynthesis THis; structural gen	97.88
3po0_A		89	Small archaeal modifier protein 1; ubiquitin-like	97.68
1vjk_A		98	Molybdopterin converting factor, subunit 1; struct	97.63
2q5w_D		77	Molybdopterin converting factor, subunit 1; MOCO,	97.59
1wxq_A		397	GTP-binding protein; structural genomics, riken st	97.56
2eki_A		93	DRG 1, developmentally-regulated GTP-binding prote	97.29
1fm0_D		81	Molybdopterin convertin factor, subunit 1; molybde	97.28
2kmm_A		73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	97.09
3rpf_C		74	Molybdopterin converting factor, subunit 1 (MOAD);	97.02
2g1e_A		90	Hypothetical protein TA0895; MOAD, molybdopterin,	96.96
3dwg_C		93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	96.62
1wwt_A		88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	96.43
2l52_A		99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	96.18
2qjl_A		99	URM1, ubiquitin-related modifier 1; ubiquitin-like	96.01
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	95.67
2k9x_A		110	Tburm1, uncharacterized protein; unknown function;	95.32
1v8c_A		168	MOAD related protein; riken structural genomics/pr	95.31
1wgk_A		114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	94.29
1wxq_A		397	GTP-binding protein; structural genomics, riken st	94.26
2hj1_A		97	Hypothetical protein; structural genomics, PSI, pr	86.4
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	85.88
1rws_A		77	Hypothetical protein PF1061; residual dipolar coup	83.48
3fm8_A		124	Kinesin-like protein KIF13B; kinesin, GAP, GTPase	82.71
4ejq_A		154	Kinesin-like protein KIF1A; homodimer, FHA domain,	80.79

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8	Back alignment and structure

Probab=100.00  E-value=3.3e-63  Score=528.22  Aligned_cols=200  Identities=38%  Similarity=0.656  Sum_probs=171.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593            4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS   83 (597)
Q Consensus         4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (597)
                      |+..++|++||+++|+|||+|||||||||||+.||+|||||||+||+|+.|+.|.+.|.+                    
T Consensus       150 Rtl~~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~--------------------  209 (393)
T 1vj7_A          150 RTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE--------------------  209 (393)
T ss_dssp             HTCC------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--------------------
T ss_pred             CchhhCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH--------------------
Confidence            566889999999999999999999999999999999999999999999999999999875                    


Q ss_pred             CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593           84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL  163 (597)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L  163 (597)
                                                            .|..|+.+++.+...                      +++.|
T Consensus       210 --------------------------------------~r~~r~~~i~~i~~~----------------------l~~~L  229 (393)
T 1vj7_A          210 --------------------------------------KRREREALVDDIVTK----------------------IKSYT  229 (393)
T ss_dssp             --------------------------------------THHHHHHHHHHHHHH----------------------HHHHH
T ss_pred             --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence                                                  566777888776542                      34444


Q ss_pred             HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593          164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP  243 (597)
Q Consensus       164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p  243 (597)
                      .+         .|+++.|+||+|++||||+||+|++.+|++|+|++||||||++         +.|||.++|+||+.|+|
T Consensus       230 ~~---------~gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~  291 (393)
T 1vj7_A          230 TE---------QGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRP  291 (393)
T ss_dssp             HT---------TTCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCB
T ss_pred             Hh---------cCCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------HHHHHHHHHHHHhcCCC
Confidence            43         2788999999999999999999999999999999999999987         78999999999999999


Q ss_pred             cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccC
Q 007593          244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG  302 (597)
Q Consensus       244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~  302 (597)
                      +|++|||||++||+||||||||+|.+|+| ++||||||..||.|||+||+|||+||++.
T Consensus       292 ~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~  349 (393)
T 1vj7_A          292 MPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGV  349 (393)
T ss_dssp             CTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC--------
T ss_pred             CCCcccccccCCCcCCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCC
Confidence            99999999999999999999999999999 99999999999999999999999999864

PyMOL of 1vj7

>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}	Back alignment and structure

>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}	Back alignment and structure

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}	Back alignment and structure

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}	Back alignment and structure

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}	Back alignment and structure

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}	Back alignment and structure

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4	Back alignment and structure

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A	Back alignment and structure

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2	Back alignment and structure

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2	Back alignment and structure

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E	Back alignment and structure

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A	Back alignment and structure

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A	Back alignment and structure

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1	Back alignment and structure

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*	Back alignment and structure

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}	Back alignment and structure

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D	Back alignment and structure

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}	Back alignment and structure

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}	Back alignment and structure

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A	Back alignment and structure

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A	Back alignment and structure

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}	Back alignment and structure

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}	Back alignment and structure

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}	Back alignment and structure

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1	Back alignment and structure

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A	Back alignment and structure

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2	Back alignment and structure

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A	Back alignment and structure

>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*	Back alignment and structure

>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		597
d2be3a1		203	d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase	7e-26
d1vj7a2		175	d.218.1.8 (A:197-371) Stringent response-like prot	5e-23
d1vj7a1		192	a.211.1.1 (A:5-196) Stringent response-like protei	9e-11
d1wxqa2		76	d.15.10.2 (A:320-395) GTP-binding protein PH0525 {	2e-07
d1rwsa_		68	d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeo	1e-05
d1zud21		65	d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carr	2e-04
d1nyra2		59	d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS	3e-04
d1tkea1		62	d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS	5e-04
d1tygb_		65	d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier	0.002
d2cu3a1		63	d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675	0.002

>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: RelA/SpoT domain
domain: Putative GTP pyrophosphokinase SP1097
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  103 bits (257), Expect = 7e-26
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 27/184 (14%)

Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI----HKVYDARALRVVVG 216
             + K+      + P   VT   R+K + SI  KM R+ +      H + D   LRV+V 
Sbjct: 24  RGIRKQYRKQNKHSPIEFVT--GRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQ 81

Query: 217 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-------G 269
             +             ++DI+H+       +  DYI + K SGY+S H  V+       G
Sbjct: 82  FVDD---------VKEVVDILHKRQDMRIIQERDYITHRKASGYRSYHVVVEYTVDTING 132

Query: 270 PDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK-----LQSISSMDESDIEASSSLSK 324
                 E+QIRT  M+ +A    + ++ Y+          L+  + +     E    +  
Sbjct: 133 AKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIRD 192

Query: 325 DTDD 328
           D  +
Sbjct: 193 DIQE 196

PyMOL of d2be3a1

>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175	Back information, alignment and structure

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76	Back information, alignment and structure

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 68	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Length = 65	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62	Back information, alignment and structure

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Length = 65	Back information, alignment and structure

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Length = 63	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		597
d1vj7a2		175	Stringent response-like protein RelA domain 2 {Str	100.0
d2be3a1		203	Putative GTP pyrophosphokinase SP1097 {Streptococc	99.96
d1wxqa2		76	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.79
d1tkea1		62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	98.73
d1nyra2		59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	98.59
d1wxqa2		76	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.08
d1zud21		65	Thiamin biosynthesis sulfur carrier protein ThiS {	97.87
d1rwsa_		68	Hypothetical protein PF1061 {Archaeon Pyrococcus f	97.84
d1tkea1		62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	97.8
d2hj1a1		77	Hypothetical protein HI0395 {Haemophilus influenza	97.68
d1vjka_		88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	97.5
d1nyra2		59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	97.33
d1tygb_		65	Thiamin biosynthesis sulfur carrier protein ThiS {	97.08
d2cu3a1		63	Uncharacterised protein TTHA0675 {Thermus thermoph	96.81
d1xo3a_		101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	95.38
d1fm0d_		81	Molybdopterin synthase subunit MoaD {Escherichia c	93.63
d1v8ca1		87	MoaD-related protein, N-terminal domain {Thermus t	93.09
d1ryja_		70	Hypothetical protein MTH1743 {Archaeon Methanobact	92.44
d2hj1a1		77	Hypothetical protein HI0395 {Haemophilus influenza	85.99
d1dm9a_		104	Heat shock protein 15 kD {Escherichia coli [TaxId:	82.4
d2g1la1		102	Kinesin-like protein kif1c {Human (Homo sapiens) [	81.81

>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: RelA/SpoT domain
domain: Stringent response-like protein RelA domain 2
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=1.6e-49  Score=379.52  Aligned_cols=160  Identities=35%  Similarity=0.624  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCC
Q 007593          122 DRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG  201 (597)
Q Consensus       122 ~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~  201 (597)
                      .+.+|+.+++.+...                      +++.|.+.         |+++.|.||+|++||||+||++++.+
T Consensus        14 ~r~~re~~i~~i~~~----------------------L~~~L~~~---------~i~~~I~gR~K~~ySI~~Km~~k~~~   62 (175)
T d1vj7a2          14 KRREREALVDDIVTK----------------------IKSYTTEQ---------GLFGDVYGRPKHIYSIYRKMRDKKKR   62 (175)
T ss_dssp             THHHHHHHHHHHHHH----------------------HHHHHHTT---------TCCCEEEECCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHH----------------------HHHHHHhc---------CCccEEEEEEccHHHHHHHHHhcCCC
Confidence            577888888876543                      34445432         78899999999999999999999999


Q ss_pred             CcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccCcCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEee
Q 007593          202 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT  281 (597)
Q Consensus       202 ~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~pip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT  281 (597)
                      |++|+|++||||||.+         +.|||+++|+||+.|+|+|++|||||++||+||||||||+|.+|+| ++||||||
T Consensus        63 ~~~i~Di~aiRIIv~~---------~~dcy~~lg~ih~~~~p~~~r~kDyI~~PK~nGYqSLHt~v~~~~~-~~evqIRT  132 (175)
T d1vj7a2          63 FDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRT  132 (175)
T ss_dssp             CCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEE
T ss_pred             hhhccccceEEEEEee---------cccHHHHHHHHHhcCCceeeccccccccCCCCCcceEEEEEEcCCc-cEEEEEEe
Confidence            9999999999999987         7899999999999999999999999999999999999999999987 89999999


Q ss_pred             hhhHHHHHhhhhhhhhccccCCccccccccccchHhhhccC
Q 007593          282 QKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL  322 (597)
Q Consensus       282 ~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~~ll  322 (597)
                      ..||.|||+|+||||.||++..........+.++.++++|+
T Consensus       133 ~~M~~~Ae~G~aahw~Yk~~~~~~~~~~~~~~~~~wl~~ll  173 (175)
T d1vj7a2         133 KEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELV  173 (175)
T ss_dssp             HHHHHHHHHTTCC---------------------CHHHHHH
T ss_pred             hHHHHHHhhhHHHHHhhccCCCCCcchHHHHHHHHHHHHhh
Confidence            99999999999999999975443322223333444555554

PyMOL of d1vj7a2

>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure